BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16
[Candidatus Liberibacter asiaticus str. psy62]
         (116 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 116

 Score =  241 bits (616), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60
           MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ
Sbjct: 1   MTLKIRLACGGSKSRHHYRIVVANSRSPRDGKFIEKLGTWNPTLPKENPLRFTMNFERIQ 60

Query: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNADEHATT 116
           HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNADEHATT
Sbjct: 61  HWMSKGAQPTDRILFFLDKAGLIKRSPQNNPKKSQPKKKALERLASKKNADEHATT 116


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score = 23.9 bits (50), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 76  FLDKAGLIKRSPQNNPKKSQP 96
           FLDK G+  +S +++P K++P
Sbjct: 144 FLDKLGVSIKSVKSSPMKAEP 164


>gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 155

 Score = 22.3 bits (46), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 1   MTLKIRLACGGSKSRHHYRIVVA 23
           + L I L C      HHY IV +
Sbjct: 123 LNLVIALCCATDVLIHHYGIVTS 145


>537021.9.peg.753_1 
          Length = 1033

 Score = 22.3 bits (46), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 43  TLPKENPLRFTMNFERIQHWMSKGAQPTDRILFFLDKAGLIKRSPQN 89
           T+   +PLRF++ FER  +   + + P   I F  D+   + R  QN
Sbjct: 391 TITDIDPLRFSLLFERFLN-PDRMSMPDFDIDFCQDRRDEVIRYVQN 436


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 22.3 bits (46), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 88  QNNPKKSQPKKKALERLASKKNAD 111
           +++ KK     +A++RLAS++NA+
Sbjct: 213 EHDCKKGNIYTEAVQRLASQQNAE 236


>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 362

 Score = 21.6 bits (44), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 31  GKFIEKLGTW 40
           GKF+E LG W
Sbjct: 299 GKFLEGLGIW 308


>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 411

 Score = 21.6 bits (44), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 71  DRILFFLDKAGLIKRSPQNNPKKSQPKKKALERL 104
           DR   + D  G+    P+  PK    KK + E +
Sbjct: 167 DRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.131    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,993
Number of Sequences: 1233
Number of extensions: 2882
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 116
length of database: 328,796
effective HSP length: 63
effective length of query: 53
effective length of database: 251,117
effective search space: 13309201
effective search space used: 13309201
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)