HHsearch alignment for GI: 254780713 and conserved domain: PRK13829
>PRK13829 rimM 16S rRNA-processing protein; Provisional.
Probab=100.00 E-value=0 Score=298.53 Aligned_cols=167 Identities=18% Similarity=0.322 Sum_probs=148.3
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHC-CEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEC
Q ss_conf 079999994463050599999418997787630-1020798379999999739979999638778455676349687741
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAK 84 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~ 84 (190)
T Consensus 6 dlv~IG~I~~~hGlkGevkv~~~tdp-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iv~~~gi~dr~~Ae~l~g~~l~i~ 84 (177)
T PRK13829 6 DLTRLGRFLGPHGVQGGLKFYVLGDP-VQVLALERVYVEGHGWLAIRRLERVGPELVLHLAGVTSRELAEALRGLRVYAE 84 (177)
T ss_pred CEEEEEEEECCEEECEEEEEEECCCH-HHHHCCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEE
T ss_conf 58999999599925769999988893-89705674698489879999999989869999979799899997329999988
Q ss_pred HHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCEEEEECHHHHCC----EEECCCCEE
Q ss_conf 7778865564100214524011367525843119988665799508999749982899875031001----056339799
Q gi|254780713|r 85 RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVL----EVNLQENKI 160 (190)
Q Consensus 85 ~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ke~lIP~v~~~I~----~ID~~~k~I 160 (190)
T Consensus 85 ~~~LP--~l~e~EyY~~dLiGl~V~~~~g~~lG~V~~v~~~gA~DvlvV~~~-~~e~lIP~v~~~V~~~~~~~~~~~~~i 161 (177)
T PRK13829 85 DADLP--PLEEGRYYYHALRGLPVYGAEGRQLGEVVDVLDAGHQDLLVVRGV-GGERFVPLQAPYVRVEEGGGKPGAVHL 161 (177)
T ss_pred HHHCC--CCCCCCEEEHHCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCEEEEEECCCCEEECEE
T ss_conf 88989--999997990453798999489979899979801799529999879-988999664266888704552000789
Q ss_pred EEECCCCCCCCCCCCC
Q ss_conf 9952810038886547
Q gi|254780713|r 161 LIDPIAAGLNNTTMKN 176 (190)
Q Consensus 161 ~v~~p~Glld~~~~~~ 176 (190)
T Consensus 162 ~idpp~GL~dd~~~~~ 177 (177)
T PRK13829 162 TADAPAGLFGDGAAES 177 (177)
T ss_pred EEECCCCCCCCCCCCC
T ss_conf 9969796668765569