HHsearch alignment for GI: 254780711 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.31 E-value=0.0028 Score=45.26 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=66.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCC------CCCCCCCCC--------
Q ss_conf 1899623443334688999999998614-8950782054221004779999851034------742223321--------
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQ------VDTLEVIPE-------- 165 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~------v~~~~~~~~-------- 165 (461)
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV-PT-RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLE 102 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CC-HHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 9889989999609999999999986338997599990-85-999999998860102102044556524773799999997
Q ss_pred -C--H-----HHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf -0--3-----68999999999--974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r 166 -Q--S-----PEKIAIRATQS--ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN 235 (461)
Q Consensus 166 -~--d-----p~~i~~~a~~~--a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~ 235 (461)
T Consensus 103 ~~~~~i~i~t~~~l-~~~~~~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 180 (201)
T smart00487 103 SGKTDILVTTPGRL-LDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CCCCCEEEECHHHH-HHHHHHCCCCCCCCEEEEEECHHHHHCC-CCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 59998999558999-9999727545254319999896775125-709999999996799997899924898689999999
Q ss_pred HH
Q ss_conf 87
Q gi|254780711|r 236 FD 237 (461)
Q Consensus 236 F~ 237 (461)
T Consensus 181 ~~ 182 (201)
T smart00487 181 FL 182 (201)
T ss_pred HC
T ss_conf 78