HHsearch alignment for GI: 254780711 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=100.00 E-value=0 Score=445.60 Aligned_cols=196 Identities=51% Similarity=0.778 Sum_probs=192.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 969999899999889999999999997-7992899975877688999999999863981781487778789999999998
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 74158869983344222112468999999851385110003101112256888898876358440776411576633036
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAA 259 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~a 259 (461)
T Consensus 80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~G~~ 159 (196)
T pfam00448 80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKGGAA 159 (196)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf 84689999998999874767789999999852287302899856778213789998760047762688840578875299
Q ss_pred HHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 7778884787302615867232100136889987735
Q gi|254780711|r 260 LSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296 (461)
Q Consensus 260 ls~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG 296 (461)
T Consensus 160 l~~~~~~~~Pi~~~t~Gq~v~Dl~~~~~~~~~~~lLG 196 (196)
T pfam00448 160 LSIAAETGKPIKFIGVGEKIDDLEPFDPERFVSRLLG 196 (196)
T ss_pred HHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCC
T ss_conf 9899998969799967998120634799999998559