HHsearch alignment for GI: 254780711 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.12  E-value=0.012  Score=40.36  Aligned_cols=98  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a  179 (461)
T Consensus        53 Ri~ei~G~essGKTtlal~~ia~aQk~gg-~~~~i--D~E~a~d----~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~l  125 (322)
T pfam00154        53 RIIEIYGPESSGKTTLALHAIAEAQKAGG-TAAFI--DAEHALD----PVYAKKLGVDIDNLLVSQPDTGEQALEIADML  125 (322)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHHHCC----HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf             08999889877789999999999973499-38998--5366059----88999809880253897788399999999998


Q ss_pred             HH-CCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             74-158869983344222112468999
Q gi|254780711|r  180 RD-GGYDAVILDTAGRNHINDSLMQEI  205 (461)
Q Consensus       180 ~~-~~~D~iiiDTaGR~~~d~~lm~El  205 (461)
T Consensus       126 i~~~~~~liViDSvaal~p~~E~e~~~  152 (322)
T pfam00154       126 VRSGAVDLIVVDSVAALVPKAEIEGEM  152 (322)
T ss_pred             HCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             537997659982534567688875243