HHsearch alignment for GI: 254780711 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.74 E-value=0.16 Score=31.85 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000258841899623443334688999999998614895078205422
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH 140 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~ 140 (461)
T Consensus 35 ~~i~~G--e~vaIvG~sGsGKSTL~~ll~gl~~p~~G~-I~idg~~i~ 79 (226)
T cd03248 35 FTLHPG--EVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGKPIS 79 (226)
T ss_pred EEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEHH
T ss_conf 998299--999999999984999999996454678878-999999934