HHsearch alignment for GI: 254780711 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.77 E-value=0.0046 Score=43.61 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~~~~~-----~~~~~~~-----------~Tvg~~~~~-----------------i~~~ 48 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKG-----LPPSKIT-----------PTVGLNIGT-----------------IEVG 48 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC-----CCCCCCC-----------CCCCEEEEE-----------------EEEC
T ss_conf 999999998888999988750367677-----7655403-----------531326899-----------------9989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-HHHHH
Q ss_conf 588699833442221124689999998513851100031011122568888-98876
Q gi|254780711|r 183 GYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-RNFDK 238 (461)
Q Consensus 183 ~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-~~F~~ 238 (461)
T Consensus 49 ~~~l~iwD~~Gqe-----~~~~l~~~y~-~~a~~ii~VvD~sd-~~~~~~~~~~l~~ 98 (167)
T cd04160 49 NARLKFWDLGGQE-----SLRSLWDKYY-AECHAIIYVIDSTD-RERFEESKSALEK 98 (167)
T ss_pred CEEEEEEECCCCH-----HHHHHHHHHC-CCCCEEEEEEECCC-HHHHHHHHHHHHH
T ss_conf 9999999689878-----8878998742-89878999986686-7889999999999