HHsearch alignment for GI: 254780711 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.82 E-value=0.00046 Score=51.19 Aligned_cols=123 Identities=22% Similarity=0.340 Sum_probs=81.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 23443334688999999998614895078205422100477999985103474222332103689999999999741588
Q gi|254780711|r 106 VGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYD 185 (461)
Q Consensus 106 vGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D 185 (461)
T Consensus 6 sgKgGvGkt~~~~nLa~~la~-~G~~vll~D~D~g----------------~a----------------------n~~~D 46 (139)
T cd02038 6 SGKGGVGKTNISANLALALAK-LGKRVLLLDADLG----------------LA----------------------NLDYD 46 (139)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----------------CC----------------------CCCCC
T ss_conf 499998399999999999997-8996999989899----------------96----------------------57999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCHHHH
Q ss_conf 69983344222112468999999851385110003101--11225688889887635844--077641157663303677
Q gi|254780711|r 186 AVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTGQDAVHLARNFDKIVDLT--GIILTRMDGDGRGGAALS 261 (461)
Q Consensus 186 ~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~Gq~a~~~a~~F~~~~~i~--giIlTKlD~~akgG~als 261 (461)
T Consensus 47 ~viiD~~aG~~~~~------~~~~~~--ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~ 118 (139)
T cd02038 47 YIIIDTGAGISDNV------LDFFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFK 118 (139)
T ss_pred EEEEECCCCCCHHH------HHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99994899987789------999995--8957999589706799999999999996399975999956899999999999
Q ss_pred -----HHHHHCCCHHHEEC
Q ss_conf -----78884787302615
Q gi|254780711|r 262 -----MRTVTGKPIKAIGT 275 (461)
Q Consensus 262 -----~~~~~~~PI~fig~ 275 (461)
T Consensus 119 ~l~~v~~kfL~v~l~~lG~ 137 (139)
T cd02038 119 RLSNVSNRFLGLSLDYLGF 137 (139)
T ss_pred HHHHHHHHHCCCCCCCCEE
T ss_conf 9999999980998310714