HHsearch alignment for GI: 254780713 and conserved domain: PRK13828

>PRK13828 rimM 16S rRNA-processing protein; Provisional.
Probab=100.00  E-value=0  Score=323.57  Aligned_cols=172  Identities=30%  Similarity=0.549  Sum_probs=158.7

Q ss_pred             CCCCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC--CCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
Q ss_conf             998200799999944630505999994189977876301020--798379999999739979999638778455676349
Q gi|254780713|r    1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIATFSGIDNIHSASELRD   78 (190)
Q Consensus         1 M~k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g   78 (190)
T Consensus         1 M~--~d~i~iG~I~~~hGlkGevkv~~~td~p~~~~~~~~~~~~~~~~~~~i~~~r~~~~~~ivkf~gi~~r~~Ae~l~g   78 (177)
T PRK13828          1 MM--TDRICVGRIGGAHGVRGEVRLKSFTEDPLAIADYGPLTTEDGARSFTVALARPAKDGLVARLKGVATREEAEALRG   78 (177)
T ss_pred             CC--CCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
T ss_conf             97--6649999994999356599999978997896067738936998889999999979989999878899899998569


Q ss_pred             CEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-CCCEEEEECHHHHCCEEECCC
Q ss_conf             6877417778865564100214524011367525843119988665799508999749-982899875031001056339
Q gi|254780713|r   79 LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQE  157 (190)
Q Consensus        79 ~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-~~ke~lIP~v~~~I~~ID~~~  157 (190)
T Consensus        79 ~~i~i~~~~lp--~l~e~e~Y~~dLiGl~V~d~~g~~lG~V~~v~~~ga~dvl~V~~~~~~~~iLIP~v~~~V~~VD~~~  156 (177)
T PRK13828         79 LELYVPRDRLP--SLDDDEFYHADLIGLAVVDTGGELLGRVKAVHNFGAGDILEITAPGGGPTLLLPFTRAVVPTVDLAG  156 (177)
T ss_pred             CEEEEEHHHCC--CCCCCCEEHHHHCCCEEEECCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCC
T ss_conf             86999878888--8757869648827969992899898999998428995299999889995899835831017797789


Q ss_pred             CEEEEECCCCCCCCCCCCC
Q ss_conf             7999952810038886547
Q gi|254780713|r  158 NKILIDPIAAGLNNTTMKN  176 (190)
Q Consensus       158 k~I~v~~p~Glld~~~~~~  176 (190)
T Consensus       157 k~I~vd~PeGL~d~~~~~~  175 (177)
T PRK13828        157 GRVVADPPAEIEGDDPEHS  175 (177)
T ss_pred             CEEEEECCCCCCCCCCCCC
T ss_conf             9999989885468986667