RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16
[Candidatus Liberibacter asiaticus str. psy62]
         (116 letters)



>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
          thermophilus [TaxId: 274]}
          Length = 83

 Score =  107 bits (268), Expect = 4e-25
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          +KIRLA  GSK   HYRIVV ++R  RDGK+IEK+G ++P     + L+   + ER ++W
Sbjct: 2  VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKV--DVERARYW 59

Query: 63 MSKGAQPTDRILFFLDKAGLIKR 85
          +S GAQPTD     L +AG+ ++
Sbjct: 60 LSVGAQPTDTARRLLRQAGVFRQ 82


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score =  106 bits (265), Expect = 6e-25
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 3   LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
           ++IRLA  G K    YRIVV +++SPR+GK+I+ LGT++P    +  +   +  E+++ W
Sbjct: 2   VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDP----KRKVLINVYPEKVKEW 57

Query: 63  MSKGAQPTDRILFFLDKAGLIKR-SPQNNPKKSQPKKKALER 103
           + KG + + R    L   G++K   P+    K        E+
Sbjct: 58  VLKGVELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEK 99


>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 99.8 bits (249), Expect = 6e-23
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 3  LKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHW 62
          + IRLA  G+K R  Y++VVA+SR+ R+G+FIE++G +NP +  E      ++ +RI HW
Sbjct: 2  VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNP-IASEKEEGTRLDLDRIAHW 60

Query: 63 MSKGAQPTDRILFFLDK 79
          + +GA  +DR+   + +
Sbjct: 61 VGQGATISDRVAALIKE 77


>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
           domain {Bacillus anthracis [TaxId: 1392]}
          Length = 287

 Score = 23.8 bits (51), Expect = 3.8
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 63  MSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKK--KALERLASKK 108
           +    QP D      D  GLI     N   + Q K+  + ++ L  + 
Sbjct: 116 LKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQS 163


>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
           virus [TaxId: 12110]}
          Length = 476

 Score = 23.4 bits (50), Expect = 5.8
 Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 8/46 (17%)

Query: 29  RDGKFIEKLGTWNPTLPKENPLRFTMNFERIQHWMSKGAQPTDRIL 74
           R        G + P +  +         E I  + ++     ++++
Sbjct: 388 RHFHMDYGTGFYKPVMASK-------TLEAILSF-ARRGTIQEKLI 425


>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
           chain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 214

 Score = 23.3 bits (49), Expect = 5.9
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 32  KFIEKLGTWNPTLPKENPLRFTMNFERIQHWMS 64
           K IE        +   NP    ++F     +  
Sbjct: 74  KCIELSCGSVRKMRDRNPKVAEISFNSTNKYQL 106


>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
           BC3205 {Bacillus cereus [TaxId: 1396]}
          Length = 413

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 33  FIEKLGTWNPTLPKENPLRFT 53
            IE +  +N     +  ++F 
Sbjct: 116 MIEWMKDYNADPSNKKKIQFI 136


>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
           BC3120 {Bacillus cereus [TaxId: 1396]}
          Length = 403

 Score = 22.6 bits (48), Expect = 9.6
 Identities = 2/21 (9%), Positives = 9/21 (42%)

Query: 33  FIEKLGTWNPTLPKENPLRFT 53
            ++ +  +N     ++ +R  
Sbjct: 110 LLDWIRQYNANPKHKSKVRVI 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,177
Number of extensions: 19257
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 14
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)