HHsearch alignment for GI: 254780711 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.50 E-value=0.038 Score=36.62 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=39.9
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 94 DLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 94 ~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~-~~~~~~~~~ig~ 86 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSR-RLRKIRRKEIQM 86 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH-HHHHHHCCCEEE
T ss_conf 789869989999999998699999999728987886-69989964677999-999972463799