HHsearch alignment for GI: 254780711 and conserved domain: cd03111

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.02  E-value=0.013  Score=40.23  Aligned_cols=88  Identities=23%  Similarity=0.349  Sum_probs=54.3

Q ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             89962344-33346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
T Consensus         1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd-------------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------   43 (106)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf             9899728998668999999999999841993899965467799-------------------------------------


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHHHHH
Q ss_conf             415886998334422211246899999985138511000310111--2256888898876
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARNFDK  238 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~F~~  238 (461)
T Consensus        44 ----d~VVvD~~~~~--~~~~~~al------~~ad~i~lv~~~~lp~lrn~kr~l~~l~~   91 (106)
T cd03111          44 ----DYVVVDLGRSL--DEVSLAAL------DQADRVFLVTQQDLPSIRNAKRLLELLRV   91 (106)
T ss_pred             ----CEEEECCCCCC--CHHHHHHH------HHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             ----78999186553--88999999------86797999806774899979999999998