HHsearch alignment for GI: 254780711 and conserved domain: pfam02978

>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=99.97  E-value=4.3e-31  Score=257.45  Aligned_cols=100  Identities=47%  Similarity=0.725  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf             63799999999998511488999998731344234323111678888899999745898786084113357899972326
Q gi|254780711|r  327 KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGS  406 (461)
Q Consensus       327 ~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GS  406 (461)
T Consensus         1 ~Ftl~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~-~~~~~~~~~lk~~~~Ii~SMT~~Er~~P~ll~~SR~~RIA~GS   79 (100)
T pfam02978         1 KFTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLPKL-AEQELDEKKLKRIEAIIDSMTPKERDNPEIINGSRKRRIAKGS   79 (100)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             988899999999999637899999778785402456-6530158999999999983799988682413867999998006


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             679899999999999999999
Q gi|254780711|r  407 GTNAAKINKLLKLHRQVAEMM  427 (461)
Q Consensus       407 G~~v~eVn~Llk~f~~m~kmm  427 (461)
T Consensus        80 G~~~~eVn~Llkqf~~m~kmm  100 (100)
T pfam02978        80 GTSVQEVNKLLKQFKQMKKMM  100 (100)
T ss_pred             CCCHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999998529