HHsearch alignment of GI: 254780713 and MMDB domain: 3h9n_A_1-93

>3h9n_A (A:1-93) Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=99.85  E-value=1e-21  Score=141.68  Aligned_cols=89  Identities=20%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE----CCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEE
Q ss_conf             079999994463050599999418997787630102----0798379999999739979999638778455676349687
Q gi|254780713|r    6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL   81 (190)
Q Consensus         6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i   81 (190)
                      ||+.+|+|++|||+|||+|++|+|++|+.+.++..+    .....++.+++++.+++.++++|++|+||++|++|+|+.+
T Consensus         1 d~i~iG~I~~~hGikG~vkv~~~td~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~i~kf~~i~~~~~A~~l~g~~i   80 (93)
T 3h9n_A            1 HIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILANVEI   80 (93)
T ss_dssp             CEEEEEEEEEECSSSSCEEEEECSSSSGGGGGCCSEEEEETTEEEEECEEEEEESSSCEEEEESSCCSHHHHHTTTTCEE
T ss_pred             CEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHEE
T ss_conf             95999999099951669999997899899727883786037983166789999809879999648897668988654210


Q ss_pred             EECHHHCCCCCCCCC
Q ss_conf             741777886556410
Q gi|254780713|r   82 YAKRQDFKDEELEED   96 (190)
Q Consensus        82 ~i~~~~lp~~~l~~~   96 (190)
                      |+++++||  +|++|
T Consensus        81 ~i~~~~lp--~l~eG   93 (93)
T 3h9n_A           81 GVDLSVFP--ELEEG   93 (93)
T ss_dssp             EEECCCCC--CCSSS
T ss_pred             EHHHHCCC--CCCCC
T ss_conf             00022044--54345