HHsearch alignment for GI: 254780711 and conserved domain: pfam00025
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=95.94 E-value=0.014 Score=39.97 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=54.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
T Consensus 12 ~k~~Ki~llG~~~vGKTsll~~~~----~--~~~~~------~~p-------T----ig~~~~~v--------------- 53 (174)
T pfam00025 12 NKEMRILILGLDNAGKTTILYKLK----L--GEIVT------TIP-------T----IGFNVETV--------------- 53 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH----C--CCCCC------CCC-------C----CCCEEEEE---------------
T ss_conf 966699999999998899999995----4--99887------447-------4----68238999---------------
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCHHCCHHHHHHHH-HHHHHC------CCCC-EEEE
Q ss_conf 9974158869983344222112468999-99985138511000310111225688889-887635------8440-7764
Q gi|254780711|r 178 SARDGGYDAVILDTAGRNHINDSLMQEI-SEIKSLTNPHEILLVADALTGQDAVHLAR-NFDKIV------DLTG-IILT 248 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaGR~~~d~~lm~El-~~i~~~~~p~e~~lV~da~~Gq~a~~~a~-~F~~~~------~i~g-iIlT 248 (461)
T Consensus 54 --~~~~~~~~iwDt~Gqe~~-----~~~~~~y~~--~a~~ii~V~D~t~~-~s~~~~~~~l~~~l~~~~~~~~piliv~N 123 (174)
T pfam00025 54 --TYKNVKFTVWDVGGQESL-----RPLWRNYFP--NTDAVIFVVDSADR-DRIEEAKEELHALLNEEELADAPLLILAN 123 (174)
T ss_pred --EECCEEEEEEECCCCCCC-----CHHHHHHHC--CCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf --989999999827987023-----267998841--78268999867867-87999999999987542358970899872
Q ss_pred ECCC
Q ss_conf 1157
Q gi|254780711|r 249 RMDG 252 (461)
Q Consensus 249 KlD~ 252 (461)
T Consensus 124 K~DL 127 (174)
T pfam00025 124 KQDL 127 (174)
T ss_pred CCCC
T ss_conf 5667