HHsearch alignment for GI: 254780711 and conserved domain: cd03291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.22 E-value=0.052 Score=35.57 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 025884189962344333468899999999861489-----507820542210047799998510347422233210368
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKK-----KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPE 169 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~-----kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~ 169 (461)
T Consensus 58 f~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~-----Tire--NI~~g~~~~~~~~~ 130 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG-----TIKE--NIIFGVSYDEYRYK 130 (282)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC-----CHHH--HHHCCCCCCHHHHH
T ss_conf 9984999999999999819999999957872786589999999986574422671-----0999--97516886889999
Q ss_pred HHHHHH-HHHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-HHCCHHHHHHHHHHHHH-----
Q ss_conf 999999-99997---415886998334422211246899999985138511000310-11122568888988763-----
Q gi|254780711|r 170 KIAIRA-TQSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVAD-ALTGQDAVHLARNFDKI----- 239 (461)
Q Consensus 170 ~i~~~a-~~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~d-a~~Gq~a~~~a~~F~~~----- 239 (461)
T Consensus 131 ~~~~~~~l~~~i~~lp~g~~t~vge-~G~-~LSGG-QkQRlaiARALl~~p~IliLDEpTS~LD~~tE~~I~~~~l~~~~ 207 (282)
T cd03291 131 SVVKACQLEEDITKFPEKDNTVLGE-GGI-TLSGG-QRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred HHHHHHCCHHHHHHCCCCCCCEECC-CCC-CCCHH-HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999851499998463425523003-677-58999-99999999998428998998687766898789999999999986
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-----CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 5844077641157663303677788847873026158672-----321001368899877358627889
Q gi|254780711|r 240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-----NDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-----~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 208 ~~kTvI~ItH-----r----L~~i~~-aDrIiVL~~G~Ive~Gth~ELm~~~g-~ya~~~~~~~~~~~~ 265 (282)
T cd03291 208 ANKTRILVTS-----K----MEHLKK-ADKILILHEGSSYFYGTFSELQSLRP-DFSSKLMGYDTFDQF 265 (282)
T ss_pred CCCEEEEEEC-----C----HHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC-HHHHHHHCCCCCCHH
T ss_conf 8998999937-----8----888986-99999998988999748899863497-899998537640011