HHsearch alignment for GI: 254780711 and conserved domain: cd03116
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.43 E-value=0.0057 Score=42.88 Aligned_cols=72 Identities=26% Similarity=0.406 Sum_probs=50.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~-~G~~V~~iKH~~H~-------------f~~----D~~GkDS~r--------~ 54 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD-------------FDI----DTPGKDSYR--------H 54 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC-------------CCC----CCCCCHHHH--------H
T ss_conf 929999967999999999999999997-79859899734767-------------777----789844177--------6
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 741588699833442221
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~ 197 (461)
T Consensus 55 ~~AGA~~v~v~s~~~~~l 72 (159)
T cd03116 55 REAGAEEVLVSSPRRWAL 72 (159)
T ss_pred HHCCCCEEEEECCCEEEE
T ss_conf 752973799975671887