HHsearch alignment for GI: 254780711 and conserved domain: pfam02606
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=96.16 E-value=0.026 Score=37.89 Aligned_cols=199 Identities=19% Similarity=0.195 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 44333468899999999861489507820542210---------------047799998510347422233210368999
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRP---------------AAQEQLRYLGEQIQVDTLEVIPEQSPEKIA 172 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~---------------aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~ 172 (461)
T Consensus 45 ~GGtGKTP~v~~l~~~l~~-~g~~~~ilSRGYg~~~~~~~~v~~~~~~~~~GDEp~-lla~~~~~~v~V~---~~R~~a~ 119 (318)
T pfam02606 45 VGGTGKTPLVIALAELLRA-RGLRPGVLSRGYGGKSKGPVLVDPGSSAAEVGDEPL-LLARRTPVPVVVG---PDRAAAA 119 (318)
T ss_pred ECCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHHCCCCEEEC---CCHHHHH
T ss_conf 5887858999999999997-699447832676765788789716889467396999-9987569859980---5289999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC--CHHHH----HHHHHHHHHCCCCCEE
Q ss_conf 99999997415886998334422211246899999985138511000310111--22568----8889887635844077
Q gi|254780711|r 173 IRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT--GQDAV----HLARNFDKIVDLTGII 246 (461)
Q Consensus 173 ~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~--Gq~a~----~~a~~F~~~~~i~giI 246 (461)
T Consensus 120 ~~l~---~~~~~dviIlDDGfQ-h~~-------------l~rDl~Ivl~d~~~~fgng~lLPaGpLREp~~~l~raD~ii 182 (318)
T pfam02606 120 RALL---EAHGADVIILDDGFQ-HYR-------------LARDLEIVVVDGARGFGNGRLLPAGPLREPLSRLKRADAVI 182 (318)
T ss_pred HHHH---HHCCCCEEEECCCCC-CCC-------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEE
T ss_conf 9999---848997999148666-730-------------01886899972887887997785813548965870039999
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCHHHE--ECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 641157663303677788847873026--1586723210013688998773586278899987421-1267899888653
Q gi|254780711|r 247 LTRMDGDGRGGAALSMRTVTGKPIKAI--GTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKKI 323 (461)
Q Consensus 247 lTKlD~~akgG~als~~~~~~~PI~fi--g~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k~ 323 (461)
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~---~~~-v~a~sGIanP~~F~~~L~~~g~~i~~~---~~f~ 254 (318)
T pfam02606 183 LNGGEAADPEIAEAPVLRARLEPSAAVNLADGE-RRPLA---GKR-VLAFAGIGNPQRFFDTLRALGLEVVAT---LAFP 254 (318)
T ss_pred ECCCCCCHHHHHHCCHHHEEEEEEEEEECCCCC-CCCCC---CCE-EEEEEECCCHHHHHHHHHHCCCEEEEE---EECC
T ss_conf 939853211344323011488500447427732-00016---984-899996478799999999769878786---7778
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 1046379999999
Q gi|254780711|r 324 AKGKFDLEDLAEQ 336 (461)
Q Consensus 324 ~~g~F~l~Df~~Q 336 (461)
T Consensus 255 DHh~y~~~dl~~i 267 (318)
T pfam02606 255 DHHPFTAADLAFL 267 (318)
T ss_pred CCCCCCHHHHHHH
T ss_conf 8777999999999