HHsearch alignment for GI: 254780711 and conserved domain: pfam02978
>pfam02978 SRP_SPB Signal peptide binding domain.
Probab=99.97 E-value=4.3e-31 Score=257.45 Aligned_cols=100 Identities=47% Similarity=0.725 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 63799999999998511488999998731344234323111678888899999745898786084113357899972326
Q gi|254780711|r 327 KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGS 406 (461)
Q Consensus 327 ~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~RIA~GS 406 (461)
T Consensus 1 ~Ftl~Df~~Q~~~i~kmG~l~~i~~miPG~~~~~~~-~~~~~~~~~lk~~~~Ii~SMT~~Er~~P~ll~~SR~~RIA~GS 79 (100)
T pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKLLSMIPGMGKLPKL-AEQELDEKKLKRIEAIIDSMTPKERDNPEIINGSRKRRIAKGS 79 (100)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 988899999999999637899999778785402456-6530158999999999983799988682413867999998006
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 679899999999999999999
Q gi|254780711|r 407 GTNAAKINKLLKLHRQVAEMM 427 (461)
Q Consensus 407 G~~v~eVn~Llk~f~~m~kmm 427 (461)
T Consensus 80 G~~~~eVn~Llkqf~~m~kmm 100 (100)
T pfam02978 80 GTSVQEVNKLLKQFKQMKKMM 100 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999998529