RPSBLAST alignment for GI: 254780711 and conserved domain: TIGR01425
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429
Score = 226 bits (578), Expect = 9e-60
Identities = 131/431 (30%), Positives = 225/431 (52%), Gaps = 13/431 (3%)
Query: 4 NLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEK 63
+L + S ++++ + E ++ L+EI LE+DV++++V+ + +++ E+
Sbjct: 4 DLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEE 63
Query: 64 ILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYH 123
+ + +M+ V EL ++ VIM VGLQGSGKTTT K+AY+
Sbjct: 64 MASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYY 123
Query: 124 LKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGG 183
+ K K + D R A +QL+ + ++ E P KIA + +
Sbjct: 124 YQR-KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN 182
Query: 184 YDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLT 243
+D +I+DT+GR+ DSL +E+ ++ P I+ V D GQ A A+ F VD+
Sbjct: 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242
Query: 244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303
+I+T++DG +GG ALS T PI IGTGE I+D E F +++LGMGD+ L
Sbjct: 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGL 302
Query: 304 VEKAAR-NLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQN 362
++K L++ + AL +K+ +G F L D+ EQF+ K+G +G IL M+PG +
Sbjct: 303 IDKVQDLKLDDNEKALI-EKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPG---FSTD 358
Query: 363 IMPSSFDDKT---INHHIAIIASMTKEE--RANPSII--KHSRKKRIAAGSGTNAAKINK 415
M ++++ I + I+ SMT +E + + + SR +R+A GSG + + +
Sbjct: 359 FMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQPSRIQRVARGSGRSIRDVQE 418
Query: 416 LLKLHRQVAEM 426
LL+ +++ A+M
Sbjct: 419 LLEQYKKFAQM 429