HHsearch alignment for GI: 254780711 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.20 E-value=0.041 Score=36.30 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=67.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--HCCCCEE--EECCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 8996234433346889999999986--1489507--82054221004779999851034-74222332103689999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKT--LKKKKIL--MASLDVHRPAAQEQLRYLGEQIQ-VDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~--~~~~kV~--lv~~Dt~R~aA~eQL~~~a~~~~-v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~---~~~E~eRgiTI~s~~~sl~---~-~~--------- 65 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDI---RKDEQERGISIKSSPISLV---L-PD--------- 65 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC---CHHHHHHCCCEECCEEEEE---E-EC---------
T ss_conf 599982789898999999999734455540444211357516---4665420355861459999---8-25---------
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC---HHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99974158869983344222112468999999851385110003101112---25688889887635844077641157
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG---QDAVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G---q~a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
T Consensus 66 --~~~k~~~inlIDTPGH~----dF~~ev~~al~~~--DgailVVDa~eGv~~qT~~~l~~a~~~~l~-~ilviNKiDR 135 (213)
T cd04167 66 --SKGKSYLFNIIDTPGHV----NFMDEVAAALRLS--DGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred --CCCCEEEEEEEECCCCH----HHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
T ss_conf --66750578778898724----1799999888637--767999987888757799999999986999-8999988234