HHsearch alignment for GI: 254780713 and conserved domain: PRK00122
>PRK00122 rimM 16S rRNA-processing protein; Provisional.
Probab=100.00 E-value=0 Score=307.45 Aligned_cols=164 Identities=30% Similarity=0.492 Sum_probs=153.4
Q ss_pred CCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE----CCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCC
Q ss_conf 20079999994463050599999418997787630102----07983799999997399799996387784556763496
Q gi|254780713|r 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDL 79 (190)
Q Consensus 4 ~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~ 79 (190)
T Consensus 1 ~~d~i~iG~i~~~hGlkGevki~~~t~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~k~~~i~~re~Ae~l~g~ 80 (168)
T PRK00122 1 PEDLVVVGKIVSAHGIKGEVKVKSFTDFPERRFDYGPWLLKKDGEPRPVEIESGRVHKKFLIVKFEGVDDRNAAEALKGT 80 (168)
T ss_pred CCCEEEEEEECCCEEECEEEEEEECCCCHHHHCCCCEEEEECCCCEEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCC
T ss_conf 98689999991988105799999987897995086729991699468998687999599999999588998999985398
Q ss_pred EEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCEEEEECHHHHCCEEECCCCE
Q ss_conf 87741777886556410021452401136752584311998866579950899974998289987503100105633979
Q gi|254780713|r 80 KLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159 (190)
Q Consensus 80 ~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ke~lIP~v~~~I~~ID~~~k~ 159 (190)
T Consensus 81 ~l~i~~~~lp--~l~~~e~y~~dLiG~~V~d~~~~~lG~V~~v~~~~a~d~l~i~~~~~ke~liP~~~~~i~~ID~~~k~ 158 (168)
T PRK00122 81 EIFVPRSQLP--ELEEDEYYWHDLIGLEVVTTEGEELGKVTDILETGANDVLVVKRPGGKERLIPFVEAVVKEVDLEAKR 158 (168)
T ss_pred EEEEEHHHCC--CCCCCCEEHHEECCCEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEECCHHCCCEEECCCCE
T ss_conf 7995288989--98788536212518699948996926999972169926999991899599997353100679778999
Q ss_pred EEEECCCCCC
Q ss_conf 9995281003
Q gi|254780713|r 160 ILIDPIAAGL 169 (190)
Q Consensus 160 I~v~~p~Gll 169 (190)
T Consensus 159 I~v~~peGLl 168 (168)
T PRK00122 159 IVVDWPEGLL 168 (168)
T ss_pred EEEECCCCCC
T ss_conf 9997964249