HHsearch alignment for GI: 254780711 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.05  E-value=0.065  Score=34.82  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=45.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221-00477999985103474-22233210368999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-PAAQEQLRYLGEQIQVD-TLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-~aA~eQL~~~a~~~~v~-~~~~~~~~dp~~i~~~a~~~  178 (461)
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~-~~~~~i~~dm~e~~~~~~v------~~l~g~~~gyvg~~~~---G~l~~~v--   71 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFG-DERALIRIDMSEYMEEHSV------SRLIGAPPGYVGYEEG---GQLTEAV--   71 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEECCCCCCCHHHH------HHHCCCCCCCCCCCCC---CCHHHHH--
T ss_conf             79998898998999999999999679-8534488557565425699------9870589987262426---5078999--


Q ss_pred             HHHCCCCEEEEECCCCCCCH
Q ss_conf             97415886998334422211
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHIN  198 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d  198 (461)
T Consensus        72 -~~~p~~VillDEIeKa~~~   90 (168)
T pfam07724        72 -RRKPYSIVLIDEIEKAHPG   90 (168)
T ss_pred             -HHCCCCEEEEHHHHHHCHH
T ss_conf             -8389848986577665899