HHsearch alignment for GI: 254780711 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=98.50 E-value=1.5e-06 Score=70.19 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH---------------------HHHHC-------CCCC
Q ss_conf 3443334688999999998614895078205422100477999---------------------98510-------3474
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLR---------------------YLGEQ-------IQVD 158 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~---------------------~~a~~-------~~v~ 158 (461)
T Consensus 6 ~KGGVGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (212)
T pfam01656 6 TKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNLDPLL 84 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCCCCEE
T ss_conf 89980699999999999997-89978998389999625886587643444444101011210024564222455558746
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-C-HHHHHHH
Q ss_conf 222332---1036899999999997415886998334422211246899999985138511000310111-2-2568888
Q gi|254780711|r 159 TLEVIP---EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-G-QDAVHLA 233 (461)
Q Consensus 159 ~~~~~~---~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-G-q~a~~~a 233 (461)
T Consensus 85 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--------~~~al~~ad~vivv~~p~~~sl~~~~~l~ 156 (212)
T pfam01656 85 LIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--------TANALVAADILVVPIEPEGVAVLGAQRLL 156 (212)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------HHHHHHCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 5335015667777779999998766604998999479975599--------99999839989999489769999999999
Q ss_pred HHHHHHCC--CCCEEEEECCCCCCCC---HHHHHHHHHCCCHH
Q ss_conf 98876358--4407764115766330---36777888478730
Q gi|254780711|r 234 RNFDKIVD--LTGIILTRMDGDGRGG---AALSMRTVTGKPIK 271 (461)
Q Consensus 234 ~~F~~~~~--i~giIlTKlD~~akgG---~als~~~~~~~PI~ 271 (461)
T Consensus 157 ~~~~-~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (212)
T pfam01656 157 ELVE-RLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVL 198 (212)
T ss_pred HHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999-85996229999148899836630789999999789975