RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str. psy62] (116 letters) >3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} (A:) Length = 112 Score = 112 bits (283), Expect = 1e-26 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 1 MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60 M ++IRLA G K YRIVV +++SPR+GK+I+ LGT++P + E+++ Sbjct: 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKV----LINVYPEKVK 56 Query: 61 HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKAL--ERLASKKNADEHA 114 W+ KG + + R L G++K + + + +R + K E A Sbjct: 57 EWVLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112 >3i1m_P 30S ribosomal protein S16; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ... (P:) Length = 82 Score = 107 bits (268), Expect = 7e-25 Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62 + IRLA G+K R Y++VVA+SR+ R+G+FIE++G +NP + E ++ +RI HW Sbjct: 2 VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60 Query: 63 MSKGAQPTDRILFFLDKAGL 82 + +GA +DR+ + + Sbjct: 61 VGQGATISDRVAALIKEVNK 80 >3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (P:) Length = 88 Score = 104 bits (262), Expect = 3e-24 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 3 LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62 +K+RL G K R YRIV + RS R+G+ ++K+G ++P + +N I + Sbjct: 2 VKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDP-----IKSQTYLNVPAILDF 56 Query: 63 MSKGAQPTDRILFFLDKAGLIKRSPQNNPKKS 94 + KGAQPT+ + L +A + K N K + Sbjct: 57 LEKGAQPTETVYDILKRAEVFKEFRLNQTKFN 88 >1jgq_S 30S ribosomal protein S16; ribosome assembly, protein synthesis, LIFE; HET: 2MG H2U M2G OMC OMG YG PSU 5MC 7MG 5MU 1MA 4SU; 5.00A {Thermus thermophilus} (S:) Length = 91 Score = 102 bits (255), Expect = 2e-23 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 5/91 (5%) Query: 3 LKIRLACGGSKSRHHY---RIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERI 59 +KIRLA GSK HY RIVV ++R RDGK+IEK+G ++P K P ++ ER Sbjct: 2 VKIRLARFGSKHNPHYPHYRIVVTDARRKRDGKYIEKIGYYDPR--KTTPDWLKVDVERA 59 Query: 60 QHWMSKGAQPTDRILFFLDKAGLIKRSPQNN 90 ++W+S GAQPTD L +AG+ ++ + Sbjct: 60 RYWLSVGAQPTDTARRLLRQAGVFRQEAREG 90 >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.76A {Thermus thermophilus HB27} (A:) Length = 154 Score = 28.7 bits (63), Expect = 0.31 Identities = 7/62 (11%), Positives = 16/62 (25%) Query: 52 FTMNFERIQHWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNAD 111 + +R ++ F +D+ G + + L A + Sbjct: 91 LASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEGHH 150 Query: 112 EH 113 H Sbjct: 151 HH 152 >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} (A:67-236) Length = 170 Score = 25.5 bits (55), Expect = 2.7 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 10/47 (21%) Query: 4 KIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPL 50 L +R+++ +A S S G + + +NPL Sbjct: 131 YYYLLTAEGGTRYNHAATIARSTSL--------YGPY--EVHPDNPL 167 >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:14-143,C:324-461) Length = 268 Score = 25.0 bits (54), Expect = 3.5 Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 8/53 (15%) Query: 38 GTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAGLIKRSPQNN 90 + + NPL + RI G ++AG R Sbjct: 196 SQLSQFKDETNPLSSLRHKRRISALGPGG--------LTRERAGFDVRDVHRT 240 >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, protein structure initiative; 2.00A {Bacillus halodurans c-125} (A:68-237) Length = 170 Score = 24.4 bits (52), Expect = 6.2 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 10/47 (21%) Query: 4 KIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPL 50 L + + + +A S+S G + PL Sbjct: 131 YYYLLVAEGGTEYEHAATLARSQSI--------DGPY--ETDPSYPL 167 >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* (A:121-276,A:352-395) Length = 200 Score = 23.6 bits (50), Expect = 9.7 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 5/28 (17%) Query: 34 IEKLGTWNPTLPKENPLRFTMNF-ERIQ 60 +EK+GTW+P + L T + +++ Sbjct: 173 LEKIGTWDPA----SGLNMTESQKGKLE 196 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.131 0.396 Gapped Lambda K H 0.267 0.0453 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 924,150 Number of extensions: 38353 Number of successful extensions: 122 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 11 Length of query: 116 Length of database: 4,956,049 Length adjustment: 69 Effective length of query: 47 Effective length of database: 2,623,504 Effective search space: 123304688 Effective search space used: 123304688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.7 bits)