Query gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 117 out of 1571
Neff 6.9
Searched_HMMs 23785
Date Tue May 31 17:32:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780713.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1l_A 16S rRNA processing pro 100.0 0 0 295.8 18.3 164 3-168 16-187 (187)
2 3h9n_A Ribosome maturation fac 100.0 0 0 295.8 17.1 165 7-173 2-176 (177)
3 2qgg_A 16S rRNA-processing pro 100.0 0 0 289.9 17.4 164 3-168 7-182 (182)
4 2dyi_A Probable 16S rRNA-proce 100.0 0 0 277.4 17.9 156 6-170 2-162 (162)
5 1eys_H Photosynthetic reaction 97.0 0.0023 9.8E-08 37.6 7.2 89 78-169 112-219 (259)
6 1rzh_H Reaction center protein 96.7 0.0067 2.8E-07 35.0 7.9 58 101-163 146-206 (260)
7 1pm3_A MTH1895; unknown functi 96.5 0.0046 1.9E-07 35.9 5.6 62 100-166 24-96 (97)
8 3htr_A Uncharacterized PRC-bar 95.9 0.024 9.9E-07 31.9 6.9 70 100-172 17-94 (120)
9 2wjn_H Reaction center protein 95.1 0.026 1.1E-06 31.7 4.8 82 77-163 112-211 (258)
10 1sqr_A 50S ribosomal protein L 81.2 1.5 6.4E-05 21.7 4.0 27 57-83 19-45 (95)
11 2hvy_B GAR1, small nucleolar R 74.9 3.6 0.00015 19.6 4.5 52 105-168 34-85 (104)
12 2ey4_C Small nucleolar RNP sim 67.7 5.7 0.00024 18.5 4.1 34 104-137 33-66 (82)
13 1byw_A Protein (human ERG pota 25.8 29 0.0012 14.5 2.0 32 93-124 75-106 (110)
14 2eqn_A Hypothetical protein LO 25.4 32 0.0013 14.3 4.1 33 105-137 53-85 (103)
15 1n9l_A PHOT-LOV1, putative blu 22.3 37 0.0015 14.0 2.4 31 94-124 76-106 (109)
No 1
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=100.00 E-value=0 Score=295.78 Aligned_cols=164 Identities=23% Similarity=0.388 Sum_probs=150.3
Q ss_pred CCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC----CCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
Q ss_conf 8200799999944630505999994189977876301020----798379999999739979999638778455676349
Q gi|254780713|r 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIATFSGIDNIHSASELRD 78 (190)
Q Consensus 3 k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g 78 (190)
+.++|+.||+|++|||+|||++|+++|++++++.++..+. ....++.+++++.+++.++++|++++||++|+.|+|
T Consensus 16 ~~dd~i~iG~I~~~hGlkGevkv~~~td~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~k~~gi~~re~Ae~L~g 95 (187)
T 2f1l_A 16 PADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTG 95 (187)
T ss_dssp ---CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTT
T ss_pred CCCCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHCC
T ss_conf 97887999999298953779999998789799617776999608958899999998427589998469699899997449
Q ss_pred CEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHCCEEE
Q ss_conf 6877417778865564100214524011367525843119988665799508999749----982899875031001056
Q gi|254780713|r 79 LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVN 154 (190)
Q Consensus 79 ~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I~~ID 154 (190)
+.||+++++|| +|+++||||+|||||+|++.+++.+|+|.+++++||||+|+|+.. ++||+||||+++||.+||
T Consensus 96 ~~l~i~~~~lp--~l~e~E~y~~dLiG~~V~~~~~~~lG~V~~v~~~ga~dll~I~~~~~~~~~ke~LIPf~~~~V~~VD 173 (187)
T 2f1l_A 96 YEICIPRSELP--SLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSID 173 (187)
T ss_dssp CEEEEEGGGSC--C-----CCHHHHTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEE
T ss_pred CEEEECHHHCC--CCCCCCEEHHHHCCCEEEECCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCHHHCCEEE
T ss_conf 87995054588--7778824345635819997899788999999568993499998578888982999866731138897
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 33979999528100
Q gi|254780713|r 155 LQENKILIDPIAAG 168 (190)
Q Consensus 155 ~~~k~I~v~~p~Gl 168 (190)
+++|+|+||+|+++
T Consensus 174 ~~~k~I~Vdw~~d~ 187 (187)
T 2f1l_A 174 LAAGEMRVDWDADF 187 (187)
T ss_dssp TTTTEEEECCCTTC
T ss_pred CCCCEEEEECCCCC
T ss_conf 88999999589999
No 2
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=100.00 E-value=0 Score=295.78 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=150.3
Q ss_pred EEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEE----CCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEE
Q ss_conf 79999994463050599999418997787630102----07983799999997399799996387784556763496877
Q gi|254780713|r 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLY 82 (190)
Q Consensus 7 ~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~ 82 (190)
+-.||+|++|||+|||++++++|++|+.+.++..+ .....++.+++++.++++++++|+|++||++|++|+|+.+|
T Consensus 2 ~~VIGkI~~~hGlkGevkv~~~td~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ivk~~gi~~r~~Ae~l~g~~l~ 81 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILANVEIG 81 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGGGGGCCSEEEEETTEEEEECEEEEEESSSCEEEEESSCCSHHHHHTTTTCEEE
T ss_pred CEEEEEEECCEECCEEEEEEECCCCHHHHHCCCCEEEECCCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHCEEE
T ss_conf 29999991999518899999967998997188818971599689999999997299899999877998999974102440
Q ss_pred ECHHHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-----CCCEEEEECH-HHHCCEEECC
Q ss_conf 417778865564100214524011367525843119988665799508999749-----9828998750-3100105633
Q gi|254780713|r 83 AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQ 156 (190)
Q Consensus 83 i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-----~~ke~lIP~v-~~~I~~ID~~ 156 (190)
++++++| +++++||||+||+||+|+|.+|+.+|+|.+|+++||||+|+|+++ ++||+||||+ ++||.+||.+
T Consensus 82 i~~~~lp--~l~e~e~y~~dLiG~~V~d~~g~~lG~V~~v~~~~a~dll~V~~~~~~~~~~ke~LIPfv~~~~V~~ID~~ 159 (177)
T 3h9n_A 82 VDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLT 159 (177)
T ss_dssp EECCCCC--CCSSSCGGGGGTTTCEEEETTCCEEEEEEEEEESSSCEEEEEECCTTCTTCCSEEEEECCBTTTEEEEEGG
T ss_pred CCHHHCC--CCCCCCEEHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCEEEECC
T ss_conf 4877976--54577455256468499966896057993981069923999992886677983899733752575079778
Q ss_pred CCEEEEECCCCCCCCCC
Q ss_conf 97999952810038886
Q gi|254780713|r 157 ENKILIDPIAAGLNNTT 173 (190)
Q Consensus 157 ~k~I~v~~p~Glld~~~ 173 (190)
+|+|+|+||+||||+..
T Consensus 160 ~k~I~v~~peGlld~~~ 176 (177)
T 3h9n_A 160 TKTIEVDWDAGFLEHHH 176 (177)
T ss_dssp GTEEEECCCSSTTCCCC
T ss_pred CCEEEEECCCCHHHCCC
T ss_conf 99999989803655167
No 3
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=0 Score=289.94 Aligned_cols=164 Identities=16% Similarity=0.321 Sum_probs=148.1
Q ss_pred CCCCEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEEC--C--CCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCC
Q ss_conf 8200799999944630505999994189977876301020--7--98379999999739979999638778455676349
Q gi|254780713|r 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--N--DNRELRILKMYRKNKRFIATFSGIDNIHSASELRD 78 (190)
Q Consensus 3 k~~~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g 78 (190)
..++|+.||+|++|||+||+++|+++|++++.+.++..+. . ...++.+++++.++++++++|+|++||++|+.|+|
T Consensus 7 ~ped~i~iG~I~~~hGlkGevkv~~~td~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~k~~gi~~r~~Ae~l~g 86 (182)
T 2qgg_A 7 VPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRWKPHGKGLVVSLKGVSDRTGAESLVA 86 (182)
T ss_dssp CCSSEEEEEEEEEEETTTTEEEEEECSSSGGGGGGSSSEEEEETTEEEEECEEEEEEETTEEEEEETTCCSHHHHHTTTT
T ss_pred CCCCEEEEEEEECCEEECEEEEEEECCCCHHHHHCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHC
T ss_conf 97578999999098941779999996889899608771999715980799999999706479999669899999988519
Q ss_pred CEEEECHHHCCCCCCCCCCCCHHHHHCCEEEEEC----CCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHC
Q ss_conf 6877417778865564100214524011367525----843119988665799508999749----98289987503100
Q gi|254780713|r 79 LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ----GKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAV 150 (190)
Q Consensus 79 ~~i~i~~~~lp~~~l~~~e~Y~~dLiG~~V~d~~----~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I 150 (190)
+.+|+++++|| +|+++||||+|||||+|++.+ |+.+|+|++|+++||||+|+|++. ++||+||||+++||
T Consensus 87 ~~l~i~~~~lp--~l~~~e~y~~dLiG~~V~~~~~~e~g~~lG~V~~v~~~ga~dll~V~~~~~~~~~ke~lIP~~~~~V 164 (182)
T 2qgg_A 87 SNIWIAKSQLP--KADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVV 164 (182)
T ss_dssp CEEEEETTCCC--CCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCSSSSSSCCEEEECCTTTE
T ss_pred CEEEEEHHHCC--CCCCCCEEHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCHHCC
T ss_conf 78995132388--8788929858837869995456656858899999803799139999715778999599998663102
Q ss_pred CEEECCCCEEEEECCCCC
Q ss_conf 105633979999528100
Q gi|254780713|r 151 LEVNLQENKILIDPIAAG 168 (190)
Q Consensus 151 ~~ID~~~k~I~v~~p~Gl 168 (190)
.+||+++|+|+||+|+++
T Consensus 165 ~~ID~~~k~I~Vd~p~d~ 182 (182)
T 2qgg_A 165 QRVDLEAGRIYVNWGVDY 182 (182)
T ss_dssp EEEETTTTEEEESCCCC-
T ss_pred CEEECCCCEEEEECCCCC
T ss_conf 879778999999189999
No 4
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=0 Score=277.37 Aligned_cols=156 Identities=23% Similarity=0.396 Sum_probs=139.4
Q ss_pred CEEEEEEEECCCEEEEEEEEEECCCCHHHHHHCCEECCCCEEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEECH
Q ss_conf 07999999446305059999941899778763010207983799999997399799996387784556763496877417
Q gi|254780713|r 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR 85 (190)
Q Consensus 6 ~~i~iGkI~k~hGlkGevki~~~td~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~iikf~gi~s~~~A~~l~g~~i~i~~ 85 (190)
+++.||+|++|||+|||+++++.++. +....++.....++.+++++.++++++++|+|++||++|++|+|+.+|+++
T Consensus 2 ~li~iG~i~~~hGlkGevkv~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ivk~~gi~~r~~Ae~l~g~~l~v~~ 78 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRFRGEPVV---LHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEV 78 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECGGG---GGCSEEEETTTEEEEEEEEEEETTEEEEEETTCCSHHHHHTTTTCEEEEEG
T ss_pred EEEEEEEEECCEEEEEEEEEECCHHH---CCCCCEEEECCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHCCCEEEEEC
T ss_conf 49999999499955369999856676---166517996996799999999899999999898998999974897899971
Q ss_pred HHCCCCCCCCCCCCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC-----CCCEEEEECHHHHCCEEECCCCEE
Q ss_conf 778865564100214524011367525843119988665799508999749-----982899875031001056339799
Q gi|254780713|r 86 QDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKI 160 (190)
Q Consensus 86 ~~lp~~~l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~-----~~ke~lIP~v~~~I~~ID~~~k~I 160 (190)
++|| +|+++||||+|||||+|++ +|+.+|+|++++++||||+|+|++. +++|+||||++++ ||+++++|
T Consensus 79 ~~lp--~l~e~e~y~~dLiG~~V~~-~g~~lG~V~~v~~~ga~dvl~I~~~~~~~~~~ke~lIP~v~~~---Vd~~~~~I 152 (162)
T 2dyi_A 79 ADLP--PLEEGRYYYFALIGLPVYV-EGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPY---VRVEEGSI 152 (162)
T ss_dssp GGSC--CCCTTCCCHHHHTTCEEEE-TTEEEEEEEEEEEETTEEEEEEEECCSSGGGSTTEEEETTCTT---EEECSSCE
T ss_pred CCCC--CCCCCCEEHHHHCCEEEEE-CCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCE---EECCCCEE
T ss_conf 4058--8778839717727809999-9917499989933699409999707755779979998454888---97769999
Q ss_pred EEECCCCCCC
Q ss_conf 9952810038
Q gi|254780713|r 161 LIDPIAAGLN 170 (190)
Q Consensus 161 ~v~~p~Glld 170 (190)
+|+||+||||
T Consensus 153 ~v~~peGLld 162 (162)
T 2dyi_A 153 HVDPIPGLFD 162 (162)
T ss_dssp EECCCTTTCC
T ss_pred EEECCCCCCC
T ss_conf 9979996779
No 5
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=96.99 E-value=0.0023 Score=37.58 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=62.2
Q ss_pred CCEEEECHHHCCCCCC----------CCCCCCHH----HHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECC-CCC
Q ss_conf 9687741777886556----------41002145----2401136752584311998866-57995--08999749-982
Q gi|254780713|r 78 DLKLYAKRQDFKDEEL----------EEDEFFNT----DLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNT-MEK 139 (190)
Q Consensus 78 g~~i~i~~~~lp~~~l----------~~~e~Y~~----dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~-~~k 139 (190)
|---|.+|.+.|+... ...+|.++ |+.|+.|++.+|+.+|+|.+++ +...+ -.++|++. .++
T Consensus 112 Gpas~a~R~d~pdl~~~g~pkivPmr~~~~~~v~~gd~DprG~~V~g~DGe~iG~V~Dv~VD~~e~~vRYleVdtG~ggr 191 (259)
T 1eys_H 112 GPAASPDRPKHCDLTFEGLPKIVPMRVAKEFSIAEGDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVAANKK 191 (259)
T ss_dssp GGGCCCCCCSSCCBCSSCSBSSEETTTSTTCEECTTSCCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 72015566888766789985688630379836607998988998588999862367789997898968899999557998
Q ss_pred EEEEECHHHHCCEEECCCCEEEEE-CCCCCC
Q ss_conf 899875031001056339799995-281003
Q gi|254780713|r 140 TFLIPFTKFAVLEVNLQENKILID-PIAAGL 169 (190)
Q Consensus 140 e~lIP~v~~~I~~ID~~~k~I~v~-~p~Gll 169 (190)
.+|||+. ...+|...+.+.|+ +-.--+
T Consensus 192 ~vLvP~~---~a~id~~~~~V~VdsLt~~Qf 219 (259)
T 1eys_H 192 KVLLPIG---FSRFDKKARKVKVDAIKAAHF 219 (259)
T ss_dssp EEEEEGG---GCEEEGGGTEEECSSSCGGGG
T ss_pred EEEEECC---CCEECCCCCEEEEECCCHHHH
T ss_conf 8998441---337737889899923278998
No 6
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=96.73 E-value=0.0067 Score=35.00 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.3
Q ss_pred HHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECCCCCEEEEECHHHHCCEEECCCCEEEEE
Q ss_conf 52401136752584311998866-57995--08999749982899875031001056339799995
Q gi|254780713|r 101 TDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163 (190)
Q Consensus 101 ~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~~~ke~lIP~v~~~I~~ID~~~k~I~v~ 163 (190)
.|.+|+.|+..+|+.+|+|.++. +...+ -.|+|++..++.+|+|+.-. .|+ ++.+.|+
T Consensus 146 ~DPrG~~Vvg~DGe~iGtV~DlwVD~~E~~iRYLeVdtgggk~vLvP~~~a---ri~--~~~V~V~ 206 (260)
T 1rzh_H 146 KNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMV---KVQ--SNRVHVN 206 (260)
T ss_dssp CCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEECTTSCEEEEEGGGC---EEC--SSCEEES
T ss_pred CCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEECCEEE---EEC--CCEEEEE
T ss_conf 887898527789884237889998088776889999969981898422443---847--9828982
No 7
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=96.47 E-value=0.0046 Score=35.91 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=44.8
Q ss_pred HHHHHCCEEEEECCCEEEEEEEEE-ECCCCE--EEEEECC--------CCCEEEEECHHHHCCEEECCCCEEEEECCC
Q ss_conf 452401136752584311998866-579950--8999749--------982899875031001056339799995281
Q gi|254780713|r 100 NTDLEEMETFDRQGKYWGQVCGVY-NFGAGS--ILEIKNT--------MEKTFLIPFTKFAVLEVNLQENKILIDPIA 166 (190)
Q Consensus 100 ~~dLiG~~V~d~~~~~iG~V~~v~-~~~a~d--il~V~~~--------~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~ 166 (190)
..||+|.+|++.+|..||+|.++. +...+- -|+|... .++++.||| +.|..|- ..|+|..|+
T Consensus 24 ~~eL~Gk~Vit~~G~~LG~V~Dv~iD~~tG~I~~LiV~~~~~~~~~~~~~~~v~IP~--~~V~~IG---D~Viv~~~e 96 (97)
T 1pm3_A 24 VEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPY--EMVKKIG---DKILLKGPE 96 (97)
T ss_dssp TTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEG--GGEEEES---SSEEECCTT
T ss_pred HHHHCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEH--HHEEEEC---CEEEEECCC
T ss_conf 788599977999998985898899968999999999927982112135883699716--9949989---999992699
No 8
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=95.92 E-value=0.024 Score=31.92 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHCCEEEEECCCEEEEEEEEE-EC-CCC-EEEEEECC-----CCCEEEEECHHHHCCEEECCCCEEEEECCCCCCCC
Q ss_conf 452401136752584311998866-57-995-08999749-----98289987503100105633979999528100388
Q gi|254780713|r 100 NTDLEEMETFDRQGKYWGQVCGVY-NF-GAG-SILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171 (190)
Q Consensus 100 ~~dLiG~~V~d~~~~~iG~V~~v~-~~-~a~-dil~V~~~-----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Glld~ 171 (190)
-++|+|++|++.+|+.||+|.+++ +. .+. ..++|..- .++.+.+|+. ...++...+.+.++...--+.+
T Consensus 17 a~~l~G~~V~~~dG~~iG~V~dv~id~~~g~i~~~vV~~Gg~lg~g~k~v~vp~~---~~~~~~~~~~~~l~~t~~~~~~ 93 (120)
T 3htr_A 17 SDKVQGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWP---ALKYNVELGGYQVMVTVDQLER 93 (120)
T ss_dssp HHHHTTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGG---GCEEETTTTEEECCCCHHHHHT
T ss_pred CCCCCCCEEECCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEECCHH---HHCCCCCCCEEEECCCHHHHHC
T ss_conf 0103498789799898888889999889995889999607754579865657889---9000366898994498999952
Q ss_pred C
Q ss_conf 8
Q gi|254780713|r 172 T 172 (190)
Q Consensus 172 ~ 172 (190)
.
T Consensus 94 a 94 (120)
T 3htr_A 94 A 94 (120)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 9
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H*
Probab=95.10 E-value=0.026 Score=31.71 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=52.9
Q ss_pred CCCEEEECHHHCCCCCC----------CCCCCCH----HHHHCCEEEEECCCEEEEEEEEE-ECCCC--EEEEEECC-CC
Q ss_conf 49687741777886556----------4100214----52401136752584311998866-57995--08999749-98
Q gi|254780713|r 77 RDLKLYAKRQDFKDEEL----------EEDEFFN----TDLEEMETFDRQGKYWGQVCGVY-NFGAG--SILEIKNT-ME 138 (190)
Q Consensus 77 ~g~~i~i~~~~lp~~~l----------~~~e~Y~----~dLiG~~V~d~~~~~iG~V~~v~-~~~a~--dil~V~~~-~~ 138 (190)
+|---|.+|.+.|+... ...+|.+ .|+.|+.|++.+|+.+|+|.+++ +...+ -.++|+.. .+
T Consensus 112 vGpaswa~R~d~pdl~~~g~pki~Pmr~~~~~~v~~~d~DprG~~V~g~DGekIGtV~DvwVD~~e~~vRYleVdtGgg~ 191 (258)
T 2wjn_H 112 VGPASYAERAEVVDATVDGKAKIVPLRVATDFSIAEGDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSVAGSA 191 (258)
T ss_dssp CGGGCCCCCCSSBCBCTTSSBSEEETTTCTTCEECTTSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 47422445688986678998468863037984642799998999758789985789989999789883899999928878
Q ss_pred CEEEEECHHHHCCEEECCCCEEEEE
Q ss_conf 2899875031001056339799995
Q gi|254780713|r 139 KTFLIPFTKFAVLEVNLQENKILID 163 (190)
Q Consensus 139 ke~lIP~v~~~I~~ID~~~k~I~v~ 163 (190)
|++|+|+.-. .++ ...+.|+
T Consensus 192 k~vLvP~~~a---~i~--~d~V~V~ 211 (258)
T 2wjn_H 192 RTALIPLGFC---DVK--KDKIVVT 211 (258)
T ss_dssp EEEEEEGGGC---EEC--SSCEECC
T ss_pred CCEEEEHHHC---EEC--CCCEEEE
T ss_conf 6168661463---675--8928980
No 10
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3
Probab=81.17 E-value=1.5 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=24.5
Q ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
Q ss_conf 997999963877845567634968774
Q gi|254780713|r 57 NKRFIATFSGIDNIHSASELRDLKLYA 83 (190)
Q Consensus 57 ~~~~iikf~gi~s~~~A~~l~g~~i~i 83 (190)
.+..+++++|++++++|+.+.|+.+..
T Consensus 19 ~n~aLlkiegv~~k~~a~fylGKrv~y 45 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHCCCEEEE
T ss_conf 987999876967878978644847999
No 11
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase/biosynthetic protein/RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=74.92 E-value=3.6 Score=19.61 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=36.4
Q ss_pred CCEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf 1136752584311998866579950899974998289987503100105633979999528100
Q gi|254780713|r 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168 (190)
Q Consensus 105 G~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl 168 (190)
|..|+++++..||+|.+|+-.-.++++.|+.... . |. .+ ....+.+.+....
T Consensus 34 gs~v~~~~~~~IGkV~dVfGpv~~Py~~v~~~~~-~---~~--~~------iG~~vyi~~~~~~ 85 (104)
T 2hvy_B 34 NDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVS-N---PE--IY------VGEVLYVDERKRK 85 (104)
T ss_dssp TCEEECTTCCEEEEEEEEEEESSSCEEEEEECSS-C---GG--GG------TTCEEEECC----
T ss_pred CCEEEECCCCEEEEEEEEECCCCCCEEEEEECCC-C---HH--HH------CCCEEEEECCCCC
T ss_conf 9999914997989998999888985899996788-8---26--75------7975999467457
No 12
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structure initiative; 2.11A {Pyrococcus furiosus dsm 3638} SCOP: b.43.3.5 PDB: 2rfk_C
Probab=67.73 E-value=5.7 Score=18.49 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.8
Q ss_pred HCCEEEEECCCEEEEEEEEEECCCCEEEEEECCC
Q ss_conf 0113675258431199886657995089997499
Q gi|254780713|r 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM 137 (190)
Q Consensus 104 iG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~ 137 (190)
+|..|++++...+|+|.+++-.-.++++.|+...
T Consensus 33 ~~s~v~~~~~~~iG~V~eifGpv~~Py~~vk~~~ 66 (82)
T 2ey4_C 33 LNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV 66 (82)
T ss_dssp TTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS
T ss_pred CCCEEECCCCCEEEEEEEEECCCCCCEEEEEECC
T ss_conf 9999794689597899998888898589999788
No 13
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=25.82 E-value=29 Score=14.54 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHCCEEEEECCCEEEEEEEEEE
Q ss_conf 64100214524011367525843119988665
Q gi|254780713|r 93 LEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124 (190)
Q Consensus 93 l~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~ 124 (190)
..+++.+|.++-...++|.+|+.+|.|..+.+
T Consensus 75 ~~dg~~~w~~~~~~pi~d~~G~i~~~v~~~~D 106 (110)
T 1byw_A 75 RKDGSCFLCLVDVVPVKNEDGAVIMFILNFEV 106 (110)
T ss_dssp CTTSCEEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 48998999998989999899899999999997
No 14
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.43 E-value=32 Score=14.31 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCEEEEECCCEEEEEEEEEECCCCEEEEEECCC
Q ss_conf 113675258431199886657995089997499
Q gi|254780713|r 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM 137 (190)
Q Consensus 105 G~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~~ 137 (190)
|--+++++...+|+|.+++-.-.++.+.|+.++
T Consensus 53 ~Svl~~~~~~~iG~v~evfGpv~~P~y~v~~~s 85 (103)
T 2eqn_A 53 ETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNS 85 (103)
T ss_dssp TCEEECTTSBEEEEEEEEESCSSSCEEEECCSS
T ss_pred CCEEEECCCCEEEEEEEEECCCCCCEEEEEECC
T ss_conf 899995899687899895478888789998487
No 15
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=22.31 E-value=37 Score=13.96 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHCCEEEEECCCEEEEEEEEEE
Q ss_conf 4100214524011367525843119988665
Q gi|254780713|r 94 EEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124 (190)
Q Consensus 94 ~~~e~Y~~dLiG~~V~d~~~~~iG~V~~v~~ 124 (190)
.+|+.+|.++-...|+|.+|+..|.|.-+.+
T Consensus 76 kdG~~~~~~~~~~pv~d~~G~~~~~i~~~~D 106 (109)
T 1n9l_A 76 KDGTPFWNLLTVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 9998999999999999999899999999998
Done!