HHsearch results for GI: 254780713 and protein with PDBid: 2dyi_A
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=0 Score=277.37 Aligned_cols=156 Identities=23% Similarity=0.396 Sum_probs=139.4
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEECH
Q ss_conf 07999999446305059999941899778763010207983799999997399799996387784556763496877417
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR 85 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~~ 85 (190)
+++.||+|++|||+|||+++++.++. +....++.....++.+++++.++++++++|+|++||++|++|+|+.+|+++
T Consensus 2 ~li~iG~i~~~hGlkGevkv~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ivk~~gi~~r~~Ae~l~g~~l~v~~ 78 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRFRGEPVV---LHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEV 78 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECGGG---GGCSEEEETTTEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEEEEEG
T ss_pred EEEEEEEEECCEEEEEEEEEECCHHH---CCCCCEEEECCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEEC
T ss_conf 49999999499955369999856676---166517996996799999999899999999898998999974897899971
Q ss_pred HHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-----CCCEEEEECHHHHCCEEECCCCEE
Q ss_conf 778865564100214524011367525843119988665799508999749-----982899875031001056339799
Q gi|254780713|r 86 QDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKI 160 (190)
Q Consensus 86 ~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-----~~ke~lIP~v~~~I~~ID~~~k~I 160 (190)
++|| +|+++||||+|||||+|++ +|+.+|+|++++++||||+|+|++. +++|+||||++++ ||+++++|
T Consensus 79 ~~lp--~l~e~e~y~~dLiG~~V~~-~g~~lG~V~~v~~~ga~dvl~I~~~~~~~~~~ke~lIP~v~~~---Vd~~~~~I 152 (162)
T 2dyi_A 79 ADLP--PLEEGRYYYFALIGLPVYV-EGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPY---VRVEEGSI 152 (162)
T ss_dssp GGSC--CCCTTCCCHHHHTTCEEEE-TTEEEEEEEEEEEETTEEEEEEEECCSSGGGSTTEEEETTCTT---EEECSSCE
T ss_pred CCCC--CCCCCCEEHHHHCCEEEEE-CCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCE---EECCCCEE
T ss_conf 4058--8778839717727809999-9917499989933699409999707755779979998454888---97769999
Q ss_pred EEECCCCCCC
Q ss_conf 9952810038
Q gi|254780713|r 161 LIDPIAAGLN 170 (190)
Q Consensus 161 ~v~~p~Glld 170 (190)
+|+||+||||
T Consensus 153 ~v~~peGLld 162 (162)
T 2dyi_A 153 HVDPIPGLFD 162 (162)
T ss_dssp EECCCTTTCC
T ss_pred EEECCCCCCC
T ss_conf 9979996779