HHsearch alignment for GI: 254780711 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.16 Score=31.84 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=37.6
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 100025884189962344333468899999999861489507820542210047799998510347
Q gi|254780711|r 92 ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV 157 (461)
Q Consensus 92 ~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v 157 (461)
T Consensus 44 sl~i~~G--E~~~ivG~SGsGKSTLLr~i~GL~~p~~G-~I~~~G~~i~~~~~~~l~~~r~~~igm 106 (269)
T cd03294 44 SLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred EEEECCC--CEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHCCCEEE
T ss_conf 7588899--99999989984899999999759999975-999999999999989998852564699