HHsearch alignment for GI: 254780711 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.14 Score=32.29 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=28.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 884189962344333468899999999861489507820542
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV 139 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt 139 (461)
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i 66 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR-ILIDGHDV 66 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf 799999999899982999999996676678868-99999996