HHSEARCH alignment of GI: 254780713 and SCOP domain: d2f1la1

Alignment

Probab=99.84  E-value=3.5e-21  Score=136.49  Aligned_cols=71  Identities=21%  Similarity=0.374  Sum_probs=66.6

Q ss_pred             CCHHHHHCCEEEEECCCEEEEEEEEEECCCCEEEEEECC----CCCEEEEECHHHHCCEEECCCCEEEEECCCCC
Q ss_conf             214524011367525843119988665799508999749----98289987503100105633979999528100
Q gi|254780713|r   98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG  168 (190)
Q Consensus        98 ~Y~~dLiG~~V~d~~~~~iG~V~~v~~~~a~dil~V~~~----~~ke~lIP~v~~~I~~ID~~~k~I~v~~p~Gl  168 (190)
                      |||+|||||+|+|.+|+.+|+|.+|+++||||+|+|++.    +++++||||+++||.+||+++|+|+|++|+++
T Consensus         1 fY~~dLiG~~V~d~~g~~lG~V~~v~~~ga~dll~I~~~~~~~~~keiLIP~v~~~V~~ID~~~k~I~Vdw~~d~   75 (75)
T d2f1la1           1 YYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF   75 (75)
T ss_dssp             CCHHHHTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCTTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred             CCHHHCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCC
T ss_conf             987994897999489999899989810699329999827888898099998572202489678999999579998

SCOP domain information

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: RimM C-terminal domain-like
domain: 16S rRNA processing protein RimM, C-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]