HHsearch alignment for GI: 254780713 and conserved domain: PRK13828
>PRK13828 rimM 16S rRNA-processing protein; Provisional.
Probab=100.00 E-value=0 Score=323.57 Aligned_cols=172 Identities=30% Similarity=0.549 Sum_probs=158.7
Q ss_pred CCCCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC--CCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
Q ss_conf 998200799999944630505999994189977876301020--798379999999739979999638778455676349
Q gi|254780713|r 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIATFSGIDNIHSASELRD 78 (190)
Q Consensus 1 M~k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g 78 (190)
T Consensus 1 M~--~d~i~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~~~~~~~~i~~~r~~~~~~ivkf~gi~~r~~Ae~l~g 78 (177)
T PRK13828 1 MM--TDRICVGRIGGAHGVRGEVRLKSFTEDPLAIADYGPLTTEDGARSFTVALARPAKDGLVARLKGVATREEAEALRG 78 (177)
T ss_pred CC--CCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
T ss_conf 97--6649999994999356599999978997896067738936998889999999979989999878899899998569
Q ss_pred CEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-CCCEEEEECHHHHCCEEECCC
Q ss_conf 6877417778865564100214524011367525843119988665799508999749-982899875031001056339
Q gi|254780713|r 79 LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQE 157 (190)
Q Consensus 79 ~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-~~ke~lIP~v~~~I~~ID~~~ 157 (190)
T Consensus 79 ~~i~i~~~~lp--~l~e~e~Y~~dLiGl~V~d~~g~~lG~V~~v~~~ga~dvl~V~~~~~~~~iLIP~v~~~V~~VD~~~ 156 (177)
T PRK13828 79 LELYVPRDRLP--SLDDDEFYHADLIGLAVVDTGGELLGRVKAVHNFGAGDILEITAPGGGPTLLLPFTRAVVPTVDLAG 156 (177)
T ss_pred CEEEEEHHHCC--CCCCCCEEHHHHCCCEEEECCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCC
T ss_conf 86999878888--8757869648827969992899898999998428995299999889995899835831017797789
Q ss_pred CEEEEECCCCCCCCCCCCC
Q ss_conf 7999952810038886547
Q gi|254780713|r 158 NKILIDPIAAGLNNTTMKN 176 (190)
Q Consensus 158 k~I~v~~p~Glld~~~~~~ 176 (190)
T Consensus 157 k~I~vd~PeGL~d~~~~~~ 175 (177)
T PRK13828 157 GRVVADPPAEIEGDDPEHS 175 (177)
T ss_pred CEEEEECCCCCCCCCCCCC
T ss_conf 9999989885468986667