HHsearch alignment for GI: 254780711 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.05 E-value=0.065 Score=34.82 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=45.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221-00477999985103474-22233210368999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-PAAQEQLRYLGEQIQVD-TLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-~aA~eQL~~~a~~~~v~-~~~~~~~~dp~~i~~~a~~~ 178 (461)
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~-~~~~~i~~dm~e~~~~~~v------~~l~g~~~gyvg~~~~---G~l~~~v-- 71 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFG-DERALIRIDMSEYMEEHSV------SRLIGAPPGYVGYEEG---GQLTEAV-- 71 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHH------HHHCCCCCCCCCCCCC---CCHHHHH--
T ss_conf 79998898998999999999999679-8534488557565425699------9870589987262426---5078999--
Q ss_pred HHHCCCCEEEEECCCCCCCH
Q ss_conf 97415886998334422211
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHIN 198 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d 198 (461)
T Consensus 72 -~~~p~~VillDEIeKa~~~ 90 (168)
T pfam07724 72 -RRKPYSIVLIDEIEKAHPG 90 (168)
T ss_pred -HHCCCCEEEEHHHHHHCHH
T ss_conf -8389848986577665899