HHsearch alignment for GI: 254780711 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.12 E-value=0.012 Score=40.36 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a 179 (461)
T Consensus 53 Ri~ei~G~essGKTtlal~~ia~aQk~gg-~~~~i--D~E~a~d----~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~l 125 (322)
T pfam00154 53 RIIEIYGPESSGKTTLALHAIAEAQKAGG-TAAFI--DAEHALD----PVYAKKLGVDIDNLLVSQPDTGEQALEIADML 125 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHHHCC----HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877789999999999973499-38998--5366059----88999809880253897788399999999998
Q ss_pred HH-CCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 74-158869983344222112468999
Q gi|254780711|r 180 RD-GGYDAVILDTAGRNHINDSLMQEI 205 (461)
Q Consensus 180 ~~-~~~D~iiiDTaGR~~~d~~lm~El 205 (461)
T Consensus 126 i~~~~~~liViDSvaal~p~~E~e~~~ 152 (322)
T pfam00154 126 VRSGAVDLIVVDSVAALVPKAEIEGEM 152 (322)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 537997659982534567688875243