HHsearch alignment for GI: 254780711 and conserved domain: cd04170
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.66 E-value=0.00047 Score=51.14 Aligned_cols=204 Identities=23% Similarity=0.350 Sum_probs=107.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-----HHHHH
Q ss_conf 9962344333468899999999861489507820542210047799998510347422233210368999-----99999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIA-----IRATQ 177 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~-----~~a~~ 177 (461)
T Consensus 2 i~iigH~~aGKTtL~E~lL~~~g~------------i~~~G~V~~g~t~~D------------~~~~E~~RgiSi~s~~~ 57 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGA------------IDRLGSVEDGTTVSD------------YDPEEIKRKMSISTSVA 57 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC------------CCCCCCCCCCCCCCC------------CCHHHHHCCCCEECCEE
T ss_conf 899908999989999999996699------------665765458973577------------87889867967513557
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 997415886998334422211246899999985138511000310111225-----688889887635844077641157
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFDKIVDLTGIILTRMDG 252 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~~~~~i~giIlTKlD~ 252 (461)
T Consensus 58 ~~~w~~~~inliDTPG~----~DF~~e~~~aL~v~--D~Av~Vida~~GVe~~T~~~w~~~~~~~--iP-~i~fINKmDr 128 (268)
T cd04170 58 PLEWKGHKINLIDTPGY----ADFVGETRAALRAA--DAALVVVSAQSGVEVGTEKLWEFADEAG--IP-RIIFINKMDR 128 (268)
T ss_pred EEEECCEEEEEEECCCC----HHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCCC
T ss_conf 88889979999869897----57999999984047--8399994187547687999999999859--99-8999978787
Q ss_pred -CCCCCHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCC----------HHHHHHHHHCCCCHHHHHHHHH
Q ss_conf -66330367-778884787302----6158672---3210-----013----------6889987735862788999874
Q gi|254780711|r 253 -DGRGGAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFF----------PDRIANRILGMGDVVSLVEKAA 308 (461)
Q Consensus 253 -~akgG~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~----------p~~~~~riLGmgD~~~l~e~~~ 308 (461)
T Consensus 129 ~~ad~~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDl~~~~a~~~~~~~~~~~~~ip~~~~~~~~~~--r~~L~E~va 206 (268)
T cd04170 129 ERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA 206 (268)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCEECCCCHHHHHHHHHH--HHHHHHHHH
T ss_conf 899647799999998689849999665268871488766667799923999722705977888889999--888898887
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 211267899888653-10463799999999998511488
Q gi|254780711|r 309 RNLNEKQAALTAKKI-AKGKFDLEDLAEQFRQTQKIGGI 346 (461)
Q Consensus 309 ~~~d~~~~~~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~l 346 (461)
T Consensus 207 e----~-Dd~L~ekyle~~~l~~~el~~~l~~~~~~g~~ 240 (268)
T cd04170 207 E----T-DDELMEKYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred H----C-CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 4----3-89999998678998999999999999985958