RPSBLAST alignment for GI: 254780711 and conserved domain: COG0541

>gnl|CDD|30887 COG0541, Ffh, Signal recognition particle GTPase [Intracellular trafficking and secretion]. Length = 451
 Score =  546 bits (1408), Expect = e-156
 Identities = 232/459 (50%), Positives = 317/459 (69%), Gaps = 9/459 (1%)

Query: 1   MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAK 60
           MF++L +RL +  + + GKG ++E D+   LREIRR  LEADV+L+VV+ F KR++E+A 
Sbjct: 1   MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERAL 60

Query: 61  GEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKI 120
           GE++ + + PGQ  IKIV++ELV++LG E+ EL+L    P VI++VGLQGSGKTTT  K+
Sbjct: 61  GEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKL 120

Query: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180
           A +LK  K KK+L+ + D +RPAA EQL+ L EQ+ V       E+ P +IA  A + A+
Sbjct: 121 AKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179

Query: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240
           + GYD VI+DTAGR HI++ LM E+ EIK + NP E LLV DA+ GQDAV+ A+ F++ +
Sbjct: 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239

Query: 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300
            +TG+ILT++DGD RGGAALS R +TGKPIK IGTGEKI+DLE F PDR A+RILGMGDV
Sbjct: 240 GITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDV 299

Query: 301 VSLVEKAARNLNEKQAALTAKKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLK 360
           +SL+EKA   ++E++A   A+K+ KGKF LED  EQ  Q +K+G +  +L M+PGM  +K
Sbjct: 300 LSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGM-GMK 358

Query: 361 QNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKKRIAAGSGTNAAKINKLLKLH 420
            +      D+K +    AII SMT EER NP II  SRK+RIA GSGT+   +NKLLK  
Sbjct: 359 DSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINASRKRRIARGSGTSVQDVNKLLKQF 418

Query: 421 RQVAEMMHSTQGLGGNALTQQIMGRLKSKIGFGKNGRFP 459
           +Q+ +MM    G GG        G++   +     G+FP
Sbjct: 419 KQMKKMMKKMSGGGG-------KGKMMRGMKGMMGGKFP 450