HHsearch alignment for GI: 254780711 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00  E-value=0  Score=445.60  Aligned_cols=196  Identities=51%  Similarity=0.778  Sum_probs=192.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~   79 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA   79 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             969999899999889999999999997-7992899975877688999999999863981781487778789999999998


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf             74158869983344222112468999999851385110003101112256888898876358440776411576633036
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA  259 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a  259 (461)
T Consensus        80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~  159 (196)
T pfam00448        80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAA  159 (196)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf             84689999998999874767789999999852287302899856778213789998760047762688840578875299


Q ss_pred             HHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             7778884787302615867232100136889987735
Q gi|254780711|r  260 LSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG  296 (461)
Q Consensus       260 ls~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG  296 (461)
T Consensus       160 l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG  196 (196)
T pfam00448       160 LSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG  196 (196)
T ss_pred             HHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf             9899998969799967998120634799999998559