HHsearch alignment for GI: 254780711 and conserved domain: cd03114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.56 E-value=9.8e-07 Score=71.59 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=87.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHH----HHHHHHCCCCCCCCCCC---CCHHHHH
Q ss_conf 89962344333468899999999861489507820542---21004779----99985103474222332---1036899
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQ----LRYLGEQIQVDTLEVIP---EQSPEKI 171 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQ----L~~~a~~~~v~~~~~~~---~~dp~~i 171 (461)
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 9762589978789999999999997-898379999688878668620323545344157998368634666654204688
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC-CCCEEEEEC
Q ss_conf 9999999974158869983344222112468999999851385110003101112256888898876358-440776411
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD-LTGIILTRM 250 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~-i~giIlTKl 250 (461)
T Consensus 80 ~~~~i~~l~~~g~D~IiIETvGvGQse~~i-------~~~--aD~~i~v~~p~~GD~i--Q~~K~g-i~e~aDl~vvNK~ 147 (148)
T cd03114 80 TPEVIRVLDAAGFDVIIVETVGVGQSEVDI-------ASM--ADTTVVVMAPGAGDDI--QAIKAG-IMEIADIVVVNKA 147 (148)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHH-------HHH--CCEEEEEECCCCCCHH--HHCCCC-HHHCCCEEEEECC
T ss_conf 999999999759998999748777560265-------543--5669999636887377--611228-5212469999378
Q ss_pred C
Q ss_conf 5
Q gi|254780711|r 251 D 251 (461)
Q Consensus 251 D 251 (461)
T Consensus 148 D 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
T ss_conf 9