HHsearch alignment for GI: 254780711 and conserved domain: pfam02606

>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.16  E-value=0.026  Score=37.89  Aligned_cols=199  Identities=19%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             44333468899999999861489507820542210---------------047799998510347422233210368999
Q gi|254780711|r  108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---------------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIA  172 (461)
Q Consensus       108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~  172 (461)
T Consensus        45 ~GGtGKTP~v~~l~~~l~~-~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~-lla~~~~~~v~V~---~~R~~a~  119 (318)
T pfam02606        45 VGGTGKTPLVIALAELLRA-RGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPL-LLARRTPVPVVVG---PDRAAAA  119 (318)
T ss_pred             ECCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHHCCCCEEEC---CCHHHHH
T ss_conf             5887858999999999997-699447832676765788789716889467396999-9987569859980---5289999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH----HHHHHHHHHCCCCCEE
Q ss_conf             99999997415886998334422211246899999985138511000310111--22568----8889887635844077
Q gi|254780711|r  173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV----HLARNFDKIVDLTGII  246 (461)
Q Consensus       173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~----~~a~~F~~~~~i~giI  246 (461)
T Consensus       120 ~~l~---~~~~~dviIlDDGfQ-h~~-------------l~rDl~Ivl~d~~~~fgng~lLPaGpLREp~~~l~raD~ii  182 (318)
T pfam02606       120 RALL---EAHGADVIILDDGFQ-HYR-------------LARDLEIVVVDGARGFGNGRLLPAGPLREPLSRLKRADAVI  182 (318)
T ss_pred             HHHH---HHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
T ss_conf             9999---848997999148666-730-------------01886899972887887997785813548965870039999


Q ss_pred             EEECCCCCCCCHHHHHHHHHCCCHHHE--ECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             641157663303677788847873026--1586723210013688998773586278899987421-1267899888653
Q gi|254780711|r  247 LTRMDGDGRGGAALSMRTVTGKPIKAI--GTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKKI  323 (461)
Q Consensus       247 lTKlD~~akgG~als~~~~~~~PI~fi--g~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k~  323 (461)
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~---~~~-v~a~sGIanP~~F~~~L~~~g~~i~~~---~~f~  254 (318)
T pfam02606       183 LNGGEAADPEIAEAPVLRARLEPSAAVNLADGE-RRPLA---GKR-VLAFAGIGNPQRFFDTLRALGLEVVAT---LAFP  254 (318)
T ss_pred             ECCCCCCHHHHHHCCHHHEEEEEEEEEECCCCC-CCCCC---CCE-EEEEEECCCHHHHHHHHHHCCCEEEEE---EECC
T ss_conf             939853211344323011488500447427732-00016---984-899996478799999999769878786---7778


Q ss_pred             HCCCCCHHHHHHH
Q ss_conf             1046379999999
Q gi|254780711|r  324 AKGKFDLEDLAEQ  336 (461)
Q Consensus       324 ~~g~F~l~Df~~Q  336 (461)
T Consensus       255 DHh~y~~~dl~~i  267 (318)
T pfam02606       255 DHHPFTAADLAFL  267 (318)
T ss_pred             CCCCCCHHHHHHH
T ss_conf             8777999999999