HHsearch alignment for GI: 254780711 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.99 E-value=0.0036 Score=44.39 Aligned_cols=137 Identities=19% Similarity=0.327 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~----~--~~~~~~~------p-----------T~G~~~~~i--------------- 54 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFL----L--GEVVHTS------P-----------TIGSNVEEI--------------- 54 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCCCC------C-----------CCCCCEEEE---------------
T ss_conf 977999999899998899999997----3--9927716------7-----------236046999---------------
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHCC---CCC----EEEEE
Q ss_conf 997415886998334422211246899999985138511000310111225688889-8876358---440----77641
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIVD---LTG----IILTR 249 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~~---i~g----iIlTK 249 (461)
T Consensus 55 --~~~~~~~~iwD~~G~e~~~-----~~~~~y-~~~a~~ii~VvD~sd~-~~~~~~~~~l~~~l~~~~~~~~pili~~NK 125 (174)
T cd04153 55 --VYKNIRFLMWDIGGQESLR-----SSWNTY-YTNTDAVILVIDSTDR-ERLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred --EECCEEEEEEECCCCCCCC-----CHHHHH-HCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf --9788899999899986566-----226777-0577537999976788-899999999999972610169828999955
Q ss_pred CCCC-CCC----CHHHHHHHHHCCCHHHEE----CCCCCCC
Q ss_conf 1576-633----036777888478730261----5867232
Q gi|254780711|r 250 MDGD-GRG----GAALSMRTVTGKPIKAIG----TGEKIND 281 (461)
Q Consensus 250 lD~~-akg----G~als~~~~~~~PI~fig----~GE~~~d 281 (461)
T Consensus 126 ~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAktG~Gv~e 166 (174)
T cd04153 126 QDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 55655789999999974777635980999966858919899