HHsearch alignment of GI: 254780713 and MMDB domain: 2dyi_A_1-87
>2dyi_A (A:1-87) Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 2dog_A
Probab=99.84 E-value=1.3e-20 Score=135.55 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=77.2
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEECH
Q ss_conf 07999999446305059999941899778763010207983799999997399799996387784556763496877417
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR 85 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~~ 85 (190)
+|+.+|+|++|||+|||+|+.|+||.++. ...+....++++|++++.+++.++++|+||+||++|++|+|+.+|+++
T Consensus 2 d~i~iG~I~~~hGikG~lkv~~~td~~~~---~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~~~e~Ae~l~g~~l~i~~ 78 (87)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRFRGEPVVLHL---ERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEV 78 (87)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECGGGGGC---SEEEETTTEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEEEEEG
T ss_pred EEEEEEEEECCEEEEEEEEEECCHHHCCC---CCEEEECCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEEE
T ss_conf 29999999399966349999867664666---516996996699999999899799998578977898863697899730
Q ss_pred HHCCCCCCCCC
Q ss_conf 77886556410
Q gi|254780713|r 86 QDFKDEELEED 96 (190)
Q Consensus 86 ~~lp~~~l~~~ 96 (190)
+++| +|++|
T Consensus 79 ~~lp--~L~eG 87 (87)
T 2dyi_A 79 ADLP--PLEEG 87 (87)
T ss_dssp GGSC--CCCTT
T ss_pred CCCC--CCCCC
T ss_conf 3478--74234