HHsearch alignment for GI: 254780711 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.84 E-value=0.0068 Score=42.29 Aligned_cols=144 Identities=25% Similarity=0.354 Sum_probs=75.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~-------~~~~~V-~-~~--pgT-----T~~~~~g~--i---~---------------~~ 45 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS-------NAKPKI-A-DY--PFT-----TLVPNLGV--V---R---------------VD 45 (170)
T ss_pred CEEEECCCCCCHHHHHHHHH-------CCCCEE-E-CC--CCC-----CCCCEEEE--E---E---------------EC
T ss_conf 58998999998999999996-------787603-2-56--665-----23744779--9---9---------------36
Q ss_pred CCCCEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-----C----CCEEEEE
Q ss_conf 15886998334422---2112468999999851385110003101112256888898876358-----4----4077641
Q gi|254780711|r 182 GGYDAVILDTAGRN---HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-----L----TGIILTR 249 (461)
Q Consensus 182 ~~~D~iiiDTaGR~---~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-----i----~giIlTK 249 (461)
T Consensus 46 ~~~~i~~~DtpGi~~~~~~~~~l~~~~--l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK 123 (170)
T cd01898 46 DGRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHH--HHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEH
T ss_conf 985699964886444554662248999--861334561799998998789899999999999982744403865067762
Q ss_pred CCCCCCCC--HHHH--HHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 15766330--3677--7888478730261--586723210
Q gi|254780711|r 250 MDGDGRGG--AALS--MRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 250 lD~~akgG--~als--~~~~~~~PI~fig--~GE~~~dle 283 (461)
T Consensus 124 ~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 163 (170)
T cd01898 124 IDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELL 163 (170)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 0242835638999999985699958999754797999999