HHsearch alignment for GI: 254780711 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.09 E-value=0.055 Score=35.39 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 00025884189962344333468899999999861489507820542210
Q gi|254780711|r 93 LDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP 142 (461)
Q Consensus 93 l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~ 142 (461)
T Consensus 24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G-~i~i~G~d~~~~ 72 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKE 72 (218)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCC
T ss_conf 2789859829999999998499999999779778974-899999998869