HHsearch results for GI: 254780713 and protein with PDBid: 2qgg_A
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=0 Score=289.94 Aligned_cols=164 Identities=16% Similarity=0.321 Sum_probs=148.1
Q ss_pred CCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC--C--CCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
Q ss_conf 8200799999944630505999994189977876301020--7--98379999999739979999638778455676349
Q gi|254780713|r 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--N--DNRELRILKMYRKNKRFIATFSGIDNIHSASELRD 78 (190)
Q Consensus 3 k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g 78 (190)
..++|+.||+|++|||+||+++|+++|++++.+.++..+. . ...++.+++++.++++++++|+|++||++|+.|+|
T Consensus 7 ~ped~i~iG~I~~~hGlkGevkv~~~td~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~k~~gi~~r~~Ae~l~g 86 (182)
T 2qgg_A 7 VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRWKPHGKGLVVSLKGVSDRTGAESLVA 86 (182)
T ss_dssp CCSSEEEEEEEEEEETTTTEEEEEECSSSGGGGGGSSSEEEEETTEEEEECEEEEEEETTEEEEEETTCCSHHHHHTTTT
T ss_pred CCCCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHC
T ss_conf 97578999999098941779999996889899608771999715980799999999706479999669899999988519
Q ss_pred CEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEEC----CCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHC
Q ss_conf 6877417778865564100214524011367525----843119988665799508999749----98289987503100
Q gi|254780713|r 79 LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ----GKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAV 150 (190)
Q Consensus 79 ~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~----~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I 150 (190)
+.+|+++++|| +|+++||||+|||||+|++.+ |+.+|+|++|+++||||+|+|++. ++||+||||+++||
T Consensus 87 ~~l~i~~~~lp--~l~~~e~y~~dLiG~~V~~~~~~e~g~~lG~V~~v~~~ga~dll~V~~~~~~~~~ke~lIP~~~~~V 164 (182)
T 2qgg_A 87 SNIWIAKSQLP--KADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVV 164 (182)
T ss_dssp CEEEEETTCCC--CCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEECCTTTE
T ss_pred CEEEEEHHHCC--CCCCCCEEHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCHHCC
T ss_conf 78995132388--8788929858837869995456656858899999803799139999715778999599998663102
Q ss_pred CEEECCCCEEEEECCCCC
Q ss_conf 105633979999528100
Q gi|254780713|r 151 LEVNLQENKILIDPIAAG 168 (190)
Q Consensus 151 ~~ID~~~k~I~v~~p~Gl 168 (190)
.+||+++|+|+||+|+++
T Consensus 165 ~~ID~~~k~I~Vd~p~d~ 182 (182)
T 2qgg_A 165 QRVDLEAGRIYVNWGVDY 182 (182)
T ss_dssp EEEETTTTEEEESCCCC-
T ss_pred CEEECCCCEEEEECCCCC
T ss_conf 879778999999189999