HHsearch alignment for GI: 254780711 and conserved domain: pfam02881
>pfam02881 SRP54_N SRP54-type protein, helical bundle domain.
Probab=98.18 E-value=2.8e-06 Score=68.14 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 989999999999999985246969999999999999830311126998999999999999
Q gi|254780711|r 23 SETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDEL 82 (461)
Q Consensus 23 ~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL 82 (461)
T Consensus 22 ~~~~i~~~l~ele~~Li~aDvg~~~~~~ii~~l~~~~~----~~~~~~~~~i~~~l~e~L 77 (77)
T pfam02881 22 GEKKIDELLEELEEALLEADVGVETTEKIIERLKELVG----RKGLSDPEEIKKALKEEL 77 (77)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHC
T ss_conf 89860899999999999812468999999999999998----717999999999999769