HHsearch alignment for GI: 254780713 and conserved domain: PRK13829

>PRK13829 rimM 16S rRNA-processing protein; Provisional.
Probab=100.00  E-value=0  Score=298.53  Aligned_cols=167  Identities=18%  Similarity=0.322  Sum_probs=148.3

Q ss_pred             CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHC-CEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEC
Q ss_conf             079999994463050599999418997787630-1020798379999999739979999638778455676349687741
Q gi|254780713|r    6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAK   84 (190)
Q Consensus         6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~   84 (190)
T Consensus         6 dlv~IG~I~~~hGlkGevkv~~~tdp-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iv~~~gi~dr~~Ae~l~g~~l~i~   84 (177)
T PRK13829          6 DLTRLGRFLGPHGVQGGLKFYVLGDP-VQVLALERVYVEGHGWLAIRRLERVGPELVLHLAGVTSRELAEALRGLRVYAE   84 (177)
T ss_pred             CEEEEEEEECCEEECEEEEEEECCCH-HHHHCCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEE
T ss_conf             58999999599925769999988893-89705674698489879999999989869999979799899997329999988


Q ss_pred             HHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCEEEEECHHHHCC----EEECCCCEE
Q ss_conf             7778865564100214524011367525843119988665799508999749982899875031001----056339799
Q gi|254780713|r   85 RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVL----EVNLQENKI  160 (190)
Q Consensus        85 ~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ke~lIP~v~~~I~----~ID~~~k~I  160 (190)
T Consensus        85 ~~~LP--~l~e~EyY~~dLiGl~V~~~~g~~lG~V~~v~~~gA~DvlvV~~~-~~e~lIP~v~~~V~~~~~~~~~~~~~i  161 (177)
T PRK13829         85 DADLP--PLEEGRYYYHALRGLPVYGAEGRQLGEVVDVLDAGHQDLLVVRGV-GGERFVPLQAPYVRVEEGGGKPGAVHL  161 (177)
T ss_pred             HHHCC--CCCCCCEEEHHCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCEEEEEECCCCEEECEE
T ss_conf             88989--999997990453798999489979899979801799529999879-988999664266888704552000789


Q ss_pred             EEECCCCCCCCCCCCC
Q ss_conf             9952810038886547
Q gi|254780713|r  161 LIDPIAAGLNNTTMKN  176 (190)
Q Consensus       161 ~v~~p~Glld~~~~~~  176 (190)
T Consensus       162 ~idpp~GL~dd~~~~~  177 (177)
T PRK13829        162 TADAPAGLFGDGAAES  177 (177)
T ss_pred             EEECCCCCCCCCCCCC
T ss_conf             9969796668765569