HHsearch alignment for GI: 254780713 and conserved domain: COG0806
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=300.30 Aligned_cols=168 Identities=33% Similarity=0.549 Sum_probs=156.2
Q ss_pred CCCCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEECCCC-----EEEEEEEEEEECCEEEEEECCCCCHHHHHH
Q ss_conf 998200799999944630505999994189977876301020798-----379999999739979999638778455676
Q gi|254780713|r 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN-----RELRILKMYRKNKRFIATFSGIDNIHSASE 75 (190)
Q Consensus 1 M~k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~iikf~gi~s~~~A~~ 75 (190)
T Consensus 1 m~~~~~~~~vGkI~~t~Gi~GevrV~s~Td~~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~~~~i~kf~gi~dr~~ae~ 80 (174)
T COG0806 1 MTKPENLLLVGKIVSTHGIRGEVRVKSFTDFPESLFDYGPWLLLKPGGEWQELTVESVRKHKNLLILKFKGIDDRNAAEA 80 (174)
T ss_pred CCCCCCEEEEEEEEECCCCCEEEEEEECCCCHHHHCCCCCEEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHH
T ss_conf 99861028999997120434799999778898996286749994388853899999811159889999679799899997
Q ss_pred HCCCEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEEC-CCCCEEEEECHHHHCCEEE
Q ss_conf 349687741777886556410021452401136752584311998866579950899974-9982899875031001056
Q gi|254780713|r 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVN 154 (190)
Q Consensus 76 l~g~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~-~~~ke~lIP~v~~~I~~ID 154 (190)
T Consensus 81 l~G~~i~v~~~~~p--~l~EdEfY~~DLiG~~V~~~~g~~lG~V~~i~~~Ga~Dvl~V~~~~~~k~~LIPf~~~~V~~Vd 158 (174)
T COG0806 81 LKGYEIFVDRSELP--ELEEDEFYYHDLIGLEVVTEDGELLGKVTEILETGANDVLVVKAKGGKKERLIPFVDAVVKEVD 158 (174)
T ss_pred HCCCEEEEEHHHCC--CCCCCCEEEEEECCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCEEEECCHHHEEEEEE
T ss_conf 26958997889989--9889968957415839993798388999898647995199999468995699506576020796
Q ss_pred CCCCEEEEECCCCCCC
Q ss_conf 3397999952810038
Q gi|254780713|r 155 LQENKILIDPIAAGLN 170 (190)
Q Consensus 155 ~~~k~I~v~~p~Glld 170 (190)
T Consensus 159 ~~~k~I~v~~~~~ll~ 174 (174)
T COG0806 159 LEAKKIEVDPDEGLLD 174 (174)
T ss_pred CCCCEEEEECCCHHCC
T ss_conf 4887899724502039