HHsearch alignment for GI: 254780711 and conserved domain: cd03240
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.50 E-value=0.013 Score=40.11 Aligned_cols=30 Identities=33% Similarity=0.679 Sum_probs=20.9
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 210002588418996234433346889999999
Q gi|254780711|r 91 IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH 123 (461)
Q Consensus 91 ~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~ 123 (461)
T Consensus 16 ~~i~f~~~---itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 16 SEIEFFSP---LTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred CEEEEECC---EEEEECCCCCCHHHHHHHHHHC
T ss_conf 35885088---8999989999999999998630