HHsearch alignment for GI: 254780711 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.02 E-value=0.013 Score=40.23 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=54.3
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89962344-33346889999999986148950782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQ-GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~-GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHHHHHHHHHH
Q ss_conf 415886998334422211246899999985138511000310111--2256888898876
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAVHLARNFDK 238 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~~~a~~F~~ 238 (461)
T Consensus 44 ----d~VVvD~~~~~--~~~~~~al------~~ad~i~lv~~~~lp~lrn~kr~l~~l~~ 91 (106)
T cd03111 44 ----DYVVVDLGRSL--DEVSLAAL------DQADRVFLVTQQDLPSIRNAKRLLELLRV 91 (106)
T ss_pred ----CEEEECCCCCC--CHHHHHHH------HHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf ----78999186553--88999999------86797999806774899979999999998