RPSBLAST alignment for GI: 254780711 and conserved domain: TIGR01425

>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429
 Score =  226 bits (578), Expect = 9e-60
 Identities = 131/431 (30%), Positives = 225/431 (52%), Gaps = 13/431 (3%)

Query: 4   NLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEK 63
           +L   + S  ++++    + E  ++  L+EI    LE+DV++++V+   + +++    E+
Sbjct: 4   DLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEE 63

Query: 64  ILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH 123
           +   +   +M+   V  EL  ++               VIM VGLQGSGKTTT  K+AY+
Sbjct: 64  MASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYY 123

Query: 124 LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGG 183
            +  K  K  +   D  R  A +QL+    + ++       E  P KIA    +  +   
Sbjct: 124 YQR-KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN 182

Query: 184 YDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLT 243
           +D +I+DT+GR+   DSL +E+ ++     P  I+ V D   GQ A   A+ F   VD+ 
Sbjct: 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242

Query: 244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303
            +I+T++DG  +GG ALS    T  PI  IGTGE I+D E F      +++LGMGD+  L
Sbjct: 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGL 302

Query: 304 VEKAAR-NLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQN 362
           ++K     L++ + AL  +K+ +G F L D+ EQF+   K+G +G IL M+PG      +
Sbjct: 303 IDKVQDLKLDDNEKALI-EKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPG---FSTD 358

Query: 363 IMPSSFDDKT---INHHIAIIASMTKEE--RANPSII--KHSRKKRIAAGSGTNAAKINK 415
            M    ++++   I   + I+ SMT +E    +  +   + SR +R+A GSG +   + +
Sbjct: 359 FMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRVARGSGRSIRDVQE 418

Query: 416 LLKLHRQVAEM 426
           LL+ +++ A+M
Sbjct: 419 LLEQYKKFAQM 429