HHsearch alignment for GI: 254780711 and conserved domain: pfam08423
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=97.51 E-value=0.0046 Score=43.59 Aligned_cols=174 Identities=16% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 46969999999999999830311126998999999999999987187742100025884189962344333468899999
Q gi|254780711|r 42 DVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIA 121 (461)
Q Consensus 42 DV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA 121 (461)
T Consensus 6 ~~~f~t~~~~~~~---r~~~~~isTg~~-----------~LD~lLgGGi~-------~g~ITEi~G~~gsGKTQlc~qla 64 (261)
T pfam08423 6 PMGFTTATELHQR---RSEVIRITTGSK-----------ELDKLLGGGIE-------TGSITEVFGEFRTGKTQLCHTLC 64 (261)
T ss_pred CCCCCCHHHHHHH---HCCCCEECCCCH-----------HHHHHHCCCCC-------CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 5787439999997---548735778987-----------89987379866-------77299998998887899999999
Q ss_pred HHHH---HHC--CCCEEEECCC-CCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9998---614--8950782054-221004779999851034---------742223321036899999999997415886
Q gi|254780711|r 122 YHLK---TLK--KKKILMASLD-VHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 122 ~~~~---~~~--~~kV~lv~~D-t~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
T Consensus 65 v~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qi---a~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~L 141 (261)
T pfam08423 65 VTCQLPLEMGGGEGKALYIDTEGTFRPERIVAI---AERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFAL 141 (261)
T ss_pred HHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 994070965699972899936888698999999---99829997898753314168998999999999999873178349
Q ss_pred EEEECCCCCCCHH-----HHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9983344222112-----468999999851385110003101112256888898876358440776411576
Q gi|254780711|r 187 VILDTAGRNHIND-----SLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGD 253 (461)
Q Consensus 187 iiiDTaGR~~~d~-----~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~ 253 (461)
T Consensus 142 vVvDSiaalfR~e~~g~~~l~~R~~~L~~~l--------------~~L~~lA~~~~~aVvvTNQV~~~~~~~ 199 (261)
T pfam08423 142 LIVDSATALYRTDFSGRGELAERQQHLAKFL--------------RSLQRLADEFGVAVVITNQVVAQVDGA 199 (261)
T ss_pred EEEECCCEEEEECCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHCCCEEEEEEEEEEECCCC
T ss_conf 9983240023330036752899999999999--------------999999998095899960479852886