BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein
[Candidatus Liberibacter asiaticus str. psy62]
(190 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040390|gb|ACT57186.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 190
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF
Sbjct: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC
Sbjct: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD
Sbjct: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
Query: 181 CPLDSAGKKS 190
CPLDSAGKKS
Sbjct: 181 CPLDSAGKKS 190
>gi|315121878|ref|YP_004062367.1| 16S rRNA-processing protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495280|gb|ADR51879.1| 16S rRNA-processing protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 190
Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 158/187 (84%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
MVK +KLVL+ATIGTTHGL GEVY++SYA+NP+DL+RY+LYS+D +E +IL +Y+ NKR
Sbjct: 1 MVKSEKLVLIATIGTTHGLKGEVYVNSYASNPMDLSRYILYSDDAKEFKILDIYQNNKRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IATF GI +IHSA +LR LKLYA+RQDFKDEELEEDEFFN DLEE+ETFD QGKYWG++C
Sbjct: 61 IATFDGIYDIHSAEKLRHLKLYARRQDFKDEELEEDEFFNADLEELETFDLQGKYWGKIC 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
G+Y+FGAG++LE K++ EK FLIPFTK VL VNL+ENKILID ++AGL+ T K+ ++
Sbjct: 121 GIYDFGAGAVLEFKDSKEKKFLIPFTKSTVLSVNLKENKILIDSVSAGLDCMTKKDKNHE 180
Query: 181 CPLDSAG 187
C S G
Sbjct: 181 CQSSSPG 187
>gi|222087527|ref|YP_002546064.1| 16S rRNA processing protein RimM [Agrobacterium radiobacter K84]
gi|254797739|sp|B9JCM0|RIMM_AGRRK RecName: Full=Ribosome maturation factor rimM
gi|221724975|gb|ACM28131.1| 16S rRNA processing protein RimM [Agrobacterium radiobacter K84]
Length = 190
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV ++ ++P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGAAQGLRGEVRARAFTSDPTALGDYGHLHSMDGRIFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G++N +A L L+LY +R + D+ELE+DEFF TDLE +E D +G +G V
Sbjct: 61 VIVRFRGVNNRDAAEALNGLELYIERDNLPDDELEDDEFFYTDLEGLEAVDDKGTAYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GVY+FGAG +LE+K ++ LIPF++ AVLE++L+ KILIDP+AAGL ++
Sbjct: 121 SGVYDFGAGDLLELKGPGKRPVLIPFSEAAVLEIDLEGGKILIDPMAAGLIDS 173
>gi|109893039|sp|Q2K381|RIMM_RHIEC RecName: Full=Ribosome maturation factor rimM
Length = 188
Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y +L+S D R IL++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGLLHSTDGRSFEILEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEALDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 170
>gi|86359540|ref|YP_471432.1| 16S rRNA-processing protein [Rhizobium etli CFN 42]
gi|86283642|gb|ABC92705.1| 16S rRNA processing protein [Rhizobium etli CFN 42]
Length = 217
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y +L+S D R IL++
Sbjct: 30 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGLLHSTDGRSFEILEIREMKNV 89
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 90 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEALDDKGVSYGTV 149
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 150 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 199
>gi|190893807|ref|YP_001980349.1| 16S rRNA processing protein [Rhizobium etli CIAT 652]
gi|209573647|sp|B3PR17|RIMM_RHIE6 RecName: Full=Ribosome maturation factor rimM
gi|190699086|gb|ACE93171.1| 16S rRNA processing protein [Rhizobium etli CIAT 652]
Length = 193
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R IL++
Sbjct: 5 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDGRSFEILEIREMKNV 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D QG +G V
Sbjct: 65 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDQGVSYGTV 124
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 125 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 174
>gi|209551324|ref|YP_002283241.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238058953|sp|B5ZTH9|RIMM_RHILW RecName: Full=Ribosome maturation factor rimM
gi|209537080|gb|ACI57015.1| 16S rRNA processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 189
Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VIVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 170
>gi|163757327|ref|ZP_02164416.1| 16S rRNA-processing protein [Hoeflea phototrophica DFL-43]
gi|162284829|gb|EDQ35111.1| 16S rRNA-processing protein [Hoeflea phototrophica DFL-43]
Length = 202
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ +L+ IG G+ GEV + + +P+ + Y LYS D R IL
Sbjct: 8 MSKLENPILIGIIGAAQGIRGEVRVKPFTEDPMAIAEYGALYSEDGRRFEILDHRLAKTV 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L+ L LY R DE+LEE E+F+ DLE +E +D +G++WG+V
Sbjct: 68 VVVRFRGINDRNAAEALKGLNLYIDRSSLDDEDLEEGEYFHADLEGLEAWDAEGQFWGEV 127
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GV +FG G +LE++ K +IPFT AV +V+L+ +IL+DPIAAGL +T
Sbjct: 128 SGVLDFGGGDLLELREDGRKPVVIPFTLAAVPKVDLEAGRILVDPIAAGLIDT 180
>gi|218513354|ref|ZP_03510194.1| 16S rRNA-processing protein [Rhizobium etli 8C-3]
Length = 206
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 107/170 (62%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R IL++
Sbjct: 18 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDGRSFEILEIREMKNV 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D G +G V
Sbjct: 78 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDHGVSYGTV 137
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 138 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 187
>gi|222150103|ref|YP_002551060.1| 16S rRNA-processing protein RimM [Agrobacterium vitis S4]
gi|221737085|gb|ACM38048.1| 16S rRNA processing protein RimM [Agrobacterium vitis S4]
Length = 221
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 109/178 (61%), Gaps = 1/178 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMA IG GL GEV + S+ +P+ L Y L++ D R +L +
Sbjct: 32 MTKLENPVLMAVIGAAQGLRGEVRVKSFTADPMALGDYGKLHAGDGRVFEVLDIREAKTV 91
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+L+ +R DEEL++DEF+ DLE + D +G +G V
Sbjct: 92 VVVRFRGVNDRNAAEALNGLELFIERSALPDEELDDDEFYYADLEGLAVVDAEGNSYGTV 151
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V++FGAG +LE+K ++ L+PF++ AVL+++L+E K+LIDP AAGL + + P
Sbjct: 152 TAVFDFGAGDLLEVKGPGKRPVLVPFSEAAVLQIDLEEGKLLIDPEAAGLKDDGSEEP 209
>gi|241206760|ref|YP_002977856.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860650|gb|ACS58317.1| 16S rRNA processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 189
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 170
>gi|116254277|ref|YP_770115.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
viciae 3841]
gi|115258925|emb|CAK10034.1| putative 16S rRNA processing protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 193
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 5 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEEL+EDEF+ DLE +E D +G +G V
Sbjct: 65 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELDEDEFYYADLEGLEARDDKGVSYGTV 124
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 125 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 174
>gi|172046212|sp|Q1MAK4|RIMM_RHIL3 RecName: Full=Ribosome maturation factor rimM
Length = 189
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEEL+EDEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELDEDEFYYADLEGLEARDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 170
>gi|209573734|sp|A6UE44|RIMM_SINMW RecName: Full=Ribosome maturation factor rimM
Length = 187
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ +A L L+L+ +R + D++L+EDEFF DLE ME DR GK +G V
Sbjct: 61 VVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 121 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 180
Query: 180 DCP 182
P
Sbjct: 181 PFP 183
>gi|227823735|ref|YP_002827708.1| 16S rRNA-processing protein RimM [Sinorhizobium fredii NGR234]
gi|254797759|sp|C3MAG2|RIMM_RHISN RecName: Full=Ribosome maturation factor rimM
gi|227342737|gb|ACP26955.1| 16S rRNA processing protein RimM [Sinorhizobium fredii NGR234]
Length = 187
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEVRETKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GI++ +A L L+L+ +R + D++L+EDEFF DLE +E D GK +G V
Sbjct: 61 VIVRFRGINDRSAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGLEAVDGTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GV++FGAG +LE+K + LIPFT+++VLE++L+ K+L+DP+AAGL
Sbjct: 121 TGVFDFGAGDLLELKGPGRRPVLIPFTEWSVLEIDLEAGKLLVDPVAAGL 170
>gi|150398292|ref|YP_001328759.1| 16S rRNA-processing protein RimM [Sinorhizobium medicae WSM419]
gi|150029807|gb|ABR61924.1| 16S rRNA processing protein RimM [Sinorhizobium medicae WSM419]
Length = 206
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 20 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNV 79
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ +A L L+L+ +R + D++L+EDEFF DLE ME DR GK +G V
Sbjct: 80 VVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSV 139
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 140 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 199
Query: 180 DCP 182
P
Sbjct: 200 PFP 202
>gi|15966996|ref|NP_387349.1| 16S rRNA-processing protein [Sinorhizobium meliloti 1021]
gi|307302464|ref|ZP_07582221.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti BL225C]
gi|307316206|ref|ZP_07595650.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti AK83]
gi|21362866|sp|Q92L42|RIMM_RHIME RecName: Full=Ribosome maturation factor rimM
gi|15076269|emb|CAC47822.1| Probable 16S rRNA processing protein [Sinorhizobium meliloti 1021]
gi|306898046|gb|EFN28788.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti AK83]
gi|306903134|gb|EFN33724.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti BL225C]
Length = 187
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPAALGDYGNLHSEDGRVFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ +A L L+L+ +R + D++L+EDEFF DLE +E DR GK +G V
Sbjct: 61 VVVRFRGINDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGLEAVDRTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 121 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 180
Query: 180 DCP 182
P
Sbjct: 181 PFP 183
>gi|325294071|ref|YP_004279935.1| Ribosome maturation factor rimM [Agrobacterium sp. H13-3]
gi|325061924|gb|ADY65615.1| Ribosome maturation factor rimM [Agrobacterium sp. H13-3]
Length = 188
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ +LMA IG GL GEV + +Y + P+ L Y L S D R IL++
Sbjct: 1 MAKLENPILMAKIGGAQGLRGEVRVSTYTDEPMALGDYGNLVSADGRVFEILEVREGKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V
Sbjct: 61 VVVRFRGINDRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
VY+FGAG +LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL
Sbjct: 121 SAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEARRILIDPMAAGL 170
>gi|22001903|sp|Q8UBZ8|RIMM_AGRT5 RecName: Full=Ribosome maturation factor rimM
Length = 188
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ +LMA IG GL GEV + +Y ++P+ L Y L + D R IL++
Sbjct: 1 MAKLENPILMAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V
Sbjct: 61 VVVRFRGINDRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
VY+FGAG +LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL
Sbjct: 121 SAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGL 170
>gi|159185334|ref|NP_355635.2| 16S rRNA-processing protein [Agrobacterium tumefaciens str. C58]
gi|159140589|gb|AAK88420.2| 16S rRNA processing protein [Agrobacterium tumefaciens str. C58]
Length = 179
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIATFSGID 68
MA IG GL GEV + +Y ++P+ L Y L + D R IL++ + F GI+
Sbjct: 1 MAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGIN 60
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V VY+FGAG
Sbjct: 61 DRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAG 120
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL
Sbjct: 121 DLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGL 161
>gi|306843366|ref|ZP_07475967.1| 16S rRNA processing protein RimM [Brucella sp. BO1]
gi|306276057|gb|EFM57757.1| 16S rRNA processing protein RimM [Brucella sp. BO1]
Length = 189
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNTAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDEDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPYAAGLIADEHDNPPH 180
Query: 180 DC 181
+
Sbjct: 181 ES 182
>gi|254717977|ref|ZP_05179788.1| 16S rRNA-processing protein RimM [Brucella sp. 83/13]
gi|265982920|ref|ZP_06095655.1| ribosome maturation factor rimM [Brucella sp. 83/13]
gi|306838930|ref|ZP_07471757.1| 16S rRNA processing protein RimM [Brucella sp. NF 2653]
gi|306842935|ref|ZP_07475569.1| 16S rRNA processing protein RimM [Brucella sp. BO2]
gi|264661512|gb|EEZ31773.1| ribosome maturation factor rimM [Brucella sp. 83/13]
gi|306286863|gb|EFM58388.1| 16S rRNA processing protein RimM [Brucella sp. BO2]
gi|306406000|gb|EFM62252.1| 16S rRNA processing protein RimM [Brucella sp. NF 2653]
Length = 189
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 6/191 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL ++
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIAD-----EH 175
Query: 180 DCPLDSAGKKS 190
D P +GKK
Sbjct: 176 DTPPHESGKKP 186
>gi|256158416|ref|ZP_05456314.1| 16S rRNA-processing protein RimM [Brucella ceti M490/95/1]
gi|256253836|ref|ZP_05459372.1| 16S rRNA-processing protein RimM [Brucella ceti B1/94]
gi|261220971|ref|ZP_05935252.1| ribosome maturation factor rimM [Brucella ceti B1/94]
gi|265996930|ref|ZP_06109487.1| ribosome maturation factor rimM [Brucella ceti M490/95/1]
gi|260919555|gb|EEX86208.1| ribosome maturation factor rimM [Brucella ceti B1/94]
gi|262551398|gb|EEZ07388.1| ribosome maturation factor rimM [Brucella ceti M490/95/1]
Length = 189
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPSH 180
Query: 180 DC 181
+
Sbjct: 181 ES 182
>gi|17986432|ref|NP_539066.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 1 str.
16M]
gi|23502765|ref|NP_698892.1| 16S rRNA-processing protein RimM [Brucella suis 1330]
gi|62290769|ref|YP_222562.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 1 str.
9-941]
gi|82700681|ref|YP_415255.1| 16S rRNA-processing protein RimM [Brucella melitensis biovar
Abortus 2308]
gi|148559613|ref|YP_001259739.1| 16S rRNA-processing protein RimM [Brucella ovis ATCC 25840]
gi|161619833|ref|YP_001593720.1| 16S rRNA-processing protein [Brucella canis ATCC 23365]
gi|163843938|ref|YP_001628342.1| 16S rRNA-processing protein [Brucella suis ATCC 23445]
gi|189024984|ref|YP_001935752.1| 16S rRNA-processing protein RimM [Brucella abortus S19]
gi|225628114|ref|ZP_03786149.1| 16S rRNA processing protein RimM [Brucella ceti str. Cudo]
gi|225853352|ref|YP_002733585.1| 16S rRNA-processing protein RimM [Brucella melitensis ATCC 23457]
gi|237816276|ref|ZP_04595269.1| 16S rRNA processing protein RimM [Brucella abortus str. 2308 A]
gi|254690059|ref|ZP_05153313.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 6 str. 870]
gi|254694547|ref|ZP_05156375.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 3 str.
Tulya]
gi|254696172|ref|ZP_05158000.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 2 str.
86/8/59]
gi|254700559|ref|ZP_05162387.1| 16S rRNA-processing protein RimM [Brucella suis bv. 5 str. 513]
gi|254704929|ref|ZP_05166757.1| 16S rRNA-processing protein RimM [Brucella suis bv. 3 str. 686]
gi|254707557|ref|ZP_05169385.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis
M163/99/10]
gi|254708906|ref|ZP_05170717.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis B2/94]
gi|254713667|ref|ZP_05175478.1| 16S rRNA-processing protein RimM [Brucella ceti M644/93/1]
gi|254715979|ref|ZP_05177790.1| 16S rRNA-processing protein RimM [Brucella ceti M13/05/1]
gi|254731090|ref|ZP_05189668.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 4 str. 292]
gi|256030432|ref|ZP_05444046.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis M292/94/1]
gi|256045522|ref|ZP_05448405.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059891|ref|ZP_05450078.1| 16S rRNA-processing protein RimM [Brucella neotomae 5K33]
gi|256112249|ref|ZP_05453170.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 3 str.
Ether]
gi|256258312|ref|ZP_05463848.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 9 str. C68]
gi|256263162|ref|ZP_05465694.1| ribosome maturation factor rimM [Brucella melitensis bv. 2 str.
63/9]
gi|256370317|ref|YP_003107828.1| 16S rRNA-processing protein [Brucella microti CCM 4915]
gi|260169342|ref|ZP_05756153.1| 16S rRNA-processing protein RimM [Brucella sp. F5/99]
gi|260546036|ref|ZP_05821776.1| ribosome maturation factor rimM [Brucella abortus NCTC 8038]
gi|260562832|ref|ZP_05833318.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
16M]
gi|260567596|ref|ZP_05838066.1| ribosome maturation factor rimM [Brucella suis bv. 4 str. 40]
gi|260755594|ref|ZP_05867942.1| ribosome maturation factor rimM [Brucella abortus bv. 6 str. 870]
gi|260758820|ref|ZP_05871168.1| ribosome maturation factor rimM [Brucella abortus bv. 4 str. 292]
gi|260760544|ref|ZP_05872887.1| ribosome maturation factor rimM [Brucella abortus bv. 2 str.
86/8/59]
gi|260884620|ref|ZP_05896234.1| ribosome maturation factor rimM [Brucella abortus bv. 9 str. C68]
gi|261214867|ref|ZP_05929148.1| ribosome maturation factor rimM [Brucella abortus bv. 3 str. Tulya]
gi|261217744|ref|ZP_05932025.1| ribosome maturation factor rimM [Brucella ceti M13/05/1]
gi|261315041|ref|ZP_05954238.1| ribosome maturation factor rimM [Brucella pinnipedialis M163/99/10]
gi|261316402|ref|ZP_05955599.1| ribosome maturation factor rimM [Brucella pinnipedialis B2/94]
gi|261321408|ref|ZP_05960605.1| ribosome maturation factor rimM [Brucella ceti M644/93/1]
gi|261323862|ref|ZP_05963059.1| ribosome maturation factor rimM [Brucella neotomae 5K33]
gi|261751063|ref|ZP_05994772.1| ribosome maturation factor rimM [Brucella suis bv. 5 str. 513]
gi|261755625|ref|ZP_05999334.1| ribosome maturation factor rimM [Brucella suis bv. 3 str. 686]
gi|261758858|ref|ZP_06002567.1| ribosome maturation factor rimM [Brucella sp. F5/99]
gi|265987474|ref|ZP_06100031.1| ribosome maturation factor rimM [Brucella pinnipedialis M292/94/1]
gi|265991946|ref|ZP_06104503.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993678|ref|ZP_06106235.1| ribosome maturation factor rimM [Brucella melitensis bv. 3 str.
Ether]
gi|294851156|ref|ZP_06791829.1| 16S rRNA processing protein RimM [Brucella sp. NVSL 07-0026]
gi|297247157|ref|ZP_06930875.1| 16S rRNA processing protein RimM [Brucella abortus bv. 5 str.
B3196]
gi|54039057|sp|P66652|RIMM_BRUSU RecName: Full=Ribosome maturation factor rimM
gi|54041927|sp|P66651|RIMM_BRUME RecName: Full=Ribosome maturation factor rimM
gi|75496198|sp|Q57AY3|RIMM_BRUAB RecName: Full=Ribosome maturation factor rimM
gi|109893002|sp|Q2YLT0|RIMM_BRUA2 RecName: Full=Ribosome maturation factor rimM
gi|166226428|sp|A5VSP2|RIMM_BRUO2 RecName: Full=Ribosome maturation factor rimM
gi|189040127|sp|A9M8Q1|RIMM_BRUC2 RecName: Full=Ribosome maturation factor rimM
gi|189040128|sp|B0CIR9|RIMM_BRUSI RecName: Full=Ribosome maturation factor rimM
gi|238689405|sp|B2S869|RIMM_BRUA1 RecName: Full=Ribosome maturation factor rimM
gi|254797745|sp|C0RFF9|RIMM_BRUMB RecName: Full=Ribosome maturation factor rimM
gi|17982028|gb|AAL51330.1| 16S ribosomal RNA processing protein rimm [Brucella melitensis bv.
1 str. 16M]
gi|23348784|gb|AAN30807.1| 16S rRNA processing protein RimM [Brucella suis 1330]
gi|62196901|gb|AAX75201.1| RimM, 16S rRNA processing protein [Brucella abortus bv. 1 str.
9-941]
gi|82616782|emb|CAJ11871.1| ATP/GTP-binding site motif A (P-loop):RimM protein [Brucella
melitensis biovar Abortus 2308]
gi|148370870|gb|ABQ60849.1| 16S rRNA processing protein RimM [Brucella ovis ATCC 25840]
gi|161336644|gb|ABX62949.1| 16S rRNA processing protein RimM [Brucella canis ATCC 23365]
gi|163674661|gb|ABY38772.1| 16S rRNA processing protein RimM [Brucella suis ATCC 23445]
gi|189020556|gb|ACD73278.1| RimM protein [Brucella abortus S19]
gi|225616939|gb|EEH13986.1| 16S rRNA processing protein RimM [Brucella ceti str. Cudo]
gi|225641717|gb|ACO01631.1| 16S rRNA processing protein RimM [Brucella melitensis ATCC 23457]
gi|237788343|gb|EEP62558.1| 16S rRNA processing protein RimM [Brucella abortus str. 2308 A]
gi|256000480|gb|ACU48879.1| 16S rRNA-processing protein [Brucella microti CCM 4915]
gi|260096143|gb|EEW80019.1| ribosome maturation factor rimM [Brucella abortus NCTC 8038]
gi|260152848|gb|EEW87940.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
16M]
gi|260157114|gb|EEW92194.1| ribosome maturation factor rimM [Brucella suis bv. 4 str. 40]
gi|260669138|gb|EEX56078.1| ribosome maturation factor rimM [Brucella abortus bv. 4 str. 292]
gi|260670976|gb|EEX57797.1| ribosome maturation factor rimM [Brucella abortus bv. 2 str.
86/8/59]
gi|260675702|gb|EEX62523.1| ribosome maturation factor rimM [Brucella abortus bv. 6 str. 870]
gi|260874148|gb|EEX81217.1| ribosome maturation factor rimM [Brucella abortus bv. 9 str. C68]
gi|260916474|gb|EEX83335.1| ribosome maturation factor rimM [Brucella abortus bv. 3 str. Tulya]
gi|260922833|gb|EEX89401.1| ribosome maturation factor rimM [Brucella ceti M13/05/1]
gi|261294098|gb|EEX97594.1| ribosome maturation factor rimM [Brucella ceti M644/93/1]
gi|261295625|gb|EEX99121.1| ribosome maturation factor rimM [Brucella pinnipedialis B2/94]
gi|261299842|gb|EEY03339.1| ribosome maturation factor rimM [Brucella neotomae 5K33]
gi|261304067|gb|EEY07564.1| ribosome maturation factor rimM [Brucella pinnipedialis M163/99/10]
gi|261738842|gb|EEY26838.1| ribosome maturation factor rimM [Brucella sp. F5/99]
gi|261740816|gb|EEY28742.1| ribosome maturation factor rimM [Brucella suis bv. 5 str. 513]
gi|261745378|gb|EEY33304.1| ribosome maturation factor rimM [Brucella suis bv. 3 str. 686]
gi|262764659|gb|EEZ10580.1| ribosome maturation factor rimM [Brucella melitensis bv. 3 str.
Ether]
gi|263003012|gb|EEZ15305.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093067|gb|EEZ17217.1| ribosome maturation factor rimM [Brucella melitensis bv. 2 str.
63/9]
gi|264659671|gb|EEZ29932.1| ribosome maturation factor rimM [Brucella pinnipedialis M292/94/1]
gi|294819745|gb|EFG36744.1| 16S rRNA processing protein RimM [Brucella sp. NVSL 07-0026]
gi|297174326|gb|EFH33673.1| 16S rRNA processing protein RimM [Brucella abortus bv. 5 str.
B3196]
gi|326409917|gb|ADZ66982.1| RimM protein [Brucella melitensis M28]
gi|326539630|gb|ADZ87845.1| 16S rRNA processing protein RimM [Brucella melitensis M5-90]
Length = 189
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPPH 180
Query: 180 DC 181
+
Sbjct: 181 ES 182
>gi|240851323|ref|YP_002972726.1| 16S rRNA processing protein RimM [Bartonella grahamii as4aup]
gi|240268446|gb|ACS52034.1| 16S rRNA processing protein RimM [Bartonella grahamii as4aup]
Length = 185
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V++ + P Y LY + R I+ + + + I
Sbjct: 7 KLKNKVYLAIIGMPHGIKGDVFVKILSAEPQRFKSYSTLYDDMGRSYEIVTLRIQKNKAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G++N + A L+ ++LY R D+ L+EDEF+ DL + D GK G+VCG
Sbjct: 67 VRFKGVENRNVAESLKGIRLYVMRDQLIDD-LDEDEFYQVDLIGLRVQDCGGKVVGEVCG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+NFGAG +LEI+ K LIPF+K AV E+ + +++DP+AAGL++
Sbjct: 126 FFNFGAGDLLEIRLNTSKRVLIPFSKVAVPEICMDSGFLVVDPMAAGLSD 175
>gi|319780737|ref|YP_004140213.1| 16S rRNA processing protein RimM [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166625|gb|ADV10163.1| 16S rRNA processing protein RimM [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 199
Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 2/170 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL V MA IG HG+ GE+ + ++ P+ L Y LY+ D R +I+ + N
Sbjct: 1 MSKLQNPVQMAVIGAAHGIKGELRVKTFTGEPLALADYGPLYARDGRAFQIVDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGIADRNAAEALAGTELFVDRSMLPDDG-EEDEFYHADLVGLEVRDDTGAVLGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V+NFG G IL++ K LIPFT+ AV +V++ E + +DP AAGL
Sbjct: 120 VAVHNFGGGDILDVTLGGRKGVLIPFTQAAVPQVSIAEGFVRVDPAAAGL 169
>gi|49476238|ref|YP_034279.1| 16s rRNA processing protein rimM [Bartonella henselae str.
Houston-1]
gi|59798261|sp|Q6G1R8|RIMM_BARHE RecName: Full=Ribosome maturation factor rimM
gi|49239046|emb|CAF28346.1| 16s rRNA processing protein rimM [Bartonella henselae str.
Houston-1]
Length = 180
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V + ++ P L Y LY + I+ + + K I
Sbjct: 7 KLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRMQKKNAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+++ +A LR + LY R D+ L EDEF+ DL + D G+ G+V G
Sbjct: 67 VHFKGVEDRSAAEALRGIHLYVARDQLVDD-LTEDEFYQVDLIGLRVQDCTGRILGEVSG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
++NFGAG +LE++ KT LIPF+K AVLEV + +++DP+AAGL++
Sbjct: 126 LFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIASGFLVVDPVAAGLSD 175
>gi|260464186|ref|ZP_05812379.1| 16S rRNA processing protein RimM [Mesorhizobium opportunistum
WSM2075]
gi|259029989|gb|EEW31272.1| 16S rRNA processing protein RimM [Mesorhizobium opportunistum
WSM2075]
Length = 199
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K V MA IG HG+ GE+ + ++ P+ L Y LYS D R +I+ + N
Sbjct: 1 MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYSRDGRAFQIIDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGVTDRNTAEALAGTELFVDRSMLPDDG-EEDEFYHADLIGLEVRDDTGAALGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V+NFG G IL++ K LIPFT+ AV +V++ E + IDP AAGL P
Sbjct: 120 VAVHNFGGGDILDVTLGGRKGVLIPFTQAAVPQVSIAEGFVRIDPAAAGLVEDEDGEPPR 179
Query: 180 DCPLDSAGKK 189
+ D G+
Sbjct: 180 EEDFDPKGRP 189
>gi|121602541|ref|YP_988423.1| 16S rRNA processing protein RimM [Bartonella bacilliformis KC583]
gi|166226425|sp|A1UR20|RIMM_BARBK RecName: Full=Ribosome maturation factor rimM
gi|120614718|gb|ABM45319.1| 16S rRNA processing protein RimM [Bartonella bacilliformis KC583]
Length = 191
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
+L+K VL+A I HG+ G+V ++ P L Y VLY + R I+ M I
Sbjct: 7 ELNKAVLLAVIRAAHGIRGDVVVNLLGAEPQRLKTYGVLYDDKGRLYEIVSMRVHKNNVI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+D+ +A L+ ++LY +R F D+ L+ DEF+ DL + +D + G+V G
Sbjct: 67 VRFKGVDDRSTAEALKGVQLYIERDQFADD-LDTDEFYQIDLIGLRVYDNTNQLLGEVSG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+NFGAG +LE++ KT LIPF+K AV E+ + +++DP+AAGL
Sbjct: 126 FFNFGAGDLLEVRLISHKTELIPFSKAAVPEICVASGFLVVDPVAAGL 173
>gi|13473626|ref|NP_105194.1| 16S rRNA-processing protein RimM [Mesorhizobium loti MAFF303099]
gi|21362871|sp|Q98EE0|RIMM_RHILO RecName: Full=Ribosome maturation factor rimM
gi|14024376|dbj|BAB50980.1| putative 16S rRNA processing protein [Mesorhizobium loti
MAFF303099]
Length = 199
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K V MA IG HG+ GE+ + ++ P+ L Y LY+ D R +I + N
Sbjct: 1 MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGISDRNAAEALAGTELFVDRSMLPDDG-EEDEFYHADLVGLEVRDDTGTALGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V+NFG G IL++ K LIPFT+ AV +V++ E + +DP+AAGL
Sbjct: 120 VAVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFVRVDPVAAGL 169
>gi|153008278|ref|YP_001369493.1| 16S rRNA-processing protein RimM [Ochrobactrum anthropi ATCC 49188]
gi|166226460|sp|A6WXG0|RIMM_OCHA4 RecName: Full=Ribosome maturation factor rimM
gi|151560166|gb|ABS13664.1| 16S rRNA processing protein RimM [Ochrobactrum anthropi ATCC 49188]
Length = 189
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + +L+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIAEYGLLYDEQGKSYEVLEARPAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L +L+ R D+EL+EDEFF TDL + D +GK +G V
Sbjct: 61 VVVRFKGINDRNAAEALNGTELFIDRSQLPDDELDEDEFFQTDLIGLLAVDAEGKTYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+++FG G ++E+ ++ LIPFT+ AV E++L + +L++P AAGL
Sbjct: 121 SALFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDLDKGTLLVEPYAAGL 170
>gi|110635771|ref|YP_675979.1| 16S rRNA-processing protein [Mesorhizobium sp. BNC1]
gi|122965539|sp|Q11CR1|RIMM_MESSB RecName: Full=Ribosome maturation factor rimM
gi|110286755|gb|ABG64814.1| 16S rRNA processing protein RimM [Chelativorans sp. BNC1]
Length = 212
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
++ V +A IG HG+ GEV + ++ +P+ L Y L+ D R L++ + + I
Sbjct: 14 IENPVQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMVDGRVLQVAAIRPAKEVVIV 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+D ++A L L+ R E+LEE+EF+ DL M D +G+ G+V V
Sbjct: 74 RFKGVDGRNAAEALNGEALFVDRSALP-EKLEEEEFYYADLIGMAVLDEKGENLGRVVAV 132
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
+NFGAG +LE + T +IPFT+ AV +++L N I ID I AGL+N +
Sbjct: 133 HNFGAGDLLEFRENSGPTVIIPFTRDAVPDIDLSNNTIRIDSITAGLDNAELSG 186
>gi|163869251|ref|YP_001610507.1| 16S rRNA-processing protein RimM [Bartonella tribocorum CIP 105476]
gi|189040126|sp|A9IZB5|RIMM_BART1 RecName: Full=Ribosome maturation factor rimM
gi|161018954|emb|CAK02512.1| 16S rRNA processing protein [Bartonella tribocorum CIP 105476]
Length = 181
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 2/170 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V++ + +P Y LY + R I+ + + I
Sbjct: 7 KLKNKVYLAIIGMPHGIRGDVFVKILSADPQRFKSYGTLYDDMGRSYEIVTLRTQKNNAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G++N ++A L+ + LY R D+ L EDEF+ DL + + GK G+VCG
Sbjct: 67 VRFKGVENRNAAESLKGIHLYVMRDQLIDD-LREDEFYQVDLIGLRVQEYGGKILGEVCG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
NFGAG +LEI+ K LIPF+K AV E+ + +++DP+AAGL +
Sbjct: 126 FCNFGAGDLLEIRLNTGKRMLIPFSKVAVPEICMDSGFLIVDPMAAGLRD 175
>gi|319407794|emb|CBI81445.1| Ribosome maturation factor rimM [Bartonella sp. 1-1C]
Length = 171
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+NG+V + ++NP L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGINGDVVVKVLSSNPESLKSYSVFYDETERSYEVVTFRVQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L+EDEF+ DL + ++ ++ G+V G
Sbjct: 61 HFKGIEERSAAESLRGIKLYVERNQLADD-LDEDEFYQIDLIGLCVYNCAKQFLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+NFGAG ++EI+ K LI F+K AV E+ + +++DPIAAGL
Sbjct: 120 FNFGAGDLIEIQLVSGKKVLISFSKAAVPEICVASGFLIVDPIAAGL 166
>gi|49474760|ref|YP_032802.1| 16s rRNA processing protein rimM [Bartonella quintana str.
Toulouse]
gi|59798255|sp|Q6FYH3|RIMM_BARQU RecName: Full=Ribosome maturation factor rimM
gi|49240264|emb|CAF26734.1| 16s rRNA processing protein rimM [Bartonella quintana str.
Toulouse]
Length = 197
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 3/176 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A I HG+ G+V + ++ P L Y +LY + R I+ + + I
Sbjct: 7 KLKNKVYLAIIDLPHGVKGDVLVKVWSAEPQRLKTYGILYDDTGRPYEIVVLRVQKNNAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+++ +A L+ ++LY R D+ L EDEF+ DL + D G+ G+V G
Sbjct: 67 VHFKGVEDRSAAEALKGIRLYVTRDQLVDD-LAEDEFYQVDLIGLRVQDCAGQSLGKVSG 125
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
+NFGAG +LEI+ NT + T LIPF+K AV E+ + ++++P+AAGL N KN
Sbjct: 126 FFNFGAGDLLEIRLNTRKTTVLIPFSKAAVPEICVTSGFLVVEPVAAGLLNNKEKN 181
>gi|239833041|ref|ZP_04681370.1| 16S rRNA processing protein RimM [Ochrobactrum intermedium LMG
3301]
gi|239825308|gb|EEQ96876.1| 16S rRNA processing protein RimM [Ochrobactrum intermedium LMG
3301]
Length = 212
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 1/170 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + +L+
Sbjct: 25 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKSYEVLEARPAKTV 84
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L +L+ R D+EL+EDEF+ TDL + D +GK +G V
Sbjct: 85 VVVRFKGINDRNAAEALNGTELFIDRSQLPDDELDEDEFYQTDLIGLLAVDAEGKPYGVV 144
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+++FG G ++E+ ++ LIPFT+ AV E++ + +L++P AAGL
Sbjct: 145 SALFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGILLVEPHAAGL 194
>gi|319404834|emb|CBI78435.1| Ribosome maturation factor rimM [Bartonella rochalimae ATCC
BAA-1498]
Length = 171
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 2/167 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+ G+V + ++NP L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGIKGDVVVKVLSSNPESLKSYSVFYDETERSYEVVSFRMQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L+EDEF+ DL + ++ ++ G+V G
Sbjct: 61 HFKGIEERSAAESLRGIKLYVERNQLADD-LDEDEFYQIDLIGLCVYNCAKQFLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+NFGAG ++EI+ K LI F+K AV E+ + +++DPIAAGL
Sbjct: 120 FNFGAGDLIEIQLVSGKKVLISFSKAAVPEICVASGFLIVDPIAAGL 166
>gi|319406318|emb|CBI79955.1| Ribosome maturation factor rimM [Bartonella sp. AR 15-3]
Length = 169
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+ G+V+I + + P L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGIKGDVFIKALSTKPHSLKGYSVFYDETGRSYEVVTFRVQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L EDEF+ DL + ++ + G+V G
Sbjct: 61 HFKGIEERSAAEALRGIKLYVERSQLADD-LVEDEFYQIDLIGLCVYNCAKQLLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+NFGAG ++EI+ K LI F+K V ++ + +++DPIAAGL++
Sbjct: 120 FNFGAGDLMEIQLVSGKKVLISFSKAVVPKICVSSGFLIVDPIAAGLSH 168
>gi|319899440|ref|YP_004159537.1| 16S rRNA-processing protein rimM [Bartonella clarridgeiae 73]
gi|319403408|emb|CBI76976.1| putative 16S rRNA-processing protein rimM [Bartonella clarridgeiae
73]
Length = 171
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 2/169 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A I HG+ G+V++ + + P L Y VLY R I+ + I
Sbjct: 1 MKKKVYLAIITAAHGIKGDVFVKTLSAEPQRLKSYSVLYDETGRAYEIVTFRVQKNNAIV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ A L+ +KLY +R D+ L EDEF+ DL +D + G+V G
Sbjct: 61 HFKGIEERSVAESLKGIKLYVERSQLADD-LVEDEFYQIDLIGFCVYDCADQLLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+NFGAG +LE++ K LI F+K AV ++ + +++DPIAAGL++
Sbjct: 120 FNFGAGDLLEVRLASRKKVLISFSKAAVPKICVDSGFMIVDPIAAGLSH 168
>gi|319409397|emb|CBI83041.1| Ribosome maturation factor rimM [Bartonella schoenbuchensis R1]
Length = 179
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ +A IG HG+ G+V++ P L Y VLY R I + I F G
Sbjct: 12 ICLAIIGAAHGIRGDVWVKVLGGEPERLKAYGVLYDKGGRCYEIATFRVQKNDAIVRFKG 71
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
++ +A L+ + LY KR D+ L EDEF+ DL + +D K G+V G +NFG
Sbjct: 72 VEERSAAEALKGINLYIKRDQLLDD-LAEDEFYQIDLIGLCVYDDADKRLGEVSGFFNFG 130
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
AG +LEI K LIPF+K AV E+ + I+I+P+AAGL
Sbjct: 131 AGDLLEICLDGGKRELIPFSKAAVPEICVASGFIVINPVAAGL 173
>gi|118591421|ref|ZP_01548819.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
gi|118436093|gb|EAV42736.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
Length = 184
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIAT 63
D+ VLMA IG HG+ GEV + Y ++P+ Y +L + D + ++ R K + T
Sbjct: 6 DQKVLMAKIGAAHGIRGEVRVKPYGDDPLSFADYGILTTRDGKRSFEVERARVQKTVVIT 65
Query: 64 -FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI + + A EL + L+ R E EEDEF+ +DL ++ D+ G+ G++ V
Sbjct: 66 KFKGITDRNQAEELNGIDLFIDRDQLP--EPEEDEFYYSDLTGLDVLDQTGETLGKIIAV 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+FGAG +LE++ ++F IPFTK V E++L+ ++ +
Sbjct: 124 QDFGAGDLLEVRPKRGRSFYIPFTKDFVPEIDLENGRVCV 163
>gi|114705611|ref|ZP_01438514.1| 16S rRNA-processing protein [Fulvimarina pelagi HTCC2506]
gi|114538457|gb|EAU41578.1| 16S rRNA-processing protein [Fulvimarina pelagi HTCC2506]
Length = 185
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+KL+ VL+ +G HG+ GEV + SY P D+ Y ++N +K R K +
Sbjct: 1 MKLENPVLLGVVGGAHGVRGEVRVKSYTEEPTDIGAYGPLQDENGNRYTVKTARSQKTVV 60
Query: 62 AT-FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F ++ + A L +L+ +R + E E+DEF+ DLE + G G V
Sbjct: 61 VVKFDEVNERNHAERLNGRELFVERALLPEPE-EDDEFYLDDLEGLAVETLSGDPVGIVV 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V+NFGAG ILE+ T +IPF++ AV E++L+ + +DP+AAGL
Sbjct: 120 AVHNFGAGDILEVAPEEGTTLMIPFSEAAVPELDLETGLLKVDPLAAGL 168
>gi|85714455|ref|ZP_01045443.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
gi|85698902|gb|EAQ36771.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
Length = 202
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNKRFIA 62
++ V +A IG HGL GEV + ++ +P+ + RY L + D R+L + +A
Sbjct: 31 ERRVCVARIGAAHGLRGEVRLWTFTEDPMSVMRYGPLTTRDGARQLEVAHARAAKDHLVA 90
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF+G+ A L +LY R K + ++DEF++ DL + D G G V +
Sbjct: 91 TFTGVTTREEAERLNGTELYVARD--KLPKTDDDEFYHADLIGLAAVDAAGTTLGTVAAI 148
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+NFGAG I+EI T L+PFT V V++ +++I+
Sbjct: 149 HNFGAGDIIEIAPAQGPTLLLPFTDAVVPTVDIAGGRVVIE 189
>gi|75676965|ref|YP_319386.1| 16S rRNA processing protein RimM [Nitrobacter winogradskyi Nb-255]
gi|109893027|sp|Q3SNV7|RIMM_NITWN RecName: Full=Ribosome maturation factor rimM
gi|74421835|gb|ABA06034.1| 16S rRNA processing protein RimM [Nitrobacter winogradskyi Nb-255]
Length = 173
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
V +A IG HGL GEV + ++ +P+ + RY S + R+L + + IAT +
Sbjct: 5 VCVARIGAAHGLRGEVRLWTFTEDPMSVTRYGPLSTKDGARQLEVSHARAASDHLIATLT 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A L +LY R K E +E EF++ DL + FD G G V ++NF
Sbjct: 65 GVTTREEAERLNGTELYVARD--KLPETDEGEFYHADLIGLAAFDAAGTALGTVAAIHNF 122
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
GAG I+EI T ++PFT V V++ +++I+ A
Sbjct: 123 GAGDIIEIAPARGPTLMLPFTDAVVPIVDIAGGRVVIEAPA 163
>gi|328541717|ref|YP_004301826.1| ribosome maturation factor rimM [polymorphum gilvum SL003B-26A1]
gi|326411469|gb|ADZ68532.1| Ribosome maturation factor rimM [Polymorphum gilvum SL003B-26A1]
Length = 183
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+LMA IG HG+ GEV + + ++P+ Y + ++ +R ++ + I F
Sbjct: 8 ILMARIGAAHGVRGEVRVKPFGDDPLSFADYGPLETADGSRRFEVVGARVQKTVVITRFK 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID+ +A L L LY R+ E +DEF++ DL +E D +G V V +F
Sbjct: 68 GIDDRTAAEALNGLDLYVPRERLP--EPGDDEFYHADLIGLEAVDAAASRFGTVVAVQDF 125
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GAG +LEI+ ++F +PFT+ V V+L ++++D
Sbjct: 126 GAGDLLEIRPDRGRSFYVPFTQAFVPTVDLAAGRVVLD 163
>gi|298292732|ref|YP_003694671.1| 16S rRNA processing protein RimM [Starkeya novella DSM 506]
gi|296929243|gb|ADH90052.1| 16S rRNA processing protein RimM [Starkeya novella DSM 506]
Length = 180
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFIATFS 65
+L+A IG HG+ GEV + +A++P L RY +++ R ++ + F+A
Sbjct: 6 ILLARIGAPHGVRGEVRLFVFADDPDSLKRYKPLTDEAGKRVFKVKALRPAKDHFVARIE 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D +A L + L+ R D E +ED+F++ DL + +G +G++ V++F
Sbjct: 66 GVDTREAAEALTNQGLHVSR-DLLPEPEDEDDFYHADLIGLAAVTTEGAPFGKIVAVHDF 124
Query: 126 GAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG I+E+ KT ++PFTK V V+++ ++++DP
Sbjct: 125 GAGDIIEVAPEGGGKTLMLPFTKAVVPTVDIKGGRVVVDP 164
>gi|144898176|emb|CAM75040.1| 16S rRNA-processing protein RimM [Magnetospirillum gryphiswaldense
MSR-1]
Length = 180
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRFI-ATFS 65
V + I HG+ G V + S+ +P+D+ Y ++ + R LK+ + K F+ AT
Sbjct: 7 VCIGAIVGAHGVRGAVRVKSFTADPLDVVAYGPVEDEAGKRRFKLKVTGEAKGFVLATLD 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+++ +A L+ LY R E+EEDEF TDL + G+ G V GV NF
Sbjct: 67 GVNDRDAAEALKGTGLYVSRDRLP--EVEEDEFLYTDLVGLSALGLDGQVIGTVKGVANF 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG +L+I + + L+PFTK AV V++ + ++++DP
Sbjct: 125 GAGDLLDIIRPGQGSLLVPFTKVAVPVVDMVKRQVVVDP 163
>gi|254504892|ref|ZP_05117043.1| 16S rRNA processing protein RimM [Labrenzia alexandrii DFL-11]
gi|222440963|gb|EEE47642.1| 16S rRNA processing protein RimM [Labrenzia alexandrii DFL-11]
Length = 186
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIAT-FS 65
VLMA IG HG+ GEV + + ++P+ Y VL + D ++ + R K + T F
Sbjct: 9 VLMAKIGAAHGVRGEVRVKPFGDDPLSFTDYGVLTTKDGKQSFEVVSARVQKTVVVTKFK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ + + A EL +LY R E +EDEF+ +DL ++ D QG+ G++ V +F
Sbjct: 69 EVTDRNRAEELNGTELYIDRDQLP--ETDEDEFYYSDLNGLDVKDPQGELLGKIVAVQDF 126
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GAG + EI+ KTF IPFTK V +NL ++ D
Sbjct: 127 GAGDLFEIRPKRGKTFYIPFTKEFVPTINLDSGFVVAD 164
>gi|296446375|ref|ZP_06888320.1| 16S rRNA processing protein RimM [Methylosinus trichosporium OB3b]
gi|296256148|gb|EFH03230.1| 16S rRNA processing protein RimM [Methylosinus trichosporium OB3b]
Length = 186
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNK- 58
++ VL+ +G HG+ GE+ + S+ +P ++ Y + ++ R I + K
Sbjct: 12 ARMKNAVLLGRLGAAHGVRGEIRLQSFTADPAAISTYGPLFDASGQRRFVIASLRSLGKD 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+A G+ +A LR ++LY R+ + EDEF+ DLE + R G+ G
Sbjct: 72 MFVARLQGVSERSAAEALRGVELYVPREALPAPD--EDEFYLADLEGLRAETRAGETLGV 129
Query: 119 VCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDP 164
V V NFGAG ILEI +T L+PFTK V V++ ++L++P
Sbjct: 130 VIAVRNFGAGDILEIAPPQGGETLLLPFTKAVVPIVDVSGGRVLVEP 176
>gi|307943455|ref|ZP_07658799.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
gi|307773085|gb|EFO32302.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
Length = 179
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATF 64
LVLMA IG HG+ GEV + ++ ++P+ Y ++ + + + + + + F
Sbjct: 8 LVLMARIGAAHGIRGEVRVKAFGDDPLSFTDYGELITKSGDTTFEVERARIQKTVVVTKF 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GI++ ++A EL ++L+ R ELE+DEF++ DL M D +G G+V V +
Sbjct: 68 KGINDRNAAEELNGVELFVHRDQLP--ELEDDEFYHDDLVGMAVTDLEGTDLGKVVMVQD 125
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
FGAG +LE++ TF +PF+K V E+++ EN+++
Sbjct: 126 FGAGDLLEVRPKRGPTFYMPFSKAFVPEIDI-ENRVV 161
>gi|218508548|ref|ZP_03506426.1| 16S rRNA-processing protein [Rhizobium etli Brasil 5]
Length = 106
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 63/86 (73%)
Query: 84 KRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLI 143
+R + DEELE+DEF+ DLE +E D QG +G V GV++FGAG +LE+K ++ LI
Sbjct: 2 ERDNLPDEELEDDEFYYADLEGLEARDDQGVSYGTVTGVFDFGAGDLLELKGPGKRPVLI 61
Query: 144 PFTKFAVLEVNLQENKILIDPIAAGL 169
PF++ +VLE++L+ +LIDP+AAGL
Sbjct: 62 PFSEASVLEIDLEAGTLLIDPLAAGL 87
>gi|254472163|ref|ZP_05085563.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
gi|211958446|gb|EEA93646.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
Length = 185
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
K + +LMA IG HG+ GEV + + ++P+ Y L S D +K R K +
Sbjct: 4 KPEDRILMAQIGAAHGIRGEVRVKPFGDDPLSFGDYGKLESEDGSRKFKVKRARVQKNVV 63
Query: 62 AT-FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
T F G+++ + A L LKLY R+ + E +EDEF+++DL ++ D + G V
Sbjct: 64 VTKFEGVNDRNEAEALNGLKLYIPRERLPETE-DEDEFYHSDLIGLKALDENKEQIGTVL 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ +FGAG ++EI K+ L PFTK V +NL+E
Sbjct: 123 ALLDFGAGDLIEIAPKSGKSLLFPFTKAVVPVINLKEG 160
>gi|27375594|ref|NP_767123.1| 16S rRNA-processing protein RimM [Bradyrhizobium japonicum USDA
110]
gi|46397690|sp|Q89X39|RIMM_BRAJA RecName: Full=Ribosome maturation factor rimM
gi|27348731|dbj|BAC45748.1| 16S rRNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 173
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ LV +A IG HG+ G V + ++ +P + RY +L + R+ + + +
Sbjct: 1 MSALVCVARIGAAHGVRGAVKLWTFTEDPFAIKRYGPLLSKDGKRQFEVAQAREAKDHLV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ATF G+ A L ++LY R+ K +EDE+++TDL + G+ G+V
Sbjct: 61 ATFKGVTTRDEAERLNGIELYVARE--KLPATDEDEYYHTDLIGLAAVTTDGEPLGRVLA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++NFGAG I+EI + L+PF+ V EV++ ++++
Sbjct: 119 IHNFGAGDIIEIAPPKGASLLLPFSNAVVPEVDVAGGRVVV 159
>gi|146337523|ref|YP_001202571.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. ORS278]
gi|166226427|sp|A4YK99|RIMM_BRASO RecName: Full=Ribosome maturation factor rimM
gi|146190329|emb|CAL74325.1| 16S rRNA processing protein, putative function [Bradyrhizobium sp.
ORS278]
Length = 199
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ KL+ +A IG HG+ GEV + ++ +P+ + Y + + +R + K +
Sbjct: 2 MSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLV 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F GI + ++A L ++LY R E ++DE+++ DL + G G+V
Sbjct: 62 ASFKGITDRNAAERLNGVELYVPRDRLP--ETDDDEYYHADLIGLAAETTAGAPLGRVLA 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
++NFGAG I+EI T ++PFT V V+L +++I+
Sbjct: 120 IHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIE 161
>gi|148251974|ref|YP_001236559.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. BTAi1]
gi|166226426|sp|A5E909|RIMM_BRASB RecName: Full=Ribosome maturation factor rimM
gi|146404147|gb|ABQ32653.1| 16S rRNA processing protein RimM [Bradyrhizobium sp. BTAi1]
Length = 198
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ KL+ +A IG HG+ GEV + ++ +P+ + Y + + +R + K +
Sbjct: 1 MSKLICVAKIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVAKAREAKDHLV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
AT G+ + ++A L L+LY R E ++DE+++ DL + G G+V
Sbjct: 61 ATIKGVTDRNAAERLNGLELYVPRDRLP--ETDDDEYYHADLIGLAAETTAGAPLGRVLA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
++NFGAG I+EI T ++PFT V V+L +++I+
Sbjct: 119 IHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIE 160
>gi|260432698|ref|ZP_05786669.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416526|gb|EEX09785.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
Length = 167
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR---ILKMYRKNKRF 60
+ L+ + ++ ++G+ GEV + SY P D+ Y ++++ R I+ KN F
Sbjct: 1 MSDLICVGSVAGSYGVRGEVRLKSYCAVPEDIETYSPLTDESGTERYPLIITRAIKNG-F 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G++ A L+ L+LYA+R L +DEF++ DL +E +D G G+V
Sbjct: 60 AARLGGVETKEQADALKGLRLYARRAQLP--SLPDDEFYHADLIGLEVYDTGGTLLGKVK 117
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LE+ ++ T L+PFTK AV V+L+ +I+ DP
Sbjct: 118 SVQNHGADDLLELHGPGLKTTVLLPFTKAAVPTVDLEAGRIVADP 162
>gi|149201387|ref|ZP_01878362.1| 16S rRNA processing protein RimM [Roseovarius sp. TM1035]
gi|149145720|gb|EDM33746.1| 16S rRNA processing protein RimM [Roseovarius sp. TM1035]
Length = 169
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
+ + IG G+ GEV + S+ P D+ Y S ++ R + + A S
Sbjct: 7 ICVGAIGGAFGVRGEVRLKSFTAMPEDIAAYSPLSTEDGARAFDVTLTGQTTNGLTAQLS 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI +A LR ++LYA R + L +DEF++ DL +E +D G G+V V N
Sbjct: 67 GISTKEAADALRGMRLYALRAQLPN--LPDDEFYHADLIGLEVYDTGGAVLGRVKAVLNH 124
Query: 126 GAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA ILEI M T L+PFT AV V+L +I+ DP
Sbjct: 125 GASDILEIHAPGMSATILLPFTTEAVPTVDLAAGRIIADP 164
>gi|259417349|ref|ZP_05741268.1| 16S rRNA processing protein RimM [Silicibacter sp. TrichCH4B]
gi|259346255|gb|EEW58069.1| 16S rRNA processing protein RimM [Silicibacter sp. TrichCH4B]
Length = 171
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIATF 64
L+ + + + G+ GEV + S+ NP ++ Y L+ D + L + R K F A
Sbjct: 8 LICVGALAGSFGVRGEVRLKSFCANPEEIEDYSPLFGEDGQTRYTLAITRAVKNGFAARI 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+D A L+ ++LYA R D L +DEF++ DL +E FD G G+V V N
Sbjct: 68 VDVDTKEQADALKGVQLYALRDDLP--SLPDDEFYHADLIGLEVFDTGGTLLGRVKAVQN 125
Query: 125 FGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
+GA +LE+ + T L+PFTK AV V+L + +I+ DP
Sbjct: 126 YGADDLLELHGPGLSATVLLPFTKAAVPTVDLTQGRIIADP 166
>gi|158425577|ref|YP_001526869.1| 16S rRNA-processing protein RimM [Azorhizobium caulinodans ORS 571]
gi|172048026|sp|A8IKV0|RIMM_AZOC5 RecName: Full=Ribosome maturation factor rimM
gi|158332466|dbj|BAF89951.1| 16S rRNA processing protein [Azorhizobium caulinodans ORS 571]
Length = 177
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN-RELRILKMYRKNKRFIATFSG 66
+L+A IG HG+ GEV + ++ +P+ L RY L R ++ + F+A G
Sbjct: 5 ILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVARLEG 64
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
I + ++A L + L+ R E +ED F++ DL + D+ G G V +++FG
Sbjct: 65 IADRNAAEALTNTDLFVPRDALPAAE-DEDTFYHADLMGLRVEDQSGALLGTVLAMHDFG 123
Query: 127 AGSILE-IKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG +LE +T L+PFTK AV V++ +I++ P
Sbjct: 124 AGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVVVP 162
>gi|92119040|ref|YP_578769.1| 16S rRNA-processing protein RimM [Nitrobacter hamburgensis X14]
gi|122416838|sp|Q1QHI8|RIMM_NITHX RecName: Full=Ribosome maturation factor rimM
gi|91801934|gb|ABE64309.1| 16S rRNA processing protein RimM [Nitrobacter hamburgensis X14]
Length = 173
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
V +A IG HGL GEV + ++ +PI + RY S + R+ + +AT +
Sbjct: 5 VCVARIGAAHGLRGEVRLWTFTEDPIAVTRYGSLSTKDGARQFEVTHAREVKDYLVATLT 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A L LY R K +E EF++ DL + D GK G V ++NF
Sbjct: 65 GVTTREEAERLNGTDLYVARD--KLPATDEGEFYHADLIGLAAVDVAGKPLGTVAAIHNF 122
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GAG I+EI T ++PFT V V++ +++I+
Sbjct: 123 GAGDIIEIAPAHGPTLMLPFTDAVVPTVDIAGGRVVIE 160
>gi|209883426|ref|YP_002287283.1| 16S rRNA processing protein RimM [Oligotropha carboxidovorans OM5]
gi|209871622|gb|ACI91418.1| 16S rRNA processing protein RimM [Oligotropha carboxidovorans OM5]
Length = 174
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
+ +A IG HG+ GEV + + +P+ + Y S + ++ +L+ +AT
Sbjct: 7 ICVAKIGAAHGVRGEVRLWPFTEDPLAVLHYGPLSTRDGAKQFTVLRARAAKDHLVATLD 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ N A L ++LY R D + E E+++ DL + D QGK G + ++NF
Sbjct: 67 GVANRDDAERLNGIELYVSRDALPDTD--EGEYYHADLIGLAAVDPQGKSIGTIIAIHNF 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GAG I+EI T L+PFT V ++L ++I+
Sbjct: 125 GAGDIIEIAPNNGPTLLLPFTNAVVPTIDLAAGHVVIE 162
>gi|163744763|ref|ZP_02152123.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
gi|161381581|gb|EDQ05990.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
Length = 175
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSND-NRELRILKMYRKNKRFIATF 64
L+ + I +G+ GEV + SY P D+ Y LY+ D +R + +++ F A
Sbjct: 6 LICVGAIAGAYGVRGEVRVKSYCAAPEDIETYRPLYTEDGSRTFNLALLHQVKNGFAARI 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I A E+R L L+A R L +DEF++ DL +E +D G G+V V N
Sbjct: 66 AEITTKEEADEMRGLSLFAARDQLP--SLPDDEFYHADLIGLEVYDTGGTLLGRVKTVQN 123
Query: 125 FGAGSILE--IKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LE +K T TFL PFTK AV V+L +I+ DP
Sbjct: 124 HGADDLLELQLKGTSATTFL-PFTKAAVPTVDLASGRIVADP 164
>gi|56698087|ref|YP_168458.1| 16S rRNA-processing protein RimM [Ruegeria pomeroyi DSS-3]
gi|67461274|sp|Q5LNF0|RIMM_SILPO RecName: Full=Ribosome maturation factor rimM
gi|56679824|gb|AAV96490.1| 16S rRNA processing protein RimM [Ruegeria pomeroyi DSS-3]
Length = 167
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR---ILKMYRKNKRF 60
+ L+ + ++ + G+ GEV + S+ P D+ Y ++++ R +L KN F
Sbjct: 1 MSDLICVGSVAGSFGVRGEVRLKSFCAVPEDIEMYSPLTDESGTARYPIVLTRAIKNG-F 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G++ A L+ L+LY +R L +DEF++TDL +E FD G G+V
Sbjct: 60 AAHLGGVETKEEADALKGLRLYTQRDRLP--SLPDDEFYHTDLIGLEVFDTGGTLLGKVI 117
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LEI ++ L+PFT+ AV V+L++ +I+ DP
Sbjct: 118 SVQNHGAADLLEIGGAGLKSPVLLPFTQAAVPTVDLEQRRIVADP 162
>gi|220922841|ref|YP_002498143.1| 16S rRNA-processing protein RimM [Methylobacterium nodulans ORS
2060]
gi|254797756|sp|B8IGW5|RIMM_METNO RecName: Full=Ribosome maturation factor rimM
gi|219947448|gb|ACL57840.1| 16S rRNA processing protein RimM [Methylobacterium nodulans ORS
2060]
Length = 204
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR----FIAT 63
VL+ G HGL GEV + SY +P+ + Y + N L R IA
Sbjct: 28 VLLGEFGRAHGLQGEVRLKSYTADPMAIGSYGPLTGANGRAIALTALRPASGAPDMLIAR 87
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SG+ +A L L LY +R+ E +EDEFF+ DL + D G G + V
Sbjct: 88 VSGVSGRDAAEALNRLALYVRRECLGAPE-DEDEFFSADLIGLAVVDAAGTRLGTIRAVP 146
Query: 124 NFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
N+G G +LEI+ T L+PFT+ V +V++ ++ IDP
Sbjct: 147 NYGGGDLLEIEPTGGGAAALLPFTRAFVPKVDIAAREVTIDP 188
>gi|114571436|ref|YP_758116.1| 16S rRNA processing protein RimM [Maricaulis maris MCS10]
gi|122315003|sp|Q0AKL5|RIMM_MARMM RecName: Full=Ribosome maturation factor rimM
gi|114341898|gb|ABI67178.1| 16S rRNA processing protein RimM [Maricaulis maris MCS10]
Length = 185
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNK-RFIA 62
D LV +A I HG+ GE + S+A NP D +Y + + D + + K R K F+
Sbjct: 6 DDLVFIAAIAGAHGVRGECKVKSFAGNPADAFKYGAFLDIDGKTILTPKAARPVKDGFVV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+ + A L+ KL+ R ELEEDEF+++DL ++ G G + V
Sbjct: 66 RFAEPLDRDKAQALKGTKLHVLRSALP--ELEEDEFYHSDLLGLKVQGLDGAPMGTLKAV 123
Query: 123 YNFGAGSILEIKNTMEK--TFLIPFTKFAVLEVNLQENKILIDP 164
+NFG+G +LEI T ++ ++++PFT+ V V++ E I IDP
Sbjct: 124 HNFGSGDLLEITGTPDRNGSWMLPFTREFVPHVSIAEGVITIDP 167
>gi|209965493|ref|YP_002298408.1| 16S rRNA processing protein RimM, putative [Rhodospirillum centenum
SW]
gi|238058954|sp|B6IP93|RIMM_RHOCS RecName: Full=Ribosome maturation factor rimM
gi|209958959|gb|ACI99595.1| 16S rRNA processing protein RimM, putative [Rhodospirillum centenum
SW]
Length = 201
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
+++A I HG++G V + S+ + + Y ++++ RE ++ + F+A
Sbjct: 5 IVVAQILGAHGVHGRVKLKSFTADETAVFGYAPLTDESGRREFKLRRTGTGKDHFLAEVD 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI +A LR +LY +R E +EDEF++ DL ++T + +G + +Y+F
Sbjct: 65 GITGKEAADALRGTRLYIERDRLPAPE-DEDEFYHADLIGLDTVTADDQPFGTIKAIYDF 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
GAG +LEI++ EKT +PFTK V + + +++++P A
Sbjct: 124 GAGDMLEIRHVSEKTVFLPFTKACVPVIEIAAGRVVVEPPA 164
>gi|240137229|ref|YP_002961698.1| putative 16S rRNA processing protein [Methylobacterium extorquens
AM1]
gi|240007195|gb|ACS38421.1| putative 16S rRNA processing protein [Methylobacterium extorquens
AM1]
Length = 223
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+S+D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHSSDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRSGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDP 164
V NFG G +LEI+ T L+PFTK V +++ K++ DP
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADP 206
>gi|85706778|ref|ZP_01037870.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
gi|85668836|gb|EAQ23705.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
Length = 169
Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDN-RELRILKMYRKNKRFIATFS 65
+ + IG G+ GEV + S+ P D+ Y L S D R+ I + F A S
Sbjct: 7 ICVGAIGGAFGVRGEVRLKSFTAMPEDIASYSPLTSEDGTRQFDISLTGQTTNGFTAHLS 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI +A LR +LYA R + L +DE+++ DL +E FD G G+V V N
Sbjct: 67 GIATKEAADALRGTRLYALRAQLPN--LPDDEYYHADLIGLEVFDTGGTLLGRVKAVLNH 124
Query: 126 GAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LEI + T L+PFT AV V+L +I+ DP
Sbjct: 125 GASDLLEIHGPGLSATVLLPFTLEAVPTVDLASGRIIADP 164
>gi|254437096|ref|ZP_05050590.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
gi|198252542|gb|EDY76856.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
Length = 183
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNK- 58
M D +++ TI + G+NG+V + S+ +P L Y L D ++ + + + K
Sbjct: 1 MPMSDDRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIMTIVIKGQTKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA GI A LR + LYA+R L +DEF++TDL + T+D G G+
Sbjct: 61 SLIARVDGITTKEEADGLRGMDLYAQRDQLP--SLPDDEFYHTDLVGLMTYDTGGAKLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V GA +LEI + +K T L+PFTK V V+L +I++DP
Sbjct: 119 VKAVQTNGADDLLEIISPSDKDTVLVPFTKANVPTVDLASGRIVVDP 165
>gi|146276238|ref|YP_001166397.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides ATCC
17025]
gi|166226472|sp|A4WNX8|RIMM_RHOS5 RecName: Full=Ribosome maturation factor rimM
gi|145554479|gb|ABP69092.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides ATCC
17025]
Length = 169
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNK 58
M + D+L + A G G+ GEV + S+ P D+ Y L++ D R R+
Sbjct: 1 MTRTDRLCVGAIAGA-FGVKGEVRLKSFCAEPSDIASYGPLFTEDGGRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A SG+ A LR ++LYA R L +DEF++ DL +E D G G+
Sbjct: 60 ALGARLSGVATKEEADALRGVQLYADRDRLP--SLGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEVTGAGRREALLLPFTRAVVPTVDLSIGRIVADP 164
>gi|163738187|ref|ZP_02145603.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis BS107]
gi|161388803|gb|EDQ13156.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis BS107]
Length = 167
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIATFS 65
+ + I ++G+ GEV + S+ P D+ Y L + D + + + R K F A
Sbjct: 5 ICVGAISGSYGVRGEVRLKSFCAMPEDIEDYSPLSTEDGSQTYTITLVRAIKNGFTARIG 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI+ A L+ ++L+A R+ + L +DE+++TDL +E +D G G V V N
Sbjct: 65 GIETKEQADALKGVRLFAPRERLPN--LPDDEYYHTDLMGLEVYDTGGTLLGSVKSVQNH 122
Query: 126 GAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LEI E KT L+PFT AV V+L +I+ DP
Sbjct: 123 GASDLLEIAIPAESKTVLLPFTLAAVPTVDLASGRIIADP 162
>gi|329847287|ref|ZP_08262315.1| 16S rRNA processing protein RimM [Asticcacaulis biprosthecum C19]
gi|328842350|gb|EGF91919.1| 16S rRNA processing protein RimM [Asticcacaulis biprosthecum C19]
Length = 166
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFS 65
LVL+A +G HG+ GE + S+ ++P+ L + L + ++ R +K + F+
Sbjct: 6 LVLVAQVGAPHGVQGEFKLMSFMDDPLSLLEHSPLLDVAGKPALVVTKARAHKGALLVFA 65
Query: 66 GIDNIHSASE-LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+A+E L+ KLY R D D + E+E++ TDL M+ D G G+V V N
Sbjct: 66 EQAPDRTAAEKLKGQKLYVDRADLPDTD--EEEYYVTDLIGMDVVDTSGNMVGKVVNVDN 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG +L++K +F +PFT V +V+L E +I++D
Sbjct: 124 FGAGDLLDVKPLEGVSFYVPFTLAHVPQVHLAEGRIVVD 162
>gi|188579901|ref|YP_001923346.1| 16S rRNA-processing protein RimM [Methylobacterium populi BJ001]
gi|209573581|sp|B1ZL68|RIMM_METPB RecName: Full=Ribosome maturation factor rimM
gi|179343399|gb|ACB78811.1| 16S rRNA processing protein RimM [Methylobacterium populi BJ001]
Length = 224
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR-----F 60
LVL+ G HGL+GEV + S+ P+ + Y L+++D R L L+ R
Sbjct: 45 LVLLGEFGRPHGLHGEVRLKSFTGEPLAIAGYGPLHASDGRTLE-LEDARPAPGGSPDLL 103
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+DN A L + L R+ E +EDEFF TDL + D G G +
Sbjct: 104 IVRVKGVDNRSGAEALNRITLAIARERLGQAE-DEDEFFLTDLIGLAVEDPSGTVIGTIV 162
Query: 121 GVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDP 164
V N+G G +LEI+ T L+PFTK V ++L K++ DP
Sbjct: 163 AVPNYGGGDLLEIRPAAGGPTALLPFTKAFVPTLDLAGGKVVADP 207
>gi|295691477|ref|YP_003595170.1| 16S rRNA processing protein RimM [Caulobacter segnis ATCC 21756]
gi|295433380|gb|ADG12552.1| 16S rRNA processing protein RimM [Caulobacter segnis ATCC 21756]
Length = 188
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIA 62
D L+L+ + G+ GEV I +Y +P+ + + L D + RK K +
Sbjct: 7 DPLILVGRVAGGFGVRGEVRISTYTEDPMSIAAFKALKRQDGSPALTIASARKTKDGVVC 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCG 121
G++ +A LR L+LY R E +EDEF+ TDL + Q + G+V
Sbjct: 67 RCPGVETKEAADALRGLRLYVPRSALP--EPDEDEFYLTDLVGLTVRHIQTDQLLGRVKS 124
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIA 166
V NFGAG ILEI + T+ +PFT+ AV EV + E IL DP A
Sbjct: 125 VQNFGAGDILEITPDLGGPTWYLPFTRAAVPEVKISEGLILADPPA 170
>gi|316931784|ref|YP_004106766.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris DX-1]
gi|315599498|gb|ADU42033.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris DX-1]
Length = 176
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P +N Y ++ + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVNDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R K E DE+++ DL + G G+V ++N
Sbjct: 65 KGVTTRDEAERLNGVELYVARD--KLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+EI T L+PFT V V+L +++I+
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIE 161
>gi|39933320|ref|NP_945596.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
CGA009]
gi|59798745|sp|Q6ND66|RIMM_RHOPA RecName: Full=Ribosome maturation factor rimM
gi|39652945|emb|CAE25687.1| putative 16S rRNA processing protein [Rhodopseudomonas palustris
CGA009]
Length = 176
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P ++ Y ++ + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R K E DE+++ DL + G G+V ++N
Sbjct: 65 KGVTTRDEAERLNGVELYVARD--KLPPTEADEYYHADLIGLAAVTTTGDPLGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
FGAG I+EI T L+PFT V V+L +++I+P
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAVGQVVIEP 162
>gi|218528699|ref|YP_002419515.1| 16S rRNA-processing protein RimM [Methylobacterium chloromethanicum
CM4]
gi|254797755|sp|B7KZ57|RIMM_METC4 RecName: Full=Ribosome maturation factor rimM
gi|218521002|gb|ACK81587.1| 16S rRNA processing protein RimM [Methylobacterium chloromethanicum
CM4]
Length = 223
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDP 164
V NFG G +LEI+ T L+PFTK V +++ K++ DP
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADP 206
>gi|114763698|ref|ZP_01443092.1| 16S rRNA processing protein RimM [Pelagibaca bermudensis HTCC2601]
gi|114543699|gb|EAU46712.1| 16S rRNA processing protein RimM [Roseovarius sp. HTCC2601]
Length = 173
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR- 59
+ + + + TI G+NGEV + S+ P L Y L + D +++ R K
Sbjct: 4 ASVSETICVGTIAGAFGVNGEVRLKSFTAEPEALAEYAPLTTEDGSRSFEVQITRSVKGG 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F A SG+ + A LR LYA R L +DEF++TDL + FD G G+V
Sbjct: 64 FAARLSGVRSKEEADALRGTGLYAPRDRLPT--LPDDEFYHTDLIGLAVFDTGGAELGRV 121
Query: 120 CGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LE+ + KT L+PFT+ AV V+L +I+ DP
Sbjct: 122 KAVLNHGATDLLELTAPGQSKTVLLPFTREAVPTVDLASGRIVADP 167
>gi|89069752|ref|ZP_01157088.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
gi|89044698|gb|EAR50809.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
Length = 175
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNK-RFIA 62
D V++ +I G+ GEV + SY +P + Y L++ D R + + + + K IA
Sbjct: 6 DSRVVVGSIAGAFGVRGEVRLKSYCADPAAIADYTPLHTEDGRTIAQVVITGETKGALIA 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI A LR L+A R L +DEF++ DL + +D G G V V
Sbjct: 66 RLDGIATKEQADALRGTALHAARDRLP--SLPDDEFYHADLLGLPVYDGGGTMLGTVKAV 123
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
++ GAG +LE+ ++ T L+PFT+ V V+L +I+ DP
Sbjct: 124 HDHGAGDLLEVHGPGLKSTVLLPFTREIVPTVDLAAGRIVADP 166
>gi|86747477|ref|YP_483973.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris HaA2]
gi|109893041|sp|Q2J398|RIMM_RHOP2 RecName: Full=Ribosome maturation factor rimM
gi|86570505|gb|ABD05062.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris HaA2]
Length = 182
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKR 59
+ + + V +A IG HG+ G + + S+ +P+ + Y S + R I
Sbjct: 6 ISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATARAAKDH 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ T G+ A L L+LY R E+DE+++ DL + G+ G+V
Sbjct: 66 LVVTLKGVTTRDEAVRLNGLELYVPRDALP--PTEDDEYYHADLIGLPAITTSGEPLGRV 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
++NFGAG I+EI T L+PFT V V+L +++I+ + A + T +P+
Sbjct: 124 LAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLAAGQVIIE-LPAEIEGDTPNHPE 181
>gi|254510633|ref|ZP_05122700.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
gi|221534344|gb|EEE37332.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
Length = 167
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR---ILKMYRKNKRF 60
+ L+ + +I ++G+ GEV + S+ P D+ Y +++ R +L KN F
Sbjct: 1 MSDLICVGSIAGSYGVRGEVRLKSFCAVPEDIEGYSPLTDEAGAKRFPVVLTRTIKNG-F 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G++ A L L+L+A+R L +DEF++TDL +E +D G G+V
Sbjct: 60 AARLGGVETKEEADALSGLRLFARRDQLP--SLPDDEFYHTDLIGLEVYDTGGTLLGRVK 117
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LE+ ++ T L+PFT AV V+L + +I+ DP
Sbjct: 118 SVQNHGAADLLELHGPGLKSTVLLPFTLDAVPTVDLDKGRIIADP 162
>gi|84683441|ref|ZP_01011344.1| 16S rRNA processing protein RimM [Maritimibacter alkaliphilus
HTCC2654]
gi|84668184|gb|EAQ14651.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2654]
Length = 170
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR-FIA 62
D++ + A G+ G+ GEV + S+ P D+ Y L++ D L + R K F A
Sbjct: 4 DRICVGAFAGS-FGVGGEVRVKSFCAEPEDIETYGTLWTEDGTRSFTLSLTRAVKTGFAA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI A L+ ++LYA R L +DEF++ DL + D G G+V V
Sbjct: 63 DVDGITTKEQADALKGVRLYADRDALP--SLPDDEFYHADLIGLTVLDTGGAEVGRVSAV 120
Query: 123 YNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDP 164
+N GAG ++E+ KT L+PFT+ V V+L +I+IDP
Sbjct: 121 HNHGAGDLIEVAGPGLKTPALVPFTRANVPTVDLTAGRIVIDP 163
>gi|254449413|ref|ZP_05062850.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 238]
gi|198263819|gb|EDY88089.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 238]
Length = 183
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNK- 58
M D +++ T+ + G+NG+V + S+ +P L Y L D E+ + + + K
Sbjct: 1 MPMSDDRIVVGTLAGSFGVNGDVRLKSFCADPEALADYTPLTRADGSEITTIVIKGQTKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA GI A LR ++LYA+R L +DE+++ DL + T+D G G+
Sbjct: 61 SLIARVDGITTKEEADGLRGMELYARRDQLP--SLPDDEYYHADLVGLMTYDTGGAKLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V GA +LEI + +K T L+PFTK V V+L +I++DP
Sbjct: 119 VKAVQTNGADDLLEIISPSDKDTVLVPFTKVIVPTVDLASGRIVLDP 165
>gi|163850096|ref|YP_001638139.1| 16S rRNA processing protein RimM [Methylobacterium extorquens PA1]
gi|209573569|sp|A9W0G2|RIMM_METEP RecName: Full=Ribosome maturation factor rimM
gi|163661701|gb|ABY29068.1| 16S rRNA processing protein RimM [Methylobacterium extorquens PA1]
Length = 223
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGKVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDP 164
V NFG G +LEI+ T L+PFTK V +++ K++ DP
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADP 206
>gi|254559240|ref|YP_003066335.1| 16S rRNA processing protein [Methylobacterium extorquens DM4]
gi|254266518|emb|CAX22282.1| putative 16S rRNA processing protein [Methylobacterium extorquens
DM4]
Length = 223
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V NFG G +LEI T L+PFTK V +++ K++ DP
Sbjct: 163 VPNFGGGDLLEICPAAGGPTALLPFTKAFVPSLDIAGGKVVADP 206
>gi|217979018|ref|YP_002363165.1| 16S rRNA-processing protein RimM [Methylocella silvestris BL2]
gi|217504394|gb|ACK51803.1| 16S rRNA processing protein RimM [Methylocella silvestris BL2]
Length = 199
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYR-KNKRFI 61
D+LVL+ G HG+ GE+ + S+ NP ++ Y ++ + IL K F+
Sbjct: 12 DRLVLIGRFGAPHGVRGELRLQSFTENPAAISSYGPLTDRLGAKAFSILTARAVKPDLFV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A L +++++ R+ K EDEF+ DL +E D +G+V
Sbjct: 72 VKLKGVDDRTAAEALTNVEVFVARE--KLPAAAEDEFYLADLIGLEALDASRAPFGRVKN 129
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V +FGAG ILEI+ +T L+PFT+ E++L I+IDP
Sbjct: 130 VLDFGAGDILEIEPAGGGETLLLPFTRQVAPEIDLAAGFIVIDP 173
>gi|310814611|ref|YP_003962575.1| putative 16S rRNA processing protein [Ketogulonicigenium vulgare
Y25]
gi|308753346|gb|ADO41275.1| putative 16S rRNA processing protein [Ketogulonicigenium vulgare
Y25]
Length = 168
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMY-RKNKRFIATFS 65
+++ I + G+ G++ + S+ P D+ Y LY++D R R++ + + N +A
Sbjct: 5 IVLGQIAGSFGVRGDLRLKSFCAIPEDIAIYTPLYTDDGRVFRVVVITGQTNGALVARIE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI + A LR L A R + L +DEF+++DL ++E D G G+V V N
Sbjct: 65 GISSKEEADALRGQNLSADRDRLPN--LPDDEFYHSDLIDLEVLDTGGAILGRVKTVLNH 122
Query: 126 GAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
GAG ILE++ T + T L+PFT V V+L+ +I+ DP
Sbjct: 123 GAGDILEVQLTGKPATALLPFTLAIVPTVDLKAGRIIADP 162
>gi|84515964|ref|ZP_01003325.1| putative 16S rRNA processing protein [Loktanella vestfoldensis
SKA53]
gi|84510406|gb|EAQ06862.1| putative 16S rRNA processing protein [Loktanella vestfoldensis
SKA53]
Length = 171
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNREL-RILKMYRKNKRFIATFS 65
V++ IG + G+ GEV + S+ +P+ + Y LY+ + +++ + F A S
Sbjct: 5 VIVGMIGGSFGVKGEVRLKSFCADPMAIADYTPLYTEHGDSIAQVVLTGQLKGGFTARLS 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A LR++ LYA+R L +DE++ DL + D G GQV V +
Sbjct: 65 GVVTKEDADALRNVALYAERAAMP--SLPDDEYYYADLIGLAVLDTGGSKLGQVKSVVDH 122
Query: 126 GAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAA 167
GAG++LE+ + T L+PFT+ AV V+L +I+ DP A
Sbjct: 123 GAGALLELHVPGQSDTVLLPFTQAAVPTVDLAAGRIIADPPAG 165
>gi|163743781|ref|ZP_02151154.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis 2.10]
gi|161382930|gb|EDQ07326.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis 2.10]
Length = 167
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR-FIATFS 65
+ + I ++G+ GEV + S+ P D+ Y L + D + + + R K F A
Sbjct: 5 ICVGAISGSYGVRGEVRLKSFCAMPEDIEDYSPLSTEDGSQTYTITLVRAIKNGFTARIG 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI+ A L+ ++L+A R L +DE+++TDL +E +D G G V V N
Sbjct: 65 GIETKEQADALKGIRLFAPRDRLP--SLPDDEYYHTDLMGLEVYDTGGTLLGTVKSVQNH 122
Query: 126 GAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LEI + KT L+PFT AV V+L +I+ DP
Sbjct: 123 GASDLLEITIPADSKTVLLPFTLAAVPTVDLAAGRIIADP 162
>gi|192288675|ref|YP_001989280.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris TIE-1]
gi|238692575|sp|B3Q855|RIMM_RHOPT RecName: Full=Ribosome maturation factor rimM
gi|192282424|gb|ACE98804.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris TIE-1]
Length = 176
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P ++ Y ++ + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R K E DE+++ DL + G G+V ++N
Sbjct: 65 KGVATRDEAERLNGVELYVARD--KLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+EI T L+PFT V V+L +++I+
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIE 161
>gi|16127881|ref|NP_422445.1| 16S rRNA processing protein RimM [Caulobacter crescentus CB15]
gi|221236702|ref|YP_002519139.1| 16S rRNA-processing protein RimM [Caulobacter crescentus NA1000]
gi|21362873|sp|Q9A2B4|RIMM_CAUCR RecName: Full=Ribosome maturation factor rimM
gi|13425407|gb|AAK25613.1| 16S rRNA processing protein RimM [Caulobacter crescentus CB15]
gi|220965875|gb|ACL97231.1| 16S rRNA processing protein rimM [Caulobacter crescentus NA1000]
Length = 193
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIA 62
D L+L+ + G+ GEV I +Y +P+ + + L D + RK K +
Sbjct: 7 DPLILVGRVAGGFGVRGEVRITTYTEDPLSIAGFKALKRQDGSPALTIASARKTKDGVVC 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCG 121
G++ +A LR L+LY R E ++DEF+ TDL + Q + G+V
Sbjct: 67 RCPGVETKEAADALRGLRLYVPRSALP--EPDDDEFYLTDLVGLTVRHIQTDQLLGRVKS 124
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIA 166
V NFGAG ILEI + T+ +PFT+ AV EV + E IL DP A
Sbjct: 125 VQNFGAGDILEITPDLGGPTWYLPFTRAAVPEVRVSEGLILADPPA 170
>gi|126463468|ref|YP_001044582.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides ATCC
17029]
gi|166226471|sp|A3PN94|RIMM_RHOS1 RecName: Full=Ribosome maturation factor rimM
gi|126105132|gb|ABN77810.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides ATCC
17029]
Length = 169
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + +R R+
Sbjct: 1 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 60 GLGARLSDVTTKEEADALRGVGLYVDRARLP--SLGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V+N GAG ILEI + + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEIAGAVGREGLLLPFTRAVVPTVDLAAGRIVADP 164
>gi|159042900|ref|YP_001531694.1| 16S rRNA-processing protein RimM [Dinoroseobacter shibae DFL 12]
gi|209573577|sp|A8LMB6|RIMM_DINSH RecName: Full=Ribosome maturation factor rimM
gi|157910660|gb|ABV92093.1| 16S rRNA processing protein RimM [Dinoroseobacter shibae DFL 12]
Length = 166
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSG 66
V + + G+ GE+ I S+ P D+ Y L D RE + + +G
Sbjct: 5 VCVGAVAGAFGVRGELRIKSFCAVPEDIASYNPLSFEDGRETTLRLTGQIKNGLSGRLTG 64
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ N +A LR +LYA R L +DEF++ DL + D G G+V V+N G
Sbjct: 65 VSNKEAADALRGARLYAPRDRLP--RLPDDEFYHADLIGLAVHDTGGTLLGKVAAVHNHG 122
Query: 127 AGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG +LE++ ++ + L+PFT+ V V+L +I+ DP
Sbjct: 123 AGDLLELRGPGLKGSVLLPFTRAVVPTVDLDAGRIVADP 161
>gi|299133091|ref|ZP_07026286.1| 16S rRNA processing protein RimM [Afipia sp. 1NLS2]
gi|298593228|gb|EFI53428.1| 16S rRNA processing protein RimM [Afipia sp. 1NLS2]
Length = 180
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K + + +A IG HG+ GEV + + + + + Y S + R+ + +
Sbjct: 1 MAKAAQKICVAKIGAAHGVRGEVRLWPFTEDLLAVLHYGPLSTKDGARQFEVARARAAKD 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+AT G+ + +A L ++LY R E ++ E+++ DL + D QG G
Sbjct: 61 HLVATLKGVADRDAAERLNGIELYISRDALP--ETDDGEYYHADLIGLAAIDAQGASLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V ++NFGAG I+EI + L+PFT V V+L ++++
Sbjct: 119 VTAIHNFGAGDIIEIAPKSGPSLLLPFTNAVVPTVDLAAGHVIVE 163
>gi|254476323|ref|ZP_05089709.1| 16S rRNA processing protein RimM [Ruegeria sp. R11]
gi|214030566|gb|EEB71401.1| 16S rRNA processing protein RimM [Ruegeria sp. R11]
Length = 167
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNKR-FIATFS 65
+ + I ++G+ GEV + S+ P D+ Y SN D + L + R K F A
Sbjct: 5 ICVGAIAGSYGVRGEVRLKSFCAIPEDIEAYSPLSNEDGTQSYTLVLVRAIKNGFTARVG 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G++ A L+ L+L+A+R L +DE+++TDL +E +D G G V V N
Sbjct: 65 GVETKEQADALKGLRLFAQRDRLP--SLPDDEYYHTDLMGLEVYDTGGTLLGTVKTVQNH 122
Query: 126 GAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LEI T L+PFT AV V+L +I+ DP
Sbjct: 123 GASDLLEITVPGHSSTILLPFTLAAVPTVDLASGRIIADP 162
>gi|89053239|ref|YP_508690.1| 16S rRNA-processing protein RimM [Jannaschia sp. CCS1]
gi|109893020|sp|Q28UE7|RIMM_JANSC RecName: Full=Ribosome maturation factor rimM
gi|88862788|gb|ABD53665.1| 16S rRNA processing protein RimM [Jannaschia sp. CCS1]
Length = 187
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR-FIATFSGI 67
+ I + G+ GEV + S+ P D+ Y L + D + + + R K + A SG+
Sbjct: 9 VGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAGYAAMLSGV 68
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
A LR +LYA R L +DEF++ DL + D G+ G V V N GA
Sbjct: 69 ATKEDADALRGTRLYAPRSALP--SLPDDEFYHADLVGLTVLDTGGEVIGTVASVANHGA 126
Query: 128 GSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILID 163
G ILE+ + LIPFT V V++ ++++D
Sbjct: 127 GDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRVIVD 163
>gi|126738059|ref|ZP_01753780.1| 16S rRNA processing protein RimM [Roseobacter sp. SK209-2-6]
gi|126720556|gb|EBA17261.1| 16S rRNA processing protein RimM [Roseobacter sp. SK209-2-6]
Length = 167
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FI 61
+ +L+ + I ++G+ GEV + S+ P ++ Y L S D + L + R K F
Sbjct: 1 MSELICVGAIAGSYGVRGEVRLKSFCAVPEEIEAYSPLSSEDGSQSYSLTLTRAIKGGFS 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G++ A ++ LKL+A R L DE++ DL ME +D G G V
Sbjct: 61 GYLGGVETKEQADAIKGLKLFAPRDRLPS--LPSDEYYYADLVGMEVYDTGGVLLGTVKS 118
Query: 122 VYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LE++ ++ T L+PFT AV V+L++ +I+ DP
Sbjct: 119 VQNHGASDLLELQGEAIKGTALLPFTMAAVPTVDLEQGRIIADP 162
>gi|84501321|ref|ZP_00999526.1| 16S rRNA processing protein RimM [Oceanicola batsensis HTCC2597]
gi|84390612|gb|EAQ03100.1| 16S rRNA processing protein RimM [Oceanicola batsensis HTCC2597]
Length = 166
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIA 62
+ + V + I ++G+ GEV + S+ +P + Y + DN + + R K F A
Sbjct: 1 MTETVCVGAIAGSYGVRGEVRLKSFCADPEAIAEYGPLTGDNGASYSVTLTRPIKNGFAA 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ A L+ ++L+A R EEDEF++ DL + D G G + V
Sbjct: 61 RLGGVATKEEADALKGVQLFAPRDRLP--ATEEDEFYHADLIGLRVVDTGGTEIGTIRAV 118
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ GAG +LEIK ++ T L+PFT+ V V+L K++ DP
Sbjct: 119 MDHGAGDLLEIKGPGLKNTVLLPFTRACVPTVDLAGGKVVADP 161
>gi|77464628|ref|YP_354132.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides 2.4.1]
gi|332559521|ref|ZP_08413843.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides WS8N]
gi|109893044|sp|Q3IZ03|RIMM_RHOS4 RecName: Full=Ribosome maturation factor rimM
gi|77389046|gb|ABA80231.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides 2.4.1]
gi|332277233|gb|EGJ22548.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides WS8N]
Length = 169
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + +R R+
Sbjct: 1 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 60 GLGARLSDVTTKEEADALRGVGLYVDRARLP--SLGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEVAGAAGREGLLLPFTRAVVPTVDLAAGRIVADP 164
>gi|221640540|ref|YP_002526802.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides KD131]
gi|221161321|gb|ACM02301.1| 16S rRNA-processing protein rimM [Rhodobacter sphaeroides KD131]
Length = 176
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + +R R+
Sbjct: 8 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 67 GLGARLSDVTTKEEADALRGVGLYVDRARLP--SLGDDEFYHADLIGLEVRDTGGALLGR 124
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 125 VHAVHNHGAGDILEVAGAAGREGLLLPFTRAVVPTVDLAAGRIVADP 171
>gi|312115619|ref|YP_004013215.1| 16S rRNA processing protein RimM [Rhodomicrobium vannielii ATCC
17100]
gi|311220748|gb|ADP72116.1| 16S rRNA processing protein RimM [Rhodomicrobium vannielii ATCC
17100]
Length = 193
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK--RFIATF 64
VL+ IG HGL GEV I ++ P D+ Y L S D ++ R IA
Sbjct: 6 VLLGRIGGAHGLRGEVKIATFTAAPEDITAYGPLSSADGTRTFVITGMRAASPGSVIARL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + A L ++LY R E E+DEF+ +DL + +G G+V GV+N
Sbjct: 66 KGVADRTQAEALNGIELYVPRDSLPPPE-EDDEFYYSDLIGLAAVSPEGAAVGKVIGVHN 124
Query: 125 FGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILI 162
FGAG ++E++ E+ LIPF V V+L ++ +
Sbjct: 125 FGAGDLIEVRFGDERQPVLIPFDNAHVPHVDLGAGRVTV 163
>gi|323135866|ref|ZP_08070949.1| 16S rRNA processing protein RimM [Methylocystis sp. ATCC 49242]
gi|322398957|gb|EFY01476.1| 16S rRNA processing protein RimM [Methylocystis sp. ATCC 49242]
Length = 177
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 6/162 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK-RFIAT 63
LVL+ G HG+ GE+ + SY +P+ + Y ++ + + ++ + + K +A
Sbjct: 7 LVLLGRFGAPHGVRGEIRLQSYTADPLAIASYGPLTDKSGTKSFKLASVRPQGKDMLVAR 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + A L ++LY R+ + EDEF+ DL + R+G G+V V
Sbjct: 67 VEGVSDRTGAEALTGVELYLPREKLPPPD--EDEFYLADLVGLRAQTREGVEIGRVVAVR 124
Query: 124 NFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
NFGAG ILE+ +T + PFT+ V++ E +++I+P
Sbjct: 125 NFGAGDILEVTPPDGGETLMFPFTRAVAPVVSIAEGRVIIEP 166
>gi|149915428|ref|ZP_01903955.1| putative 16S rRNA processing protein [Roseobacter sp. AzwK-3b]
gi|149810717|gb|EDM70558.1| putative 16S rRNA processing protein [Roseobacter sp. AzwK-3b]
Length = 170
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRI-LKMYRKNKRFI 61
D + + I G++GE+ + S+ P D+ Y L + D R I L I
Sbjct: 4 DTRICLGAIAGAFGVHGELRLKSFTATPEDIAAYGPLETEDGARSFEITLSGQSAKGGLI 63
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG+ A LR ++LY +R L ++E+++ DL +E +D G G+V
Sbjct: 64 ARLSGVTTKEQADALRGVRLYTERDRLP--ALPDEEYYHADLIGLEVYDTGGTLLGRVKA 121
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GAG ILE+ + T L+PFT+ AV V+L +I+ DP
Sbjct: 122 VLNHGAGDILELHGQGLTSTVLLPFTRQAVPTVDLAAGRIVADP 165
>gi|254464202|ref|ZP_05077613.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
gi|206685110|gb|EDZ45592.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
Length = 167
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNKR-FI 61
+ L+ + I + G+ GEV + S+ P ++ Y SN D + L + R K F
Sbjct: 1 MSDLICVGAIAGSFGVRGEVRLKSFCAVPEEIEDYSPLSNEDGSKTYSLTITRPIKNGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A ++ L+L+A+R L +DEF++ DL +E +D G G V
Sbjct: 61 ALLEGVETKEDADAIKGLRLFARRDQLP--LLPDDEFYHADLIGLEVYDTGGTLLGTVKS 118
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N GA +LEI ++ T L+PFT AV V+L + +I+ DP
Sbjct: 119 VQNHGASDLLEIHGPGLKATVLLPFTLEAVPTVDLTQGRIIADP 162
>gi|99082449|ref|YP_614603.1| 16S rRNA-processing protein RimM [Ruegeria sp. TM1040]
gi|122397563|sp|Q1GDC5|RIMM_SILST RecName: Full=Ribosome maturation factor rimM
gi|99038729|gb|ABF65341.1| 16S rRNA processing protein RimM [Ruegeria sp. TM1040]
Length = 171
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIATF 64
L+ + + + G+ GEV + S+ N ++ Y L D + L + R K F A
Sbjct: 8 LICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAARI 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
++ A L+ ++LYA R L +DEF++ DL +E +D G G+V V N
Sbjct: 68 VDVETKEQADALKGVQLYAPRDRLP--SLPDDEFYHADLIGLEVYDTGGTLLGRVKAVQN 125
Query: 125 FGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+GA +LE+ + T L+PFTK AV V+L + +I+ DP A
Sbjct: 126 YGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQGRIIADPPAG 169
>gi|209573738|sp|B0UCL3|RIMM_METS4 RecName: Full=Ribosome maturation factor rimM
Length = 209
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNR--ELRILKMYRKNKR-FI 61
+LV++ G HGL GEV + SY P+ + Y L ++D R EL L+ +
Sbjct: 31 RLVVLGEFGRAHGLQGEVRLKSYTAEPMAIGGYGPLLASDGRVVELTALRPAAGTPDILV 90
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A +G+ +A L L L R E +EDEFF DL + D G G +
Sbjct: 91 ARVAGVAGRSAAEGLNRLTLSVPRDRLGAPE-DEDEFFTADLVGLAAVDAAGTRLGTIRA 149
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V N+G G +LEI+ + L+PFT+ V +V + ++ I P
Sbjct: 150 VPNYGGGDLLEIEPEGGGRPALLPFTRLFVPKVEIAAGRVTIAP 193
>gi|83951191|ref|ZP_00959924.1| putative 16S rRNA processing protein [Roseovarius nubinhibens ISM]
gi|83839090|gb|EAP78386.1| putative 16S rRNA processing protein [Roseovarius nubinhibens ISM]
Length = 167
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNKRFIA 62
DK+ + A G G+ GE+ + S+ P D+ Y L + D R + + A
Sbjct: 3 DKICVGAIAGA-FGVRGELRLKSFTATPEDIATYGPLETEDGARSFAVTLTGQTTNALTA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
SG+ + A LR +LY R L +DE+++ DL +E FD G G+V V
Sbjct: 62 RLSGVQSKEEADALRGTQLYVARDRLP--SLPDDEYYHADLIGLEVFDSGGALLGRVKAV 119
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
N GA +LEI ++ T L+PFT+ AV V+L +I+ DP
Sbjct: 120 LNHGASDLLEIHGPGLKSTVLLPFTRAAVPTVDLATGRIVADP 162
>gi|294675923|ref|YP_003576538.1| 16S rRNA processing protein RimM [Rhodobacter capsulatus SB 1003]
gi|294474743|gb|ADE84131.1| 16S rRNA processing protein RimM [Rhodobacter capsulatus SB 1003]
Length = 169
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRK-NK 58
M K D++ + A G G+ GEV + S+ P D+ Y LYS D +++ R
Sbjct: 1 MSKTDRVCVGAIAGG-FGVKGEVRLKSFCATPEDIAAYGPLYSEDGTRSFTVRLTRPVTG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A SGI A L+ L+A R L +DEF++ DL + D G G
Sbjct: 60 GLGARLSGIATKEEADALKGATLWADRDRLP--HLPDDEFYHADLIGLPVQDTGGALIGT 117
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V V +FGAG ILE+ K T ++PFT+ V V+L +I+ DP
Sbjct: 118 VRAVLDFGAGDILEVHVPGRKTTLMLPFTRAVVPTVDLTAGRIIADP 164
>gi|114328348|ref|YP_745505.1| 16S rRNA processing protein rimM [Granulibacter bethesdensis
CGDNIH1]
gi|122326694|sp|Q0BRH0|RIMM_GRABC RecName: Full=Ribosome maturation factor rimM
gi|114316522|gb|ABI62582.1| 16S rRNA processing protein rimM [Granulibacter bethesdensis
CGDNIH1]
Length = 186
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
L+L+ IG HG+ G V++ SY +P DL Y L +D +I+ +R + T G
Sbjct: 5 LILLGVIGRPHGVRGLVHVVSYTADPDDLTAYGLL-HDEAGRQIMLDWRADGLAGITIDG 63
Query: 67 I--DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVCGVY 123
+ + +A L + +L+ R E +ED+F+ DL +E GQV V+
Sbjct: 64 VPVQDRSAAERLTNTRLFINRDALPPVE-DEDDFYLVDLIGLEARLVADETLLGQVAQVH 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++GAG+ LEI + + L+PFT+ AV V++ ++LIDP
Sbjct: 123 DYGAGASLEITRSGGASLLVPFTRAAVPVVDIAAGRVLIDP 163
>gi|254417860|ref|ZP_05031584.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
gi|196184037|gb|EDX79013.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
Length = 175
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M +L+L+ IG G+ GEV + ++ +P+ L Y L D L R +K
Sbjct: 1 MTTDSRLILVGQIGGGFGVRGEVRVTAFTADPLALTAYGPLLRADGTVALTLSATRPDKS 60
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I A LR LKLY R F E +EDEF+ DL +E D G+ G
Sbjct: 61 GVVGRAKEIATKEQADALRGLKLYVPRDRFP--EPDEDEFYLADLLGVEVRDTAGEVMGT 118
Query: 119 VCGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V V NFGA +LEI T T+ +PFTK A E++L + +L P
Sbjct: 119 VKSVQNFGADDMLEIAPATGGPTWYLPFTKAATPELHLADGWLLAVP 165
>gi|114771309|ref|ZP_01448729.1| 16S rRNA processing protein RimM [alpha proteobacterium HTCC2255]
gi|114548234|gb|EAU51121.1| 16S rRNA processing protein RimM [alpha proteobacterium HTCC2255]
Length = 189
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M +++ + A +G G++GE+ + S+ ++P + Y L +++ LK+ K
Sbjct: 1 MTIPERVCVGAVVGA-FGIHGEIRVKSFCSDPESIAEYDQLTDETGKKVFKLKIINPIKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F A SG+ A EL+ + LY R + + L++DEF+ +DL +E FD G G+
Sbjct: 60 GFSARISGVKYRDQAEELKGIALYVCRSEMPN--LDDDEFYYSDLINLEVFDTGGIKIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTF-LIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V V + GAG LEIK +K L+PFTK +V ++L+ +I+IDP N + P
Sbjct: 118 VISVNDHGAGDFLEIKAYGQKNLALLPFTKKSVPTIDLKLGRIIIDPPHGVFENNEPEEP 177
>gi|119386589|ref|YP_917644.1| 16S rRNA processing protein RimM [Paracoccus denitrificans PD1222]
gi|171704477|sp|A1B8V4|RIMM_PARDP RecName: Full=Ribosome maturation factor rimM
gi|119377184|gb|ABL71948.1| 16S rRNA processing protein RimM [Paracoccus denitrificans PD1222]
Length = 167
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSND-NRELRILKMYRKNKRFIATFS 65
V + I G+ GEV + S+ + P D+ Y LY+ D NR I A S
Sbjct: 5 VCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLGARLS 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G++ A L+ + L+A R K L +DEF++ DL + +D G G+V +Y+
Sbjct: 65 GVETREQAEALKGVTLWADRD--KLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIYDH 122
Query: 126 GAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG ILEI + L+PFT+ V V+L +I+ DP
Sbjct: 123 GAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVADP 162
>gi|241761943|ref|ZP_04760028.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373623|gb|EER63195.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 163
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+L+ +A + HG+ GEV + + + Y ++S + L + K+ K ++A F
Sbjct: 6 DRLITLAVVTGAHGITGEVRLKPFTEDAAQFKAYGIFSANGTPLTLKKLRPDPKGWVARF 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
S I + + A LR L R+ D L DE++ DL + D G+ G V N
Sbjct: 66 SEITDRNQAEALRGTALTVPRKALPD--LPADEYYYIDLIGLPCVDSSGQSIGVSVAVEN 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+GAG ILEI+ EK F++P + V++ ++ ++I
Sbjct: 124 YGAGDILEIEKADEKRFMVPIAQ----AVDVHDDHLVI 157
>gi|56551973|ref|YP_162812.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260752482|ref|YP_003225375.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|67461300|sp|Q5NNK9|RIMM_ZYMMO RecName: Full=Ribosome maturation factor rimM
gi|56543547|gb|AAV89701.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258551845|gb|ACV74791.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 163
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+L+ +A + HG+ GEV + + + Y ++S + L + K+ K ++A F
Sbjct: 6 DRLITLAVVTGAHGITGEVRLKPFTEDAAQFKAYGIFSANGTPLTLKKLRPDPKGWVARF 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
S I + + A LR L R+ D L DE++ DL + D G+ G V N
Sbjct: 66 SEITDRNQAEALRGTALTVPRKALPD--LPADEYYYIDLIGLPCVDPSGQSIGVSVAVEN 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+GAG ILEI+ EK F++P + V++ ++ ++I
Sbjct: 124 YGAGDILEIEKADEKRFMVPIAQ----AVDVHDDHLVI 157
>gi|197103581|ref|YP_002128958.1| 16S rRNA processing protein RimM [Phenylobacterium zucineum HLK1]
gi|196477001|gb|ACG76529.1| 16S rRNA processing protein RimM [Phenylobacterium zucineum HLK1]
Length = 167
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIA 62
D L+L+ + G+ GEV + SY P L Y L D R L R K +
Sbjct: 3 DSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGLVV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
++ A LR L LY R E EEDEF+ TDL + QG+ G+V V
Sbjct: 63 RAQEVETREQAEALRGLNLYIPRDILP--EPEEDEFYVTDLIGLAVETPQGEPLGRVKNV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+FGAG +LEI+ + +PFTK AV EV L E K++
Sbjct: 121 QDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVV 159
>gi|90421747|ref|YP_530117.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
BisB18]
gi|109893042|sp|Q21CT8|RIMM_RHOPB RecName: Full=Ribosome maturation factor rimM
gi|90103761|gb|ABD85798.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris
BisB18]
Length = 176
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIATFS 65
+ +A IG HG+ G V + + +P+ + Y L + D + ++ R+ K +AT
Sbjct: 6 ICVARIGAPHGVRGAVKLWPFTADPLAVLDYGPLSTKDGKRSFEVETAREAKGHLVATLQ 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L ++LY R E E E+++ DL + D G G+V ++NF
Sbjct: 66 GVVSREDAERLNGVELYIDRAQLPPPE--EGEYYHADLIGLAAVDAAGAPIGKVLAIHNF 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GAG I+EI T L+PFT V V++ +++I+
Sbjct: 124 GAGDIIEIAPPSGPTLLLPFTNAVVPTVDIASGRVVIE 161
>gi|126734921|ref|ZP_01750667.1| 16S rRNA processing protein RimM [Roseobacter sp. CCS2]
gi|126715476|gb|EBA12341.1| 16S rRNA processing protein RimM [Roseobacter sp. CCS2]
Length = 171
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNREL-RILKMYRKNKRFIATFS 65
V++ IG G+ GEV + SY +P + Y LY+ D R +I+ + F A
Sbjct: 5 VIVGAIGGAFGVQGEVRLKSYCADPQAIADYTPLYTEDGRAFAQIVLTGQLKNGFTARID 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A LR++ LYA R L +DE++ DL + D G G V V +
Sbjct: 65 GVITKEDADALRNVNLYAPRDIMP--SLPDDEYYYADLIGLTVVDTGGATLGTVKNVMDH 122
Query: 126 GAGSILE-IKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG +LE I T L+PFT+ AV V+L +I+ DP
Sbjct: 123 GAGDLLEIIVPGASDTILLPFTQAAVPTVDLTAKRIVADP 162
>gi|260428907|ref|ZP_05782884.1| 16S rRNA processing protein RimM [Citreicella sp. SE45]
gi|260419530|gb|EEX12783.1| 16S rRNA processing protein RimM [Citreicella sp. SE45]
Length = 168
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+ + TI G++GEV + S+ +P + Y +N++ +L+I + + F A
Sbjct: 5 ICVGTIAGAFGVHGEVRLKSFTADPEAIADYAPLTNEDGTRSFDLQITRAVKGG--FAAR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SG+ + A LR LY R L +DEF++TDL + +D G G+V V
Sbjct: 63 LSGVRSKEEADALRGTGLYVPRDRLP--ALPDDEFYHTDLIGLAVYDTGGVELGRVKAVL 120
Query: 124 NFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
N GA +LE++ KT L+PFT+ V V+L +I+ DP
Sbjct: 121 NHGAADLLELQLPGGSKTVLLPFTRAVVPTVDLASGRIVADP 162
>gi|254487378|ref|ZP_05100583.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
gi|214044247|gb|EEB84885.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
Length = 194
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIATFS 65
+ + I ++G+ GE+ I SY P D+ Y L S D L + R K F+A +
Sbjct: 18 IPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALALVRPIKNGFVARIT 77
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ + A LR LYA R L +DEF++ DL +E +D G G+V V N
Sbjct: 78 DVTSKEEADALRGTLLYADRAQLP--SLPDDEFYHADLLGLEVYDTGGTLIGKVKTVQNH 135
Query: 126 GAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA +LE + T +PFTK AV V+L +I+ DP L +T
Sbjct: 136 GADDLLETQLAGTSATVFLPFTKAAVPTVDLASGRIIADPPDGILPDT 183
>gi|154246453|ref|YP_001417411.1| 16S rRNA-processing protein RimM [Xanthobacter autotrophicus Py2]
gi|238686722|sp|A7IIB1|RIMM_XANP2 RecName: Full=Ribosome maturation factor rimM
gi|154160538|gb|ABS67754.1| 16S rRNA processing protein RimM [Xanthobacter autotrophicus Py2]
Length = 185
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+L+A IG HG+ GEV + + +P + Y + + + RI + F+A
Sbjct: 5 ILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFVARIE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI + +A L +L L+ R+ + ++D F++ DL ++ D G G+V + +F
Sbjct: 65 GIADRTAAEALTNLDLFVPREALPPPD-DDDTFYHADLIGLDVVDEAGVVIGKVVALQDF 123
Query: 126 GAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILI 162
GAG ILE T+ KT ++PF+K AV V++ ++++
Sbjct: 124 GAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGRRVVV 164
>gi|91974988|ref|YP_567647.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris BisB5]
gi|123749437|sp|Q13DU3|RIMM_RHOPS RecName: Full=Ribosome maturation factor rimM
gi|91681444|gb|ABE37746.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris BisB5]
Length = 176
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 4/159 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G + + S+ P+ + Y L + D R I + T
Sbjct: 5 LICIARIGAPHGVRGAMRLWSFTAEPLAVMDYGPLATKDGARSFEIATARPAKDHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L L+LY R E + E+++ DL + G+ G+V ++N
Sbjct: 65 KGVATREEAERLNGLELYVPRDRLPPTE--DGEYYHADLIGLPAITPAGEPLGRVLAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+EI T L+PFT V V+L ++I+
Sbjct: 123 FGAGDIIEIAPPQGATLLLPFTNAVVPTVDLTAGHVVIE 161
>gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
gi|159177984|gb|EDP62531.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
Length = 179
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFI 61
+D++ L A G HG+ G+V + + NP D+ Y ++ +R ++ R I
Sbjct: 2 VDRVCLGAVAGA-HGVRGQVKVKPFTENPDDVAAYGPVEDERGDRRFKLSVTGRHKDTVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + ++A LR +LY R E EE F++ DL + G+ G+V
Sbjct: 61 VRIDGVSDRNAAEALRGTRLYVARAVLP--EPEEGAFYHADLIGLSVVSVGGETLGRVTS 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V++FGAG ++E + ++PFT V EV+L ++++DP
Sbjct: 119 VHDFGAGDLVEYVDASGGQHMLPFTLAMVPEVDLAGGRMVVDP 161
>gi|126732673|ref|ZP_01748469.1| 16S rRNA processing protein RimM [Sagittula stellata E-37]
gi|126706803|gb|EBA05873.1| 16S rRNA processing protein RimM [Sagittula stellata E-37]
Length = 167
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIA 62
+D+ + + I G+ GE + S+ +P + Y L + D R + F
Sbjct: 1 MDQTICVGAIAGAFGVQGEARLKSFTADPRAIEDYAPLTTEDGRSFGLNITREIANGFAV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ A L+ ++LYA R L +DEF++TDL + FD G G+V V
Sbjct: 61 RLTGVATKEEADALKGVRLYAPRDRLP--SLPDDEFYHTDLIGLSVFDTGGVELGKVKAV 118
Query: 123 YNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
N GA +LE+ T + T L+PFT+ V V+L +I+ DP
Sbjct: 119 LNHGATDLLELHATGKSGTVLLPFTRACVPTVDLTAGRIVADP 161
>gi|83855064|ref|ZP_00948594.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83941588|ref|ZP_00954050.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
gi|83842907|gb|EAP82074.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83847408|gb|EAP85283.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
Length = 173
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIA 62
DK+ + A G +G+ GE+ I SY P D+ Y L S D L + R K F+A
Sbjct: 3 DKISVGAISGA-YGVRGELRIKSYCAVPEDIESYSPLSSEDGTRSFNLALVRPVKNGFVA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + + A LR L+A+R L +DEF++TDL +E +D G G+V V
Sbjct: 62 RITDVTSKEEADALRGTVLFAQRDQLP--SLPDDEFYHTDLIGLEVYDTGGTLIGKVKTV 119
Query: 123 YNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
N GA +LE + +T +PFTK AV V+L +I+ DP
Sbjct: 120 QNHGADDLLETQLAGSAQTVFLPFTKAAVPTVDLATGRIIADP 162
>gi|315497157|ref|YP_004085961.1| 16S rRNA processing protein rimm [Asticcacaulis excentricus CB 48]
gi|315415169|gb|ADU11810.1| 16S rRNA processing protein RimM [Asticcacaulis excentricus CB 48]
Length = 180
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFI 61
+ +LV +A + + G+ GE + S+ ++P+ + Y LY+ ++ R +K +
Sbjct: 1 MTELVFVAQVAASFGVRGEFKLISHMDDPLSVLEYNPLYNPRGEPALVITAARVHKGALV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI + A L+ LKLY +R+D + E +ED+F+ TDL +E G G++ G
Sbjct: 61 VKAEGISDKDKADALKGLKLYVRREDLPEVE-DEDDFYITDLIGLEVRSTDGSVIGRLKG 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V +FGAG +L+I+ ++ + FT+ V EVN+ ++I P + N ++ Q
Sbjct: 120 VEDFGAGDLLDIQPKGGASYYLMFTRENVPEVNIGAGYVVISPPQEVVVNEPLETDQ 176
>gi|115522357|ref|YP_779268.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
BisA53]
gi|122297959|sp|Q07UU6|RIMM_RHOP5 RecName: Full=Ribosome maturation factor rimM
gi|115516304|gb|ABJ04288.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris
BisA53]
Length = 176
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 4/160 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIAT 63
K + +A IG HG+ G + + + +P+ + Y + + +R + +AT
Sbjct: 4 KRICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGSRRFEVETAREAKDHLVAT 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + A L ++LY R E +E E+++ DL + G+ G+V ++
Sbjct: 64 LKGVASRDDAVRLNGIELYIDRDQLP--ETDEGEYYHADLIGLAAVTAAGEPLGKVAAIH 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
NFGAG I+EI T L+PFT V V+L+ +++I+
Sbjct: 122 NFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLEGGRVVIE 161
>gi|302381701|ref|YP_003817524.1| 16S rRNA processing protein RimM [Brevundimonas subvibrioides ATCC
15264]
gi|302192329|gb|ADK99900.1| 16S rRNA processing protein RimM [Brevundimonas subvibrioides ATCC
15264]
Length = 174
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIAT 63
KL+L+ + G+ GEV I +Y +P+ L Y +L ++ + L +L +
Sbjct: 5 KLILVGHVAGGFGVKGEVKITAYTADPLALTAYGPLLRADGSHALTVLSARPTKDGIVGR 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ A LR+LKL+ R F E +EDEF+ DL +E D G G V V
Sbjct: 65 VKEVATKEEADALRNLKLHVPRDRFP--EADEDEFYLADLIGVEARDPDGVVLGTVKAVQ 122
Query: 124 NFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKIL 161
NFGA +LEI T+ +PFT+ V +++L + +L
Sbjct: 123 NFGADDMLEIAPAAGGPTWFLPFTRACVPDLHLSDGWLL 161
>gi|304392572|ref|ZP_07374512.1| 16S rRNA processing protein RimM [Ahrensia sp. R2A130]
gi|303295202|gb|EFL89562.1| 16S rRNA processing protein RimM [Ahrensia sp. R2A130]
Length = 183
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M L+L+A IG G+ GE+ + ++ +NP L+ Y L + D R ++ +M
Sbjct: 1 MTDPSSLILLAQIGRPQGIKGELRVKAFTDNPEALDDYGALRTADGRRFKVKRMRPGKGV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G++ A +L+ +R E +EDEF+ TDL M D +G G V
Sbjct: 61 LIVKFEGVNTREEAEAENGTELFIERHRLPPVE-DEDEFYVTDLIGMVVVDGEGLQIGTV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+FGAGS+LEI + ++ FT V +V+L ++ +
Sbjct: 120 KDAPDFGAGSVLEITGGA-GSVMVDFTHANVPDVDLAAGRVTV 161
>gi|160933332|ref|ZP_02080720.1| hypothetical protein CLOLEP_02177 [Clostridium leptum DSM 753]
gi|156867209|gb|EDO60581.1| hypothetical protein CLOLEP_02177 [Clostridium leptum DSM 753]
Length = 171
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFSGIDNI 70
I T GL GE+ +D + ++ L R + + +EL+++ + + I G+D+I
Sbjct: 11 ITGTQGLRGEIRVDPWCDSAEALCRLKRLYFEEGKQELKVVSARTQKRMAILKLEGVDSI 70
Query: 71 HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCGVYNFGAGS 129
A LR+ LYA RQDFK LE +F DL ++ D G+ +G V V GA
Sbjct: 71 EQADLLRNRVLYASRQDFK---LEPGRYFIQDLLGVKAVDADSGRDYGAVTDVLKTGAND 127
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ EI K +L+P V+E+ L+E + I PI
Sbjct: 128 VYEITGDDGKAYLLPAIPMTVIEIRLEEGLMRIRPI 163
>gi|170741841|ref|YP_001770496.1| 16S rRNA-processing protein RimM [Methylobacterium sp. 4-46]
gi|168196115|gb|ACA18062.1| 16S rRNA processing protein RimM [Methylobacterium sp. 4-46]
Length = 176
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNR--ELRILKMYRKNKR-FIATF 64
++ G HGL GEV + SY P+ + Y L ++D R EL L+ +A
Sbjct: 1 MLGEFGRAHGLQGEVRLKSYTAEPMAIGGYGPLLASDGRVVELTALRPAAGTPDILVARV 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+G+ +A L L L R E +EDEFF DL + D G G + V N
Sbjct: 61 AGVAGRSAAEGLNRLTLSVPRDRLGAPE-DEDEFFTADLVGLAAVDAAGTRLGTIRAVPN 119
Query: 125 FGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+G G +LEI+ + L+PFT+ V +V + ++ I P
Sbjct: 120 YGGGDLLEIEPEGGGRPALLPFTRLFVPKVEIAAGRVTIAP 160
>gi|86137215|ref|ZP_01055793.1| 16S rRNA processing protein RimM [Roseobacter sp. MED193]
gi|85826539|gb|EAQ46736.1| 16S rRNA processing protein RimM [Roseobacter sp. MED193]
Length = 171
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNKR-FIATF 64
L+ + I ++G+ GEV + S+ P ++ Y +N D + L + R K F
Sbjct: 8 LICVGAIAGSYGVRGEVRLKSFCAQPEEIETYSPLTNEDGSQSFSLTLGRAVKGGFTGRI 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
S ++ A L+ ++L+ R K L DE+++ DL +E FD G G V V N
Sbjct: 68 STVETKEQADALKGIRLFTTRD--KLPTLPSDEYYHADLIGVEVFDTGGALLGTVKSVQN 125
Query: 125 FGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LE+ ++ T +PFT AV V+L++ +I+ DP
Sbjct: 126 HGASDLLELTGAGLKGTVFLPFTLAAVPTVDLEQGRIIADP 166
>gi|167648844|ref|YP_001686507.1| 16S rRNA-processing protein RimM [Caulobacter sp. K31]
gi|167351274|gb|ABZ74009.1| 16S rRNA processing protein RimM [Caulobacter sp. K31]
Length = 200
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIATF 64
L+L+ + G+ GE+ I +Y +P+ L R+ L D ++ R K +A
Sbjct: 17 LILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSPALTVQTARVVKDGVVARC 76
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGVY 123
+G+D +A LR L+LY R E +EDE++ DL + + G++ V
Sbjct: 77 AGVDTKEAADALRGLRLYVPRAALP--EPDEDEYYLADLIGLPVRHVATDELLGKIKSVQ 134
Query: 124 NFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIA 166
NFGA +LEI + +T+ +PFT+ AV EV + + +L DP A
Sbjct: 135 NFGADDLLEIDPALGGQTWYLPFTRAAVPEVKIADGVVLADPPA 178
>gi|209573746|sp|B0T563|RIMM_CAUSK RecName: Full=Ribosome maturation factor rimM
Length = 192
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIATF 64
L+L+ + G+ GE+ I +Y +P+ L R+ L D ++ R K +A
Sbjct: 9 LILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSPALTVQTARVVKDGVVARC 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGVY 123
+G+D +A LR L+LY R E +EDE++ DL + + G++ V
Sbjct: 69 AGVDTKEAADALRGLRLYVPRAALP--EPDEDEYYLADLIGLPVRHVATDELLGKIKSVQ 126
Query: 124 NFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIA 166
NFGA +LEI + +T+ +PFT+ AV EV + + +L DP A
Sbjct: 127 NFGADDLLEIDPALGGQTWYLPFTRAAVPEVKIADGVVLADPPA 170
>gi|110678632|ref|YP_681639.1| 16S rRNA-processing protein RimM [Roseobacter denitrificans OCh
114]
gi|123172765|sp|Q16AP0|RIMM_ROSDO RecName: Full=Ribosome maturation factor rimM
gi|109454748|gb|ABG30953.1| 16S rRNA processing protein RimM [Roseobacter denitrificans OCh
114]
Length = 168
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIA 62
D+ + + I +G+ GE+ I S+ D+ Y L S D + L + R K F+A
Sbjct: 3 DEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGFVA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + + A L+ ++L+A R L +DE++ TDL ++ D G+ G V V
Sbjct: 63 RIAEVSSKEEADALKGVQLFALRDQLP--SLPDDEYYYTDLIGLQVLDTGGELLGSVKTV 120
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ GAG ILE++ +T L+PFT+ V V+L K++ DP
Sbjct: 121 ADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLIADP 163
>gi|163733915|ref|ZP_02141357.1| 16S rRNA processing protein RimM [Roseobacter litoralis Och 149]
gi|161393026|gb|EDQ17353.1| 16S rRNA processing protein RimM [Roseobacter litoralis Och 149]
Length = 173
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIA 62
D+ + + I +G+ GE+ I S+ D+ Y L S D + L + R K F+A
Sbjct: 8 DEKICVGAIAGAYGVRGELRIKSFCATAEDIETYAPLTSEDGQRHFHLALVRPIKGGFVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + A L+ ++L+A R L +DE++ TDL ++ D G+ G V V
Sbjct: 68 RIAEVTTKEEADALKGVQLFALRDQLP--SLPDDEYYYTDLIGLQVLDTGGEILGSVKTV 125
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ GAG ILE++ +T L+PFT + V+L+ KI+ DP
Sbjct: 126 ADHGAGDILEVQRVGSSETVLLPFTLAVIPTVDLRAGKIIADP 168
>gi|42521077|ref|NP_966992.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58696689|ref|ZP_00372239.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila simulans]
gi|225630985|ref|YP_002727776.1| 16S rRNA processing protein RimM [Wolbachia sp. wRi]
gi|225677106|ref|ZP_03788108.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|59798785|sp|Q73FP4|RIMM_WOLPM RecName: Full=Ribosome maturation factor rimM
gi|254797772|sp|C0R4Z3|RIMM_WOLWR RecName: Full=Ribosome maturation factor rimM
gi|42410818|gb|AAS14926.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58537131|gb|EAL60241.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila simulans]
gi|225590865|gb|EEH12090.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225592966|gb|ACN95985.1| 16S rRNA processing protein RimM [Wolbachia sp. wRi]
Length = 168
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 92/162 (56%), Gaps = 5/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
D LV + I + HG+ G V + ++ P +++ Y ++ ++N ++ + + N IA
Sbjct: 3 DNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDN-LVIA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T SG+++ + A LR+ KLY +R E +EDEF+ +DL +ME + + +G V V
Sbjct: 62 TISGVNSRNEAELLRNKKLYIERSKLP-ELNDEDEFYQSDLVDMEVRLKSNELYGYVKSV 120
Query: 123 YNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
YNFG+G ILEI + +K ++ FTK +N++ I+++
Sbjct: 121 YNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIVLN 162
>gi|126698852|ref|YP_001087749.1| putative 16S rRNA processing protein [Clostridium difficile 630]
gi|254974800|ref|ZP_05271272.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-66c26]
gi|255092188|ref|ZP_05321666.1| putative 16S rRNA processing protein [Clostridium difficile CIP
107932]
gi|255306212|ref|ZP_05350384.1| putative 16S rRNA processing protein [Clostridium difficile ATCC
43255]
gi|255313927|ref|ZP_05355510.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-76w55]
gi|255516606|ref|ZP_05384282.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-97b34]
gi|255649706|ref|ZP_05396608.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-37x79]
gi|260682862|ref|YP_003214147.1| putative 16S rRNA processing protein [Clostridium difficile CD196]
gi|260686460|ref|YP_003217593.1| putative 16S rRNA processing protein [Clostridium difficile R20291]
gi|306519819|ref|ZP_07406166.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-32g58]
gi|123174578|sp|Q18BB6|RIMM_CLOD6 RecName: Full=Ribosome maturation factor rimM
gi|115250289|emb|CAJ68111.1| 16S rRNA processing protein RimM [Clostridium difficile]
gi|260209025|emb|CBA62124.1| putative 16S rRNA processing protein [Clostridium difficile CD196]
gi|260212476|emb|CBE03385.1| putative 16S rRNA processing protein [Clostridium difficile R20291]
Length = 171
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ +L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D + ELEE EFF D+ ME GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVSREDSR--ELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|255100272|ref|ZP_05329249.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-63q42]
Length = 171
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ +L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D + ELEE EFF D+ ME GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVAREDSR--ELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|52859961|ref|ZP_00208181.2| COG0806: RimM protein, required for 16S rRNA processing
[Magnetospirillum magnetotacticum MS-1]
Length = 168
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATFSGIDNIHSA 73
HG+ G V I S+ +P D+ Y N+ + LK+ + K IAT G+ + +A
Sbjct: 5 VHGVRGAVRIKSFTEDPADIGFYSPVENEAGGTKFRLKVTGEVKGLVIATLEGVCDRDAA 64
Query: 74 SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI 133
L+ +L+ R+ L EDEF TDL + + GK G V V ++GAG +L+I
Sbjct: 65 EALKGTELWVARERLP--RLAEDEFLYTDLIGLVAYGVDGKRLGIVKAVADYGAGDVLDI 122
Query: 134 KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
K + ++PFTK +V EV++ ++++ P
Sbjct: 123 KLEPKGDMMVPFTKDSVPEVDIAGARLVVIP 153
>gi|58698384|ref|ZP_00373297.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535097|gb|EAL59183.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 168
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 92/162 (56%), Gaps = 5/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
D LV + I + HG+ G V + ++ P +++ Y ++ ++N ++ + + N IA
Sbjct: 3 DNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDN-LVIA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T SG+++ + A LR+ KLY +R E +EDEF+ +DL +ME + + +G V V
Sbjct: 62 TISGVNSRNEAELLRNKKLYIERSKLP-ELNDEDEFYQSDLVDMEVRLKSNELYGYVKSV 120
Query: 123 YNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
YNFG+G ILE+ + +K ++ FTK +N++ I+++
Sbjct: 121 YNFGSGDILEVLVISTKKRIMLSFTKEIFPHINIKGRYIVLN 162
>gi|260574844|ref|ZP_05842846.1| 16S rRNA processing protein RimM [Rhodobacter sp. SW2]
gi|259022849|gb|EEW26143.1| 16S rRNA processing protein RimM [Rhodobacter sp. SW2]
Length = 167
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 5/159 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI-ATFS 65
+ + I + G+ GEV + S+ ++P + Y L++ D +K+ R + A S
Sbjct: 5 ICVGAIAGSFGVKGEVRLKSFCSDPEAIAGYGPLFTEDGTRQFSVKLTRPVAGGLGARLS 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A LR LY + +L +DEF++ DL ME D G G+V V+N
Sbjct: 65 GVATKEEADALRGTSLYVDKTRLP--KLPDDEFYHADLIGMEVRDTGGVLLGRVQAVHNH 122
Query: 126 GAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILID 163
GAG +LEI +++ L+PFT V V+L +I++D
Sbjct: 123 GAGDLLEIAGAGLKEPILLPFTLAVVPTVDLVAGRIVVD 161
>gi|90421130|ref|ZP_01229032.1| 16S rRNA processing protein rimM [Aurantimonas manganoxydans
SI85-9A1]
gi|90334622|gb|EAS48402.1| 16S rRNA processing protein rimM [Aurantimonas manganoxydans
SI85-9A1]
Length = 194
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRF 60
KL+ VL+ +G G+ GE + S+ +P DL Y ++ ++ NR + KN
Sbjct: 6 KLENPVLLGVVGGAQGIKGECRVRSFTADPTDLGAYGPLVDASGNRYTVLSARVAKNV-V 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F + + + A L KL+ R E ++DEF+ DL G G V
Sbjct: 65 VVRFKEVADRNHAERLNGRKLFVDRSVLP-EPADDDEFYLEDLVGYAVETVAGDAVGTVI 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
++F AG I+EI+ T +T +IPF++ A+ ++ + ++++P AGL
Sbjct: 124 AFHDFNAGDIVEIRPTKGQTLMIPFSEAAIPVIDAERRLMVVEPGPAGL 172
>gi|255655266|ref|ZP_05400675.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-23m63]
gi|296451251|ref|ZP_06892991.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296880397|ref|ZP_06904360.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
gi|296259857|gb|EFH06712.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296428638|gb|EFH14522.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
Length = 171
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ +L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLSVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D + ELEE EFF D+ +E GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVSREDSR--ELEEGEFFIADMIGIEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|15604216|ref|NP_220731.1| 16S rRNA-processing protein RimM [Rickettsia prowazekii str. Madrid
E]
gi|14423906|sp|Q9ZDI0|RIMM_RICPR RecName: Full=Ribosome maturation factor rimM
gi|3860908|emb|CAA14808.1| unknown [Rickettsia prowazekii]
gi|292571956|gb|ADE29871.1| 16S rRNA processing protein RimM [Rickettsia prowazekii Rp22]
Length = 165
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L L+L+ I + HG+ G V + S+ + L + +RI K+ +N +
Sbjct: 1 MNSLKNLILIGVIKSCHGIQGHVILKSFTEPSTKILERTLVNESGANIRI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R +LEEDEF+ DL ++ D+ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRTSLP--KLEEDEFYIADLNHLQILDQSNKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFLDKTTELLPFNK 146
>gi|34580601|ref|ZP_00142081.1| 16S rRNA processing protein RimM [Rickettsia sibirica 246]
gi|28261986|gb|EAA25490.1| 16S rRNA processing protein RimM [Rickettsia sibirica 246]
Length = 165
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+KL+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLEKLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFSDQTTELLPFNK 146
>gi|51473542|ref|YP_067299.1| 16S rRNA-processing protein [Rickettsia typhi str. Wilmington]
gi|59798673|sp|Q68X25|RIMM_RICTY RecName: Full=Ribosome maturation factor rimM
gi|51459854|gb|AAU03817.1| 16S rRNA processing protein RimM [Rickettsia typhi str. Wilmington]
Length = 165
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L + ++RI K+ +N +
Sbjct: 1 MNSLENLILIGIIKSCHGIQGHVILRSFTEPATKILERNLVNESGADIRI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + D+ K G+
Sbjct: 60 ELICTFNDITTRNEAENLKGYKIFCLRTSLP--ELEEDEFYIADLNHLRILDQYNKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFLDKTTKLLPFNK 146
>gi|94495533|ref|ZP_01302113.1| 16S rRNA processing protein [Sphingomonas sp. SKA58]
gi|94424921|gb|EAT09942.1| 16S rRNA processing protein [Sphingomonas sp. SKA58]
Length = 159
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A + HG+ GEV + + + P L Y + R L + + +A F
Sbjct: 3 DKPVTLAVVTGAHGVTGEVRLKLFGDGPDSLKGYGAFMAAGRTLTLKSVRAGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I + +A LR +L R L E E+++ DL ++ G+ G V V N
Sbjct: 63 AEIGDRGAAEALRGTELTVPRSALP--PLGEGEYYHVDLIDLPCASSTGEALGTVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+E++ K F++P V L + +ID
Sbjct: 121 FGAGDIVEVQRASGKRFMVPMHA-----VTLGDGGAVID 154
>gi|255262386|ref|ZP_05341728.1| 16S rRNA processing protein RimM [Thalassiobium sp. R2A62]
gi|255104721|gb|EET47395.1| 16S rRNA processing protein RimM [Thalassiobium sp. R2A62]
Length = 168
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR-FIATFS 65
+ + T+G + G+ GEV + S+ +P D+ Y L + D L + + K F A
Sbjct: 5 ITIGTLGGSFGVKGEVRLKSFCADPQDIEAYSPLTTPDGVAFDGLTLTGRLKNGFSARLL 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G++ A LR +L R + L +DE++ TDL +E D G G V V N
Sbjct: 65 GVETKEQADALRGTELQVDRDAMPN--LPDDEYYYTDLMGLEVRDTGGTVLGTVKSVQNH 122
Query: 126 GAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +LE+ +T +T L+PFT +V V+L +I+ DP
Sbjct: 123 GATDLLEVLPSTGGETILLPFTMTSVPTVDLTAGRIIADP 162
>gi|170750014|ref|YP_001756274.1| 16S rRNA processing protein RimM [Methylobacterium radiotolerans
JCM 2831]
gi|209573582|sp|B1LVU1|RIMM_METRJ RecName: Full=Ribosome maturation factor rimM
gi|170656536|gb|ACB25591.1| 16S rRNA processing protein RimM [Methylobacterium radiotolerans
JCM 2831]
Length = 231
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL GEV + SY +P + Y L ++D R L + + I
Sbjct: 52 LVLLGEFGRAHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDMLI 111
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ +A L + L+ R E ++DE + DL D G G +
Sbjct: 112 ARVKGVSGRSAAEALNRVALFVPRDRLAAPE-DDDEVYAADLIGAAAVDEAGTLVGTIVA 170
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILI 162
V N+G G +LE++ T L+PFTK V +++ + ++ +
Sbjct: 171 VPNYGGGDLLELRPPNGGATALLPFTKAFVPVLDVAQRRVTV 212
>gi|87199427|ref|YP_496684.1| 16S rRNA processing protein RimM [Novosphingobium aromaticivorans
DSM 12444]
gi|109893028|sp|Q2G8H3|RIMM_NOVAD RecName: Full=Ribosome maturation factor rimM
gi|87135108|gb|ABD25850.1| 16S rRNA processing protein RimM [Novosphingobium aromaticivorans
DSM 12444]
Length = 166
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKR-FI 61
D+ V +A I HG+ GEV + + L RY + S D L ++K+ K I
Sbjct: 3 DRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGGAI 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F+ + + +A +LR L +R + L E E+++ DL + +G+ G+
Sbjct: 63 ARFAEVPDRTAAEKLRGTALTVRRSELPS--LPEGEYYHADLIGLPAVSTEGEMLGECIA 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V NFGAG ++EI+ K F++P AV E + +I+I+
Sbjct: 121 VENFGAGDVIEIRKADGKKFMVPMKTEAVPE--WTDERIVIE 160
>gi|148261143|ref|YP_001235270.1| 16S rRNA processing protein RimM [Acidiphilium cryptum JF-5]
gi|326404544|ref|YP_004284626.1| ribosome maturation factor RimM [Acidiphilium multivorum AIU301]
gi|172047775|sp|A5G0G9|RIMM_ACICJ RecName: Full=Ribosome maturation factor rimM
gi|146402824|gb|ABQ31351.1| 16S rRNA processing protein RimM [Acidiphilium cryptum JF-5]
gi|325051406|dbj|BAJ81744.1| ribosome maturation factor RimM [Acidiphilium multivorum AIU301]
Length = 169
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 30/176 (17%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+L+LM IG HG+ G V++ +Y+ +P L L D R R+ + T
Sbjct: 3 DRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPL--RDERGRRVGLAW--------TG 52
Query: 65 SGIDNI--------------HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+GI + +A++L +L+LY +R D E +EDEF+ DL +
Sbjct: 53 AGIARVTIGEGDEAAAIADRDAAAKLTNLRLYVRRADLPPPE-DEDEFYFADLIGLHAVG 111
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK-ILIDPI 165
G G + V++FGAG+ +E+ + L+PFT+ V E++L + +++ P+
Sbjct: 112 PDGAALGTIRAVHDFGAGASIELSDGS----LLPFTRAVVPEIDLPGGRAVVVRPV 163
>gi|288957358|ref|YP_003447699.1| 16S rRNA processing protein [Azospirillum sp. B510]
gi|288909666|dbj|BAI71155.1| 16S rRNA processing protein [Azospirillum sp. B510]
Length = 192
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR----ILKMYRKNKRFIAT 63
+ + +HG+ G V + S+ P D+ Y S++ R + M + N F+A
Sbjct: 5 ICVGQFAGSHGVRGLVKLRSFTAEPADIATYGPLSDEAGARRFTLTLQGMVKDN--FLAK 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + A L ++L+ R E +EDEF++ DL + G +G V +Y
Sbjct: 63 VDGVTSREQAQALAGVRLHVDRDALPATE-DEDEFYHADLIGLRAELADGSLYGTVKAIY 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+FGAG +LE++ ++PF+K V V+++ +I++D
Sbjct: 122 DFGAGDVLEVRTAGGPLEMLPFSKACVPVVDVRGGRIVVD 161
>gi|58584390|ref|YP_197963.1| RimM protein, required for 16S rRNA processing [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|67461242|sp|Q5GTF3|RIMM_WOLTR RecName: Full=Ribosome maturation factor rimM
gi|58418706|gb|AAW70721.1| RimM protein, required for 16S rRNA processing [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 168
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
D LV M I + HG+ G V + + P +++ Y ++ + N ++ + + +N IA
Sbjct: 3 DNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISGSKNYDIDSVSVIGEN-LVIA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T +G+++ + A LR+ KLY +R +E+EF+ +DL ME + +G + +
Sbjct: 62 TINGVNSRNEAEFLRNKKLYVERNKLLKLN-DENEFYQSDLVNMEIRLENDELYGYIKSI 120
Query: 123 YNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILID 163
YNFG+G ILEI + +K ++PFTK VN++E I ++
Sbjct: 121 YNFGSGDILEISVISTKKNIMLPFTKEIFPYVNIKERYITLN 162
>gi|330994000|ref|ZP_08317930.1| Ribosome maturation factor rimM [Gluconacetobacter sp. SXCC-1]
gi|329758946|gb|EGG75460.1| Ribosome maturation factor rimM [Gluconacetobacter sp. SXCC-1]
Length = 183
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI-ATFS 65
VLM +G HG+ G V++ SY P DL Y L + R R+ R A
Sbjct: 6 VLMGVVGRPHGVRGLVHVHSYTAVPEDLATYDGLVDDQGRPWRLSWHGTGIARLHDAAGQ 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYWGQVCGVY 123
ID+ +A +L + KLY R +EDEF+ DL +E + QG + G+V V+
Sbjct: 66 AIDSREAARQLVNRKLYVPRASLPAP--DEDEFYFADLVGLEARE-QGTDRVLGRVGAVH 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++GAG+ LEI N + L+PFT+ V VN++ I I
Sbjct: 123 DYGAGTSLEI-NGAGGSLLLPFTRACVPVVNVRGGWIDI 160
>gi|15892396|ref|NP_360110.1| 16S rRNA-processing protein [Rickettsia conorii str. Malish 7]
gi|20139550|sp|Q92IE7|RIMM_RICCN RecName: Full=Ribosome maturation factor rimM
gi|15619547|gb|AAL03011.1| 16S rRNA processing protein RimM [Rickettsia conorii str. Malish 7]
Length = 165
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFSNQTTELLPFNK 146
>gi|157828347|ref|YP_001494589.1| 16S rRNA-processing protein RimM [Rickettsia rickettsii str.
'Sheila Smith']
gi|166226475|sp|A8GRQ6|RIMM_RICRS RecName: Full=Ribosome maturation factor rimM
gi|157800828|gb|ABV76081.1| 16S rRNA-processing protein [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 165
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFSDQTTELLPFNK 146
>gi|83592522|ref|YP_426274.1| 16S rRNA processing protein RimM [Rhodospirillum rubrum ATCC 11170]
gi|109893043|sp|Q2RV58|RIMM_RHORT RecName: Full=Ribosome maturation factor rimM
gi|83575436|gb|ABC21987.1| 16S rRNA processing protein RimM [Rhodospirillum rubrum ATCC 11170]
Length = 201
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR--FIATFS 65
+L+ I +HG+ G V + S+ + + L Y S++ R R + I
Sbjct: 5 LLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVICQIP 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + +A L+ +L+ R + LEEDE+++ DL + G G V V++F
Sbjct: 65 GVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHSVHDF 124
Query: 126 GAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GAG +LE+ ++ L+PFTK V V+++ +++ DP L++T
Sbjct: 125 GAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRLVADPPLGLLDDT 172
>gi|329114610|ref|ZP_08243369.1| Ribosome maturation factor RimM [Acetobacter pomorum DM001]
gi|326696090|gb|EGE47772.1| Ribosome maturation factor RimM [Acetobacter pomorum DM001]
Length = 180
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 38/173 (21%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
L+LM +G HG+ G V + +YA NP L + +D + +++ ++ G
Sbjct: 5 LILMGVVGKPHGVRGLVRVRAYAENPQTLEQSGALQDD-----------QGRKWFLSWRG 53
Query: 67 IDNIHSASELRDL-----------------KLYAKRQDFKDEELEEDEFFNTDLEEMETF 109
D++ +ELRD +LY R E EE+EF++ DL ME F
Sbjct: 54 ADSV---AELRDANGTPLADRDAAQALVNTRLYVPRTALP--EPEEEEFYHADLIGMEAF 108
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G G+V V+++GAG+ LE+ + L+PFT+ V +V+L++ I +
Sbjct: 109 E-NGLSLGRVVMVHDYGAGASLELSDGS----LVPFTQACVPQVHLEQRTITV 156
>gi|229586614|ref|YP_002845115.1| 16S rRNA-processing protein RimM [Rickettsia africae ESF-5]
gi|228021664|gb|ACP53372.1| 16S rRNA processing protein RimM [Rickettsia africae ESF-5]
Length = 165
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFSDQTTELLPFNK 146
>gi|103488203|ref|YP_617764.1| 16S rRNA processing protein RimM [Sphingopyxis alaskensis RB2256]
gi|123252941|sp|Q1GPJ1|RIMM_SPHAL RecName: Full=Ribosome maturation factor rimM
gi|98978280|gb|ABF54431.1| 16S rRNA processing protein RimM [Sphingopyxis alaskensis RB2256]
Length = 163
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+ V +A I HG+ GEV + + L + ++ +R+L + + N+ +A F
Sbjct: 4 DRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAVAAF 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I + +A LR L R L E+++ DL + +G G V V N
Sbjct: 64 VEIADRSAAEALRGTLLTVPRSALP--PLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVDN 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAV 150
FGAG ILEI+ K F++P T AV
Sbjct: 122 FGAGDILEIEKPDGKRFMVPMTVTAV 147
>gi|157803912|ref|YP_001492461.1| 16S rRNA-processing protein RimM [Rickettsia canadensis str.
McKiel]
gi|166226474|sp|A8EZ93|RIMM_RICCK RecName: Full=Ribosome maturation factor rimM
gi|157785175|gb|ABV73676.1| 16S rRNA-processing protein [Rickettsia canadensis str. McKiel]
Length = 165
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYA--NNPIDLNRYVLYSNDNRELRILKMYRKNK 58
M L+ L+L+ I + HG+ G + + S+ I V S +N ++++ K +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHIILKSFTIPTTKILERNLVNESQENINIKLISQNAKGE 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ KL+ R ELEEDEF+ DL + D+ K G+
Sbjct: 61 -LICTFNDISTRNEAENLKGYKLFCLRASLP--ELEEDEFYIADLNHLTILDQDHKKVGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK--FAVLEVN 154
+ + NFGAG I+EI+ + T L+PF K F V+ N
Sbjct: 118 IKNILNFGAGDIIEIEFLDQTTELLPFNKQFFPVITKN 155
>gi|190571183|ref|YP_001975541.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018585|ref|ZP_03334393.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|209573628|sp|B3CLX1|RIMM_WOLPP RecName: Full=Ribosome maturation factor rimM
gi|190357455|emb|CAQ54889.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995536|gb|EEB56176.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 166
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+ + I + HG+ G V I ++ P ++ Y ++ ++N ++ ++ + N IAT S
Sbjct: 3 ICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVV-SNNLVIATIS 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+++ + A LR+ KLY +R +EDEF+ DL ME + +G V V+NF
Sbjct: 62 GVNSRNEAELLRNKKLYIERNKLPQLN-DEDEFYQNDLVNMEVRLESNELYGYVKSVHNF 120
Query: 126 GAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+G ILEI + +K ++ FTK +N++E I+I+
Sbjct: 121 GSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVIN 159
>gi|239947509|ref|ZP_04699262.1| 16S rRNA processing protein RimM [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921785|gb|EER21809.1| 16S rRNA processing protein RimM [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 165
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTDPATKILERNLVNESGENIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + D+ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLNHLPILDQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGA I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGASDIIEIEFSDQTTELLPFNK 146
>gi|254419610|ref|ZP_05033334.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
gi|196185787|gb|EDX80763.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
Length = 184
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 18 GLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR-FIATFSGIDNIHSASE 75
G+ GEV + ++ +P+ L Y L D L R +K + I A
Sbjct: 22 GVRGEVRVTAFTADPLALTAYGPLLRADGTVALTLSATRPDKSGVVGRAKEIATKEQADA 81
Query: 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI-K 134
LR LKLY R F E +EDEF+ DL +E D G+ G V V NFGA +LEI
Sbjct: 82 LRGLKLYVPRDRFP--EPDEDEFYLADLLGVEVRDTAGEVMGTVKSVQNFGADDMLEIAP 139
Query: 135 NTMEKTFLIPFTKFAVLEVNLQENKIL 161
T T+ +PFTK A E++L + +L
Sbjct: 140 ATGGPTWYLPFTKAATPELHLADGWLL 166
>gi|154251873|ref|YP_001412697.1| 16S rRNA-processing protein RimM [Parvibaculum lavamentivorans
DS-1]
gi|171769584|sp|A7HT07|RIMM_PARL1 RecName: Full=Ribosome maturation factor rimM
gi|154155823|gb|ABS63040.1| 16S rRNA processing protein RimM [Parvibaculum lavamentivorans
DS-1]
Length = 188
Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRF-IA 62
DK V + + HG+ G V + Y P + Y + + D + + K I
Sbjct: 11 DKKVCLGVVTGAHGVRGLVRVKPYTEMPEGVAAYGPVETKDGATSFAISLKGMAKDLVIC 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ A+ LR +LY R+ +E+ ++ DL + G+ +G++ GV
Sbjct: 71 KLEGVDDRDVAAALRGTELYVPRERLPRASGDEEGWYYADLIGLRAVGLDGRDYGRIAGV 130
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
NFGAG +LEI +T L+ FT V EV++ +++IDP A
Sbjct: 131 ENFGAGDLLEIAPAEGGQTVLMGFTDENVPEVDIAGGRVVIDPPAG 176
>gi|165933056|ref|YP_001649845.1| 16S rRNA-processing protein RimM [Rickettsia rickettsii str. Iowa]
gi|189040849|sp|B0BX63|RIMM_RICRO RecName: Full=Ribosome maturation factor rimM
gi|165908143|gb|ABY72439.1| 16S rRNA processing protein [Rickettsia rickettsii str. Iowa]
Length = 165
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIYI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFSDQTTELLPFNK 146
>gi|303257145|ref|ZP_07343159.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
gi|302860636|gb|EFL83713.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
Length = 174
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + +GL G V + + L ++VL + R + + K +A
Sbjct: 12 IVLGALHGAYGLKGWVRVQPFQGTSALLGSKHWQHVLPDGEVRPVELEKAKLHGAGIVAK 71
Query: 64 FSGIDNIHSASELRD-LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID A+ LR + LY R+DF E EE+E++ DL E +++G+ GQV G+
Sbjct: 72 FQGIDTPEDAAALRGAVALY--RKDFP--EAEENEYYWVDLIGCEVVNKEGQSIGQVKGM 127
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G IL +K K LIPF + + EVN++ KI++D
Sbjct: 128 IDNGVHDILNVKRADGKEVLIPFVEDYLAEVNVEAKKIVVD 168
>gi|307294707|ref|ZP_07574549.1| 16S rRNA processing protein RimM [Sphingobium chlorophenolicum L-1]
gi|306879181|gb|EFN10399.1| 16S rRNA processing protein RimM [Sphingobium chlorophenolicum L-1]
Length = 159
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A I HG+ GEV + + L Y + R L + + +A F
Sbjct: 3 DKPVTLAVIIGAHGVAGEVRLKLFGEGAETLKSYGGFDAGGRTLTLRSVRPGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + +A LR +L R L E E+++ DL ++ F +G+ G V V N
Sbjct: 63 AEVGDRTAAEGLRGTELTVPRSALP--ALGEGEYYHADLIDLPCFSSEGEGLGHVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLE 152
FGAG I+E++ K F++P V E
Sbjct: 121 FGAGDIIEVERPNGKRFMVPMHAVTVAE 148
>gi|67458947|ref|YP_246571.1| 16S rRNA-processing protein [Rickettsia felis URRWXCal2]
gi|75536615|sp|Q4UM17|RIMM_RICFE RecName: Full=Ribosome maturation factor rimM
gi|67004480|gb|AAY61406.1| 16S rRNA processing protein RimM [Rickettsia felis URRWXCal2]
Length = 165
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L + ++ I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILERNLVNESGEDIHI-KLISQNTKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ KL+ R +LEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKLFCLRASLP--KLEEDEFYIADLNHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFLDQTTELLPFNK 146
>gi|237746850|ref|ZP_04577330.1| ribosome maturation factor rimM [Oxalobacter formigenes HOxBLS]
gi|229378201|gb|EEO28292.1| ribosome maturation factor rimM [Oxalobacter formigenes HOxBLS]
Length = 179
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
LV + +G +G+ G V I Y+ + + + L S+ +RE+++L+ + +A
Sbjct: 13 LVEVGHVGGAYGIRGWVRIKPYSAGAEALLAVKEWWLDSSGSREVKVLQARWQGADVVAC 72
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+G+ + +A LR + R+ F + E E++ DL + F+RQG G V G+
Sbjct: 73 LAGVSDRDAAEALRGAVVRISRRHFPAPD--EGEYYWVDLIGLAVFNRQGDCLGTVKGLM 130
Query: 124 NFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L+I+ M ++ LIPF + V +++++ K+ +D
Sbjct: 131 DNGAHPVLQIETGMPEDKKRELLIPFVERHVGKIDIENRKMTVD 174
>gi|88606853|ref|YP_505787.1| 16S rRNA processing protein RimM [Anaplasma phagocytophilum HZ]
gi|109892998|sp|Q2GIL4|RIMM_ANAPZ RecName: Full=Ribosome maturation factor rimM
gi|88597916|gb|ABD43386.1| 16S rRNA processing protein RimM [Anaplasma phagocytophilum HZ]
Length = 171
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM-YRKNKRFIAT 63
D +L+ I HG+ G V I ++ ++P D+ Y ++ + L++ M KN IA
Sbjct: 5 DTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGCVIAK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SGID+ SA L++ KLY +L+ DEF+ +L + +G V V+
Sbjct: 65 ISGIDDRCSAEALKNKKLYVSSSCL--PKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVF 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
NFG+G I+EI K + FT ++++ ++ I P
Sbjct: 123 NFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMTIVP 163
>gi|238651045|ref|YP_002916902.1| 16S rRNA-processing protein [Rickettsia peacockii str. Rustic]
gi|238625143|gb|ACR47849.1| 16S rRNA-processing protein [Rickettsia peacockii str. Rustic]
Length = 165
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGA I+EI+ + + T L+PF K
Sbjct: 118 IKNILNFGASDIIEIEFSDQTTELLPFNK 146
>gi|91205583|ref|YP_537938.1| 16S rRNA-processing protein [Rickettsia bellii RML369-C]
gi|109893045|sp|Q1RIG5|RIMM_RICBR RecName: Full=Ribosome maturation factor rimM
gi|91069127|gb|ABE04849.1| 16S rRNA processing protein RimM [Rickettsia bellii RML369-C]
Length = 166
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G + + S+ + + + L + ++ I + ++N +
Sbjct: 1 MDSLENLILVGVIKSCHGIKGHIILRSFTDPTVKITERELVNESGEKVNI-NLIKQNSKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F+ I + A+ L+ KL+ R +LEEDEF+ TDL + D G+
Sbjct: 60 ELICQFNDISTRNEAANLKGYKLFCLRSSLP--KLEEDEFYITDLNNLPILDNNHTEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+E++ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEVEFLDKTTELLPFNK 146
>gi|331000897|ref|ZP_08324534.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
gi|329569856|gb|EGG51613.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
Length = 174
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + +GL G V + + L ++VL + R + + K +A
Sbjct: 12 IVLGALHGAYGLKGWVRVQPFQGTSALLGSKHWQHVLPDGEVRPVELEKAKLHGAGIVAK 71
Query: 64 FSGIDNIHSASELRD-LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID A+ LR + LY R+DF E EE+E++ DL + +++G+ GQV G+
Sbjct: 72 FQGIDTPEDAAALRGAVALY--RKDFP--EAEENEYYWVDLIGCDVVNKEGQSIGQVKGM 127
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G IL +K K LIPF + + EVN++ KI++D
Sbjct: 128 IDNGVHDILNVKRADGKEVLIPFVEDYLAEVNVEAKKIVVD 168
>gi|258423920|ref|ZP_05686805.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
gi|257845949|gb|EEV69978.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
Length = 167
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR-ILKMYRKNKRF-IA 62
V + I THG+ GE+ + S + + + + ++N +L+ +K +R +K +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLKYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|88194946|ref|YP_499746.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|122539706|sp|Q2FZ44|RIMM_STAA8 RecName: Full=Ribosome maturation factor rimM
gi|87202504|gb|ABD30314.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 167
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCAVFDDQKTPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|157827297|ref|YP_001496361.1| 16S rRNA-processing protein RimM [Rickettsia bellii OSU 85-389]
gi|157802601|gb|ABV79324.1| 16S rRNA-processing protein [Rickettsia bellii OSU 85-389]
Length = 166
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G + + S+ + + + L + ++ I + ++N +
Sbjct: 1 MDSLENLILVGVIKSCHGIKGHIILRSFTDPTVKITERELVNESGEKVNI-NLIKQNSKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F+ I + A L+ KL+ R +LEEDEF+ TDL + D G+
Sbjct: 60 ELICQFNDISTRNEAENLKGYKLFCLRSSLP--KLEEDEFYITDLNNLPILDNNHTEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+E++ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEVEFLDKTTELLPFNK 146
>gi|157964428|ref|YP_001499252.1| 16S rRNA-processing protein RimM [Rickettsia massiliae MTU5]
gi|166985969|sp|A8F1B9|RIMM_RICM5 RecName: Full=Ribosome maturation factor rimM
gi|157844204|gb|ABV84705.1| 16S rRNA processing protein RimM [Rickettsia massiliae MTU5]
Length = 165
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I K+ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHI-KLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G+
Sbjct: 60 ELICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPILNQDHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + + T L+P K
Sbjct: 118 IKNILNFGAGDIIEIEFSDQTTELLPCNK 146
>gi|298694532|gb|ADI97754.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 167
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDIENKKIIITPMEGLLD 167
>gi|329733641|gb|EGG69969.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21193]
Length = 167
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 TNIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|15924229|ref|NP_371763.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926822|ref|NP_374355.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus N315]
gi|21282851|ref|NP_645939.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MW2]
gi|49486078|ref|YP_043299.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651808|ref|YP_186114.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87162204|ref|YP_493829.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267730|ref|YP_001246673.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|150393788|ref|YP_001316463.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|151221361|ref|YP_001332183.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979560|ref|YP_001441819.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu3]
gi|221142029|ref|ZP_03566522.1| 16S rRNA-processing protein [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315597|ref|ZP_04838810.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731857|ref|ZP_04866022.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733523|ref|ZP_04867688.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006026|ref|ZP_05144627.2| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425293|ref|ZP_05601718.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427953|ref|ZP_05604351.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430586|ref|ZP_05606968.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433347|ref|ZP_05609705.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257436189|ref|ZP_05612236.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257795705|ref|ZP_05644684.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|258415929|ref|ZP_05682199.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|258421691|ref|ZP_05684615.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|258434847|ref|ZP_05688921.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|258444577|ref|ZP_05692906.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|258447590|ref|ZP_05695734.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|258449432|ref|ZP_05697535.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|258452537|ref|ZP_05700543.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|258454811|ref|ZP_05702775.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|262048137|ref|ZP_06021024.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262051868|ref|ZP_06024084.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|269202855|ref|YP_003282124.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|282892726|ref|ZP_06300961.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|282903793|ref|ZP_06311681.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282905557|ref|ZP_06313412.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908532|ref|ZP_06316362.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910811|ref|ZP_06318614.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914015|ref|ZP_06321802.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282918937|ref|ZP_06326672.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282920022|ref|ZP_06327751.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282924060|ref|ZP_06331736.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282927580|ref|ZP_06335196.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|283957981|ref|ZP_06375432.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293501047|ref|ZP_06666898.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510008|ref|ZP_06668716.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|293526595|ref|ZP_06671280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|294848233|ref|ZP_06788980.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|295406174|ref|ZP_06815981.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295427725|ref|ZP_06820357.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296274796|ref|ZP_06857303.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MR1]
gi|297208117|ref|ZP_06924548.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297244402|ref|ZP_06928285.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297591316|ref|ZP_06949954.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300912197|ref|ZP_07129640.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381197|ref|ZP_07363850.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|54039059|sp|P66656|RIMM_STAAN RecName: Full=Ribosome maturation factor rimM
gi|54039060|sp|P66657|RIMM_STAAW RecName: Full=Ribosome maturation factor rimM
gi|54041929|sp|P66655|RIMM_STAAM RecName: Full=Ribosome maturation factor rimM
gi|56749523|sp|Q6G9X4|RIMM_STAAS RecName: Full=Ribosome maturation factor rimM
gi|67461252|sp|Q5HGJ3|RIMM_STAAC RecName: Full=Ribosome maturation factor rimM
gi|109893052|sp|Q2FHJ9|RIMM_STAA3 RecName: Full=Ribosome maturation factor rimM
gi|166226477|sp|A7X1K9|RIMM_STAA1 RecName: Full=Ribosome maturation factor rimM
gi|172048857|sp|A6QGD9|RIMM_STAAE RecName: Full=Ribosome maturation factor rimM
gi|189040856|sp|A6U158|RIMM_STAA2 RecName: Full=Ribosome maturation factor rimM
gi|189040857|sp|A5ISC4|RIMM_STAA9 RecName: Full=Ribosome maturation factor rimM
gi|13701039|dbj|BAB42334.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus N315]
gi|14247009|dbj|BAB57401.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21204290|dbj|BAB94987.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49244521|emb|CAG42950.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285994|gb|AAW38088.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87128178|gb|ABD22692.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|147740799|gb|ABQ49097.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|149946240|gb|ABR52176.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|150374161|dbj|BAF67421.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721695|dbj|BAF78112.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|253724409|gb|EES93138.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728577|gb|EES97306.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271750|gb|EEV03888.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274794|gb|EEV06281.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278714|gb|EEV09333.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281440|gb|EEV11577.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257284471|gb|EEV14591.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257789677|gb|EEV28017.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|257839265|gb|EEV63739.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|257842377|gb|EEV66802.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|257849208|gb|EEV73190.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|257850070|gb|EEV74023.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|257853781|gb|EEV76740.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|257857420|gb|EEV80318.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|257859755|gb|EEV82597.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|257863194|gb|EEV85958.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|259160269|gb|EEW45297.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|259163703|gb|EEW48258.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262075145|gb|ACY11118.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|269940731|emb|CBI49112.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282314032|gb|EFB44424.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282316747|gb|EFB47121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282322083|gb|EFB52407.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282325416|gb|EFB55725.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327594|gb|EFB57877.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330849|gb|EFB60363.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590583|gb|EFB95660.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|282594738|gb|EFB99722.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282595411|gb|EFC00375.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282764723|gb|EFC04848.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|283790130|gb|EFC28947.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285816921|gb|ADC37408.1| 16S rRNA processing protein RimM [Staphylococcus aureus 04-02981]
gi|290920667|gb|EFD97730.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|291096052|gb|EFE26313.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466952|gb|EFF09470.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|294825033|gb|EFG41455.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|294968762|gb|EFG44784.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295128083|gb|EFG57717.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887360|gb|EFH26262.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297178432|gb|EFH37678.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297576202|gb|EFH94918.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300886443|gb|EFK81645.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751062|gb|ADL65239.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340180|gb|EFM06121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438383|gb|ADQ77454.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829633|emb|CBX34475.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131032|gb|EFT87016.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS03]
gi|315194127|gb|EFU24520.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198478|gb|EFU28807.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140945|gb|EFW32792.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144340|gb|EFW36106.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313908|gb|AEB88321.1| Ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus T0131]
gi|329724775|gb|EGG61280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21189]
gi|329727338|gb|EGG63794.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21172]
Length = 167
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|49483402|ref|YP_040626.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA252]
gi|56749570|sp|Q6GHJ6|RIMM_STAAR RecName: Full=Ribosome maturation factor rimM
gi|49241531|emb|CAG40217.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 167
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKES--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|296116584|ref|ZP_06835194.1| 16S rRNA processing protein RimM [Gluconacetobacter hansenii ATCC
23769]
gi|295976796|gb|EFG83564.1| 16S rRNA processing protein RimM [Gluconacetobacter hansenii ATCC
23769]
Length = 185
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG- 66
+LM +G HG+ G V + SYA P DL RY +++ L + + +G
Sbjct: 6 ILMGVVGRPHGVRGLVRVHSYAAVPEDLARYGALRDEHGNAWHLSWRGQGIAELRNDAGQ 65
Query: 67 -IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG---KYWGQVCGV 122
+ + A +L + KLY R D E EEDEF+ DL M+ ++ G G V V
Sbjct: 66 ALSSREDAQKLVNRKLYVGRVDLP--EPEEDEFYVADLVGMQVIEQAGTPLHELGHVRLV 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+++GAG LEI T L+PFT+ V V++ +I
Sbjct: 124 HDYGAGVSLEITG-QGGTILLPFTRACVPVVDMGARRI 160
>gi|294085385|ref|YP_003552145.1| 16S rRNA processing protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664960|gb|ADE40061.1| 16S rRNA processing protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 190
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRE--LRILKMYRKNKRFIATFSG 66
+A I +HG+ G V I + P L R+ +Y D ++ L+IL K +A
Sbjct: 14 VAAITGSHGVRGNVKIKPFTETPESLGRFDKVYLEDGQQVALKILSFGSKGV-VLARLGK 72
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ ++ LR LY R D L +DE ++ DL ++ G++ +++FG
Sbjct: 73 VESRDASDALRGQHLYVDRAALPD--LADDEIYHADLLGLDAVLEDDSLLGRIDAIHDFG 130
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG+++EI + ++PF+ A++ V L + ++++ P
Sbjct: 131 AGNVVEIIPPQGSSIMLPFSGSALVRVELDKRRVILAP 168
>gi|288553086|ref|YP_003425021.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
gi|288544246|gb|ADC48129.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
Length = 173
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPID-----LNRYVLYSNDNRELRILKM-YRKNKRF 60
L+ + I THG+ GE+ + S + P + +++ +N + + ++ +R +K F
Sbjct: 4 LLKVGKIVNTHGVRGEIRVISSTDFPDERYAKGCELWIVDANTKKHISVVVANHRVHKNF 63
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF G D+I+ E + LY + D L+E EF+ ++ E + ++ GQ+
Sbjct: 64 DLLTFEGYDSINQVEEFKGSTLYVSKDQLSD--LDEGEFYYHEIIGCEVYTTNNEHLGQI 121
Query: 120 CGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ GA + I+ K LIP+ + V+E+NL+ENK++IDP+
Sbjct: 122 KEIIETGANDVWVIRRAGGGKDILIPYIEDVVIEINLEENKVIIDPMEG 170
>gi|294011043|ref|YP_003544503.1| 16S rRNA processing protein RimM [Sphingobium japonicum UT26S]
gi|292674373|dbj|BAI95891.1| 16S rRNA processing protein RimM [Sphingobium japonicum UT26S]
Length = 159
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A I HG+ GEV + + L Y + R L + + +A F
Sbjct: 3 DKPVTLAVIIGAHGVTGEVRLKLFGEGAETLKSYGGFDAAGRTLTLKSVRPGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + +A LR +L R L E E+++ DL ++ F +G+ G V V N
Sbjct: 63 AEVGDRSAAEALRGTELTVPRSALPP--LGEGEYYHADLIDLPCFSSEGEGLGHVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPF 145
FGAG I+E++ K F+ P
Sbjct: 121 FGAGDIIEVERPNGKRFMAPM 141
>gi|218462267|ref|ZP_03502358.1| 16S rRNA-processing protein [Rhizobium etli Kim 5]
Length = 89
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
D QG +G V GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 11 DDQGVSYGTVTGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 70
>gi|330685679|gb|EGG97320.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU121]
Length = 167
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDN---RELRILKMYRKNKRF 60
V + I THG+ GEV + S N+ R+ VL + N +EL + YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEVKVKS--NSDFTDTRFQPGEVLTAKLNQIEKELTVTS-YRTHKGF 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GIDNI+ L+ LY +R D +D ELEE+EF+ +D+ FD + + G++
Sbjct: 60 HMLKFEGIDNINDIEYLKGALLYQER-DHEDIELEENEFYYSDIIGCTVFDDEQQPIGRI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ V EV+++ ++I P+ L+
Sbjct: 119 TSIFETGANDVWVVKG--DKEYLIPYIADVVKEVDVENKTVIITPMEGLLD 167
>gi|284024232|ref|ZP_06378630.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus 132]
Length = 167
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIIMPMEGLLD 167
>gi|164688560|ref|ZP_02212588.1| hypothetical protein CLOBAR_02205 [Clostridium bartlettii DSM
16795]
gi|164602973|gb|EDQ96438.1| hypothetical protein CLOBAR_02205 [Clostridium bartlettii DSM
16795]
Length = 170
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + Y N DL + L N + + ++ K I G
Sbjct: 10 IGQIVNTQGLKGEVRVYPYTDDINRFDDLEYFYLDKGLNNKYEVERVRYKGNMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L+ +Y R K ELEEDEFF DL ++ F G+ G V V
Sbjct: 70 IDSIELAQKLKTKNMYIGRDQGK--ELEEDEFFVADLIGLDVFTVDGEKVGVVKDVLQHA 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + N EK +LIP + V ++L+ENK++I+PI L+
Sbjct: 128 INDVYVVNNG-EKEYLIPSIEKFVPTIDLEENKMIINPIKGMLD 170
>gi|302332843|gb|ADL23036.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 167
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+E++ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEYYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIIKPMEGLLD 167
>gi|82750843|ref|YP_416584.1| 16S rRNA-processing protein RimM [Staphylococcus aureus RF122]
gi|282916489|ref|ZP_06324251.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283770301|ref|ZP_06343193.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
gi|109893053|sp|Q2YXK2|RIMM_STAAB RecName: Full=Ribosome maturation factor rimM
gi|82656374|emb|CAI80792.1| 16S rRNA processing protein [Staphylococcus aureus RF122]
gi|282319929|gb|EFB50277.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283460448|gb|EFC07538.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
Length = 167
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+E++ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEYYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|239622499|ref|ZP_04665530.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239514496|gb|EEQ54363.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 202
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 30/196 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGESEYIVEGSRTFKDRW 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG------- 113
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G
Sbjct: 67 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 125
Query: 114 -KYWGQVCGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
+ G+V V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 126 GQVVGKVADVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 185
Query: 159 KILIDPIAAGLNNTTM 174
+ +DP + M
Sbjct: 186 YLTLDPPGGLIPGCGM 201
>gi|283470452|emb|CAQ49663.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ST398]
Length = 167
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D L+E+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLDENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|323441015|gb|EGA98722.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O11]
gi|323442332|gb|EGA99962.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O46]
Length = 167
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GE+ + S N+ R+ V+++N++ E + K +R +K
Sbjct: 3 VEVGQIVNTHGIKGEIKVKS--NSDFTDVRFQPGQVLTVVHNNNDLEYTV-KSHRVHKGL 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V
Sbjct: 60 HMLTFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + IK + K +LIP+ V EV+++ KI I P+ L+
Sbjct: 119 INIFETGANDVWVIKGS--KEYLIPYIADVVKEVDIENKKISITPMEGLLD 167
>gi|296536510|ref|ZP_06898600.1| 16S rRNA processing protein RimM [Roseomonas cervicalis ATCC 49957]
gi|296263166|gb|EFH09701.1| 16S rRNA processing protein RimM [Roseomonas cervicalis ATCC 49957]
Length = 209
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+L+ IG HG+ G V ++++ +P + Y S+++ R + N +A G+
Sbjct: 6 ILVGEIGRPHGVRGIVRVNAFTADPAAIAGYGPLSDESGARRFALQWLGNG--LARIEGV 63
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ +A+ L +LY +R EE+EF+ DL + D G G V V ++GA
Sbjct: 64 ADRDAAARLTGTRLYVERDRLP--ATEEEEFYLADLVGLAVRDGSGATLGSVRSVEDYGA 121
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G L + + + L+PFT+ V +V + E
Sbjct: 122 GPFLTVIDGEGRELLLPFTRAVVPQVIIAEG 152
>gi|239636282|ref|ZP_04677284.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
gi|239597637|gb|EEQ80132.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
Length = 167
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDN---RELRILKMYRKNKRF 60
V + I THG+ GEV + S N+ R+ VL + N +EL + YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEVKVKS--NSDFTDTRFQPGEVLTAKLNQIEKELTVTS-YRTHKGF 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GIDNI+ L+ LY +R D +D ELEE+EF+ +D+ FD + + G++
Sbjct: 60 HMLKFEGIDNINDIEYLKGAVLYQER-DHEDIELEENEFYYSDIIGCTVFDDEQQPIGRI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ V +V+++ ++I P+ L+
Sbjct: 119 TSIFETGANDVWVVKG--DKEYLIPYIADVVKDVDVENKTVIITPMEGLLD 167
>gi|227545804|ref|ZP_03975853.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133333|ref|YP_004000672.1| rimm [Bifidobacterium longum subsp. longum BBMN68]
gi|322688487|ref|YP_004208221.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. infantis
157F]
gi|322690497|ref|YP_004220067.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. longum
JCM 1217]
gi|227213920|gb|EEI81759.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|311772552|gb|ADQ02040.1| RimM [Bifidobacterium longum subsp. longum BBMN68]
gi|320455353|dbj|BAJ65975.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459823|dbj|BAJ70443.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 207
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 30/196 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG------- 113
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 114 -KYWGQVCGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
+ G+V V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVVDVIDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 190
Query: 159 KILIDPIAAGLNNTTM 174
+ +DP + M
Sbjct: 191 YLTLDPPGGLIPGCGM 206
>gi|320096203|ref|ZP_08027791.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 178
str. F0338]
gi|319976868|gb|EFW08623.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 178
str. F0338]
Length = 170
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKNKRFIATF 64
L+ A IG HGL GEV +D +++P L ++ S + + R +A
Sbjct: 2 LMTAAIIGPAHGLKGEVVLDVRSDDPAVLAPGASLVLSGSGSGVVVESTRVHKGRVLARL 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A LR L D EED ++ L+ + D QG+ G V G+
Sbjct: 62 GGVGTREEAEALRGAALLVAPHD------EEDAWYPHQLKGLRAEDPQGRPLGSVSGLRP 115
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +L + T ++PF + V V+++ +++IDP
Sbjct: 116 GGAQDLLLV-GTERGEVMVPFVRQLVPTVDVEGGRVVIDP 154
>gi|83313163|ref|YP_423427.1| 16S rRNA-processing protein RimM [Magnetospirillum magneticum
AMB-1]
gi|109893022|sp|Q2VZV7|RIMM_MAGMM RecName: Full=Ribosome maturation factor rimM
gi|82948004|dbj|BAE52868.1| RimM protein, required for 16S rRNA processing [Magnetospirillum
magneticum AMB-1]
Length = 176
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Query: 23 VYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATFSGIDNIHSASELRDLK 80
V I S+ +P D+ Y N+ ++ LK+ + K IAT GI + +A L+ +
Sbjct: 20 VRIKSFTEDPADIGFYSPVENEAGSIKYRLKVTGEVKGLVIATLDGIGDRDAAEALKGTE 79
Query: 81 LYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT 140
L+ R+ L EDEF +DL + GK G V V ++GAG +L+IK +
Sbjct: 80 LWVARERLP--RLAEDEFLYSDLIGLVAEGVDGKRLGIVKAVADYGAGDVLDIKLEPKGD 137
Query: 141 FLIPFTKFAVLEVNLQENKILIDP 164
++PFT+ +V EV++ ++++ P
Sbjct: 138 MMVPFTQASVPEVDIAGGRLVVVP 161
>gi|317482001|ref|ZP_07941026.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
gi|316916568|gb|EFV37965.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
Length = 204
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG------- 113
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 114 -KYWGQVCGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
+ G+V V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVADVIDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQ 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|300024813|ref|YP_003757424.1| 16S rRNA processing protein RimM [Hyphomicrobium denitrificans ATCC
51888]
gi|299526634|gb|ADJ25103.1| 16S rRNA processing protein RimM [Hyphomicrobium denitrificans ATCC
51888]
Length = 185
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYR-KNKRFIAT 63
K +L+ I HG+ G++ + +Y P + Y L + LK+ R +K +A
Sbjct: 8 KRILLGEISGVHGIRGDILVRTYTATPDAIASYGPLTDATGTKTFSLKIVRVTDKGVVAR 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+GI + +A LR KL+ R+ E EF+++DL + G++ V
Sbjct: 68 IAGISDRTTAEALRGTKLFIAREKLP--ETSASEFYHSDLIGLNAVAEDNTPIGKIVSVQ 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
NFGAG +LE++ + IPF V +V+L ++I
Sbjct: 126 NFGAGDLLELQPPEGASEFIPFEDQWVPKVDLSARTVVI 164
>gi|125973285|ref|YP_001037195.1| 16S rRNA processing protein RimM [Clostridium thermocellum ATCC
27405]
gi|256003765|ref|ZP_05428753.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
2360]
gi|281417489|ref|ZP_06248509.1| 16S rRNA processing protein RimM [Clostridium thermocellum JW20]
gi|166226436|sp|A3DDH3|RIMM_CLOTH RecName: Full=Ribosome maturation factor rimM
gi|125713510|gb|ABN52002.1| 16S rRNA processing protein RimM [Clostridium thermocellum ATCC
27405]
gi|255992326|gb|EEU02420.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
2360]
gi|281408891|gb|EFB39149.1| 16S rRNA processing protein RimM [Clostridium thermocellum JW20]
gi|316940483|gb|ADU74517.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
1313]
Length = 174
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVL--YSNDNRELRILKMYRKNKRFIAT 63
+ I THG+ GEV +NP N+ YV SN+ + I+ + I
Sbjct: 7 VGKIVNTHGIKGEVKAIPLTDNPRRFNKLKWAYVSKEISNEMPKFDIVSVKHHKNFVILK 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FSGID++++A +L++ + R+D +L +D FF DL M FD + K G + V
Sbjct: 67 FSGIDDMNAAEKLKEHFVIIDRKDA--VKLPKDTFFICDLIGMNVFDTEEKKLGVLTDVL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ + +K+ K LIP K V +V ++NK+++D
Sbjct: 125 STGSNDVYVVKSDNNKEILIPALKSVVKKVCFEDNKMVVD 164
>gi|281412660|ref|YP_003346739.1| 16S rRNA processing protein RimM [Thermotoga naphthophila RKU-10]
gi|281373763|gb|ADA67325.1| 16S rRNA processing protein RimM [Thermotoga naphthophila RKU-10]
Length = 176
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE---LRILKMYRKN 57
LD+ V + I THGL GEV Y N+ +L+ +LY+++ + L + + R N
Sbjct: 9 LDERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSDVILYNSEKKAFYNLTVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID I +A +++ +++ K ++ +L EDE++ ++ + + F G+ G
Sbjct: 69 KLFLIRFKSIDTIEAAEKIKGCEVFVKYEELP--KLNEDEYYFYEILDCDVFYESGENVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+V + G+ +L ++ ++T LIP TK ++E++ +I+
Sbjct: 127 KVVDIIETGSNDVLVVRKKKKET-LIPMTKDCIVEIDKGAKRII 169
>gi|226945996|ref|YP_002801069.1| 16S rRNA-processing protein RimM [Azotobacter vinelandii DJ]
gi|259585642|sp|C1DDY6|RIMM_AZOVD RecName: Full=Ribosome maturation factor rimM
gi|226720923|gb|ACO80094.1| 16S rRNA processing protein RimM [Azotobacter vinelandii DJ]
Length = 178
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYS----NDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ +PID L Y ++ ++ R++ +++ + +
Sbjct: 9 DGLIVLGKITSVHGVRGEVKVYSF-TDPIDNLLDYRFWTLRRGDERRQIELVRGRPQGRL 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A GI++ A L D ++ L+E EF+ LE + DR+G+ +G+V
Sbjct: 68 LVARLKGIEDRDGARALADFEVCVPIAQLP--RLDEGEFYWHQLEGLRVVDREGRLFGKV 125
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L ++ ++ L+P+T VL V+L +I +D
Sbjct: 126 DHLLETGANDVLVVRPCTGSLDDRERLLPYTDQCVLRVDLAAGEIRVD 173
>gi|150021669|ref|YP_001307023.1| 16S rRNA processing protein RimM [Thermosipho melanesiensis BI429]
gi|172048673|sp|A6LNY7|RIMM_THEM4 RecName: Full=Ribosome maturation factor rimM
gi|149794190|gb|ABR31638.1| 16S rRNA processing protein RimM [Thermosipho melanesiensis BI429]
Length = 178
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNREL---RILKMYRKNKRFI 61
V +A +G THGLNGE+ + N P L +Y+ ++L RI+ M N +I
Sbjct: 13 VPIAVLGKTHGLNGELRLFPLTNMPEVIESLEEVFIYNEKVKKLLIGRIIHMSLANGYYI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID ++ A + LY ++ L DE++ ++ M+ +D +G + G +
Sbjct: 73 VKFRGIDTLNDAKKFVGSTLYIEKSRLPI--LSSDEYYFYEVIGMKVYDEKGIFLGNIDE 130
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V G+ + I + LIP K VL+++ + NKI++
Sbjct: 131 VIQTGSNDVFVINKDTKDEILIPVIKEYVLQIDKKSNKIVV 171
>gi|115377061|ref|ZP_01464277.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
gi|115365900|gb|EAU64919.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
Length = 163
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIATFSG 66
+ HG+ GE+ I ++ P + V + + R LRI + K I G
Sbjct: 1 MARAHGIRGEIAIRTFEXRPRRRSMVVERLSVRTRAGEERVLRIEDVRPTPKENIVALEG 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+D +A L ++A R+D E +E EFF DL + D G+ G V ++N G
Sbjct: 61 VDTREAAEALVGAAVFAYREDL--EPPQEGEFFQGDLVGLTAVDEAGQALGTVEEIWNTG 118
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
L I++ + ++PF V V+L + KI+I P+
Sbjct: 119 EVPNLVIRSAGQAELIVPFADEFVPSVDLPQGKIVIRPL 157
>gi|310821319|ref|YP_003953677.1| ribosome maturation factor rimm [Stigmatella aurantiaca DW4/3-1]
gi|309394391|gb|ADO71850.1| Ribosome maturation factor RimM [Stigmatella aurantiaca DW4/3-1]
Length = 173
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 13 IGTTHGLNGEVYIDSY--ANNPIDLNRYV---LYSNDNRELRILKMYRKNKRFIATFSGI 67
+ HG+ GE+ I ++ A+ +D+ + + + R LRI + K I G+
Sbjct: 12 VARAHGIRGEIAIRTFDAASEALDVVERLSVRTRAGEERVLRIEDVRPTPKENIVALEGV 71
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
D +A L ++A R+D E +E EFF DL + D G+ G V ++N G
Sbjct: 72 DTREAAEALVGAAVFAYREDL--EPPQEGEFFQGDLVGLTAVDEAGQALGTVEEIWNTGE 129
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
L I++ + ++PF V V+L + KI+I P+
Sbjct: 130 VPNLVIRSAGQAELIVPFADEFVPSVDLPQGKIVIRPL 167
>gi|15644316|ref|NP_229368.1| 16S rRNA processing protein, putative [Thermotoga maritima MSB8]
gi|148270354|ref|YP_001244814.1| 16S rRNA processing protein RimM [Thermotoga petrophila RKU-1]
gi|170289020|ref|YP_001739258.1| 16S rRNA processing protein RimM [Thermotoga sp. RQ2]
gi|6685868|sp|Q9X1Q4|RIMM_THEMA RecName: Full=Ribosome maturation factor rimM
gi|166226486|sp|A5IM15|RIMM_THEP1 RecName: Full=Ribosome maturation factor rimM
gi|4982137|gb|AAD36635.1|AE001802_4 16S rRNA processing protein, putative [Thermotoga maritima MSB8]
gi|147735898|gb|ABQ47238.1| 16S rRNA processing protein RimM [Thermotoga petrophila RKU-1]
gi|170176523|gb|ACB09575.1| 16S rRNA processing protein RimM [Thermotoga sp. RQ2]
Length = 176
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE---LRILKMYRKN 57
L++ V + I THGL GEV Y N+ +L+ VLY+++ + L + + R N
Sbjct: 9 LNERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNSEKKAFYNLTVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID I +A ++ +++ K ++ +L EDE++ ++ + + F G+ G
Sbjct: 69 KLFLIRFKSIDTIEAAERIKGCEVFIKYEELP--KLSEDEYYFYEILDCDVFYESGENVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+V + G+ +L ++ ++T LIP TK ++E++ KI+
Sbjct: 127 KVVDIIETGSNDVLVVRKKKKET-LIPMTKDCIVEIDKGAKKII 169
>gi|157825607|ref|YP_001493327.1| 16S rRNA-processing protein RimM [Rickettsia akari str. Hartford]
gi|166226473|sp|A8GN44|RIMM_RICAH RecName: Full=Ribosome maturation factor rimM
gi|157799565|gb|ABV74819.1| 16S rRNA-processing protein [Rickettsia akari str. Hartford]
Length = 165
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L N++RE +++ +N +
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLV-NESREDIHIQLISQNAKG 59
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F+ I + A L+ K++ R E EDEF+ DL + D K G+
Sbjct: 60 ELICRFNDITTRNEAENLKGYKIFCLRASLP--EPAEDEFYIADLNHLPVLDPNHKEIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + NFGAG I+EI+ + T L+PF K
Sbjct: 118 IKNILNFGAGDIIEIEFLDQTTELLPFNK 146
>gi|149184774|ref|ZP_01863092.1| 16S rRNA processing protein [Erythrobacter sp. SD-21]
gi|148832094|gb|EDL50527.1| 16S rRNA processing protein [Erythrobacter sp. SD-21]
Length = 161
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
D V +A + HG+ GEV + + L + S + L + K+ NK IA
Sbjct: 3 DTPVTLAAVTGAHGVAGEVRLKLFGEGLEGLKPH--KSFNEGALTLSKLRSDNKGGAIAR 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ + + +A +LR L R+ LEE EF+ +DL + G+ G+VC V
Sbjct: 61 FAEVADRTAAEKLRGTVLTVPREALP--ALEEGEFYYSDLLGLPVVTDTGEAVGRVCAVE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAV 150
NFGA I+EI+ K F++P T+ AV
Sbjct: 119 NFGATEIVEIEKPDGKKFMVPLTRQAV 145
>gi|167769123|ref|ZP_02441176.1| hypothetical protein ANACOL_00446 [Anaerotruncus colihominis DSM
17241]
gi|167668763|gb|EDS12893.1| hypothetical protein ANACOL_00446 [Anaerotruncus colihominis DSM
17241]
Length = 185
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR--ELRILKMYRKNKRF-IATFSGIDN 69
I TTHG+ GEV + + + P L ++ D R + R+++ R +K I F G++N
Sbjct: 26 IVTTHGVRGEVRVQPWCDTPGFLTQFACLYLDARGSQARVVERARVHKNIVIVKFEGVEN 85
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAG 128
+ A+ LR +Y R D ELEE E F DL D G +GQV V GA
Sbjct: 86 VEDAAGLRGKTVYIDRADV---ELEEGECFVQDLIGCTVRDADTGADYGQVYDVRATGAN 142
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ +++ + L+P VL +L I I P+
Sbjct: 143 DVYYLRDAAGRERLVPAIADVVLAKDLDAGIITIRPL 179
>gi|291542203|emb|CBL15313.1| 16S rRNA processing protein RimM [Ruminococcus bromii L2-63]
Length = 171
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRF-IATFSGIDNIHSA 73
THG+ GEV ID + ++P L + L+ ++N I R +K +A G+D I +A
Sbjct: 14 THGIKGEVRIDPWCDSPEFLCAFKKLWLDENGTEFIEVKSRPHKNIALAKIKGVDTIEAA 73
Query: 74 SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCGVYNFGAGSILE 132
+ R +Y R D L E F DL +E D G+ +G++ V GA + E
Sbjct: 74 EKYRGKVVYINRDDI---NLAEGVHFVQDLIGLEVKDAGNGRVYGKISDVLRTGANDVYE 130
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
IK+ KT+L P V E+N+ + +LI P+
Sbjct: 131 IKDADGKTYLAPVIDDVVKEINVNDGYVLIVPM 163
>gi|70726676|ref|YP_253590.1| 16S rRNA-processing protein RimM [Staphylococcus haemolyticus
JCSC1435]
gi|109893054|sp|Q4L5U1|RIMM_STAHJ RecName: Full=Ribosome maturation factor rimM
gi|68447400|dbj|BAE04984.1| probable 16S rRNA processing protein [Staphylococcus haemolyticus
JCSC1435]
Length = 167
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
V + I THG+ GEV + S N+ R+ V + N +L +L YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEVKVKS--NSDFTDTRFQPGEVLTVNHQNHEEQLTVLS-YRVHKGF 59
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI+NI+ + + LY +R D +D EL E+E++ +D+ FD + G+V
Sbjct: 60 HMLKFEGINNINDVEQYKGDYLYQER-DHEDIELAENEYYYSDIIGSTVFDNDNQPIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K EK +LIP+ V E++++ I I P+ L+
Sbjct: 119 INIFETGANDVWVVKG--EKEYLIPYIADVVKEIDIENKTIRITPMEGLLD 167
>gi|268609627|ref|ZP_06143354.1| putative 16S rRNA processing protein [Ruminococcus flavefaciens
FD-1]
Length = 167
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK-RFIATFSGIDNI 70
I TTHG+ GEV I Y ++P L + L+ NR+ I+ R K IA G+D
Sbjct: 11 IVTTHGIRGEVKIMPYTDSPELLAEFDRLFIGKNRDEVIITRSRVFKNTVIAKIEGVDTP 70
Query: 71 HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAGS 129
+A +LR+ LY R D EL++D +F DL +E D K +G++ V GA
Sbjct: 71 EAAEKLRNKVLYMHRDDL---ELDDDTYFIQDLIGLEVRDADTDKVYGKIADVLETGAND 127
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ IK ++ +LIP V+ ++ N + I P+
Sbjct: 128 VYVIKGE-DREYLIPAIADVVVSTDIDNNLMTIRPL 162
>gi|56417251|ref|YP_154325.1| 16S rRNA processing protein [Anaplasma marginale str. St. Maries]
gi|222475615|ref|YP_002564032.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Florida]
gi|56388483|gb|AAV87070.1| 16S rRNA processing protein [Anaplasma marginale str. St. Maries]
gi|222419753|gb|ACM49776.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Florida]
Length = 190
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK-R 59
MV+ D +VL+ + HG+ G V + ++ +P ++ Y ++ + + +
Sbjct: 20 MVRGD-MVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADS 78
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA F G+ + + +LR +LY R L+EDEF+ +L M+ G +G +
Sbjct: 79 VIAKFDGLSSRTESEKLRGKRLYVSRSSLP--RLQEDEFYENELIGMDAKLEDGTAYGVI 136
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTK--FAVLEV 153
+ NFG+ I+E+ + K ++PF++ F V++V
Sbjct: 137 SAILNFGSCDIIELSTSTGKVVMVPFSRSTFPVVDV 172
>gi|127511997|ref|YP_001093194.1| 16S rRNA-processing protein [Shewanella loihica PV-4]
gi|171855242|sp|A3QBT7|RIMM_SHELP RecName: Full=Ribosome maturation factor rimM
gi|126637292|gb|ABO22935.1| 16S rRNA processing protein RimM [Shewanella loihica PV-4]
Length = 176
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G +HG+ G + I SY ++ D+ Y + + RE+++ + + K IA
Sbjct: 8 VVLGKLGASHGIKGWLKITSYTDSVEDIFDYSPWLIKEQGEWREVKVAQWRYQGKAIIAA 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ A L + ++ + K L EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVTTRDQAQMLTNCEIAIPAEAMK--ALPEDEFYWRDLIGCEVVNTKGYKMGKVDQIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ +LEVNL E +IL+D
Sbjct: 126 ETGSNDVLLVKANAKDGFGKTERMIPFVTEQFILEVNLAEKQILVD 171
>gi|153810633|ref|ZP_01963301.1| hypothetical protein RUMOBE_01017 [Ruminococcus obeum ATCC 29174]
gi|149833029|gb|EDM88111.1| hypothetical protein RUMOBE_01017 [Ruminococcus obeum ATCC 29174]
Length = 168
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
++ L+ + I TTHG+ GEV + + P +DL YVL +ELR L + KN RF
Sbjct: 1 MEDLLKVGVITTTHGVRGEVKVYPTTDEPERFLDL-EYVLLDT-GKELRRLDI--KNVRF 56
Query: 61 -----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
I F GIDNI+ + + L+ R++ +EL+EDE++ DL M+ G
Sbjct: 57 FKNLVILKFDGIDNINDIEKYKGRDLWIPREEA--QELDEDEYYIADLLGMKVLLEDGSE 114
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+G + V GA + + + L+P K +L+V+++ N + +
Sbjct: 115 FGTLKNVMETGANDVYIVDSVEHGEVLLPAIKECILDVDIETNTMTV 161
>gi|269958359|ref|YP_003328146.1| 16S rRNA processing protein [Anaplasma centrale str. Israel]
gi|67461308|sp|Q5P9G0|RIMM_ANAMM RecName: Full=Ribosome maturation factor rimM
gi|269848188|gb|ACZ48832.1| 16S rRNA processing protein [Anaplasma centrale str. Israel]
Length = 171
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK-R 59
MV+ D +VL+ + HG+ G V + ++ +P ++ Y ++ + + +
Sbjct: 1 MVRGD-MVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA F G+ + + +LR +LY R L+EDEF+ +L M+ G +G +
Sbjct: 60 VIAKFDGLSSRTESEKLRGKRLYVSRSSLP--RLQEDEFYENELIGMDAKLEDGTAYGVI 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTK--FAVLEV 153
+ NFG+ I+E+ + K ++PF++ F V++V
Sbjct: 118 SAILNFGSCDIIELSTSTGKVVMVPFSRSTFPVVDV 153
>gi|258542791|ref|YP_003188224.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01]
gi|256633869|dbj|BAH99844.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01]
gi|256636928|dbj|BAI02897.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-03]
gi|256639981|dbj|BAI05943.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-07]
gi|256643037|dbj|BAI08992.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-22]
gi|256646092|dbj|BAI12040.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-26]
gi|256649145|dbj|BAI15086.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-32]
gi|256652132|dbj|BAI18066.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655189|dbj|BAI21116.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-12]
Length = 180
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 32/170 (18%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
L+LM +G HG+ G V + +YA NP L + +D + +++ ++ G
Sbjct: 5 LILMGVVGKPHGVRGLVRVRAYAENPQTLEQCGALQDD-----------QGRKWFLSWRG 53
Query: 67 IDNIH--------------SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
D++ +A L + +LY R + EE+EF++ DL ME F+
Sbjct: 54 ADSVAELRDANGAPLADRDAAQALVNTRLYVPRAALPEP--EEEEFYHADLIGMEAFE-N 110
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G G+V V+++GAG+ LE+ + L+PFT+ V EV+L++ I +
Sbjct: 111 GLSLGRVVMVHDYGAGASLELSDGS----LVPFTQACVPEVHLKQRTITV 156
>gi|219682748|ref|YP_002469131.1| 16S rRNA processing protein RimM [Bifidobacterium animalis subsp.
lactis AD011]
gi|219620398|gb|ACL28555.1| 16S rRNA processing protein RimM [Bifidobacterium animalis subsp.
lactis AD011]
Length = 217
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 34/185 (18%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDN-----RELRILKMYRK 56
+L+ + IG GL GEV ++ Y ++P R+ VLY+ ++ R +
Sbjct: 14 ELLRVCRIGKAQGLKGEVSVELYTDDP--HARFAPGEVLYARESAADALRPYTVAAARTF 71
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF------- 109
R+ F G+D+ ++A LR+ LY + Q EL++DEF+ DL +E +
Sbjct: 72 KNRWYVRFEGVDDRNAAEALRNTVLYGEPQ-----ELDDDEFYPKDLLGLEVYLESEVSA 126
Query: 110 -----DRQGKYW-----GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
+G + G+V V GA +L+I+ + FL+PF + V EVNL+E
Sbjct: 127 ANADDAPEGAEFEFTDLGKVVDVIE-GAQWLLKIRMPNREAFLLPFVEALVPEVNLEEGY 185
Query: 160 ILIDP 164
+ +DP
Sbjct: 186 LTVDP 190
>gi|220931576|ref|YP_002508484.1| 16S rRNA processing protein RimM [Halothermothrix orenii H 168]
gi|254797752|sp|B8CW20|RIMM_HALOH RecName: Full=Ribosome maturation factor rimM
gi|219992886|gb|ACL69489.1| 16S rRNA processing protein RimM [Halothermothrix orenii H 168]
Length = 170
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNR--ELRILKMYRKNKRF 60
DK++ + + T G GEV + + P +L V DNR E R+ ++ K
Sbjct: 3 DKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFV 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GID+I +A +D + R++ D L E +F +L E + +G + G+V
Sbjct: 63 IIKFEGIDDIGAALAYKDYFIKIPREETLD--LPEGHYFIFELLGFEVYTDEGIFLGKVV 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G I+++K +K +++P + V+ +N E KI+I PI L+
Sbjct: 121 DIITTGGTDIIKVKGD-KKDYMVPAAREIVVNINPDEEKIIIKPIPGLLD 169
>gi|218283555|ref|ZP_03489545.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
gi|218215823|gb|EEC89361.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
Length = 162
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF-I 61
++ +A I THGL GE + ++P +R+ VL+ D R L +++ YR+ K F
Sbjct: 1 MIKVAQIINTHGLKGECKLYLVTDDP--QHRFEKGRVLHLEDGRTLTVVR-YREQKGFGY 57
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID+I A +L+ L+ + D ELEE +++ +L ++ + + G+V
Sbjct: 58 CYFEGIDSIEKAEQLKTKNLFIAQDDLP--ELEEGQYYYHELMNCTVYNEKKENLGEVVD 115
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA +L +K + +FL+PF +++VN ++I+I
Sbjct: 116 ILETGANLVLRVK-SKNTSFLLPFVPAFIVDVNKDTHEIII 155
>gi|183601833|ref|ZP_02963202.1| probable 16S rRNA-processing protein rimM [Bifidobacterium animalis
subsp. lactis HN019]
gi|241190324|ref|YP_002967718.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195730|ref|YP_002969285.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218718|gb|EDT89360.1| probable 16S rRNA-processing protein rimM [Bifidobacterium animalis
subsp. lactis HN019]
gi|240248716|gb|ACS45656.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250284|gb|ACS47223.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178045|gb|ADC85291.1| RimM [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793311|gb|ADG32846.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis V9]
Length = 219
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 34/185 (18%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDN-----RELRILKMYRK 56
+L+ + IG GL GEV ++ Y ++P R+ VLY+ ++ R +
Sbjct: 16 ELLRVCRIGKAQGLKGEVSVELYTDDP--HARFAPGEVLYARESAADALRPYTVAAARTF 73
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF------- 109
R+ F G+D+ ++A LR+ LY + Q EL++DEF+ DL +E +
Sbjct: 74 KNRWYVRFEGVDDRNAAEALRNTVLYGEPQ-----ELDDDEFYPKDLLGLEVYLESEVSA 128
Query: 110 -----DRQGKYW-----GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
+G + G+V V GA +L+I+ + FL+PF + V EVNL+E
Sbjct: 129 ANADDAPEGAEFEFTDLGKVVDVIE-GAQWLLKIRMPNREAFLLPFVEALVPEVNLEEGY 187
Query: 160 ILIDP 164
+ +DP
Sbjct: 188 LTVDP 192
>gi|145296016|ref|YP_001138837.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum R]
gi|166226437|sp|A4QFB9|RIMM_CORGB RecName: Full=Ribosome maturation factor rimM
gi|140845936|dbj|BAF54935.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 171
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVL-------YSNDNRELRILKMYRKNKRFIATFSGID 68
+HG+ GEV ++ ++P D+ R+ + + L I R + F+ +
Sbjct: 15 SHGIRGEVVVELSTDDP-DI-RFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVP 72
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + +A +DE+ +ED F++ +LE + +G+ G+V GV + AG
Sbjct: 73 DRTAADSLRGTRFFAA--PLEDED-DEDGFYDHELESLRVI-HEGEDIGEVTGVMHGPAG 128
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
ILE++ T K LIPF V EV+L+E I P
Sbjct: 129 EILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITP 164
>gi|170725616|ref|YP_001759642.1| 16S rRNA-processing protein RimM [Shewanella woodyi ATCC 51908]
gi|238688673|sp|B1KI69|RIMM_SHEWM RecName: Full=Ribosome maturation factor rimM
gi|169810963|gb|ACA85547.1| 16S rRNA processing protein RimM [Shewanella woodyi ATCC 51908]
Length = 176
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ IG++HG+ G + I +Y + + Y + + RE+++ + + K +A+
Sbjct: 8 VVLGKIGSSHGIKGWLKITTYTESVEGIFDYSPWLIKEQGEWREVKVTQWRFQGKAVVAS 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ + +EL EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVETRDQAQMLTNCEIAVSAEQM--QELPEDEFYWRDLIGCEVTNTKGYNMGKVQEIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ VLEVNL E +IL+D
Sbjct: 126 ETGSNDVLLVKANAKDGFGKAERMIPFVTEQFVLEVNLTEKQILVD 171
>gi|172057908|ref|YP_001814368.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
gi|229564322|sp|B1YIM5|RIMM_EXIS2 RecName: Full=Ribosome maturation factor rimM
gi|171990429|gb|ACB61351.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
Length = 169
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFI-ATF 64
+A I THGL GE+ + + + P N L SN ++ YRK+K+FI TF
Sbjct: 6 VAKIANTHGLKGELKLLASTDFPEQRFKVGNEVFLESNGIYTPFMISSYRKHKQFIMVTF 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ +I+ + + LKLY + +EL E EF+ ++ FD + + G V +
Sbjct: 66 KGMQHINDVEKYKGLKLYVHPEAL--QELGEHEFYYHEIIGCTVFDGEDEI-GVVSEILE 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
GA + IK +K LIP+ + V ++++ +I I P+
Sbjct: 123 TGANDVWTIKRPGKKDVLIPYIEQVVASIDVEAKRIQITPLPG 165
>gi|326388658|ref|ZP_08210251.1| 16S rRNA processing protein RimM [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206909|gb|EGD57733.1| 16S rRNA processing protein RimM [Novosphingobium nitrogenifigens
DSM 19370]
Length = 163
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ +D+ V +A + HG+ G+V + + L RY ++ L+ K +
Sbjct: 1 MSIDRPVTLAAVIGAHGVTGDVRLKLFGEGVAALKRYKAFNGGTLTPVSLRDDGKGGA-L 59
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F+ + +A +LR L R L E E+++ DL + +G+ G
Sbjct: 60 ARFAEAGDRTAAEKLRGTALTVPRSALP--PLAEGEYYHADLIGLAVVSGEGEALGTCVA 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
V NFGAG +LEI+ K F++P AVLE
Sbjct: 118 VDNFGAGDVLEIRRPDGKAFMVPMRPEAVLE 148
>gi|19553253|ref|NP_601255.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|62390889|ref|YP_226291.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|24418639|sp|Q8NNX5|RIMM_CORGL RecName: Full=Ribosome maturation factor rimM
gi|21324822|dbj|BAB99445.1| RimM protein, required for 16S rRNA processing [Corynebacterium
glutamicum ATCC 13032]
gi|41326228|emb|CAF20390.1| RIMM PROTEIN (16S RRNA PROCESSING PROTEIN) [Corynebacterium
glutamicum ATCC 13032]
Length = 171
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVL-------YSNDNRELRILKMYRKNKRFIATFSGID 68
+HG+ GEV ++ ++P D+ R+ + + L I R + F+ +
Sbjct: 15 SHGIRGEVVVELSTDDP-DI-RFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVP 72
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + +A +DE+ +ED F++ +LE + +G+ G+V GV + AG
Sbjct: 73 DRTAADSLRGTRFFAA--PLEDED-DEDGFYDHELEGLRVI-HEGEDIGEVTGVMHGPAG 128
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
ILE++ T K LIPF V EV+L+E I P
Sbjct: 129 EILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITP 164
>gi|255003608|ref|ZP_05278572.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str. Puerto
Rico]
gi|255004737|ref|ZP_05279538.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Virginia]
Length = 166
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK-RFIATFS 65
+VL+ + HG+ G V + ++ +P ++ Y ++ + + + IA F
Sbjct: 1 MVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADSVIAKFD 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + + +LR +LY R L+EDEF+ +L M+ G +G + + NF
Sbjct: 61 GLSSRTESEKLRGKRLYVSRSSLP--RLQEDEFYENELIGMDAKLEDGTAYGVISAILNF 118
Query: 126 GAGSILEIKNTMEKTFLIPFTK--FAVLEV 153
G+ I+E+ + K ++PF++ F V++V
Sbjct: 119 GSCDIIELSTSTGKVVMVPFSRSTFPVVDV 148
>gi|305681419|ref|ZP_07404226.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
gi|305659624|gb|EFM49124.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
Length = 169
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 17 HGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE---LRILKMYRKNKRFIATFSGIDN 69
HG+ GEV +D + P D+ RY VL+ + L + R + TF + +
Sbjct: 14 HGIRGEVVVDPTTDEP-DI-RYAPGTVLHGKQGKREHTLTVAHARPHQGRLLVTFDEVPD 71
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+A LR + +A++ D D+E + F++ DL + +G G V GV + AG+
Sbjct: 72 RTAAESLRGTQFWAEQLDIDDDE---EGFYDHDLTGLRVI-HEGAEIGTVTGVMSGPAGT 127
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
ILE++ K L+PF V EV+L+ I P
Sbjct: 128 ILEVELAGGKQALVPFVFDIVPEVDLEAGTCTITP 162
>gi|23335825|ref|ZP_00121057.1| COG0806: RimM protein, required for 16S rRNA processing
[Bifidobacterium longum DJO10A]
gi|189439917|ref|YP_001954998.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|189428352|gb|ACD98500.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|291517401|emb|CBK71017.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum F8]
Length = 204
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEADDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|209573748|sp|B3DTN1|RIMM_BIFLD RecName: Full=Ribosome maturation factor rimM
Length = 199
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 67 ILKLEGVDDRNAAEALNGVELYGEADDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 125
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 126 GQVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 185
Query: 159 KILIDP 164
+ +DP
Sbjct: 186 YLTLDP 191
>gi|213691294|ref|YP_002321880.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522755|gb|ACJ51502.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457361|dbj|BAJ67982.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 204
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGEAEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVVNVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQ 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|48474469|sp|Q8G7F9|RIMM_BIFLO RecName: Full=Ribosome maturation factor rimM
Length = 202
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 67 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 125
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 126 GQVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 185
Query: 159 KILIDPIAAGLNNTTM 174
+ +DP + M
Sbjct: 186 YLTLDPPGGLIPGCGM 201
>gi|226939294|ref|YP_002794365.1| 16S rRNA-processing protein RimM [Laribacter hongkongensis HLHK9]
gi|226714218|gb|ACO73356.1| RimM [Laribacter hongkongensis HLHK9]
Length = 168
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDN-RELRILKMYRKN 57
+K LV+M + G+ G V I + YA+ D + + D+ +E R+++ +
Sbjct: 1 MKTQDLVVMGYVSGAFGVRGWVRIQADTEYADGLFDYPTWWIGREDSWQEYRVVEGKAQP 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +A G+D+ A LR ++ R E ++EF+ DL M + G +G
Sbjct: 61 KGVVAQLEGVDDRDVACALRGCEVAIPRSALP--ETGDNEFYWADLIGMAVSNPAGTAFG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L +++ ++T LIPF K +L+V+LQ ++ +D
Sbjct: 119 VVDSLMQTGANDVLVVRDGKQQT-LIPFVKAFILDVDLQARRLTVD 163
>gi|23464908|ref|NP_695511.1| Rim-like protein involved in efficient processing of 16S rRNA
[Bifidobacterium longum NCC2705]
gi|23325500|gb|AAN24147.1| possible Rim-like protein involved in efficient processing of 16S
rRNA [Bifidobacterium longum NCC2705]
Length = 207
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQ 190
Query: 159 KILIDPIAAGLNNTTM 174
+ +DP + M
Sbjct: 191 YLTLDPPGGLIPGCGM 206
>gi|84498357|ref|ZP_00997154.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
gi|84381857|gb|EAP97740.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
Length = 183
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSND-------NRELRI 50
M + +L+A IG HGL GEV + ++ ++P RYV ++ + R L +
Sbjct: 1 MPRSSNALLVARIGKPHGLRGEVTVQTHTDDP--EARYVPGTVFDTEAQPGTGVPRTLTV 58
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETF 109
+ ++ F+ I + A LR +L+ + + E +ED+ F+ DL +
Sbjct: 59 STARLHRQIWLLGFAEIPDRTGAESLRGTQLFLDPDEADEVESDEDDGFYEHDLVGLAVQ 118
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
D G G+V G+ +LE++ T + L+PF + V E++++ +++D AGL
Sbjct: 119 DPSGAVLGEVTGLVLGAVQDLLEVRLTNRRDVLVPFVEAIVTEIDIEAGHVVVD-APAGL 177
>gi|148555570|ref|YP_001263152.1| 16S rRNA processing protein RimM [Sphingomonas wittichii RW1]
gi|209573622|sp|A5V9P8|RIMM_SPHWW RecName: Full=Ribosome maturation factor rimM
gi|148500760|gb|ABQ69014.1| 16S rRNA processing protein RimM [Sphingomonas wittichii RW1]
Length = 157
Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+ +++A I HGL GEV + + D+ Y R + + +A F
Sbjct: 4 DRPIVLAAIIGAHGLQGEVRLKLFTE---DMGAYRTLDGAGRSFTLKTIRPGPNGAVARF 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I + ++A LR +L R L E+++ DL + G G V +
Sbjct: 61 AEIGDRNAAEALRGTELSVPRSALP--PLAPGEYYHVDLIGLPCL-VDGAPVGVAAMVED 117
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
FGAG +LEI+ K F++P K V ++ +++LIDP
Sbjct: 118 FGAGDVLEIEKPDGKRFMVPVAK----AVTIEPDRLLIDP 153
>gi|222100125|ref|YP_002534693.1| 16S rRNA-processing protein rimM [Thermotoga neapolitana DSM 4359]
gi|254797769|sp|B9K8P4|RIMM_THENN RecName: Full=Ribosome maturation factor rimM
gi|221572515|gb|ACM23327.1| 16S rRNA-processing protein rimM [Thermotoga neapolitana DSM 4359]
Length = 176
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR---ELRILKMYRKN 57
+++ + + + THGL GEV Y N+ +L+ VLY+ + + L + + R N
Sbjct: 9 INERIAVGKVVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNREKKVFYNLSVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID + +A +++ +++ K ++ L+ DE++ ++ E + G+ G
Sbjct: 69 KLFLIKFETIDTVEAAEKIKGCEVFIKYEELPP--LQNDEYYFYEILGCEVYYESGECVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+V + G+ +L +K +T LIP K V+E+ E KI++
Sbjct: 127 KVVDIIETGSNDVLVVKKKNRET-LIPMIKDCVVEIKKPEKKIVV 170
>gi|163750614|ref|ZP_02157851.1| 16S rRNA-processing protein [Shewanella benthica KT99]
gi|161329609|gb|EDQ00600.1| 16S rRNA-processing protein [Shewanella benthica KT99]
Length = 176
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ + K +A+
Sbjct: 8 VVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQGKAVVAS 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ Q K L EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVETRDQAQILTNCEIAVTPQQMKT--LPEDEFYWRDLIGCEVVNTKGYNMGKVQEIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ ++EVNL E +I +D
Sbjct: 126 ETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLAEKQITVD 171
>gi|242373531|ref|ZP_04819105.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
gi|242348894|gb|EES40496.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
Length = 167
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF- 60
V + I THG+ GEV + S N+ R+ ++ N+N + YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEVKVKS--NSDFTATRFQPGENLIVKHNNNDIQYTIASYRIHKGFH 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F GI+NI+ L+ LY +R D +D EL+E E++ +D+ FD G+V
Sbjct: 61 MLKFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEYYYSDIIGCTVFDDNNTPIGRVI 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 120 NIFETGANDVWVVKG--DKEYLIPYIEDVVKDIDVEGKSIRITPMEGLLD 167
>gi|296453527|ref|YP_003660670.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
gi|296182958|gb|ADG99839.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
Length = 204
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS+D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSHDGETEYIVEGSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G
Sbjct: 72 ILKLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPA 130
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V +++L+E
Sbjct: 131 GQVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQ 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|54026126|ref|YP_120368.1| 16S rRNA-processing protein RimM [Nocardia farcinica IFM 10152]
gi|59798616|sp|Q5YS37|RIMM_NOCFA RecName: Full=Ribosome maturation factor rimM
gi|54017634|dbj|BAD59004.1| putative 16S rRNA processing protein [Nocardia farcinica IFM 10152]
Length = 174
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ ++P L + S + RE + + R
Sbjct: 3 LVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ + +G+D+ +A LR + + + DEF++ +LE + D G G V
Sbjct: 63 LVSLAGVDDRSAADALRGTLFVVDSAELPPSD-DPDEFYDHELEGLSVRDTAGAVLGTVT 121
Query: 121 GVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
V + AG +L ++ + + LIPF V V++ E ++IDP
Sbjct: 122 EVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDP 166
>gi|294139728|ref|YP_003555706.1| 16S rRNA processing protein RimM [Shewanella violacea DSS12]
gi|293326197|dbj|BAJ00928.1| 16S rRNA processing protein RimM [Shewanella violacea DSS12]
Length = 177
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ + K +A+
Sbjct: 9 VVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQGKAVVAS 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ Q E L EDEF+ DL E + +G G+V +
Sbjct: 69 LEGVETRDQAQMLTNCEIAVTLQQM--ETLPEDEFYWRDLIGCEVVNTKGYNMGKVQEIV 126
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ ++EVNL E +I +D
Sbjct: 127 ETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLTEKQITVD 172
>gi|311739730|ref|ZP_07713565.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305546|gb|EFQ81614.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 165
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRIL--KMYRKNK-RF 60
+++ + +HG+ GEV +++ + P R+ VL+ ++ L K R +K R
Sbjct: 3 LMIGRVIKSHGVKGEVVVEATTDEP--EVRFAVGEVLHGTQGKKEHTLTIKAVRSHKGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF I + A LR K +A D D D F++ +LE + +G+ G+V
Sbjct: 61 LVTFEEIKDRTVADSLRGTKFFAAPLDSDD-----DGFYDHELEGLRVL-LEGEEIGEVT 114
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G+ +LEIK K LIPF V EVNL+ IDP
Sbjct: 115 SVIHGGSQDLLEIKLDNNKEALIPFVHAIVPEVNLEAGTCTIDP 158
>gi|269219639|ref|ZP_06163493.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 848
str. F0332]
gi|269210881|gb|EEZ77221.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 848
str. F0332]
Length = 192
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYRKNK---RFIATFS 65
+A IG HGL GE+ +D + P L + D +E L + R + A FS
Sbjct: 5 VAVIGAPHGLKGELRLDVRTDQPERRLGIGAMLETDPQEAGPLTVARTREYKGAIYAMFS 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ A LR +KL + +D+ +EED F+ +L +E D +G G++ G+ F
Sbjct: 65 ECTDRTMAERLRGVKLTVETD--EDDYVEEDAFYEHELVGLEVLDPEGYELGRIIGLETF 122
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A +L ++ +PF + V EV+L +N +++
Sbjct: 123 PAQDMLVVREPDGDVARVPFVREIVTEVDLDDNCVVV 159
>gi|146281576|ref|YP_001171729.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri A1501]
gi|166226469|sp|A4VIT6|RIMM_PSEU5 RecName: Full=Ribosome maturation factor rimM
gi|145569781|gb|ABP78887.1| 16S rRNA processing protein [Pseudomonas stutzeri A1501]
Length = 178
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D+LV++ I + HG+ G+V + S+ + N +D R+ L D +++ ++K + K
Sbjct: 9 DELVVIGKIVSVHGVRGDVKVYSFTDPIDNLLDYRRWTLRRGDEVKQVELVKGRLQGKIL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A+ G+ + A D ++ R + L++ E++ L+ ++ ++ G+ GQV
Sbjct: 69 VASLKGLTDREVARTYADFEICVPRSELP--ALDDGEYYWYQLQGLKVLNQAGQLLGQVD 126
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K ++ L+P+T VL+V+L ++ +D
Sbjct: 127 HLLETGANDVLVVKPCAGSLDDRERLLPYTDHCVLKVDLDSGEMQVD 173
>gi|162148861|ref|YP_001603322.1| 16S rRNA-processing protein rimM [Gluconacetobacter diazotrophicus
PAl 5]
gi|189040842|sp|A9HS64|RIMM_GLUDA RecName: Full=Ribosome maturation factor rimM
gi|161787438|emb|CAP57033.1| putative 16S rRNA-processing protein rimM [Gluconacetobacter
diazotrophicus PAl 5]
Length = 188
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG- 66
+LM +G HG+ G V + SYA P DL Y ++++ ++ L+ + +G
Sbjct: 6 ILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELRDAAGQ 65
Query: 67 -IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYWGQVCGVY 123
+ +A + + +LY R E ++DEF+ TDL M+ QG G+V V+
Sbjct: 66 PLSGRDAAQAMVNRRLYVARTSLP--EPDQDEFYFTDLIGMDV-RAQGTDAPLGRVLVVH 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
++GAG LE+ ++PFT+ V++ +I
Sbjct: 123 DYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRI 159
>gi|291456064|ref|ZP_06595454.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213]
gi|291382473|gb|EFE89991.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213]
Length = 204
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ +A IG GL GEV + Y ++P R+ VLYS D I++ R K R+
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDP--EWRFEPDSVLYSQDGETEYIVENSRTFKDRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G D+ +A L ++LY + D +E LE DE++ DL +E +G G
Sbjct: 72 ILKLEGTDDRTAAEALNGVELYGEADD-AEEMLEADEWYPKDLIGLEARLSEGNGLGLPA 130
Query: 121 G--------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G V + A S+L+I+ + +EKT L+PF + V E++L E
Sbjct: 131 GQVVGKVVDVVDSPAQSLLKIRLVEPVVTGQDSKGEDVIEKTALVPFVEALVPEIDLDEQ 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|257068183|ref|YP_003154438.1| 16S rRNA processing protein RimM [Brachybacterium faecium DSM 4810]
gi|256559001|gb|ACU84848.1| 16S rRNA processing protein RimM [Brachybacterium faecium DSM 4810]
Length = 194
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 8/195 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYR 55
M LD V++ATIG HGL GEV + + P + + V + R L +
Sbjct: 1 MSTLD--VIVATIGRAHGLRGEVALTLRTDQPEERLQPGTAFEVEVAGQVRALTVQSTRM 58
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ R+ F +D+ A+ LR + L ++ E + D ++ L+ + G+
Sbjct: 59 QQDRWYVRFEEVDDRTGAASLRGIDLVLSLDAEQEAEEDPDAWYPAQLKGLSVRHVDGRE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G V GV ++ A +L ++ + +P + V EV+L++ ++ DP GL + +
Sbjct: 119 LGTVAGVDHYPAQDLLVVRTPDRRRVQLPLVEELVPEVDLEQGVVIADP-PGGLFDALPE 177
Query: 176 NPQYDCPLDSAGKKS 190
+ Q P SA +
Sbjct: 178 DEQGPEPETSAPPRG 192
>gi|304320474|ref|YP_003854117.1| putative 16S rRNA processing protein [Parvularcula bermudensis
HTCC2503]
gi|303299376|gb|ADM08975.1| putative 16S rRNA processing protein [Parvularcula bermudensis
HTCC2503]
Length = 187
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR--FI 61
D++V++ HG+ GE + S+ D+ Y LY+ + R L + R+ K F+
Sbjct: 7 DRMVVVGQFAGPHGVRGEFKLRSFTERAEDIVAYGPLYTEEGRIL-TASLLREVKPGLFL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A + A+ + KL R+ + EDE++ DL + G+ G+V
Sbjct: 66 ARAPEVKTPEEAAAFKGAKLSVPRRALPAPD--EDEYYIEDLIGLTALTPSGEVVGRVRQ 123
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDP 164
V ++GAG I+E+ K L+PF + V V+ +++++DP
Sbjct: 124 VADYGAGPIIELAPVSGKGALLLPFDRTHVPTVDFGASRLIVDP 167
>gi|225022024|ref|ZP_03711216.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
gi|224945221|gb|EEG26430.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
Length = 169
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 17 HGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE---LRILKMYRKNKRFIATFSGIDN 69
HG+ GEV +D + P D+ RY VL+ + L + R + TF + +
Sbjct: 14 HGIRGEVVVDPTTDEP-DI-RYAPGTVLHGKQGKREYTLTVAHARPHQGRLLVTFDEVPD 71
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+A LR + +A++ D D+E + F++ DL + +G G V GV + AG+
Sbjct: 72 RTAAESLRGTQFWAEQLDIDDDE---EGFYDHDLTGLRVI-HEGAEIGTVTGVMSGPAGT 127
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
ILE++ K L+PF V +V+L+ I P
Sbjct: 128 ILEVELAGGKQALVPFVFDIVPDVDLEAGTCTITP 162
>gi|126724933|ref|ZP_01740776.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2150]
gi|126706097|gb|EBA05187.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2150]
Length = 102
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A L+ ++LYA R+ D L ++E+++ DL M D GK G+V V N GA +L
Sbjct: 6 QADALKGVRLYAPREALPD--LPDEEYYHADLIGMIVLDTGGKELGKVSDVMNHGADDLL 63
Query: 132 EIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
E++ ++ LIPFT+ V V++ +I+IDP
Sbjct: 64 EVRGKGIKDGALIPFTREIVPTVDMASGRIIIDP 97
>gi|145224752|ref|YP_001135430.1| 16S rRNA-processing protein [Mycobacterium gilvum PYR-GCK]
gi|315445082|ref|YP_004077961.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
gi|189040844|sp|A4TE78|RIMM_MYCGI RecName: Full=Ribosome maturation factor rimM
gi|145217238|gb|ABP46642.1| 16S rRNA processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315263385|gb|ADU00127.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
Length = 173
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS---------NDNRELRILKMYRKNK 58
+++ + HG+ GE+ ++ ++P R+V + RE I +
Sbjct: 3 LVVGRVAKAHGVTGELTVEVRTDDP--QGRFVRGAVLRGRPPRGGAEREYVIESVRTHGD 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + F G+ + +A LR D E + DEF++ LE + G G+
Sbjct: 61 RLLVRFDGVADRDAADALRGTVFLVDSADLPPIE-DPDEFYDHQLEGLTVITTSGGEVGK 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V V + AG +L ++ + L+PF VL V+L + I IDP
Sbjct: 120 VAEVLHTAAGELLAVRTADDTEVLVPFVSAIVLSVSLDDQLITIDP 165
>gi|313904184|ref|ZP_07837563.1| 16S rRNA processing protein RimM [Eubacterium cellulosolvens 6]
gi|313470986|gb|EFR66309.1| 16S rRNA processing protein RimM [Eubacterium cellulosolvens 6]
Length = 170
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSN---DNRELRILKMYRKN 57
+++ + + I TTHG+ GEV + ++ +DL+ +L N +N E+ +K ++
Sbjct: 1 MEQYLKIGVITTTHGVRGEVKVFPTTDDAGRFLDLDEVMLCKNGKTENHEIENVKFFKN- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ I SGI +++ A R+ +++ R++ D LE+DE++ DL + ++ G +G
Sbjct: 60 -QVILKLSGITSMNDAELYRNWEIFIPREEGVD--LEDDEYYQADLIGLTVYNEDGSEFG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + GA + +K LIP K +++VN++E + +
Sbjct: 117 VLKEIIETGANDVYVVKTQTHGEVLIPAIKDCIIDVNIEEGHMTV 161
>gi|30249636|ref|NP_841706.1| hypothetical protein NE1672 [Nitrosomonas europaea ATCC 19718]
gi|48474816|sp|Q82U37|RIMM_NITEU RecName: Full=Ribosome maturation factor rimM
gi|30138999|emb|CAD85583.1| RimM [Nitrosomonas europaea ATCC 19718]
Length = 169
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILK---MYRKNKRFI 61
+V++ I HG+ G++ + + L Y ++ S D + +I++ + + I
Sbjct: 1 MVVLGRIAGPHGIRGQIKVIPFTEYVDGLMEYPVWCLSRDEKNWQIVRPATFFIHDNLLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELE-EDEFFNTDLEEMETFDRQGKYWGQVC 120
T +G + SASEL+ L + R + ED ++ TDL + + QG+ G V
Sbjct: 61 VTLTGYSDRTSASELKGLLVAVPRSQLPPLSKDGEDGYYWTDLIGISVVNMQGEPLGTVA 120
Query: 121 GVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ GA +L ++ + K LIPF + +V+L+ +I +D
Sbjct: 121 GLFETGANDVLRVRLSGSSKDELIPFVDQVIRQVDLESRQITVD 164
>gi|210622536|ref|ZP_03293229.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
gi|210154171|gb|EEA85177.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
Length = 172
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE--LRILKMYRKNKRFIAT 63
+ I T GL G+V + + D+ R+ Y +RE + + K I
Sbjct: 10 VGKIVKTQGLKGDVRVYPTTD---DIYRFDYLEEFYVGKDRENPWEVEDVRYKGNLVIMK 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID + A +L +Y R + ELEE EFF D+ M+ + G+ G + V
Sbjct: 67 IKGIDRVEEAEKLVGKDIYVSRDE--SFELEEGEFFIADMIGMDVYTVSGEKVGVLKEVL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ A + IKN K +LIP V E++++E+K++IDPI L++
Sbjct: 125 QYSANDVYVIKNEEGKEYLIPAVMKFVPEIDIEEDKMIIDPIKGMLDD 172
>gi|237748992|ref|ZP_04579472.1| ribosome maturation factor rimM [Oxalobacter formigenes OXCC13]
gi|229380354|gb|EEO30445.1| ribosome maturation factor rimM [Oxalobacter formigenes OXCC13]
Length = 180
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
L+ + I +G+ G I Y A + + + L D +++++ R+ +A
Sbjct: 14 LIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLDLPDMHNVKVMQARRQGDEIVAH 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FSGIDN +A LR + R F EL EDE++ DL + F+ +G G V G+
Sbjct: 74 FSGIDNREAAEALRGSVICISRSRFP--ELPEDEYYWVDLIGLSVFNLRGDALGTVRGLI 131
Query: 124 NFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L++ + LIPF + +V+ + KI +D
Sbjct: 132 DNGAHPVLQVAVEDSENKVRELLIPFVDQFIDDVDREGGKITVD 175
>gi|167749744|ref|ZP_02421871.1| hypothetical protein EUBSIR_00711 [Eubacterium siraeum DSM 15702]
gi|167657227|gb|EDS01357.1| hypothetical protein EUBSIR_00711 [Eubacterium siraeum DSM 15702]
gi|291529953|emb|CBK95538.1| 16S rRNA processing protein RimM [Eubacterium siraeum 70/3]
gi|291556360|emb|CBL33477.1| 16S rRNA processing protein RimM [Eubacterium siraeum V10Sc8a]
Length = 170
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ I T GL GEV + Y ++ + + + D +EL + K + GI
Sbjct: 8 IGKIVATQGLGGEVRVQYYCDSADVICSFDRLFLGKDKQELEVEKARPHKTLAVLKLGGI 67
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFG 126
DN+ A + LY R D EL E F DL +E D GK +G+V +Y G
Sbjct: 68 DNVDEAKTIVGKMLYMDRDDV---ELPEGVNFIQDLIGLEVRDADTGKVYGKVTDIYQHG 124
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
A + E+K K + P +LE N+ + ++I P+
Sbjct: 125 AADVYELKTPDGKELMFPAIPEVLLEKNIDDGYLVIRPL 163
>gi|315638649|ref|ZP_07893823.1| 16S rRNA processing protein RimM [Campylobacter upsaliensis JV21]
gi|315481273|gb|EFU71903.1| 16S rRNA processing protein RimM [Campylobacter upsaliensis JV21]
Length = 176
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIA 62
+ K VL+A IG + GL G + + + ++ P + ++ D REL I K Y KN++ +
Sbjct: 1 MSKFVLVAKIGRSVGLRGYLKLHNLSDFPSQFQKNLTFFTKDKRELAI-KDYDKNRQSV- 58
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F +++ A EL +L+LY + ++ +L++DEFF D+ E D Q GQV
Sbjct: 59 LFYTYESLEKAKELVNLELYQSIEKTRELCKLKKDEFFYFDIIGCEVRDEQ-IILGQVQD 117
Query: 122 VYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKIL 161
+ G G + EIK+ K F IP+ +L++++++ +IL
Sbjct: 118 ILESGGGYLFEIKSDEKLTAQGFSKIFFIPYIDKYILQIDIEKKQIL 164
>gi|223044254|ref|ZP_03614291.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
gi|222442404|gb|EEE48512.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
Length = 167
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
V + I THG+ GE+ + S ++ P + N V ++N++ E + YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRFQPGE-NLIVKHNNEDIEYTV-SSYRIHKGFH 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F GI+NI+ L+ LY +R D +D EL+E EF+ +D+ FD G+V
Sbjct: 61 MLKFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEFYYSDIIGCTVFDDTDTPIGRVI 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 120 NIFETGANDVWVVKG--DKEYLIPYIEDVVKDIDVEGRSIKITPMKGLLD 167
>gi|262038555|ref|ZP_06011924.1| 16S rRNA processing protein RimM [Leptotrichia goodfellowii F0264]
gi|261747424|gb|EEY34894.1| 16S rRNA processing protein RimM [Leptotrichia goodfellowii F0264]
Length = 169
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS-YANNPIDLNRYVLYSNDNRE--LRILKMYRKN-KR 59
++ LV + TI TH L G V I+S + + + VL ++++ L + K+ R N K+
Sbjct: 1 MENLVNIGTITGTHHLTGNVKINSIFQETDLIIGEKVLLEKEDKKKILTVKKIKRLNEKK 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA F IDNI SA EL ++ +R E E+EF+ DL +E F+ GK G V
Sbjct: 61 VIAEFEEIDNIDSAKELNGFQIKIRRDLLP--EKNENEFYLKDLLGVEVFEGNGKI-GDV 117
Query: 120 CGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V A +IL I++T+ +K ++P V ++ NKI ++ I
Sbjct: 118 IDVMETAAHNILIIEDTVNKKEIMVPLVDEFVKNIDFANNKIEVELIEG 166
>gi|332185778|ref|ZP_08387525.1| 16S rRNA processing protein RimM [Sphingomonas sp. S17]
gi|332014136|gb|EGI56194.1| 16S rRNA processing protein RimM [Sphingomonas sp. S17]
Length = 164
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
V +A I HG+ GEV + +A D++ Y + ND L + + IA F+ +
Sbjct: 13 VTLAVIIGAHGITGEVRLKVFAE---DVSAYRAF-NDG-ALTLKSAREGSNGVIARFAEV 67
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ ++A LR +L R LEE E+++ D+ + G+ G V + NFGA
Sbjct: 68 TDRNAAEALRGTELTVPRSALPP--LEEGEYYHADIIGLPAIASDGEELGHVALIENFGA 125
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLE 152
G +LEI+ + F++P AV E
Sbjct: 126 GDVLEIERPDGRRFMVPMKVEAVPE 150
>gi|237667792|ref|ZP_04527776.1| 16S rRNA processing protein RimM [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|237656140|gb|EEP53696.1| 16S rRNA processing protein RimM [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 166
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
KL + I THG+ GEV + + R E+ IL + + R I
Sbjct: 4 KLFKIGQIINTHGIKGEVKVYPLTEDVNKFKRLKTVLVGGVEMNILGVKFQKDRVILKIE 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID ++ A + + R+ K+ EL ED ++ +DL+E +D GK G++ V +
Sbjct: 64 GIDTMNDAETYKQKYIEIPRE--KEPELPEDTYYVSDLKECIVYDTDGKELGKIFDVIST 121
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ IK K LIP + VL +++ E KI+I P+
Sbjct: 122 RNNDVYWIKEP--KELLIPVLRDIVLSIDINEKKIVIRPVG 160
>gi|57239611|ref|YP_180747.1| 16S rRNA-processing protein RimM [Ehrlichia ruminantium str.
Welgevonden]
gi|58579600|ref|YP_197812.1| putative 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Welgevonden]
gi|58617654|ref|YP_196853.1| putative 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Gardel]
gi|75356891|sp|Q5FGP6|RIMM_EHRRG RecName: Full=Ribosome maturation factor rimM
gi|81352715|sp|Q5H9Z8|RIMM_EHRRW RecName: Full=Ribosome maturation factor rimM
gi|57161690|emb|CAH58620.1| putative 16S rRNA processing protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58417266|emb|CAI28379.1| Probable 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Gardel]
gi|58418226|emb|CAI27430.1| Probable 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Welgevonden]
Length = 172
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFIATF 64
+ + I + HG+ G V I ++ NP + Y ++ E+ I+++ KN IA
Sbjct: 5 FICLGIITSPHGIKGHVKIKTFTENPQNFTSYGKLTDGITTYEINIIQVVSKN-TIIAKI 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I + +A LR+ KL+ ++ + L E+EF+++DL ++ +G + +YN
Sbjct: 64 NNITSRTNAELLRNKKLFIEKTKLPN--LIENEFYHSDLVGLQVILEDNNIFGTIKKIYN 121
Query: 125 FGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILI 162
FG+ I+EI +K+ ++PF+K +N +E +++
Sbjct: 122 FGSCDIIEILLYNSKKSTMLPFSKDIFTHINTKERYVIL 160
>gi|314933417|ref|ZP_07840782.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
gi|313653567|gb|EFS17324.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
Length = 167
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR-ILKMYRKNKRF-IA 62
V + I THG+ GE+ + S + ++ ++N +L+ + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRFQPGENLIVKHNNEDLQYTVSSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ LY +R D +D EL+E E++ +D+ FD G+V +
Sbjct: 63 KFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEYYYSDIIGCTVFDDTDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVKG--DKEYLIPYIEDVVKDIDVEGKSIKITPMEGLLD 167
>gi|269120660|ref|YP_003308837.1| 16S rRNA processing protein RimM [Sebaldella termitidis ATCC 33386]
gi|268614538|gb|ACZ08906.1| 16S rRNA processing protein RimM [Sebaldella termitidis ATCC 33386]
Length = 167
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRK--NKRFI 61
+LV + TI TH LNG V + S + I + +L N++++L +K ++ NK+ I
Sbjct: 2 ELVNIGTITGTHHLNGAVKVTSIFQDTDVIISEKVLLEKNNDKKLCTVKSVKRINNKKLI 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
FS I NI+ A L ++ +R D E+ EED ++N DL M+ F+++ +Y G +
Sbjct: 62 VEFSEISNINDAKSLNGYQVKIRR-DLLPEKTEEDFYYN-DLLGMKVFEKE-EYLGDILD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
A IL + N+ + L+P V +++ + KI ++ I
Sbjct: 119 TMETAAHDILVVVNSDGREILVPMVDIFVKKIDFEAGKIEVELI 162
>gi|255325256|ref|ZP_05366362.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
gi|255297821|gb|EET77132.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
Length = 165
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRIL--KMYRKNK-RF 60
+++ + +HG+ GEV +++ + P R+ VL+ ++ L K R +K R
Sbjct: 3 LMIGRVIKSHGVKGEVVVEATTDEP--EVRFAVGEVLHGTQGKKEHTLTIKAVRSHKGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF I + A LR K +A D D D F++ +LE + +G+ G+V
Sbjct: 61 LVTFEEIKDRTVADSLRGTKFFAAPLDSDD-----DGFYDHELEGLRVL-LEGEEIGEVT 114
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G+ +LE++ K LIPF V EVNL+ IDP
Sbjct: 115 SVIHGGSQDLLEVELDNSKEALIPFVHAIVPEVNLEAGTCTIDP 158
>gi|160901806|ref|YP_001567387.1| 16S rRNA processing protein RimM [Petrotoga mobilis SJ95]
gi|209573586|sp|A9BF00|RIMM_PETMO RecName: Full=Ribosome maturation factor rimM
gi|160359450|gb|ABX31064.1| 16S rRNA processing protein RimM [Petrotoga mobilis SJ95]
Length = 185
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNREL---RILKMYRKN 57
LD + +A I +HG++GEV I + N +L +LY+ R ++L++ N
Sbjct: 8 LDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLN 67
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ GI ++ A ++ +++ ++D L +E++ ++ + E + G+Y G
Sbjct: 68 KFFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPS--LNSEEYYWYEILDSEVYYEDGEYVG 125
Query: 118 QVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + GA ++ IKN +K LIP T ++E+ ++ I++ I N T
Sbjct: 126 KVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYIIELKKEDKSIIVKKIEWYENGT 181
>gi|291545205|emb|CBL18314.1| 16S rRNA processing protein RimM [Ruminococcus sp. 18P13]
Length = 170
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 17 HGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASE 75
HGL G+V I + ++ L + LY D + ++ + F+GID A
Sbjct: 15 HGLRGDVKIQPWCDSAGFLCEFDTLYRADGTPMSVVSARAHKGMAVVRFAGIDTPEQAEA 74
Query: 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAGSILEIK 134
LR+ LY R D EL+ D +F DL ++ D G +G++ V GA + I+
Sbjct: 75 LRNTVLYMNRADV---ELDADTYFIRDLIGLQVLDADTGAVYGRLEEVLETGANDVYTIR 131
Query: 135 NTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
K L P V+E +L++ + I P+
Sbjct: 132 TPEGKQLLFPAIGDVVVETDLEQGIMRIRPL 162
>gi|209545390|ref|YP_002277619.1| 16S rRNA processing protein RimM [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533067|gb|ACI53004.1| 16S rRNA processing protein RimM [Gluconacetobacter diazotrophicus
PAl 5]
Length = 188
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG- 66
+LM +G HG+ G V + SYA P DL Y +++ ++ L+ + +G
Sbjct: 6 ILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALIDEHGQVWSLRWRGDGIAELRDAAGQ 65
Query: 67 -IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYWGQVCGVY 123
+ +A + + +LY R E ++DEF+ TDL M+ QG G+V V+
Sbjct: 66 ALSGRDAAQAMVNRRLYVARTSLP--EPDQDEFYFTDLIGMDV-RAQGTDAPLGRVLVVH 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
++GAG LE+ ++PFT+ V++ +I
Sbjct: 123 DYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRI 159
>gi|260437021|ref|ZP_05790837.1| 16S rRNA processing protein RimM [Butyrivibrio crossotus DSM 2876]
gi|292810330|gb|EFF69535.1| 16S rRNA processing protein RimM [Butyrivibrio crossotus DSM 2876]
Length = 170
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKM----YRK 56
++ L+ + I + HG+ GEV + ++P+ +L +L S+ RE+ L + ++K
Sbjct: 1 MEDLLRVGVITSPHGIAGEVKVYPTTDDPMRFKNLKECILKSS--REMLNLHVAGVKFQK 58
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N I F +NI+ + R +LY R++ +LEE E+F DL ++ D GK
Sbjct: 59 N-LVILKFKEFNNINEVEKYRQAELYVTREN--AVKLEEGEYFICDLIGLKVIDEFGKTI 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V GA + E+ K +L P K +L V+L E + + I GL
Sbjct: 116 GELTDVIQTGANDVYEVTTPERKKYLFPVIKECILNVDLDEGIVTVH-IMKGL 167
>gi|295109863|emb|CBL23816.1| 16S rRNA processing protein RimM [Ruminococcus obeum A2-162]
Length = 168
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
++ L+ + I TTHG+ GEV + ++ ++L YVL RELR L + KN RF
Sbjct: 1 MEDLLKVGVITTTHGVRGEVKVFPTTDDAERFLEL-EYVLLDT-GRELRRLDI--KNVRF 56
Query: 61 -----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
I F GIDNI+ + + L+ R++ +EL EDE++ DL+ + G
Sbjct: 57 FKNLVILKFDGIDNINDIEKYKGKDLWIPREEA--QELGEDEYYIADLQGLNVVLEDGTE 114
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+G + V GA + I + L+P K +L+V+L++N + +
Sbjct: 115 FGTLRDVMETGANDVYIIDSNEHGEVLLPAIKECILDVDLEKNTMTV 161
>gi|323489561|ref|ZP_08094788.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
gi|323396692|gb|EGA89511.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
Length = 171
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I THG+ GEV + S + P + + L++ D ++ ++K+ +R++K F +
Sbjct: 6 VGKIVNTHGIRGEVRVLSRTDFPEERFAVGTKLGLFTPDAKKPIMVKIASHRQHKNFELL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G NI+ ++ L D ELEE+ F++ ++ + +G+ G++ +
Sbjct: 66 TFEGYPNINDVEPFKESYLRIAEHDLT--ELEENAFYHHEILGCAVYSTEGQELGKITEI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + E+ K IP+T+ V EV++ E K++I+ I L+
Sbjct: 124 LETGANDVWEVTPEKGKKHYIPYTEEIVKEVDIDEKKVIIEVIEGLLS 171
>gi|300361926|ref|ZP_07058103.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
gi|300354545|gb|EFJ70416.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
Length = 173
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I + HGL GEV +++ + P + +R + ++D + I++ R++K+F + F
Sbjct: 7 VGKILSPHGLTGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVEATRRHKQFYLVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGVY 123
GID+I A ++R +LY D +EL E ++ D+ +D + G+ G + +
Sbjct: 67 EGIDDIDQAEKVRGKELYVAETD--QQELPEGSYYFKDILNCPVYDAKTGEKLGVLANIE 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA I EIK K+F IP + V V+L +I +
Sbjct: 125 TPGANDIWEIKPEHGKSFWIPNIESVVNNVDLANKRIEV 163
>gi|120403181|ref|YP_953010.1| 16S rRNA-processing protein RimM [Mycobacterium vanbaalenii PYR-1]
gi|166226458|sp|A1T754|RIMM_MYCVP RecName: Full=Ribosome maturation factor rimM
gi|119955999|gb|ABM13004.1| 16S rRNA processing protein RimM [Mycobacterium vanbaalenii PYR-1]
Length = 172
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVLYS---------NDNRELRILKMYRKNKRFIATFSG 66
HG+ GE+ +D ++P R+V + RE I + R + G
Sbjct: 11 AHGVTGELAVDVRTDDP--EGRFVAGAVLRGRPARGGAEREFVIESVRSHGDRMLIRLQG 68
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + +A LR + E + DEF++ LE M G+ G V V +
Sbjct: 69 VGDRDAADALRGTLFLVDSAELPPIE-DPDEFYDHQLEGMAVSTTGGQPVGTVAEVLHTA 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG +L +++ L+PF V+ V+L +N I IDP
Sbjct: 128 AGELLAVRDPDGAEVLVPFVSAIVVSVSLADNAIEIDP 165
>gi|317057389|ref|YP_004105856.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
gi|315449658|gb|ADU23222.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
Length = 172
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
++KL+ I + GL GEV + + + P L + LY + + + + +
Sbjct: 1 MNKLLEAGKIVSVFGLKGEVKVQPWCDTPDFLCEFDTLYYKSGTPVEVERARVQKNIVVM 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCG 121
G+D++ A ++R+ LY R+D EL ED +F DL ++ D GK +G +
Sbjct: 61 KIKGVDSVEEAQKIRNRVLYLDREDV---ELGEDTYFVQDLIGLKVIDLNSGKEYGVLTE 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V GA + IK+ K + IP + E +++ + I P+
Sbjct: 118 VSETGANDVYHIKSESGKMYYIPAIPSVIAETDVEGGVMKITPL 161
>gi|317129230|ref|YP_004095512.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
gi|315474178|gb|ADU30781.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
Length = 174
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRF-IAT 63
+ I THG+ GEV + S + P I YV D R + +RK+K+F + T
Sbjct: 7 VGKIVNTHGVRGEVRVISRTDFPEERYAIGNTLYVTSDTDVRTPVEITSWRKHKQFDLLT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+DN++ + + L + D D EL E EF+ ++ + + G+ G V +
Sbjct: 67 FKGLDNLNEVEKFKGSLLQIHQNDASD-ELSEGEFYYHEIIGSTVYLQSGEVLGHVKEIL 125
Query: 124 NFGAGSILEIKNTM--EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +++ +K LIP+ V +V+++ K++I P+ L+
Sbjct: 126 SPGANDVWVVQSNTKGKKDMLIPYIDDVVKQVDVKSKKVVIHPMEGLLD 174
>gi|254292891|ref|YP_003058914.1| 16S rRNA processing protein RimM [Hirschia baltica ATCC 49814]
gi|254041422|gb|ACT58217.1| 16S rRNA processing protein RimM [Hirschia baltica ATCC 49814]
Length = 193
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE-LRILKMYRKNKRFIATFS 65
LV++A IG HG+ G V + S+ D Y ++N + + K Y++NK +
Sbjct: 12 LVVVAQIGGAHGVRGHVRVRSFTVVAEDCFAYGPLLDENGDVIFTAKSYQENKDGFVVWP 71
Query: 66 GIDNIHSAS--ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
++N ++ + L+ R E EEDEF+ DL + G+ GQV V+
Sbjct: 72 -VENRQREEWMAMKGVLLHVPRNALP--EPEEDEFYFEDLIGSKVVHEDGRELGQVLNVH 128
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
NFGA +LE+K+ +++PFT + +V+++ + P
Sbjct: 129 NFGADDLLELKSPHGTDYMLPFTLEIIPKVDVKAQLLTAKP 169
>gi|300858744|ref|YP_003783727.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|300686198|gb|ADK29120.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302206451|gb|ADL10793.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
C231]
gi|302331007|gb|ADL21201.1| 16S rRNA-processing protein [Corynebacterium pseudotuberculosis
1002]
gi|308276693|gb|ADO26592.1| 16S rRNA-processing protein [Corynebacterium pseudotuberculosis
I19]
Length = 167
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI-LKMYRKNK-RFIA 62
+++ + +HG+ GEV ++ ++P + + +E R+ + R ++ R +
Sbjct: 3 LMIGRVVKSHGIKGEVAVEVTTDDPDIRFAVGEVLNGKQGKKEHRLTISTGRVHQGRLLI 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + +A LR + +A K+++ +E F++ +LE + ++G+ G+V GV
Sbjct: 63 KFEEIPDRTAADSLRGTQFFAA--PLKNDDGDEG-FYDHELEGLGVI-QEGEKIGEVTGV 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ AG ILE+K T K LIPF V EVNL+E I P
Sbjct: 119 MHGPAGEILEVKLTEGKQVLIPFVHAIVPEVNLEEGTCTITP 160
>gi|327441076|dbj|BAK17441.1| RimM protein required for 16S rRNA processing [Solibacillus
silvestris StLB046]
Length = 173
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-------NDNRELRI-LKMYRKNKRFI 61
+ I THG+ GE+ I S + + R+ + S +D + + + R++K FI
Sbjct: 6 VGRIVNTHGIRGELRILSTTD--FEEERFAVGSKLAAFKKDDKKPTWVTISSSRRHKNFI 63
Query: 62 -ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
TF G++NI+ ++ L ++ELE++E+++ ++++ E F +G+ G V
Sbjct: 64 LVTFEGMENINLVEPFKEGLLKVSMDQLAEDELEDNEYYHFEIKDCEVFSEEGELIGVVT 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA + E+K K IP+ + V ++N+ E KI+I
Sbjct: 124 DILETGANDVWEVKAQNGKKHYIPYIEDIVKDINVDEKKIII 165
>gi|189425509|ref|YP_001952686.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
gi|209573557|sp|B3E5S5|RIMM_GEOLS RecName: Full=Ribosome maturation factor rimM
gi|189421768|gb|ACD96166.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
Length = 176
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLY---SNDNRELRILKMYRKNKR 59
D L+ + I THG+ G++ + SY+ N + + VL + R++++ K + +
Sbjct: 6 DNLIAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTRQIQLKKAAYHSGK 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F+ T G D I A EL +L +R+ + DE++ DL + +G+ G +
Sbjct: 66 FLLTLEGFDTIEKAQELAGAELLLQREQLPPP--DADEYYWHDLLGLSVVTNEGQALGII 123
Query: 120 CGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ GA + ++ + ++ +LIP + VN+ + I P+
Sbjct: 124 KDILETGANDVYLVRDDATKREYLIPAIASVISSVNIHTGTMTITPL 170
>gi|160880538|ref|YP_001559506.1| 16S rRNA processing protein RimM [Clostridium phytofermentans ISDg]
gi|189040130|sp|A9KLM3|RIMM_CLOPH RecName: Full=Ribosome maturation factor rimM
gi|160429204|gb|ABX42767.1| 16S rRNA processing protein RimM [Clostridium phytofermentans ISDg]
Length = 169
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRK 56
++ L+ + I +THG+ GEV + + D+NR+ + + +EL I +
Sbjct: 1 MEDLLRVGVISSTHGIKGEVKVFPTTD---DMNRFKKLKMVTLDTGKEQKELEIENVKFF 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I F GIDNI+ + + L R++ D L E EFF DL ++ + G
Sbjct: 58 KQFVILKFKGIDNINDIEKYKGKDLLISRENAVD--LAEGEFFIFDLIGLQAEEEDGNSL 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G++ V GA + IK K LIP+ V +++L E K+++ I
Sbjct: 116 GELTEVLQTGANDVFVIKTKQGKEILIPYIDDCVKKIDLNEKKLVVHLIPG 166
>gi|269127627|ref|YP_003300997.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
gi|268312585|gb|ACY98959.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
Length = 172
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYRKN---KRF 60
D V++ IG HG+ GEV +D ++P + D L L + R R
Sbjct: 3 DDQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+D+ +A +LR L D E + DEF + +L + G G V
Sbjct: 63 LLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLE-DPDEFHDHELIGLTAVTTDGTPVGTVR 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ ++ A +L I+ L+PF V EV++ +I+IDP L+ +
Sbjct: 122 DILHY-AQDLLVIRRETGGEALVPFVAALVPEVDVAGGRIVIDPPPGLLDES 172
>gi|327479754|gb|AEA83064.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri DSM 4166]
Length = 175
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D+LV++ I + HG+ G+V + S+ + N +D R+ L D +++ ++K +
Sbjct: 6 DELVVIGKIVSVHGVRGDVKVYSFTDPIDNLLDYRRWTLRRGDEVKQVELVKGRLQGNIL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A+ G+ + A D ++ R + L++ E++ L+ ++ ++ G+ GQV
Sbjct: 66 VASLKGLTDREVARTYADFEICVPRSELP--ALDDGEYYWYQLQGLKVLNQAGQLLGQVD 123
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K ++ L+P+T VL+V+L ++ +D
Sbjct: 124 HLLETGANDVLVVKPCAGSLDDRERLLPYTDHCVLKVDLDSGEMQVD 170
>gi|229918607|ref|YP_002887253.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
gi|259585644|sp|C4L602|RIMM_EXISA RecName: Full=Ribosome maturation factor rimM
gi|229470036|gb|ACQ71808.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
Length = 172
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I THGL GEV I + + P + N L + ++ + YR +K+F + TF
Sbjct: 6 VGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFHLVTF 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G DNI+ + + LKLY + D L+E EF+ ++ E G+ G V ++
Sbjct: 66 KGFDNINLIEKYKGLKLYVHAEHVHD--LDEHEFYYHEIIGCEAV-VDGEVIGVVDDIFE 122
Query: 125 F-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + IK + LIP+ + V E+++ +++I PI +++
Sbjct: 123 TNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVVITPIPGMIDD 170
>gi|157374299|ref|YP_001472899.1| 16S rRNA-processing protein [Shewanella sediminis HAW-EB3]
gi|189040855|sp|A8FSE8|RIMM_SHESH RecName: Full=Ribosome maturation factor rimM
gi|157316673|gb|ABV35771.1| 16S rRNA processing protein RimM [Shewanella sediminis HAW-EB3]
Length = 176
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ + K +A
Sbjct: 8 VVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQGKAVVAC 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ + + L EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVETREHAQMLTNCEIAVTPEQM--DTLPEDEFYWRDLIGCEVMNTKGYNMGKVQEIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ ++EVNL E +I +D
Sbjct: 126 ETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLTEKQITVD 171
>gi|182680253|ref|YP_001834399.1| 16S rRNA-processing protein RimM [Beijerinckia indica subsp. indica
ATCC 9039]
gi|209573543|sp|B2IDX8|RIMM_BEII9 RecName: Full=Ribosome maturation factor rimM
gi|182636136|gb|ACB96910.1| 16S rRNA processing protein RimM [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 173
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 19 LNGEVYIDSYANNPIDLNRYVLYSNDN-------RELRILKMYRKNKRFIATFSGIDNIH 71
+ GEV + S+ P ++ Y S+ + LR++K N F+A G+
Sbjct: 1 MRGEVRLQSFTEVPQAISAYGPLSDASGKKSFSIASLRLVK----NAVFVARIEGVTTRE 56
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--DRQGK--YWGQVCGVYNFGA 127
+A L +L LY R+ EE+EF+ DL ++ F D GK +G++ V NFG
Sbjct: 57 AAEALTNLSLYVSREALP--PPEEEEFYLADLIGLDAFVADADGKEVLFGRIADVLNFGG 114
Query: 128 GSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDP 164
G ILEI + +T L+PFT+ V ++L ++L+ P
Sbjct: 115 GDILEIAPSDGGETRLLPFTRQVVPRIDLTARRVLVVP 152
>gi|258653300|ref|YP_003202456.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
gi|258556525|gb|ACV79467.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
Length = 167
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR-ELRILKMYRKNKRFIA 62
V++ IG HGL G+V I ++P R+ VL ++ +R L ++ R +
Sbjct: 3 VVVGRIGRPHGLRGDVTIAVNTDDPD--ARFAAGSVLGTDPDRGPLTVVTRRRSGGVLLL 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ +A LR L + + + + DEF++ L + D G+ G+V V
Sbjct: 61 RFEGIEDRDAAEALRGTSLTVPAETLPESD-DPDEFYDHQLIGLAVRDPSGQDLGKVVEV 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++ A +L ++ +PF + V V+L ++ +++DP
Sbjct: 120 WHPPASPVLLVRRPDGSDEAVPFVRALVPTVDLAQSYLVVDP 161
>gi|225571998|ref|ZP_03780862.1| hypothetical protein RUMHYD_00292 [Blautia hydrogenotrophica DSM
10507]
gi|225040531|gb|EEG50777.1| hypothetical protein RUMHYD_00292 [Blautia hydrogenotrophica DSM
10507]
Length = 168
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR---ELRILKMYRKN 57
++ + + I +THG+ GEV + N +DL+ +L + R E+ +K +++
Sbjct: 1 MEAFLQVGVISSTHGVRGEVKVFPTTNEKERFLDLDSVILDTGKERLTLEIEGVKFFKQF 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F G DNI+ + + L+ R+ + L EDE++ DL M+ GKY+G
Sbjct: 61 A--ILKFKGFDNINDIEKYKGKSLWIPRE--QAVPLSEDEYYIADLLGMDVVLEDGKYFG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++ V GA + ++ + L+P K VL+V ++ N++ I
Sbjct: 117 RLEDVIETGANDVYVVRTEEGQEVLLPAIKECVLQVEVERNQMRI 161
>gi|329766863|ref|ZP_08258391.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
gi|328837588|gb|EGF87213.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
Length = 169
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR--ILKMYRKNKR-FIAT 63
+ I TH L GEV + S + + +L + N+ ++ ++ YR +K +
Sbjct: 5 VGKIVNTHSLKGEVKVISSTDFEEQRFEKGTELLITRGNQVVKEVTVESYRTHKNNLLVK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID+I A +L++L++ + ELEE+EF+ ++ E FD GK G++ +
Sbjct: 65 FVGIDSIEEAEKLKNLQIKIDSDNIG--ELEENEFYFHEIIGCEVFDENGKSLGEISEIL 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK+ K LIP+ + V +++++ KI I+ + GL
Sbjct: 123 TPGANDVWVIKSQNGKEILIPYIEDIVKKIDVENKKIDIE-VMEGL 167
>gi|224824769|ref|ZP_03697876.1| 16S rRNA processing protein RimM [Lutiella nitroferrum 2002]
gi|224603262|gb|EEG09438.1| 16S rRNA processing protein RimM [Lutiella nitroferrum 2002]
Length = 168
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNR--ELRILKMYRKNKRF 60
D LVLM + G+ G V I + + L Y ++ D + R + K
Sbjct: 4 DDLVLMGYVRGAFGVRGWVKIHADTGSADSLFDYPVWWLGRDGQWSSYRFEDGLVQPKAL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+ + +A +R +++ R +F E +DE++ +DL ++ ++ G+ +GQV
Sbjct: 64 AAKLEGVGSREAAEAMRGMQIAIPRSEFP--ETADDEYYWSDLIGLDVVNKDGQRFGQVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L ++ ++ +LIPF VL+VNL + +I +D
Sbjct: 122 ELMETGANDVLVVREG-KREWLIPFVGQFVLDVNLTDKRITVD 163
>gi|85374321|ref|YP_458383.1| 16S rRNA processing protein [Erythrobacter litoralis HTCC2594]
gi|122544281|sp|Q2N9Q5|RIMM_ERYLH RecName: Full=Ribosome maturation factor rimM
gi|84787404|gb|ABC63586.1| 16S rRNA processing protein [Erythrobacter litoralis HTCC2594]
Length = 169
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR--FIATFSGI 67
+A I HG+ G+V + L +S+ N LK R + + IA F+ +
Sbjct: 9 LAAITGAHGVRGDVRLKLLGEG---LEALKAHSSFNEGTLTLKSVRSDNKGGAIARFAEV 65
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
A +LR L R+ LEE E++ DL ++ GK G+V V+N+GA
Sbjct: 66 QGREQAEKLRGTTLTVPREALP--PLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHNYGA 123
Query: 128 GSILEI-KNTME----KTFLIPFTKFAVLEVNLQENKILID 163
I+EI K+ + KTF++P T AV+E N + I D
Sbjct: 124 TDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIVIATD 164
>gi|219849545|ref|YP_002463978.1| 16S rRNA processing protein RimM [Chloroflexus aggregans DSM 9485]
gi|219543804|gb|ACL25542.1| 16S rRNA processing protein RimM [Chloroflexus aggregans DSM 9485]
Length = 169
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMY-RKNKR 59
+D L+ + +G G+ G++ + S +++P L R+ V ++ +++ K
Sbjct: 1 MDDLLYIGVLGAPFGVRGQIKLHSISSHPEHLIRHLRTVFIGPKRIPHQVTRLFLHKPGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I + + +AS+LR ++Y D L EDEFF DL + G G+V
Sbjct: 61 LIIQLQSVTDRDAASDLRGAEVYIAAADAA--PLGEDEFFYHDLIGLAAVTDTGDLIGEV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V GAG I I L+P + ++ ++L E +++I PI
Sbjct: 119 RDVLETGAGEIAVIARRGRADALVPMVRDFIVAIDLVERRLVIRPI 164
>gi|315604547|ref|ZP_07879610.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313559|gb|EFU61613.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 180
str. F0310]
Length = 169
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
A IG HGL GEV +D +++P + + +R L + + +R +A+F +
Sbjct: 6 AIIGPAHGLRGEVILDVRSDDPSVVAPGMRLDVEGASRVLTVRSVRVHKERVLASFEECE 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ A LR +L + E EED ++ L + G G V G+ GA
Sbjct: 66 SREDAERLRGARLLVE------EHPEEDAWYPHQLTGLTARTPAGDVLGTVSGL-RLGAA 118
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
L + +T T ++PF V V++ ++IDP
Sbjct: 119 QDLLLVDTPAATVMVPFVSALVPTVDVDRGVVVIDP 154
>gi|153813991|ref|ZP_01966659.1| hypothetical protein RUMTOR_00198 [Ruminococcus torques ATCC 27756]
gi|317501514|ref|ZP_07959712.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088011|ref|ZP_08336933.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848387|gb|EDK25305.1| hypothetical protein RUMTOR_00198 [Ruminococcus torques ATCC 27756]
gi|316897143|gb|EFV19216.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409159|gb|EGG88614.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
Length = 168
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRI-LKMYRKNKRF 60
+++ + + I +THG+ GEV + ++P + V+ R++ + ++ R K+F
Sbjct: 1 MEQFLQVGAITSTHGIRGEVKVFPTTDDPARFKKLKKVILDTGKRQIDMEIQSVRFFKQF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L+ R++ LEE+E++ DL ME F +G ++G V
Sbjct: 61 VIVKFKGIDNINDVEQYKGSSLFVSRENAVS--LEENEYYIADLIGMEVFTEEG-HFGIV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + I + + L+P K + V+++ K+ I
Sbjct: 118 KDVMETGANEVYIIDSDVHGEVLVPAIKQCIENVDVENGKMQI 160
>gi|325681250|ref|ZP_08160780.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
gi|324107172|gb|EGC01458.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
Length = 172
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ KL+ I + GL GEV + ++ + P L + LY + I + + +
Sbjct: 1 MQKLLEAGKIVSVFGLKGEVKVQAWCDTPDFLCEFDTLYYKSGTPVEIERSRVQKNIVVM 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCG 121
GID + A ++R+ LY R D EL+E+ +F DL ++ D G+ +G +
Sbjct: 61 KIKGIDTVEEAQKIRNRVLYIDRDDV---ELDENTYFVQDLVGLKVVDLDSGREYGTLTE 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V GA + IK+ K + IP V E +++ + I P+
Sbjct: 118 VSETGANDVYHIKSADGKMYYIPAIPSVVAETDIEGGVMKITPL 161
>gi|297584016|ref|YP_003699796.1| 16S rRNA processing protein RimM [Bacillus selenitireducens MLS10]
gi|297142473|gb|ADH99230.1| 16S rRNA processing protein RimM [Bacillus selenitireducens MLS10]
Length = 174
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYS--NDNRELRILKMYR 55
+ K + + I THG++GEV + S + RY LY+ D+R + +R
Sbjct: 1 MSKWLNVGKIVNTHGIHGEVRVISRTD--FKEERYAKGRELFLYNPEKDHRTSVTVVSWR 58
Query: 56 KNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
++K+F + TF G N++ RD L D D+ +EEDEF+ ++ + D QG
Sbjct: 59 QHKQFDLLTFEGYTNVNDVEGFRDHLLQVDGDDL-DDPMEEDEFYYHEIIGLSVVDEQGI 117
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + + GA + ++ +K LIP+ VL V+L++ + + I GL
Sbjct: 118 EIGRVKEILSPGANDVWVVQRQGKKDALIPYIDDVVLSVDLEDGVVHV-RIPEGL 171
>gi|296133546|ref|YP_003640793.1| 16S rRNA processing protein RimM [Thermincola sp. JR]
gi|296032124|gb|ADG82892.1| 16S rRNA processing protein RimM [Thermincola potens JR]
Length = 174
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF- 60
KL+ + I THG GEV + ++P + Y + REL I K R +K F
Sbjct: 7 KLIAIGKIINTHGHKGEVKVFPLTDDPRRMEELEKVYFILGESTRELTI-KQVRYHKNFV 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I +F I ++++A L++ ++ + + + L E ++ D+ + F +G+Y G++
Sbjct: 66 ILSFEEIKDMNAAELLKNGEICITKDELRS--LPEGSYYIFDIIGLNVFTNEGRYLGEIT 123
Query: 121 GVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + E++++ K +LIP K V ++ ++ +++I P+ L
Sbjct: 124 DVIQTGANDVYEVRDSKSGKHYLIPALKQIVKSIDTEKKEMIICPMEGLL 173
>gi|27467832|ref|NP_764469.1| rimM protein [Staphylococcus epidermidis ATCC 12228]
gi|251810669|ref|ZP_04825142.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876329|ref|ZP_06285196.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|293366796|ref|ZP_06613472.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|33301521|sp|Q8CPH7|RIMM_STAES RecName: Full=Ribosome maturation factor rimM
gi|27315377|gb|AAO04511.1|AE016747_8 rimM protein [Staphylococcus epidermidis ATCC 12228]
gi|251805829|gb|EES58486.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295354|gb|EFA87881.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|291319097|gb|EFE59467.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329724354|gb|EGG60866.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU144]
gi|329736333|gb|EGG72605.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU028]
gi|329736626|gb|EGG72892.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU045]
Length = 167
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL-RILKMYRKNKRF-IA 62
V + I THG+ GEV + S + +L ++N E+ + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINEIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVKG--EKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD 167
>gi|226224396|ref|YP_002758503.1| 16S rRNA processing protein RimM [Listeria monocytogenes Clip81459]
gi|259585647|sp|C1KW92|RIMM_LISMC RecName: Full=Ribosome maturation factor rimM
gi|225876858|emb|CAS05567.1| Putative 16S rRNA processing protein RimM [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 172
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ GK
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGKEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|172060005|ref|YP_001807657.1| 16S rRNA-processing protein RimM [Burkholderia ambifaria MC40-6]
gi|209573545|sp|B1YV58|RIMM_BURA4 RecName: Full=Ribosome maturation factor rimM
gi|171992522|gb|ACB63441.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MC40-6]
Length = 225
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF EL DEF+ DL +E + Q G
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ELAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 TVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|319401470|gb|EFV89680.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
FRI909]
Length = 167
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL-RILKMYRKNKRF-IA 62
V + I THG+ GEV + S + +L ++N E+ + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVDSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINEIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVKG--EKEYLIPYIEDVVKDIDIENKTIKITPMEGLLD 167
>gi|111225150|ref|YP_715944.1| 16S rRNA-processing protein RimM [Frankia alni ACN14a]
gi|122953795|sp|Q0RDP3|RIMM_FRAAA RecName: Full=Ribosome maturation factor rimM
gi|111152682|emb|CAJ64423.1| 16S rRNA processing protein rimM [Frankia alni ACN14a]
Length = 180
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE-----LRILKMYRKNKRFIA 62
+++ IG HG+ G+V I+ + P R+ L + RE L + + + R +
Sbjct: 5 IVVGRIGRPHGVRGDVTIEVRTDLP--QRRFALGAVLGREGGGAPLTVAEARWHSGRLLL 62
Query: 63 TFSGIDNIHSASELRDLKLY-------AKRQDFKDEELEE-DEFFNTDLEEMETFDRQGK 114
F G+++ +A LRD+ L D +D E E D +++ DL +E G
Sbjct: 63 RFQGVEDRGAAEALRDVLLTIDSAEAGPPVDDDEDAEGEGGDIWWDRDLVGLEAVTTAGA 122
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + AG +L + L+PF + V V+ +I++DP
Sbjct: 123 TLGRVTDVIHAPAGDLLAVGRPGGGEHLVPFVREIVPTVDPAAGRIVVDP 172
>gi|317495378|ref|ZP_07953747.1| 16S rRNA processing protein RimM [Gemella moribillum M424]
gi|316914437|gb|EFV35914.1| 16S rRNA processing protein RimM [Gemella moribillum M424]
Length = 169
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRFI-AT 63
+ I TH L GEV + S + +L + N+ +R +++ YR +K F+
Sbjct: 5 VGKIVNTHSLKGEVKVISSTDFEEERFKKGSKLLITRGNQLIREVVVQSYRNHKNFLLVK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID++ A +L++L++ K K ELEE+EF+ + E FD K G++ +
Sbjct: 65 FEGIDSVEEAEKLKNLQI--KIDSDKVGELEENEFYFHQIIGCEVFDENDKNLGEIIDIL 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK K LIP+ + V ++++ K+ I+ + GL
Sbjct: 123 TPGANDVWVIKGENGKEILIPYIEDVVKKIDITNKKVNIE-VMEGL 167
>gi|134102488|ref|YP_001108149.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|291004121|ref|ZP_06562094.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|166226476|sp|A4FME9|RIMM_SACEN RecName: Full=Ribosome maturation factor rimM
gi|133915111|emb|CAM05224.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
Length = 180
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 5 DKLVLMATIGT---THGLNGEVYIDSYANNP---------IDLNRYVLYSNDNRELRILK 52
DK L +G HG+ GE+ ++ ++P + + R ++++N +
Sbjct: 3 DKQPLTLAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRRGAHASEN--FTVAA 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + G++ +A ELR L + + + + DEF + LE +
Sbjct: 61 ARPHAGRLLVRAEGVEGREAAEELRGALLTVTADELESTD-DPDEFHDHQLEGLRVVFPA 119
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ G V V + AG +L ++ ++ L+PF V E++L+ +I++DP
Sbjct: 120 GEEAGVVAEVVHTPAGELLAVRTPDDREVLVPFVSEMVPEIDLEAGRIVVDP 171
>gi|313888498|ref|ZP_07822165.1| 16S rRNA processing protein RimM [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845527|gb|EFR32921.1| 16S rRNA processing protein RimM [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 167
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
D + + I THG+ GE+ +D Y + ++ V D +E I K+ R N
Sbjct: 6 DSITCIGKIINTHGIKGELKVDPYTFDKKRFSKLESVFVGEDLKEFFIKKV-RVNDFVYL 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G +NI+ L+ +Y K +D ELEED+++ +DL E +D G Y G + V
Sbjct: 65 SFEGYENINDVLNLKGFNIYIKDED--RLELEEDQYYVSDLIGKEVYDTDGNYIGVLKEV 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTK 147
+ A I I+ + T+ +P K
Sbjct: 123 LEYPANDIFVIEGKDKGTYQVPGVK 147
>gi|57866698|ref|YP_188388.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242242522|ref|ZP_04796967.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
gi|67461258|sp|Q5HPV2|RIMM_STAEQ RecName: Full=Ribosome maturation factor rimM
gi|57637356|gb|AAW54144.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242234030|gb|EES36342.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
Length = 167
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL-RILKMYRKNKRF-IA 62
V + I THG+ GEV + S + +L ++N E+ + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVDSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINDIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWIVKG--EKEYLIPYIEDVVKDIDIENKTIKITPMEGLLD 167
>gi|85708913|ref|ZP_01039979.1| 16S rRNA processing protein [Erythrobacter sp. NAP1]
gi|85690447|gb|EAQ30450.1| 16S rRNA processing protein [Erythrobacter sp. NAP1]
Length = 175
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
LV +A I HG+ GEV + L ++ ++ L+ ++ K IA F+
Sbjct: 13 LVELAAITGAHGVAGEVRLKLLGEGLDALRQHKSFNGGALTLKKVRSDNKGG-AIARFAE 71
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ A LR L +R+ ELEE E+++ DL + G G+V V NFG
Sbjct: 72 VQGRGEAERLRGTVLTVQREALP--ELEEGEYYHADLIGLAVETDAGNAIGKVTAVQNFG 129
Query: 127 AGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQ 156
A I+EI K ++P TK AV+E + Q
Sbjct: 130 ATDIIEIALDPPPEKGLKAIMVPMTKAAVIEWDAQ 164
>gi|108760176|ref|YP_631740.1| 16S rRNA processing protein RimM [Myxococcus xanthus DK 1622]
gi|122388855|sp|Q1D6I3|RIMM_MYXXD RecName: Full=Ribosome maturation factor rimM
gi|108464056|gb|ABF89241.1| 16S rRNA processing protein RimM [Myxococcus xanthus DK 1622]
Length = 188
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 13 IGTTHGLNGEVYIDSY--ANNPID-LNRYVLYSNDN--RELRILKMYRKNKRFIATFSGI 67
+ HGL GEV I + A+ +D ++R + + RE+R+ + K I G+
Sbjct: 13 VARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRPTPKEDIVVLEGV 72
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
++ + A L K++ R+D E E EFF DL ++ D G G+V ++ G
Sbjct: 73 ESRNDAEALVGAKVFVFREDL--EPPAEGEFFQGDLVGLDAVDANGNALGRVEEIWTTGE 130
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
L I+ + + ++PF V V+L+ +I+I P
Sbjct: 131 VPNLVIRASGREELVVPFADEFVPTVDLEARRIVIHP 167
>gi|217964055|ref|YP_002349733.1| 16S rRNA processing protein RimM [Listeria monocytogenes HCC23]
gi|254797753|sp|B8DDW0|RIMM_LISMH RecName: Full=Ribosome maturation factor rimM
gi|217333325|gb|ACK39119.1| 16S rRNA processing protein RimM [Listeria monocytogenes HCC23]
Length = 172
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|308235877|ref|ZP_07666614.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14018]
Length = 194
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN-RELRILKMYRKNKRFIAT 63
L+ + IG GL GEV + + + P + + VLY+ D RE I R+I
Sbjct: 17 LLRVCRIGKAQGLKGEVTVQIFTDEPYERFKAGNVLYTQDGEREFTIESARTFKSRWILL 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE-------EMETFDRQGKYW 116
F N + A L L+LY K Q ++ E +E+ ++ DL E + +
Sbjct: 77 FEQSLNRNDAEALNGLELYTKAQSAQELE-QENAWYIKDLVGLSARICENNSLGVAPREI 135
Query: 117 GQVCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + GA S+L+I+ + +KT L+PF + V EVNL+E + +DP
Sbjct: 136 GKVVDVID-GAQSLLKIRLSTPVGDDKTALVPFVQALVPEVNLKEKYLTLDP 186
>gi|313139561|ref|ZP_07801754.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132071|gb|EFR49688.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 200
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D + +++ R K R+
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPDSVLYTRDGSQEYVVEYARTFKNRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG--- 117
I F GID+ ++ ++LY + D +D LEED ++ DL +E +G G
Sbjct: 72 IVKFEGIDDRDASEAANGIELYGEADDPEDM-LEEDAWYPKDLVGLEARLAEGNGLGLPA 130
Query: 118 -QVCG-VYNF--GAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
QV G V + A ++L+I+ E T L+PF V +++L+E + I
Sbjct: 131 GQVIGKVVDVLDSAQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTI 190
Query: 163 DP 164
DP
Sbjct: 191 DP 192
>gi|311115027|ref|YP_003986248.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14019]
gi|310946521|gb|ADP39225.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14019]
Length = 198
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN-RELRILKMYRKNKRFIAT 63
L+ + IG GL GEV + + + P + + VLY+ D RE I R+I
Sbjct: 21 LLRVCRIGKAQGLKGEVTVQIFTDEPYERFKAGNVLYTQDGEREFTIESARTFKSRWILL 80
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE-------EMETFDRQGKYW 116
F N + A L L+LY K Q ++ E +E+ ++ DL E + +
Sbjct: 81 FEQSLNRNDAEALNGLELYTKAQSAQELE-QENAWYIKDLVGLSARICENNSLGVAPREI 139
Query: 117 GQVCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + GA S+L+I+ + +KT L+PF + V EVNL+E + +DP
Sbjct: 140 GKVVDVID-GAQSLLKIRLSTPVGDDKTALVPFVQALVPEVNLKEKYLTLDP 190
>gi|311063761|ref|YP_003970486.1| 16S rrNA processing protein [Bifidobacterium bifidum PRL2010]
gi|310866080|gb|ADP35449.1| RimM 16S rRNA processing protein [Bifidobacterium bifidum PRL2010]
Length = 200
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D + +++ R K R+
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPDSVLYTRDGSQEYVVEYARTFKNRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG--- 117
I F GID+ ++ ++LY + D +D LEED ++ DL +E +G G
Sbjct: 72 IVKFEGIDDRDASEAANGIELYGEADDPEDM-LEEDAWYPKDLVGLEARLAEGNGLGLPA 130
Query: 118 -QVCG-VYNF--GAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
QV G V + A ++L+I+ E T L+PF V +++L+E + I
Sbjct: 131 GQVIGKVVDVLDSAQTLLKIRLVSPVRDSVTGEVTESTALVPFVDELVPDIDLEEGYLTI 190
Query: 163 DP 164
DP
Sbjct: 191 DP 192
>gi|154503293|ref|ZP_02040353.1| hypothetical protein RUMGNA_01117 [Ruminococcus gnavus ATCC 29149]
gi|153795960|gb|EDN78380.1| hypothetical protein RUMGNA_01117 [Ruminococcus gnavus ATCC 29149]
Length = 172
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR---ELRILKMYRKN 57
+++ + + I +THG+ GEV + ++P L + +L + + E++ +K +++
Sbjct: 1 MEQFLQVGVISSTHGIRGEVKVFPTTDDPNRFKKLKKVILETKKEKLSLEVQGVKFFKQ- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KY 115
I F GIDNI+ + + L+ R+D LEEDE+F DL ME + + +
Sbjct: 60 -FVIVKFKGIDNINDIEQYKGCSLFVSRED--AVALEEDEYFIADLIGMEVYTDENPEEL 116
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+G + V GA + +++ LIP + +L V+++ K+ +
Sbjct: 117 FGTLKDVIETGANEVYLVESKTHGEVLIPAIRQCILSVDVKAQKMQV 163
>gi|310286860|ref|YP_003938118.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
gi|309250796|gb|ADO52544.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
Length = 204
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D + +++ R K R+
Sbjct: 18 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPDSVLYTRDGSQEYVVEYARTFKNRW 75
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK----YW 116
I F GID+ ++ ++LY + D +D LEED ++ DL +E +G
Sbjct: 76 IVKFEGIDDRDASEAANGIELYGEADDPEDM-LEEDAWYPKDLVGLEARLAEGNGLGLPA 134
Query: 117 GQVCG-VYNF--GAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
GQV G V + A ++L+I+ E T L+PF V +++L+E + I
Sbjct: 135 GQVIGKVVDVLDSAQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTI 194
Query: 163 DP 164
DP
Sbjct: 195 DP 196
>gi|134295101|ref|YP_001118836.1| 16S rRNA-processing protein RimM [Burkholderia vietnamiensis G4]
gi|209573556|sp|A4JCJ8|RIMM_BURVG RecName: Full=Ribosome maturation factor rimM
gi|134138258|gb|ABO54001.1| 16S rRNA processing protein RimM [Burkholderia vietnamiensis G4]
Length = 225
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ + R+ L R +RIL+
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVAAHADAGRGGDALLSARRWWLERGAERLSVRILQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+D+ +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAQPAGVDDRDAALAMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVSLG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SIL + K+ T LIPF V V+ +I++D
Sbjct: 167 KVSGMIDNGVHSILRVEYPTVGKDGAPATDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|302344584|ref|YP_003809113.1| 16S rRNA processing protein RimM [Desulfarculus baarsii DSM 2075]
gi|301641197|gb|ADK86519.1| 16S rRNA processing protein RimM [Desulfarculus baarsii DSM 2075]
Length = 179
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLY----SNDNRELRILKMYRKNKRF 60
+LV M + GL GEV I S+A + R V+Y + R+L R
Sbjct: 5 RLVTMGRSAGSFGLRGEVKISSFAEDHEVFARAGVVYLGAEPGVAKPYRLLGARWHGGRL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T G+ A+ L LY +R+D L +DEF+ +L QG+ G V
Sbjct: 65 LMTLEGVTTREDAAALGGAWLYLRREDLP--PLADDEFYWFELIGARARTAQGQDLGHVF 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + GA L ++ K +IP + ++E++L +++DP
Sbjct: 123 ALTDNGAHDNLVLRGPGGKEAMIPLVEGVLVEMDLAAGLVVVDP 166
>gi|153854840|ref|ZP_01996063.1| hypothetical protein DORLON_02068 [Dorea longicatena DSM 13814]
gi|149752542|gb|EDM62473.1| hypothetical protein DORLON_02068 [Dorea longicatena DSM 13814]
Length = 187
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKM--YR 55
V +++L+ + I +THG+ GEV + ++P NR+ + + RE + L++ +
Sbjct: 18 VFMEELLQVGVITSTHGVRGEVKVFPTTDDP---NRFKSLKHVLLDTGREKKSLEVQGVK 74
Query: 56 KNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
K+F I F GIDNI+ + L +R+D ELEEDE+F D+ +E K
Sbjct: 75 FFKQFVILKFKGIDNINDIERYKRCPLLVERKDAV--ELEEDEYFIADMIGIEVVTEDDK 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+G + V GA + I L+P + +L+V+++ K+ I
Sbjct: 133 PFGTLKDVMETGANDVYVIDTDEHGEVLVPAIRECILDVDIENQKMKI 180
>gi|25028513|ref|NP_738567.1| 16S rRNA-processing protein [Corynebacterium efficiens YS-314]
gi|259507567|ref|ZP_05750467.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
gi|46397692|sp|Q8FP33|RIMM_COREF RecName: Full=Ribosome maturation factor rimM
gi|23493798|dbj|BAC18767.1| putative 16S rRNA processing protein [Corynebacterium efficiens
YS-314]
gi|259164841|gb|EEW49395.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
Length = 169
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY----VLYSND-NRE--LRILKMYRKNKRFIATFSGID 68
+HG+ GEV ++ ++P D+ RY VL+ RE L I R + F I
Sbjct: 13 SHGIRGEVVVEVTTDDP-DI-RYAPGEVLHGRQTGREHTLTIDTARAHQGRLLIKFEEIP 70
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + +A + +D+E + F++ +LE + G G V GV + AG
Sbjct: 71 DRTAADSLRGTRFFAPPLEREDDE---EGFYDHELEGLRII-HDGADIGVVTGVMHGPAG 126
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
ILE++ T K LIPF V EV+L+ I P
Sbjct: 127 EILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITP 162
>gi|254901179|ref|ZP_05261103.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J0161]
gi|254914088|ref|ZP_05264100.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293592110|gb|EFG00445.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 172
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 172
>gi|331085166|ref|ZP_08334252.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407949|gb|EGG87439.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 189
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRI-LKMYRKNKRF-IATFS 65
+ I +THG+ GEV + ++ + +VL +L + ++ + K+F I F
Sbjct: 28 VGVISSTHGVRGEVKVFPTTDDVKRFKKLKHVLLDTGKEQLPLEVEQVKFFKQFAILKFK 87
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GIDNI+ + + L R+D +L++DE+F D+ M F G +G + V
Sbjct: 88 GIDNINDIEKYKGKSLLVDRKDAV--KLKKDEYFIADMIGMHVFTEDGAEFGTLRDVLET 145
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + I T K L+P K +L V+++E K+ I
Sbjct: 146 GANDVYIIDTTDGKEVLVPAIKQCILNVDIEEQKMTI 182
>gi|313623297|gb|EFR93533.1| 16S rRNA processing protein RimM [Listeria innocua FSL J1-023]
Length = 172
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G+ IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K T +K LIP+ V ++N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGTDKKEKLIPYIADVVKDINTNDKKITIEVMEGLLD 172
>gi|160872661|ref|ZP_02062793.1| 16S rRNA processing protein RimM [Rickettsiella grylli]
gi|159121460|gb|EDP46798.1| 16S rRNA processing protein RimM [Rickettsiella grylli]
Length = 170
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELRILKMYRK----NK 58
K +L+ +IG +G+NG V I+SY N ID + L + R IL +K +
Sbjct: 4 KKILVGSIGKPYGINGWVKINSYTEPFTNLIDYRPWYLEAPGKRSSPILVGVKKCCLHGQ 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +A F SA + K+Y +R F L E++ DLE ++ ++R+ Y G
Sbjct: 64 QLLALFENSTTPESARFYTNYKIYVERDQF--FPLHAGEYYWADLEGLKVYNRENIYLGI 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPF 145
+ ++ GA +L I + +K +L+PF
Sbjct: 122 IQIIFATGANDVLVISD--KKRYLVPF 146
>gi|225018484|ref|ZP_03707676.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
gi|224948755|gb|EEG29964.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
Length = 174
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIAT-FSGIDN 69
I THG+ GEV I + + L + + + + R ++ R +K + F G+D+
Sbjct: 12 IVATHGIAGEVRIQPWCDEAEFLTEFDALYFDAAGKTQRTVERARVHKNVVVVKFKGVDS 71
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK--YWGQVCGVYNFGA 127
+ A LR+ +Y R++ EL E +F DL +E D +G +C V GA
Sbjct: 72 VEEAQSLRNQIVYIDREEL---ELPEGTYFIQDLIGLEVLDADDPQTVYGTLCEVSQPGA 128
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ I+ LIP V++ +L N++ I P+
Sbjct: 129 NDVYHIRRPDGTENLIPAIPDVVVQTDLDGNRMFIRPL 166
>gi|57242690|ref|ZP_00370627.1| 16S rRNA processing protein RimM, putative [Campylobacter
upsaliensis RM3195]
gi|57016619|gb|EAL53403.1| 16S rRNA processing protein RimM, putative [Campylobacter
upsaliensis RM3195]
Length = 176
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIA 62
+ K VL+A IG + GL G + + + ++ P + ++ D REL ++K Y KN++ +
Sbjct: 1 MSKFVLVAKIGRSVGLRGYLKLHNLSDFPSQFQKNLTFFTKDKREL-VIKDYDKNRQSVL 59
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F +++ L +L+LY + ++ +L++DEFF D+ E D Q GQV
Sbjct: 60 -FYTYESLEKTKNLVNLELYQSIEKTRELCKLKKDEFFYFDIIGCEVRDEQ-IILGQVQD 117
Query: 122 VYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKIL 161
+ G G + EIK+ K F IP+ +L++++++ +IL
Sbjct: 118 ILESGGGYLFEIKSDEKLTVQGFSKIFFIPYIDKYILQIDIEKKQIL 164
>gi|258612038|ref|ZP_05243865.2| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300766440|ref|ZP_07076395.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
gi|258607916|gb|EEW20524.1| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300512864|gb|EFK39956.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
Length = 169
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K D LEE+EF+ ++ GK G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGKELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|291563272|emb|CBL42088.1| 16S rRNA processing protein RimM [butyrate-producing bacterium
SS3/4]
Length = 171
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVL--YSNDNRELRILKMYRKNK 58
++K + + I + HG+ GEV + ++ + L++ +L + REL+I ++
Sbjct: 1 MEKYLRVGVITSPHGVRGEVKVYPTTDDVMRFKKLDKVILDLGRGETRELKIRQVKFFKN 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+D ++ R L R + LEEDEFF TDL + +G+ G
Sbjct: 61 MVILKFDGVDTMNEVEGWRQKDLLITRD--QAIPLEEDEFFITDLIGLNVVTDEGETLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V GA + +K K L+P + +L+V+L + ++L+ + L+
Sbjct: 119 LTDVMETGANDVYCVKTPEGKELLLPAIRDCILDVDLDKEEMLVHVLPGLLD 170
>gi|15836713|ref|NP_297401.1| 16S rRNA-processing protein RimM [Xylella fastidiosa 9a5c]
gi|71899241|ref|ZP_00681403.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|14423900|sp|Q9PH38|RIMM_XYLFA RecName: Full=Ribosome maturation factor rimM
gi|9104888|gb|AAF82921.1|AE003864_9 16S rRNA processing protein [Xylella fastidiosa 9a5c]
gi|71730974|gb|EAO33043.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
Length = 170
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYRKNKR 59
++ +L+ + GL GE+ I+S+ + RY +L S E L + Y KR
Sbjct: 5 ERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYETGKR 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IATF GI++ ++ + ++Y R DE++ DLE ++ +G G V
Sbjct: 65 LIATFPGINDRNAVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVVLGSV 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
+++ GA ++ I E+ LIPF + V V+ + +I++D
Sbjct: 123 SHLFSNGANDVIVIHGERER--LIPFVQPDYVKSVDFEAERIVVD 165
>gi|225374448|ref|ZP_03751669.1| hypothetical protein ROSEINA2194_00063 [Roseburia inulinivorans DSM
16841]
gi|225213686|gb|EEG96040.1| hypothetical protein ROSEINA2194_00063 [Roseburia inulinivorans DSM
16841]
Length = 173
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKM----YRKNK 58
++ L+ + I TTHG+ GEV + ++P + + + +EL L++ + KN
Sbjct: 1 MEDLLQVGVITTTHGVRGEVKVFPTTDDPARFKKLKNVVLDTGKELVDLEVAGVKFFKN- 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F GIDNI+ + R LY R++ +L+++E+F DL ++ +G+ G+
Sbjct: 60 MVIVKFKGIDNINDVEKYRKKSLYVTRENAV--KLKKNEYFIADLIGLQAESDEGEDLGE 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ V GA + + L+P K V EV+L+ KI++
Sbjct: 118 LSDVLQTGANDVYVLSKEGTDDILLPAIKECVKEVDLENGKIIV 161
>gi|329936720|ref|ZP_08286427.1| 16S rRNA-processing protein RimM [Streptomyces griseoaurantiacus
M045]
gi|329303950|gb|EGG47833.1| 16S rRNA-processing protein RimM [Streptomyces griseoaurantiacus
M045]
Length = 211
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPPSAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEE--DEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ + +A LR+ L A D EE+ E DE+++ L +++ G G++
Sbjct: 63 FEGVRDRTAAEALRNTVLIA---DVDPEEMPEGEDEYYDHQLMDLDVVTVDGTEVGRITE 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + + ++ +IPF + V E++L E K +IDP
Sbjct: 120 VSHLPSQDLFVVERPDGTEVMIPFVEEIVTEIDLAEQKAVIDP 162
>gi|315658472|ref|ZP_07911344.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
gi|315496801|gb|EFU85124.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
Length = 173
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
V + I THG+ GEV + S+++ P ++ + ++NDN EL + YR +K F
Sbjct: 10 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEV-LTLKHNNDNVELTVTS-YRIHKGFH 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G DNI+ + LY +R D + EL E EF+ +D+ F+ + G+V
Sbjct: 68 MLKFEGFDNINDVESFKGDYLYQER-DHEGIELAEHEFYYSDIIGCTVFNGEIPI-GRVI 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K ++IP+ V +V+++ I+I P+ L+
Sbjct: 126 NIIETGANDVWVVKG--DKEYMIPYIADVVKDVDIENKMIMITPLEGLLD 173
>gi|255522476|ref|ZP_05389713.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
J1-175]
gi|328466403|gb|EGF37554.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 1816]
gi|332312234|gb|EGJ25329.1| Ribosome maturation factor rimM [Listeria monocytogenes str. Scott
A]
Length = 172
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|73667543|ref|YP_303559.1| 16S rRNA processing protein RimM [Ehrlichia canis str. Jake]
gi|109893014|sp|Q3YQP4|RIMM_EHRCJ RecName: Full=Ribosome maturation factor rimM
gi|72394684|gb|AAZ68961.1| 16S rRNA processing protein RimM [Ehrlichia canis str. Jake]
Length = 173
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 5/160 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFIATF 64
L+ + I ++HG++G V I ++ +P D Y + ++ + ++ I+ + +N
Sbjct: 5 LICLGVITSSHGISGHVKIRTFTESPEDFTSYGMLTDGTNTYKISIVSVISQNIIIAKIK 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + A LR+ KL+ ++ + DEF++ DL + K +G + ++N
Sbjct: 65 NIVSR-NDADLLRNKKLFIEKDKLPNLT-NNDEFYHNDLIGLNVILENNKVYGNIKKIHN 122
Query: 125 FGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILID 163
FG+ I+EI + +K+ ++PFTK +N++E I+I+
Sbjct: 123 FGSCDIIEICLSNSKKSTMLPFTKNIFPYINIKEKYIIIN 162
>gi|212636511|ref|YP_002313036.1| 16S rRNA-processing protein RimM [Shewanella piezotolerans WP3]
gi|226734092|sp|B8CQI3|RIMM_SHEPW RecName: Full=Ribosome maturation factor rimM
gi|212557995|gb|ACJ30449.1| RimM protein:PRC-barrel [Shewanella piezotolerans WP3]
Length = 176
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLY-SNDNRELRILKMYRKNKRFIAT 63
V++ +G++HG+ G + I +Y ++ D + ++L + RE+++L+ + K +A
Sbjct: 8 VVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLLKEQGEWREVKVLQWRMQGKAVVAC 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ + E L EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVETRDQAQALTNCEIAVTPEQM--EVLPEDEFYWRDLIGCEVVNTKGYNMGKVQEIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ + +V+L +IL+D
Sbjct: 126 ETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIQKVDLTAKQILVD 171
>gi|319892248|ref|YP_004149123.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|317161944|gb|ADV05487.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|323464655|gb|ADX76808.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
ED99]
Length = 167
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
V + I THG+ GEV + S+++ P ++ + Y L +K +R +K
Sbjct: 3 VEVGKIVNTHGIKGEVKVQSHSDFTEIRFQPGEVLQ-AEYQGQTL-LLTVKSHRMHKGLH 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G NI+ L+ LY +R D + EL+E EF+ +D+ FD + G+V
Sbjct: 61 MLTFEGYTNINDIEHLKGTHLYQER-DHEAIELDEHEFYYSDIIGCTVFDGD-RPIGRVT 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K LIP+ V EV+++ +I+I P+ LN
Sbjct: 119 EIFETGANDVWVVKG--DKEHLIPYIADVVKEVDIEGRRIVITPLEGLLN 166
>gi|315639579|ref|ZP_07894720.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
gi|315484678|gb|EFU75133.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
Length = 174
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I THG+ GEV + S + L RY VL+ + L + + YR++K F +
Sbjct: 7 VGKIVNTHGIRGEVRVISQTD--FALERYQPGKTLVLFRENQAPLTLTIDTYRRHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ RD L ++D EL E+EF+ ++ E +GK G+V
Sbjct: 65 LSFEGYPSINQVESFRDGILKVAKED--RVELAENEFYYYEIIGAEVVTEEGKVIGKVKE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ +K L+P+ + EV++ KI+++ I GL
Sbjct: 123 ILSPGANDVWVVQRKGKKDALLPYIDSVIKEVDVTAQKIIVE-IPEGL 169
>gi|28198019|ref|NP_778333.1| 16S rRNA-processing protein [Xylella fastidiosa Temecula1]
gi|182680645|ref|YP_001828805.1| 16S rRNA-processing protein RimM [Xylella fastidiosa M23]
gi|32129955|sp|Q87F55|RIMM_XYLFT RecName: Full=Ribosome maturation factor rimM
gi|238691052|sp|B2I6A7|RIMM_XYLF2 RecName: Full=Ribosome maturation factor rimM
gi|28056079|gb|AAO27982.1| 16S rRNA processing protein [Xylella fastidiosa Temecula1]
gi|182630755|gb|ACB91531.1| 16S rRNA processing protein RimM [Xylella fastidiosa M23]
gi|307579104|gb|ADN63073.1| 16S rRNA-processing protein RimM [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 170
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYRKNKR 59
++ +L+ + GL GE+ I+S+ + RY +L S E L + Y KR
Sbjct: 5 ERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYETGKR 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IATF GI++ + + ++Y R DE++ DLE ++ +G G V
Sbjct: 65 LIATFPGINDRNGVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVVLGSV 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
+++ GA ++ I E+ LIPF + V V+ + +I++D
Sbjct: 123 SHLFSNGANDVIVIHGERER--LIPFVQPDYVKSVDFEAERIVVD 165
>gi|296394373|ref|YP_003659257.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
gi|296181520|gb|ADG98426.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
Length = 171
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP--------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
++ I +HGL GEV ++ ++P L R ++ L +L
Sbjct: 1 MVGRIAKSHGLTGEVAVEIRTDDPERRFAPGSTLLLRMPKAKQADKALHVLSAREHASHL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQV 119
+ TF+ + + +A LR L + +D E + DEF++ +L + DR G G+V
Sbjct: 61 LVTFAEVMDRAAADSLRGALLVVRTEDLPPSE-DPDEFYDHELVGLRIVDRAGGGELGEV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + G L + + L+PF V+EV+L E ++
Sbjct: 120 ADVVHSAGGDWLVARVEGGREVLVPFVAAIVVEVSLAEKTAWVE 163
>gi|256824951|ref|YP_003148911.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
gi|256688344|gb|ACV06146.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
Length = 182
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +V +A IG H L GEV + + + P + L E L + + T
Sbjct: 14 EGMVRLARIGKPHALKGEVTVQLHTDEPEVRLAVGTAVQTVPAEEGPLTIASRRVHQGVT 73
Query: 64 FSGIDNI---HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
G + + A LR + L A DEEL+ + F+ DL +E D QG+ G V
Sbjct: 74 LLGFEQVTGRDGAEALRGVVLVAP----ADEELDGEGFYPEDLRGLEVVDGQGEPLGAVK 129
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++ A +LE+ T L+PF + V V+L+ ++ +
Sbjct: 130 DLHLRPAQDLLEVTTTAGHDVLVPFVEELVPHVDLEAGQVTV 171
>gi|227833408|ref|YP_002835115.1| 16S rRNA processing protein [Corynebacterium aurimucosum ATCC
700975]
gi|262184396|ref|ZP_06043817.1| 16S rRNA-processing protein RimM [Corynebacterium aurimucosum ATCC
700975]
gi|227454424|gb|ACP33177.1| 16S rRNA processing protein [Corynebacterium aurimucosum ATCC
700975]
Length = 166
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR---ELRILKMYRKNKRF 60
+L+ + +HG+ GEV ++ ++P R+ VL+ + EL I + R
Sbjct: 3 LLIGRVVKSHGIKGEVSVEVTTDSP--ETRFAVGEVLHGTQGKKEHELTIAAVRAHKGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQV 119
+ TF I + +A LR + +A+ D + E+D F++ +LE + DR K G+V
Sbjct: 61 LITFKEIPDRTAADSLRGTQFFAEPLD----DPEDDGFYDHELEGLRVLLDR--KEVGEV 114
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GV + S+LE+ K L+PF + V E++L I P
Sbjct: 115 TGVTHGPTQSLLEVTLAEGKEALVPFVEEIVPEIDLDAGTCTITP 159
>gi|149928268|ref|ZP_01916511.1| 16S rRNA-processing protein [Limnobacter sp. MED105]
gi|149822997|gb|EDM82239.1| 16S rRNA-processing protein [Limnobacter sp. MED105]
Length = 188
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
R+L+ + R +A GI+ A++ + ++Y R F E E++ DL
Sbjct: 70 FRVLQSKPHSSRIVAHLEGIEQPELAAQFKGRRVYVSRARFPAP--AEGEYYWVDLVGCR 127
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ +G+ G V V + GA IL +K+ E+ LIPF V+ V+ Q +I D
Sbjct: 128 VTNLEGRVLGTVTQVVDHGAHPILSVKSDAEQEMLIPFVAAYVVNVDTQAKQIQAD 183
>gi|110803164|ref|YP_698997.1| 16S rRNA-processing protein RimM [Clostridium perfringens SM101]
gi|122956637|sp|Q0SSB0|RIMM_CLOPS RecName: Full=Ribosome maturation factor rimM
gi|110683665|gb|ABG87035.1| 16S rRNA processing protein RimM [Clostridium perfringens SM101]
Length = 165
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
++ L+++ I THGL GE+ + + D YV+ ++ +K ++ + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGQKIKVEGVKYFKD--KVI 58
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++
Sbjct: 59 LKLQGINSIEEAEKLKRTYLEIEREDAI--ELEEDEYFIVDLVGCTVVDTEGFEYGKIKD 116
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + ++ +K L+P K VL++N+ E I I P
Sbjct: 117 VIQTPSNDVYWVQG--KKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|169630308|ref|YP_001703957.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus ATCC
19977]
gi|238688780|sp|B1MDI4|RIMM_MYCA9 RecName: Full=Ribosome maturation factor rimM
gi|169242275|emb|CAM63303.1| Probable 16S rRNA processing protein RimM [Mycobacterium abscessus]
Length = 173
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+++ I HG+ GE+ ++ ++P + L + +R + + + R
Sbjct: 3 LVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+ + +A LR D E + DEF++ LE + G G V
Sbjct: 63 LIRFAGVSDRDAADALRGTLFMVDTTDLPPIE-DPDEFYDHQLEGLAVRTLDGAAVGTVS 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G +L ++ + + L+PF V ++L + I IDP
Sbjct: 122 EVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDP 165
>gi|154509170|ref|ZP_02044812.1| hypothetical protein ACTODO_01691 [Actinomyces odontolyticus ATCC
17982]
gi|153798804|gb|EDN81224.1| hypothetical protein ACTODO_01691 [Actinomyces odontolyticus ATCC
17982]
Length = 170
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
A +G HGL GEV +D +++P + + + D R L + + R +A+F
Sbjct: 6 AIVGPAHGLRGEVIVDVRSDDPEVMAPGSRLDIAGDQRSLTVRTVRVHKDRVLASFEECV 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A LR +L D EED ++ +L+ ++ G G V G+ GA
Sbjct: 66 TREDAEALRGARL------LVDAHPEEDAWYPHELKGLQARTPSGDVLGSVSGLTP-GAA 118
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
L + T T L+PF V V+++ ++ID
Sbjct: 119 QDLLLVATDRGTVLVPFVTALVPTVDVEGGFVVID 153
>gi|224282417|ref|ZP_03645739.1| 16S rRNA-processing protein rimM [Bifidobacterium bifidum NCIMB
41171]
Length = 186
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 26/181 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RFI 61
++ + IG GL GEV + + + P R+ VLY+ D + +++ R K R+I
Sbjct: 1 MLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPDSVLYTRDGSQEYVVEYARTFKNRWI 58
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG---- 117
F GID+ ++ ++LY + D +D LEED ++ DL +E +G G
Sbjct: 59 VKFEGIDDRDASEAANGIELYGEADDPEDM-LEEDAWYPKDLVGLEARLAEGNGLGLPAG 117
Query: 118 QVCG-VYNF--GAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
QV G V + A ++L+I+ E T L+PF V +++L+E + ID
Sbjct: 118 QVIGKVVDVLDSAQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTID 177
Query: 164 P 164
P
Sbjct: 178 P 178
>gi|18310692|ref|NP_562626.1| 16S rRNA-processing protein [Clostridium perfringens str. 13]
gi|110800602|ref|YP_696397.1| 16S rRNA-processing protein RimM [Clostridium perfringens ATCC
13124]
gi|168207939|ref|ZP_02633944.1| 16S rRNA processing protein RimM [Clostridium perfringens E str.
JGS1987]
gi|168210657|ref|ZP_02636282.1| 16S rRNA processing protein RimM [Clostridium perfringens B str.
ATCC 3626]
gi|168216997|ref|ZP_02642622.1| 16S rRNA processing protein RimM [Clostridium perfringens NCTC
8239]
gi|182625872|ref|ZP_02953638.1| 16S rRNA processing protein RimM [Clostridium perfringens D str.
JGS1721]
gi|21362851|sp|Q8XJP6|RIMM_CLOPE RecName: Full=Ribosome maturation factor rimM
gi|122958814|sp|Q0TPP3|RIMM_CLOP1 RecName: Full=Ribosome maturation factor rimM
gi|18145373|dbj|BAB81416.1| probable 16S rRNA processing protein [Clostridium perfringens str.
13]
gi|110675249|gb|ABG84236.1| 16S rRNA processing protein RimM [Clostridium perfringens ATCC
13124]
gi|170660750|gb|EDT13433.1| 16S rRNA processing protein RimM [Clostridium perfringens E str.
JGS1987]
gi|170711249|gb|EDT23431.1| 16S rRNA processing protein RimM [Clostridium perfringens B str.
ATCC 3626]
gi|177908906|gb|EDT71398.1| 16S rRNA processing protein RimM [Clostridium perfringens D str.
JGS1721]
gi|182380889|gb|EDT78368.1| 16S rRNA processing protein RimM [Clostridium perfringens NCTC
8239]
Length = 165
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
++ L+++ I THGL GE+ + + D YV+ ++ +K ++ + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKD--KVI 58
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++
Sbjct: 59 LKLEGINSIEEAEKLKRTYLEIEREDAI--ELEEDEYFIVDLVGCTVVDTEGFEYGKIKD 116
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + ++ +K L+P K VL++N+ E I I P
Sbjct: 117 VIQTPSNDVYWVQG--KKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|242277677|ref|YP_002989806.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
gi|242120571|gb|ACS78267.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
Length = 185
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNK-RF 60
+++++A + HGL GEV I+S+A++P + Y+ +++ RK+K R
Sbjct: 2 EMLVVAEVVKPHGLRGEVCIESHADSPFLFDEVPCLYLAKKGQKPRRFVVRSSRKHKGRV 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G+++ A LR +++ + D E +DE + +LE M G G +
Sbjct: 62 LLTFKGVEDRDQAENLRGMEILVREADLP--ESGDDEVYMYELEGMSVELEDGTVVGTIS 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
I + K L P + VL V+L K++++P
Sbjct: 120 NFILAPGQETWVISSAEGKEILFPAVEEFVLSVDLDAEKVVVEP 163
>gi|115351000|ref|YP_772839.1| 16S rRNA-processing protein RimM [Burkholderia ambifaria AMMD]
gi|115280988|gb|ABI86505.1| 16S rRNA processing protein RimM [Burkholderia ambifaria AMMD]
Length = 237
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 60 DDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHG 119
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 120 DTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 177
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 178 TVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 231
>gi|289550971|ref|YP_003471875.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
gi|289180503|gb|ADC87748.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
Length = 166
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
V + I THG+ GEV + S+++ P ++ + ++NDN EL + YR +K F
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEV-LTLKHNNDNVELTVTS-YRIHKGFH 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G DNI+ + LY +R D + EL E EF+ +D+ F+ + G+V
Sbjct: 61 MLKFEGFDNINDVESYKGDYLYQER-DHEGIELAEHEFYYSDIIGCTVFNGEIPI-GRVT 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K ++IP+ V +V+++ I+I P+ L+
Sbjct: 119 NIIETGANDVWVVKG--DKEYMIPYIADVVKDVDIENKTIMITPLEGLLD 166
>gi|254252904|ref|ZP_04946222.1| RIMM_BURS3 Probable 16S rRNA-processing protein rimM [Burkholderia
dolosa AUO158]
gi|124895513|gb|EAY69393.1| RIMM_BURS3 Probable 16S rRNA-processing protein rimM [Burkholderia
dolosa AUO158]
Length = 226
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ ++ R+ L R R+++
Sbjct: 50 DDAVEVGAVVDAYGLKGWIKVAAHADAGRGGDALLNARRWWLERGAERLSARLVQSKTHG 109
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ ++Q G
Sbjct: 110 DTVVAQPAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLDVVNQQSVALG 167
Query: 118 QVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
QV G+ + GA SI+ ++ T E+ LIPF V V+ +I++D
Sbjct: 168 QVIGMIDNGAHSIMRVEYPAIGKDGRPGTAER--LIPFVGVYVKTVDRAARRIVVD 221
>gi|169342654|ref|ZP_02863696.1| 16S rRNA processing protein RimM [Clostridium perfringens C str.
JGS1495]
gi|169299160|gb|EDS81230.1| 16S rRNA processing protein RimM [Clostridium perfringens C str.
JGS1495]
Length = 165
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
++ L+++ I THGL GE+ + + D YV+ ++ +K ++ + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKIKVEGVKYFKD--KVI 58
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++
Sbjct: 59 LKLQGINSIEEAEKLKRTYLEIEREDAI--ELEEDEYFIVDLVGCTVVDTEGFEYGKIKD 116
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + ++ +K L+P K VL++N+ E I I P
Sbjct: 117 VIQTPSNDVYWVQG--KKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|328885335|emb|CCA58574.1| 16S rRNA processing protein RimM [Streptomyces venezuelae ATCC
10712]
Length = 183
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + D L I + R +
Sbjct: 1 MVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLLTDPASAGPLTIETGRVHSGRLLLR 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++A LR++ L A+ + E EEDE+++ L +++ G G++ +
Sbjct: 61 FEGVRDRNAAEALRNILLIAEVDPTELPE-EEDEYYDHQLMDLDVVLADGTEIGRITEIS 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +IDP
Sbjct: 120 HLPSQDLFIVERPDGTELMIPFVESIVTEIDLEEQRAVIDP 160
>gi|209573747|sp|Q0BH68|RIMM_BURCM RecName: Full=Ribosome maturation factor rimM
Length = 226
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 TVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|303327977|ref|ZP_07358416.1| 16S rRNA processing protein RimM [Desulfovibrio sp. 3_1_syn3]
gi|302861803|gb|EFL84738.1| 16S rRNA processing protein RimM [Desulfovibrio sp. 3_1_syn3]
Length = 171
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDN--RELRILKMYRKNKRFIAT 63
++ M T+ HG+ GE+ ID +A++P+ L+ + L + D R +R L R R +
Sbjct: 1 MIHMGTLARPHGIKGEICIDWHADSPLLLDAPLWLQAGDEPPRLVRALSCRRHKGRPLLL 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + +A LR K+ R +EDE + DL E F G+ G++ V
Sbjct: 61 LEGVTDRTAAEALRGQKILVSRDSLPPP--DEDEAYLEDLLGCEVFLPDGRRLGRLDHVE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
I I ++ L P ++ +L + IDP
Sbjct: 119 YPADQEIWVIVTEQDQEILFPAQPCFIVGFDLDARTVTIDP 159
>gi|170700971|ref|ZP_02891953.1| 16S rRNA processing protein RimM [Burkholderia ambifaria IOP40-10]
gi|170134111|gb|EDT02457.1| 16S rRNA processing protein RimM [Burkholderia ambifaria IOP40-10]
Length = 225
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 TVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|146308419|ref|YP_001188884.1| 16S rRNA-processing protein [Pseudomonas mendocina ymp]
gi|166226467|sp|A4XXT6|RIMM_PSEMY RecName: Full=Ribosome maturation factor rimM
gi|145576620|gb|ABP86152.1| 16S rRNA processing protein RimM [Pseudomonas mendocina ymp]
Length = 178
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSN-DNRELRILKMYRKNKRFIA 62
L+++ I + HG+ GEV + S+ + N +D + L + + +++ + + K +A
Sbjct: 11 LIVLGKIVSVHGVRGEVKVYSFTDPIDNVLDYRHWTLRRDGEVKKVELASGRLQGKVLVA 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ A ++ R + D LEE EF+ L+ ++ D+ G+ G V +
Sbjct: 71 KLKGLDDREIARTYAGFEICVPRSELPD--LEEGEFYWYQLQGLKVIDQAGQLLGVVDHL 128
Query: 123 YNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 129 FETGANDVMVVKACAGSLDDRERLLPYTDQCVLSIDLAAGEMRVD 173
>gi|228475074|ref|ZP_04059802.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
gi|228271059|gb|EEK12447.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
Length = 166
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IA 62
V + I THG+ GE+ + S + + ++ ++ + E+ + + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDTRFQPGEVLIVNHHHNEIEMTITSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ + + L+ +R D +D EL E+EF+ +D+ F+ G+V +
Sbjct: 63 KFEGINNINDIEQYKGDYLFQER-DHEDIELNENEFYYSDIIGCTVFNNDTPI-GRVINI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + +K +K +LIP+ V EV+++ I I P+ L
Sbjct: 121 FETGANDVWVVKG--DKEYLIPYIADVVKEVDVEHKTICITPMEGLL 165
>gi|291527946|emb|CBK93532.1| 16S rRNA processing protein RimM [Eubacterium rectale M104/1]
Length = 168
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSN--DNRELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ + V+ N + R+L I + +
Sbjct: 1 MEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G +
Sbjct: 61 VILKFKGIDDINDVEKYKKAPLFVTRENAV--PLEENEYFIADLIGLSVTSDEGEELGVI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K LIP K +L+V++ EN + + AGL
Sbjct: 119 ADVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDV-ENGTMKVHLLAGL 167
>gi|171321194|ref|ZP_02910165.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MEX-5]
gi|171093532|gb|EDT38700.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MEX-5]
Length = 225
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 49 DDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 TVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|290893076|ref|ZP_06556065.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|290557436|gb|EFD90961.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|307571375|emb|CAR84554.1| 16S rRNA processing protein [Listeria monocytogenes L99]
Length = 169
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K D LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|308048459|ref|YP_003912025.1| 16S rRNA processing protein RimM [Ferrimonas balearica DSM 9799]
gi|307630649|gb|ADN74951.1| 16S rRNA processing protein RimM [Ferrimonas balearica DSM 9799]
Length = 175
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFI 61
+L+++ +G+ +G+ G + ++++ ++ + Y VL+ + +E+++ R N I
Sbjct: 5 ELIVVGRLGSAYGIRGWLKVNAFTDSLEGIFEYSPWLVLHQGEWQEMKVADWRRHNNGII 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+G+++ + A + + + E L EDEF+ DL + QG G+V G
Sbjct: 65 CRLAGVEDRNQAEQYINCDVAILPAQL--EALPEDEFYWRDLVGCTVVNTQGYDMGKVTG 122
Query: 122 VYNFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
+ G+ +LE++ F LIPF T+ +LEV+ KI++D
Sbjct: 123 LLETGSNDVLEVEAKSNDAFGKRERLIPFVTEQFILEVDTLGKKIVVD 170
>gi|319786604|ref|YP_004146079.1| 16S rRNA processing protein RimM [Pseudoxanthomonas suwonensis
11-1]
gi|317465116|gb|ADV26848.1| 16S rRNA processing protein RimM [Pseudoxanthomonas suwonensis
11-1]
Length = 190
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRF 60
K++L+ + G+ G+V ++S+ + RY + + RELR K K
Sbjct: 26 KMILLGRVTGAFGVRGDVKVESWTEPRAQIFRYQPWILRAPNGAERELRGAKGRDTGKHV 85
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+AT G D+ +A LR +++ R E++ DLE ++ +G G+V
Sbjct: 86 VATLPGCDDRDAAEALRGTEIWVPRDVLPPP--APGEYYWVDLEGLKVVTVEGVALGEVS 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFA-VLEVNLQENKILID 163
+ + GA +L ++ E+ +IPF + V V+ I +D
Sbjct: 144 HLLSTGANDVLVVRGERER--MIPFVQPDYVTSVDFDTATITVD 185
>gi|315282787|ref|ZP_07871115.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
gi|313613566|gb|EFR87382.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
Length = 172
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINTNDKKITIEVMEGLLD 172
>gi|107022148|ref|YP_620475.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia AU 1054]
gi|122979075|sp|Q1BY03|RIMM_BURCA RecName: Full=Ribosome maturation factor rimM
gi|105892337|gb|ABF75502.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia AU 1054]
Length = 225
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI++ ++
Sbjct: 49 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTRS 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAQPAGVSDRDAALSMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 KVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|209573745|sp|Q1GYT7|RIMM_METFK RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRE------LRIL 51
M + +LV+M I +G+ G V + Y ++ D R++L D ++ +
Sbjct: 1 MQIVSELVIMGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVE 60
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
K N + GID+ A + + + R + E EE E++ +DL ++ ++
Sbjct: 61 KAKVHNDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELP--EPEEGEYYWSDLIGLQVRNQ 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
Q +GQV V+ GA +L +K E+ L+PF VLEV+ +L+D
Sbjct: 119 QEVDFGQVVDVFATGANDVLVVKGDRER--LVPFIGQVVLEVDTDGKTMLVD 168
>gi|167758977|ref|ZP_02431104.1| hypothetical protein CLOSCI_01323 [Clostridium scindens ATCC 35704]
gi|167663384|gb|EDS07514.1| hypothetical protein CLOSCI_01323 [Clostridium scindens ATCC 35704]
Length = 168
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRI-LKMYRKN 57
+++L+ + I +THG+ GEV + + D R+ V+ L + ++ +
Sbjct: 1 MEELLQVGVITSTHGIRGEVKVFPTTD---DAKRFRELKDVMLDTGKETLSLEIEGVKFF 57
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K+F I F GIDNI+ + L+ R+D ELEEDE+F D+ M+ +G+ +
Sbjct: 58 KQFVILKFKGIDNINDVERYKRCPLFVNREDAV--ELEEDEYFIADMIGMKVITDEGEEF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V GA + I+ LIP K +L+V++ +++ + AGL
Sbjct: 116 GTLKDVMETGANDVYVIRRADGGEVLIPAIKECILDVDIP-GRLMKIHVMAGL 167
>gi|229818298|ref|ZP_04448579.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098]
gi|229784168|gb|EEP20282.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098]
Length = 204
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNK-RF 60
+L+ + IG G+ GEV + + + P R+ L+S + + +++ R K R+
Sbjct: 14 ELLRVCRIGRAQGMKGEVTVQVFTDEP--EWRFEPGSELFSRNGEQRYVVERSRTFKNRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL--------EEMETFDRQ 112
I G D+ +++ L +LY + D +D LE DE++ DL EE E
Sbjct: 72 IIKLEGCDDRNASEALNGTELYGEADDPEDM-LEADEWYPKDLIGLEARMDEENEIGAPA 130
Query: 113 GKYWGQVCGVYNFGAGSILEIKNT--------------MEKTFLIPFTKFAVLEVNLQEN 158
GK G V V + A S+L+I+ T +EKT L+PF V ++L+E
Sbjct: 131 GKPIGMVVDVIDSPAQSLLKIRLTEPVETGTASDGTPIVEKTTLVPFVDELVPLIDLEEG 190
Query: 159 KILIDP 164
+ +DP
Sbjct: 191 YLTLDP 196
>gi|210615862|ref|ZP_03290824.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
gi|210150065|gb|EEA81074.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
Length = 168
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRI-LKMYRKN 57
+++L+ + I +THG+ GEV + + D+ R+ V+ +L + ++ +
Sbjct: 1 MEQLLQVGVISSTHGVRGEVKVFPTTD---DVKRFKKLKKVILDTGKEQLPLEIEGVKFF 57
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K+F I F GIDNI+ + + +L R+ +L++DE+F D+ M+ F G+ +
Sbjct: 58 KQFVILKFRGIDNINDIEKYKGKRLLVDRE--HAVKLKKDEYFIADMIGMDVFTEDGELF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G + V GA + I+ + K L+P K +L+V+++ K++I
Sbjct: 116 GALKDVMETGANDVYIIEMSDGKEVLVPAIKQCILDVDIENRKMVI 161
>gi|29829184|ref|NP_823818.1| 16S rRNA-processing protein RimM [Streptomyces avermitilis MA-4680]
gi|48474815|sp|Q82JW2|RIMM_STRAW RecName: Full=Ribosome maturation factor rimM
gi|29606290|dbj|BAC70353.1| putative 16S rRNA processing protein [Streptomyces avermitilis
MA-4680]
Length = 186
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYR---KNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D + L + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASVGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEE-DEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ + + A LR+ L A+ DE E+ DE+++ L +++ + G G++ +
Sbjct: 63 FEGVRDRNGAEALRNTLLIAEVD--PDEVPEDPDEYYDHQLMDLDVVTKDGTEVGRITEI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ + IPF + V+E++L+E + +IDP
Sbjct: 121 SHLPSQDLFVVERSDGSEVYIPFVEEIVVEIDLEEQRAVIDP 162
>gi|88808142|ref|ZP_01123653.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
gi|88788181|gb|EAR19337.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
Length = 190
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYV-LYSNDNRELRILKMYRKNKR 59
D + + + GL GE+ ++ ++ P R++ + RE+ + ++ +
Sbjct: 19 DHWLPVGKVVGAQGLRGELRVNPASDFPERFTQPGPRWLQTQGSPPREIELTSGRQQPGK 78
Query: 60 --FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYW 116
FI F GIDN SA L L + D +LEE EF DL +E R+ +
Sbjct: 79 SLFIVRFKGIDNRSSAEALVGQTLLVRADDRP--QLEEGEFHLLDLVGLEARLSREAEAI 136
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V + + G +LEI + L+PF + V EVNLQ+ IL+ P
Sbjct: 137 GTVTDLIS-GGNDLLEITRPDGRKLLVPFVEAIVPEVNLQDGWILLTP 183
>gi|229592397|ref|YP_002874516.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens SBW25]
gi|259585649|sp|C3K1H0|RIMM_PSEFS RecName: Full=Ribosome maturation factor rimM
gi|229364263|emb|CAY51980.1| 16S rRNA processing protein [Pseudomonas fluorescens SBW25]
Length = 178
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L +Y ++ +++ ++ +K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKTWTLKREGSVKQVELVSGRGSDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ LE ++ D+ G+ +G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLEGLKVIDQLGQLFGKID 126
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+TK VL V+L+ ++ ++
Sbjct: 127 HLLETGANDVMVVKPCAGSLDDRERLLPYTKQCVLAVDLEAGEMKVE 173
>gi|47097598|ref|ZP_00235125.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258611625|ref|ZP_05234263.2| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258612340|ref|ZP_05270099.2| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
gi|47014029|gb|EAL05035.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258601991|gb|EEW15316.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258611013|gb|EEW23621.1| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
Length = 169
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K D LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKETQLTD--LEENEFYFHEIIGCTVVTTDGEELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 169
>gi|296285087|ref|ZP_06863085.1| 16S rRNA processing protein [Citromicrobium bathyomarinum JL354]
Length = 159
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIATFSGID 68
MA + HG+ GEV + + ++ L + + ND +L K+ NK IA F+ +
Sbjct: 1 MAAVTGAHGVAGEVRLKLFGDDVDALKAHKTF-NDG-QLTASKIRSDNKGGAIARFAEVP 58
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR L R LEE EF++ DL + G G V V N+GA
Sbjct: 59 DRTAAEALRGTLLSVSRDALP--ALEEGEFYHADLIGLPVVTTDGAAVGHVIDVANYGAT 116
Query: 129 SILEIKNTM-----EKTFLIPFTKFAVLE 152
I+EI + KTF++P AV E
Sbjct: 117 DIVEIAHDPVPEKGPKTFMVPMIPTAVPE 145
>gi|329770416|ref|ZP_08261798.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
gi|328836539|gb|EGF86199.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
Length = 169
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR--ELRILKMYRKNK-RFIAT 63
+ I TH L GEV + S + +L + N+ E +++ YR +K +
Sbjct: 5 VGKIVNTHSLRGEVKVISSTDFEEERFKKGSKLLITRGNQVIEEVVVESYRSHKNSLLVK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID+I+ A + ++L+L ++ ELEE+EF+ ++ FD G+V +
Sbjct: 65 FEGIDSINEAEKFKNLQLKVDSENIS--ELEENEFYFHEIIGCRVFDENNMLLGEVVEIL 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK K LIP+ V V++Q KI I+ I GL
Sbjct: 123 TPGANDVWVIKGENGKEILIPYIVDVVKNVDVQNKKIDIE-IMEGL 167
>gi|168214187|ref|ZP_02639812.1| 16S rRNA processing protein RimM [Clostridium perfringens CPE str.
F4969]
gi|170714269|gb|EDT26451.1| 16S rRNA processing protein RimM [Clostridium perfringens CPE str.
F4969]
Length = 165
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
++ L+++ I THGL GE+ + + D YV+ ++ +K ++ + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKD--KVI 58
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++
Sbjct: 59 LKLEGINSIEEAEKLKRTYLEIEREDAI--ELEEDEYFIVDLVGCTVVDTEGFEYGKIKD 116
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + ++ +K L+P K VL +N+ E I I P
Sbjct: 117 VIQTPSNDVYWVQG--KKEVLVPVLKDIVLNINMDEKLITIRP 157
>gi|257877633|ref|ZP_05657286.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
gi|257811799|gb|EEV40619.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
Length = 174
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-ILKMYRKNKRF-IAT 63
+ I THG+ GEV + S + P + R L+ + L I+ +RK+K F + T
Sbjct: 7 VGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPLPLIVSGHRKHKNFDLLT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G NI+ R+ L + D D L E+EF+ ++ +E + G G+V +
Sbjct: 67 FEGYSNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTVIGKVKEIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + ++ +K LIP+ + V ++L+ ++ ++ I GL
Sbjct: 125 SPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVE-IPEGL 169
>gi|170077861|ref|YP_001734499.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
gi|209573625|sp|B1XKY8|RIMM_SYNP2 RecName: Full=Ribosome maturation factor rimM
gi|169885530|gb|ACA99243.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
Length = 175
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRK---NKRF 60
+++ + GL GEV I+ + P + R++ N + + L+ R+ F
Sbjct: 7 IIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGKNLF 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD--RQGKYWGQ 118
+ F I + A +R K+ + D ELE DE+ +DL +E FD Q K G
Sbjct: 67 VVKFEHIQDRTQAENIRGAKVLVRAGDRP--ELEADEYHVSDLIGLEVFDYNTQAKL-GI 123
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V +Y A +LE+ + +K L+PF K V V+L EN++ +D
Sbjct: 124 VSDLYT-AAQDVLEVTDANQKKHLVPFVKAIVPVVDLVENRLEVD 167
>gi|257867551|ref|ZP_05647204.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257873880|ref|ZP_05653533.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
gi|257801607|gb|EEV30537.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257808044|gb|EEV36866.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
Length = 174
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-ILKMYRKNKRF-IAT 63
+ I THG+ GEV + S + P + R L+ + L I+ +RK+K F + T
Sbjct: 7 VGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPLPLIVSGHRKHKNFDLLT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G NI+ R+ L + D D L E+EF+ ++ +E + G G+V +
Sbjct: 67 FEGYPNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTVIGKVKEIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + ++ +K LIP+ + V ++L+ ++ ++ I GL
Sbjct: 125 SPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVE-IPEGL 169
>gi|46908025|ref|YP_014414.1| 16S rRNA-processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47094472|ref|ZP_00232150.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293596406|ref|ZP_05231381.2| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
gi|293597068|ref|ZP_05267001.2| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|59798758|sp|Q71YM3|RIMM_LISMF RecName: Full=Ribosome maturation factor rimM
gi|46881295|gb|AAT04591.1| 16S rRNA processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47017155|gb|EAL08010.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293585205|gb|EFF97237.1| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|293595620|gb|EFG03381.1| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
Length = 169
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K D LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|187778961|ref|ZP_02995434.1| hypothetical protein CLOSPO_02556 [Clostridium sporogenes ATCC
15579]
gi|187772586|gb|EDU36388.1| hypothetical protein CLOSPO_02556 [Clostridium sporogenes ATCC
15579]
Length = 164
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+ + + + I THG+ GEV + + D+ R+ D E +I+ +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVFIDGEERKIVSCKLQPNNV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+I A++ R L KR++ +L + +F DL E D +G+ GQ+
Sbjct: 58 VLKIDGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLMECRVIDEEGREIGQIS 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V G+ + E+K +E L+P K V ++++ + I P+
Sbjct: 116 DVIKTGSNDVYEVKGKIE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|86742273|ref|YP_482673.1| 16S rRNA-processing protein RimM [Frankia sp. CcI3]
gi|109893016|sp|Q2J6Z8|RIMM_FRASC RecName: Full=Ribosome maturation factor rimM
gi|86569135|gb|ABD12944.1| 16S rRNA processing protein RimM [Frankia sp. CcI3]
Length = 179
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE-----LRILKMYRKNKRFIA 62
+++ IG HG+ GEV I+ + P R+V+ + RE L + + + R +
Sbjct: 5 IVVGRIGRPHGIRGEVTIEIRTDVP--HRRFVVGAVLGREGGGTALTVSGAHWHSGRLLL 62
Query: 63 TFSGIDNIHSASELRDLKL------YAKRQDFKDEELEEDE-FFNTDLEEMETFDRQGKY 115
F G+D+ +A LR + L D D + E E +++ DL + G
Sbjct: 63 HFRGVDDRGAAEALRGVLLTIDADQAGSPLDDADGDGEAVEMWWDRDLVGLRAVTTAGML 122
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V + + AG +L I L+PF + V V+ +I++DP
Sbjct: 123 LGHVTDIIHSPAGDLLAIGGPDGGEHLVPFVRDIVPTVDPPAGRIVVDP 171
>gi|68171521|ref|ZP_00544901.1| RimM protein:PRC-barrel [Ehrlichia chaffeensis str. Sapulpa]
gi|88658505|ref|YP_506837.1| 16S rRNA processing protein RimM [Ehrlichia chaffeensis str.
Arkansas]
gi|109893015|sp|Q2GI96|RIMM_EHRCR RecName: Full=Ribosome maturation factor rimM
gi|67999049|gb|EAM85720.1| RimM protein:PRC-barrel [Ehrlichia chaffeensis str. Sapulpa]
gi|88599962|gb|ABD45431.1| 16S rRNA processing protein RimM [Ehrlichia chaffeensis str.
Arkansas]
Length = 175
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRFIATFS 65
L+ + I ++HG++G V I ++ NP D Y ++ + + IA
Sbjct: 5 LICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIIIAQIK 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI + A LR+ K + ++ + +DEF+ +DL + +G + ++NF
Sbjct: 65 GIVSRTDADLLRNKKFFVEKNKLPNPT-NDDEFYYSDLIGLNVVLENNNVYGNIKKIHNF 123
Query: 126 GAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ I+EI+ + +K+ ++PFTK VN++E I+I
Sbjct: 124 GSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYIII 161
>gi|16800973|ref|NP_471241.1| 16S rRNA-processing protein RimM [Listeria innocua Clip11262]
gi|21362865|sp|Q92AL5|RIMM_LISIN RecName: Full=Ribosome maturation factor rimM
gi|16414408|emb|CAC97137.1| lin1907 [Listeria innocua Clip11262]
Length = 172
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G+ IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V ++N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKDINTNDKKITIEVMEGLLD 172
>gi|238923880|ref|YP_002937396.1| 16S rRNA-processing protein [Eubacterium rectale ATCC 33656]
gi|238875555|gb|ACR75262.1| 16S rRNA-processing protein [Eubacterium rectale ATCC 33656]
Length = 178
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSN--DNRELRILKMYRKNK 58
+++ L+ + I +THG+ GEV + ++ + V+ N + R+L I +
Sbjct: 10 RMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKN 69
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G
Sbjct: 70 QVILKFKGIDDINDVEKYKKAPLFVTRENAV--PLEENEYFIADLIGLSVTSDEGEELGV 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ V GA + +K LIP K +L+V++ EN + + AGL
Sbjct: 128 IDDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDV-ENGTMKVHLLAGL 177
>gi|16803833|ref|NP_465318.1| 16S rRNA-processing protein RimM [Listeria monocytogenes EGD-e]
gi|224500788|ref|ZP_03669137.1| 16S rRNA-processing protein [Listeria monocytogenes Finland 1988]
gi|224503775|ref|ZP_03672082.1| 16S rRNA-processing protein [Listeria monocytogenes FSL R2-561]
gi|254831606|ref|ZP_05236261.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 10403S]
gi|21362860|sp|Q8Y6A2|RIMM_LISMO RecName: Full=Ribosome maturation factor rimM
gi|16411247|emb|CAC99871.1| lmo1793 [Listeria monocytogenes EGD-e]
Length = 172
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKN 57
++K+ + I THGL GE+ + + + P + Y+ N + E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K + LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTN--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 172
>gi|254458776|ref|ZP_05072200.1| 16S rRNA processing protein RimM [Campylobacterales bacterium GD 1]
gi|207084542|gb|EDZ61830.1| 16S rRNA processing protein RimM [Campylobacterales bacterium GD 1]
Length = 180
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL-NRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
+ATIG T G+ G++ + + P + +N N + + + ++R + +GI+
Sbjct: 12 IATIGKTVGIKGDLKFHIHCDFPEQFQDNSTFLTNKNNTITLSDV--NHERSLIKIAGIN 69
Query: 69 NIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
I A + ++KLY R++ K+ L + EFF DLE+ E F+ GK G V V
Sbjct: 70 TIEDAKKFTNIKLYTTREETRKNCHLNDGEFFWFDLEDCEVFE-DGKLLGVVNEVERITI 128
Query: 128 GSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ L +K E K+FLIPF K +L ++ + I +D
Sbjct: 129 SNYLNVKTNEELVKSGSAKSFLIPFHKPFILNTDIDKKIITVD 171
>gi|161525403|ref|YP_001580415.1| 16S rRNA-processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|189349860|ref|YP_001945488.1| 16S rRNA-processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|221201284|ref|ZP_03574324.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2M]
gi|221206262|ref|ZP_03579275.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2]
gi|209573548|sp|A9ADT0|RIMM_BURM1 RecName: Full=Ribosome maturation factor rimM
gi|160342832|gb|ABX15918.1| 16S rRNA processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|189333882|dbj|BAG42952.1| 16S rRNA processing protein [Burkholderia multivorans ATCC 17616]
gi|221173571|gb|EEE06005.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2]
gi|221179134|gb|EEE11541.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2M]
Length = 223
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ + R+ L R RI++
Sbjct: 47 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTHG 106
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ + Q G
Sbjct: 107 DTVVAQPAGVGDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLDVVNEQSATLG 164
Query: 118 QVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V G+ + GA SI+ ++ LIPF V V+ +I++D
Sbjct: 165 KVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVD 218
>gi|302558141|ref|ZP_07310483.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
gi|302475759|gb|EFL38852.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
Length = 191
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTDPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + + A LR+ L A D + +EDE+++ L +++ + G+ G++ +
Sbjct: 63 FEGVRDRNGAEALRNTLLIAD-VDPDERPEDEDEYYDHQLIDLDVVTKDGEEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + ++ +PF + V E++L+E + +IDP +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVYVPFVEEIVTEIDLEEQRAVIDPPPGLIDDRAETASARDAAE 181
Query: 184 DSAG 187
D G
Sbjct: 182 DERG 185
>gi|325571318|ref|ZP_08146818.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
gi|325155794|gb|EGC67990.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
Length = 174
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-ILKMYRKNKRF-IAT 63
+ I THG+ GEV + S + P + R L+ + + I+ +RK+K F + T
Sbjct: 7 VGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPITLIVSGHRKHKNFDLVT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G NI+ R+ L + D D L E+EF+ ++ +E + G G+V +
Sbjct: 67 FEGYPNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTIIGKVKEIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + ++ +K LIP+ + V ++L+ ++ ++ I GL
Sbjct: 125 SPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVE-IPEGL 169
>gi|322418206|ref|YP_004197429.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
gi|320124593|gb|ADW12153.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
Length = 172
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDN--RELRILKMYRKNKRF 60
K VL+ I HG+ G++ + +A + LN L S E ++ KR
Sbjct: 5 KKVLIGKIQGPHGIRGQLRVIPFAGDASSISQLNSVFLKSPKGAMEEYSVVSAKNNGKRI 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T DNI+ L ++YA R D L +DEF+ +DL ++ G+ G++
Sbjct: 65 ILTLKPFDNINQVLHLVGSEIYADRVALPD--LPDDEFYWSDLLGLQVVTSDGEELGELV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + +K+ + LIP + VL V+L E ++ +
Sbjct: 123 DIIETGSNDVYVVKHN-GREVLIPALEDVVLSVDLAEGRMTV 163
>gi|254245968|ref|ZP_04939289.1| RimM protein [Burkholderia cenocepacia PC184]
gi|124870744|gb|EAY62460.1| RimM protein [Burkholderia cenocepacia PC184]
Length = 226
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI++ +
Sbjct: 50 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHS 109
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 110 DTVVAQPAGVSDRDAALSMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 167
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 168 KVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 221
>gi|170732381|ref|YP_001764328.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia MC0-3]
gi|209573546|sp|B1JXU4|RIMM_BURCC RecName: Full=Ribosome maturation factor rimM
gi|169815623|gb|ACA90206.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia MC0-3]
Length = 225
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI++ +
Sbjct: 49 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHS 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAQPAGVSDRDAALSMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 KVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|315303689|ref|ZP_07874207.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
gi|313627938|gb|EFR96553.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
Length = 172
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYV-LYSNDNR--ELRILKMYRKN 57
++K+ + I THGL GE+ + + +AN + V L+ +++ E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFANERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKISEKQLTD--LEENEFYFHEIIGCSVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGNDKKEKLIPXXXDVVKEINISDKKITIEVMEGLLD 172
>gi|295397869|ref|ZP_06807932.1| 16S rRNA processing protein RimM [Aerococcus viridans ATCC 11563]
gi|294973914|gb|EFG49678.1| 16S rRNA processing protein RimM [Aerococcus viridans ATCC 11563]
Length = 191
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLV-----LMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR-ELRI 50
MVK++ + L+ I T L GEV + + + P + R +++ D E
Sbjct: 1 MVKIEGMAEEQYYLVGKIVNTQALRGEVRVMATTDFPEERFRIGATLAIFNGDKLVETVE 60
Query: 51 LKMYRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF 109
+ +R +K F + F G DNI+ + + L + + +EL+E+EF+ D+ +E +
Sbjct: 61 VDGHRLHKNFNLLHFKGKDNINDVEKFKGFDLKVAGTEREADELDENEFYYDDIIGLEVY 120
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPI 165
Y G+V + + + + I+ + K LIP+ + VLE++L +N+++IDP+
Sbjct: 121 TTDETYLGKVREITSLPSNDVWAIQRPNKGKDILIPYIEDIVLEIDLDDNRVVIDPM 177
>gi|73542224|ref|YP_296744.1| 16S rRNA-processing protein [Ralstonia eutropha JMP134]
gi|109893038|sp|Q46Y83|RIMM_RALEJ RecName: Full=Ribosome maturation factor rimM
gi|72119637|gb|AAZ61900.1| 16S rRNA processing protein RimM [Ralstonia eutropha JMP134]
Length = 221
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL------------- 48
D LV + +G +G+ G + ++ +AN+ L R+ L + L
Sbjct: 39 DDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTPPQAGLVATAEASRAQAVC 98
Query: 49 -RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
R+ + + +A +G+ + + A L+ +++ +R DF E E+EF+ DL
Sbjct: 99 VRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPE--ENEFYWVDLIGCA 156
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL++ + L+PF + V+ +I++D
Sbjct: 157 VSNEQGELLGEVSGLIDNGAHQILQVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVVD 216
>gi|226325146|ref|ZP_03800664.1| hypothetical protein COPCOM_02938 [Coprococcus comes ATCC 27758]
gi|225206494|gb|EEG88848.1| hypothetical protein COPCOM_02938 [Coprococcus comes ATCC 27758]
Length = 170
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNR---ELRILKMYRKNKRF 60
+ I +THG+ GEV + ++P NR+ VL + + E+ +K +++
Sbjct: 9 VGVITSTHGIKGEVKVFPTTDDP---NRFRALKDVVLDTGKEQIPLEIEGVKFFKQ--YV 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GIDNI+ + R + L R++ ELEEDE++ D+ M+ + G+ +G +
Sbjct: 64 ILKFKGIDNINDIEKYRKMPLLVSRENAV--ELEEDEYYMADIIGMDVYTEDGEKFGVLE 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA + + L+P +L+V+ + K+ +
Sbjct: 122 DIMETGANDVYVVSTEAHTEVLLPAIHDCILDVDTENRKMTV 163
>gi|221213541|ref|ZP_03586515.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD1]
gi|221166330|gb|EED98802.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD1]
Length = 223
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ + R+ L R RI++
Sbjct: 47 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTHG 106
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ + Q G
Sbjct: 107 DTVVAQPAGVGDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLDVVNEQSATLG 164
Query: 118 QVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V G+ + GA SI+ ++ LIPF V V+ +I++D
Sbjct: 165 KVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQTARRIVVD 218
>gi|194288940|ref|YP_002004847.1| 16S rRNA-processing protein rimm [Cupriavidus taiwanensis LMG
19424]
gi|209573574|sp|B3R397|RIMM_CUPTR RecName: Full=Ribosome maturation factor rimM
gi|193222775|emb|CAQ68778.1| 16S rRNA PROCESSING PROTEIN [Cupriavidus taiwanensis LMG 19424]
Length = 207
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL------------- 48
+ LV + +G +G+ G + + +A++ L R+ L S L
Sbjct: 26 EDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLSPPQAGLVAADAARSQPVCV 85
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+I + + +A +G+ + + A LR +++ +R DF + EDEF+ DL
Sbjct: 86 KIAQSREHSGTVVAQAAGVADRNLAEALRGRRVWIRRADFPAPD--EDEFYWVDLIGCNV 143
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL++ + LIPF + EV+ +I++D
Sbjct: 144 SNEQGELLGEVSGLIDNGAHQILQVAFVQPDGKAGERLIPFVDAFLREVDTAGKRIVVD 202
>gi|257870307|ref|ZP_05649960.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
gi|257804471|gb|EEV33293.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
Length = 174
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRI-LKMYRKNKRF-IAT 63
+ I THG+ GEV + S + P + R L+ + L + + +RK+K F + T
Sbjct: 7 VGKIVNTHGIRGEVRVISQTDFPEERYRKGQRLTLFRENKAPLELTVAGHRKHKNFDLLT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G I+ LRD L + + EL E+E++ ++ + D Q + G++ +
Sbjct: 67 FEGYPTINDVEPLRDGILKVSKDELS--ELTENEYYYHEIIGLTVIDEQARELGKIKEIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + ++ +K LIP+ + V +++L + ++ I+ I GL
Sbjct: 125 SPGANDVWVVQRKGKKDALIPYIESVVKQIDLDKGEVHIE-IPEGL 169
>gi|206561262|ref|YP_002232027.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia J2315]
gi|198037304|emb|CAR53226.1| 16S rRNA processing protein [Burkholderia cenocepacia J2315]
Length = 226
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI++ +
Sbjct: 50 DDAVEVGAVVDAYGLKGWVKVAAHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHS 109
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 110 DTVVAQPAGVSDRDAALSMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 167
Query: 118 QVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ ++ T E+ LIPF V V+ +I++D
Sbjct: 168 KVSGMIDNGVHSIMRVEYPATGKDGRPTTDER--LIPFVGVYVKTVDQAARRIVVD 221
>gi|152985572|ref|YP_001346759.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PA7]
gi|166226466|sp|A6V124|RIMM_PSEA7 RecName: Full=Ribosome maturation factor rimM
gi|150960730|gb|ABR82755.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa PA7]
Length = 175
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSN-DNRELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGETRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ G+ G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELP--SLEEGEYYWYQLEGLKVIDQGGQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|116689093|ref|YP_834716.1| 16S rRNA-processing protein [Burkholderia cenocepacia HI2424]
gi|209573547|sp|A0K5P6|RIMM_BURCH RecName: Full=Ribosome maturation factor rimM
gi|116647182|gb|ABK07823.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia HI2424]
Length = 225
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI++ +
Sbjct: 49 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHS 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAQPAGVSDRDAALSMRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 KVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|319950997|ref|ZP_08024867.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
gi|319435340|gb|EFV90590.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
Length = 177
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 16 THGLNGEVYIDSYANNPID-------LNRYVLYSN--DNRELRILKMYRKNKRFIATFSG 66
+HG+ GE+ ++ ++P + L V + +R++ + + R + +G
Sbjct: 11 SHGVRGELVVEVRTDSPEERFAPGARLTGRVGKGDRATDRDVTVEAARSHSGRLLVRLAG 70
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + +A LR + L + D E + DE+ + L + D G G+V + +
Sbjct: 71 VSDRDTADALRGMLLLVDSAELPDPE-DPDEYHDHQLVGLRVLDTSGAPLGEVTEIVHTP 129
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG +L I+ T L+PF V EV++ +IDP
Sbjct: 130 AGELLGIRLTDGADALVPFVTEMVPEVDVPGGTCVIDP 167
>gi|270284299|ref|ZP_05965884.2| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
gi|270277505|gb|EFA23359.1| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
Length = 215
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 27/181 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNK-RFI 61
L+ +A +G GL GEV + S+ + P R+ LY+ D + +++ R K R+I
Sbjct: 22 LLRVARVGRAQGLKGEVTVQSFTDEP--EYRFEPGSELYTKDGEQTFVVERSRSMKNRWI 79
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD--------RQG 113
F G+D+ +A + LY + D +D LEED ++ DL +E +
Sbjct: 80 LKFEGVDDRTAAEAINGTVLYGEADDAEDM-LEEDVWYAKDLVGLEVRMAPDNLLGLEED 138
Query: 114 KYWGQVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+V V + G +L+++ +EKT L+PF + V E++ ++ LI+
Sbjct: 139 RLIGKVVDVID-GPQWLLKVRLAEPVRDADGVVVEKTALVPFVEQIVTEIDPEQQVALIN 197
Query: 164 P 164
P
Sbjct: 198 P 198
>gi|71275921|ref|ZP_00652204.1| RimM protein:PRC-barrel [Xylella fastidiosa Dixon]
gi|71900007|ref|ZP_00682152.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|170729325|ref|YP_001774758.1| 16S rRNA-processing protein RimM [Xylella fastidiosa M12]
gi|238687916|sp|B0U289|RIMM_XYLFM RecName: Full=Ribosome maturation factor rimM
gi|71163298|gb|EAO13017.1| RimM protein:PRC-barrel [Xylella fastidiosa Dixon]
gi|71730217|gb|EAO32303.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|167964118|gb|ACA11128.1| 16S rRNA processing protein [Xylella fastidiosa M12]
Length = 170
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYRKNKR 59
++ +L+ + GL GE+ ++S+ + RY +L S E L + Y KR
Sbjct: 5 ERRILLGRVVGGFGLRGEIKMESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYDTGKR 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IATF GI++ ++ + ++Y R DE++ DLE ++ +G G V
Sbjct: 65 LIATFPGINDRNAVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVVLGSV 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
+++ GA ++ I E+ LIPF + V V+ + +I++D
Sbjct: 123 SHLFSNGANDVVVIHGERER--LIPFVQPDYVKSVDFEAERIVVD 165
>gi|291524520|emb|CBK90107.1| 16S rRNA processing protein RimM [Eubacterium rectale DSM 17629]
Length = 168
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSN--DNRELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ + V+ N + R+L I + +
Sbjct: 1 MEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G +
Sbjct: 61 VILKFKGIDDINDVEKYKKAPLFVTRENAV--PLEENEYFIADLIGLSVTSDEGEELGVI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K LIP K +L+V++ EN + + AGL
Sbjct: 119 DDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDV-ENGTMKVHLLAGL 167
>gi|289578451|ref|YP_003477078.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|297544727|ref|YP_003677029.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528164|gb|ADD02516.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|296842502|gb|ADH61018.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 167
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRK--NKRFIATF 64
+ + + HG+ GEV + N P +L ++ + R + Y K +KR
Sbjct: 7 VGKVTSAHGIKGEVKVYPLTNVPERFYELEYVWVFDDQQRPRKYDIEYVKIISKRVCVKL 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GIDN A +L+ L Q+ +LE+DE+F DL M+ + +G + G + V
Sbjct: 67 KGIDNRDEAEKLKGAFLKVDSQNAL--KLEKDEYFIKDLIGMKVYTEEGDFVGTLVEVLQ 124
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK E+ LIP K V +V++ +NK+++ + GL
Sbjct: 125 TGANDVYVIKGE-EREILIPAIKEVVKKVDV-DNKVMVVHLLEGL 167
>gi|83944835|ref|ZP_00957201.1| putative 16S rRNA processing protein [Oceanicaulis alexandrii
HTCC2633]
gi|83851617|gb|EAP89472.1| putative 16S rRNA processing protein [Oceanicaulis alexandrii
HTCC2633]
Length = 176
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK---NKRFI 61
++LV++A + HG+ G+ + + + + Y + + + + + K N I
Sbjct: 6 EELVVIAAVAGAHGVRGDAKLKPFGDA-AQVCSYGPFLDKSGAVILTPTQAKPGPNGTVI 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++ L+ + EL+EDEF+ +DL + + +G+ G++
Sbjct: 65 VRLKETLTREQVQAMKGTLLHVPHSNLP--ELDEDEFYYSDLIGLNVENLEGETLGKIKS 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V +FGAG +LEI + + +PFTK A V+L+ K++ +P
Sbjct: 123 VQDFGAGDLLEISGP-DGVWFLPFTKDAAPHVDLKAGKLVANP 164
>gi|301063497|ref|ZP_07204029.1| 16S rRNA processing protein RimM [delta proteobacterium NaphS2]
gi|300442436|gb|EFK06669.1| 16S rRNA processing protein RimM [delta proteobacterium NaphS2]
Length = 173
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL-NRYVLY----SNDNRELRILKMYRKNKR 59
D ++L + HG+ G + I S++++ L N ++ + +R +++
Sbjct: 3 DNVILFGRVLRPHGMEGLLRISSFSHSVASLLNAETVFLKLENGKSRHTKVISARPHKNI 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F+ +G+ NI A LR +Y + E DE+F +L + F G + G V
Sbjct: 63 FLVKLAGLTNIDQAEALRGADIYISKSTLVRER---DEYFWFELLGLSVFSDDGDFLGVV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ G+ I +KN E+ L+P V ++L+ K+++ P+
Sbjct: 120 SQIIPAGSNEIYVVKNK-EREILLPAAHEVVNHIDLKNGKMIVSPV 164
>gi|309389194|gb|ADO77074.1| 16S rRNA processing protein RimM [Halanaerobium praevalens DSM
2228]
Length = 170
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN-RELRILKMYRKNKRFIATFS 65
+ I G GEV + + + P DL L DN +EL I + + + I F
Sbjct: 8 IGIITRFQGNKGEVRVKATTDIPERFFDLESVYLKRRDNLKELEIDYIRFQKQFVIIKFF 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I++I A EL++ ++ + L ED F+ +DL E E + + G+Y G++ V +
Sbjct: 68 SINSIDEAEELKNYQVLIDESE--KYLLPEDNFYVSDLIESEVYLKTGEYLGKLVDVISN 125
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
I I +K ++IP + ++E+ ++ KI++DPI L+
Sbjct: 126 TGTDIFLIAGQ-KKEYMIPASHEMIIEIKVEAKKIIVDPIPGILD 169
>gi|168184652|ref|ZP_02619316.1| 16S rRNA processing protein RimM [Clostridium botulinum Bf]
gi|237795882|ref|YP_002863434.1| 16S rRNA-processing protein RimM [Clostridium botulinum Ba4 str.
657]
gi|182672310|gb|EDT84271.1| 16S rRNA processing protein RimM [Clostridium botulinum Bf]
gi|229261722|gb|ACQ52755.1| 16S rRNA processing protein RimM [Clostridium botulinum Ba4 str.
657]
Length = 164
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+ + + + I THG+ GEV + + D+ R+ D E +IL +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVFPLTD---DMKRFKKLKEVFIDGEERKILSCKLQPNNV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+I A++ R L KR++ +L + +F DL E D +G+ GQ+
Sbjct: 58 VLKIEGIDSIEEANKYRKKLLEIKREN--SIKLPKGSYFIADLIECRVIDEKGREIGQIS 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V G+ + E+K E L+P K V ++++ + I P+
Sbjct: 116 DVIKTGSNDVYEVKGKSE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|167037686|ref|YP_001665264.1| 16S rRNA-processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040347|ref|YP_001663332.1| 16S rRNA-processing protein RimM [Thermoanaerobacter sp. X514]
gi|256750720|ref|ZP_05491605.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914431|ref|ZP_07131747.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307724333|ref|YP_003904084.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|320116101|ref|YP_004186260.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326389500|ref|ZP_08211067.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
gi|238687582|sp|B0K1U8|RIMM_THEPX RecName: Full=Ribosome maturation factor rimM
gi|238687661|sp|B0K9W5|RIMM_THEP3 RecName: Full=Ribosome maturation factor rimM
gi|166854587|gb|ABY92996.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X514]
gi|166856520|gb|ABY94928.1| 16S rRNA processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750303|gb|EEU63322.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889366|gb|EFK84512.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307581394|gb|ADN54793.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|319929192|gb|ADV79877.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994505|gb|EGD52930.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
Length = 167
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRK--NKRFIATF 64
+ + + HG+ GEV + N P DL ++ + R + Y K +K
Sbjct: 7 VGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKGVCVKL 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID A +L+ L Q+ ELEE+E+F DL M+ + +G + G + V
Sbjct: 67 KGIDTRGDAEKLKGAFLKVDSQNAL--ELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLK 124
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK T E+ LIP K V +V++ +NK+++ + GL
Sbjct: 125 TGANDVYVIK-TEEREILIPAIKEVVKKVDV-DNKVMVVHLLEGL 167
>gi|297559208|ref|YP_003678182.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843656|gb|ADH65676.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 170
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSNDNRE---LRILKMYRKNKRFI 61
+++ IG HG+ G+V +D ++P R+ + + D E L ++ R + R +
Sbjct: 3 LVVGRIGRAHGVRGDVAVDVRTDDPA--ARFADGSVLATDPAEAGPLTVVSTRRHSGRLL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ + +A LR L +D E + DEF + +L + + G V
Sbjct: 61 VRFEGVADRDAAEGLRGTALLVDSEDIPPLE-DPDEFHDHELIGLAAVTTGAEPVGTVAD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + A +L + +PF V EV++ +I+IDP
Sbjct: 120 VLHH-AQDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDP 161
>gi|73662837|ref|YP_301618.1| 16S rRNA-processing protein RimM [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|109893055|sp|Q49X25|RIMM_STAS1 RecName: Full=Ribosome maturation factor rimM
gi|72495352|dbj|BAE18673.1| RimM protein required for 16S rRNA processing [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 168
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRF-I 61
V + I THG+ GE+ + S + V+ N+E + YR +K +
Sbjct: 3 VEIGKIVNTHGIKGEIKVKSNSDFTETRFQPGELVIIERKNKEPLEFTIASYRMHKGLHM 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
TF GI+NI+ L+ + +R D ++ EL E EF+ +D+ FD G+V
Sbjct: 63 LTFEGINNINDIEYLKGETIMQER-DHEEIELGEHEFYYSDIIGCTVFDDDDTPIGRVTE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ V +++++ +I I P+ L+
Sbjct: 122 IFETGANDVWVVKG--DKEYLIPYIADVVKDIDVEGRRIQITPMEGLLD 168
>gi|34499129|ref|NP_903344.1| 16S rRNA-processing protein RimM [Chromobacterium violaceum ATCC
12472]
gi|48474349|sp|Q7NRV6|RIMM_CHRVO RecName: Full=Ribosome maturation factor rimM
gi|34104980|gb|AAQ61336.1| 16S rRNA processing protein [Chromobacterium violaceum ATCC 12472]
Length = 169
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILK-MYRKNKRFIA 62
LV+M + G+ G V I + YA+ D + L N + + + + K A
Sbjct: 6 LVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQPKALAA 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ +A LR ++ R + E + E++ DL + ++QG+ G+V +
Sbjct: 66 KLEGVDDRDAAEALRGTQIAIPRSELP--EAGDGEYYWADLIGLSVVNQQGETLGKVDSL 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L +K + LIPF VLEV E +IL+D
Sbjct: 124 LETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGRILVD 164
>gi|146329006|ref|YP_001209896.1| 16S rRNA processing protein RimM [Dichelobacter nodosus VCS1703A]
gi|166985943|sp|A5EXZ2|RIMM_DICNV RecName: Full=Ribosome maturation factor rimM
gi|146232476|gb|ABQ13454.1| 16S rRNA processing protein RimM [Dichelobacter nodosus VCS1703A]
Length = 175
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIA 62
L+ + I HG+ G V I S + Y ++ + + L++L R K IA
Sbjct: 7 LIALGRIIGVHGVRGWVKIHSECRPREAIFNYSVFQATRHHHAQTLKLLDARRSGKSLIA 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+ I + +A +L L R D +L+ +++ TD+ + +R G++ G+VC +
Sbjct: 67 LFADICDRDAALQLNGFTLNVTRADLP--QLKNGQYYWTDVLGLTVINRSGEHLGKVCDI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPF 145
+ GA +L I N + +LIPF
Sbjct: 125 FETGANDVLVI-NKDGQEYLIPF 146
>gi|117928766|ref|YP_873317.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
gi|171460818|sp|A0LV71|RIMM_ACIC1 RecName: Full=Ribosome maturation factor rimM
gi|117649229|gb|ABK53331.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
Length = 176
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
V + I HG++GEV + ++P R+ VL ++ L + + + R +
Sbjct: 12 VAVGRITRAHGVHGEVGVQVRTDDPD--RRFAAGAVLTTDTGVTLTVQRTRWHSGRLLVR 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+GID+ +A +LR L+A+ D + + +E+++ L M G+ G V V
Sbjct: 70 FAGIDDRTTAEDLRGRVLFAE-VDERVRPEDPEEYYDYQLIGMRVETVTGQEIGVVREVL 128
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ +L I+ + + +PF V EV++ + ++ IDP
Sbjct: 129 HLPGQDVLAIERSADGDAFVPFVAALVPEVDVDQRRLRIDP 169
>gi|255281045|ref|ZP_05345600.1| 16S rRNA processing protein RimM [Bryantella formatexigens DSM
14469]
gi|255268493|gb|EET61698.1| 16S rRNA processing protein RimM [Bryantella formatexigens DSM
14469]
Length = 168
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+++ + + + +THG+ GEV + ++ + + + N L I ++
Sbjct: 1 MEQYLQVGVVSSTHGIRGEVKVYPTTDDAARFKKLKEVFAETKHGNVPLAIEQVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + R L R++ +L E+F DL + G+ G +
Sbjct: 61 VILKFKGIDNINDVEKYRGCPLLVTREN--AVKLAPGEYFLCDLIGLSVSTDTGEELGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + +K EK LIP TK ++EV+L++N + +
Sbjct: 119 TEVIRTGANDVYVVKTKNEKEVLIPNTKECIIEVSLEKNTMTV 161
>gi|114798866|ref|YP_758775.1| 16S rRNA processing protein RimM [Hyphomonas neptunium ATCC 15444]
gi|123323742|sp|Q0C668|RIMM_HYPNA RecName: Full=Ribosome maturation factor rimM
gi|114739040|gb|ABI77165.1| 16S rRNA processing protein RimM [Hyphomonas neptunium ATCC 15444]
Length = 181
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
K +L+ M + HG+ GEV + S+ +P L Y ++ ++ + + + +
Sbjct: 6 KTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARPGKDHF 65
Query: 63 TFSGIDNIHSAS--ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+N+ LR L+A R E +EDEF+ DL M + + +V
Sbjct: 66 IVRPKENLQKEDWDALRGCLLHASRDQLP--EADEDEFYFEDLIGMPVYTVGEEPEARVR 123
Query: 121 GVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILI 162
V NFG+G +LEI+ T +P T+ V +++ ++I+I
Sbjct: 124 AVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMAAHRIVI 166
>gi|302865889|ref|YP_003834526.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
gi|302568748|gb|ADL44950.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
Length = 179
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 15/171 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSNDN-----RELRILK 52
L+++ IG HG+ GEV ++ + P + V+ S L +
Sbjct: 2 LLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVES 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + F G+ A LR+ L D E + +EF + L + R
Sbjct: 62 ARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPE-DPEEFHDHQLVGLTVVTRD 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ G+V + + A +L ++ +T L+PF K V EV+L ++++D
Sbjct: 121 GEHVGEVARIDHAPASEMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVD 171
>gi|325263006|ref|ZP_08129742.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
gi|324032100|gb|EGB93379.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
Length = 168
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
+++ + + I +THG+ GEV + ++ L + +L + E++ +K +++
Sbjct: 1 MEQFLQVGVISSTHGIRGEVKVFPTTDDAARFKSLKQVILDTGKEHIPMEIQGVKFFKQ- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F GIDNI+ + + +L R+D LEEDE++ DL M+ + +G++ G
Sbjct: 60 -FVIVKFKGIDNINDVEKYKGKRLLVDREDAVS--LEEDEYYIADLIGMKVYTEEGEF-G 115
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ V GA + +++ LIP +L+VN++E
Sbjct: 116 MLKDVIETGANEVYVVESPDHGEVLIPAIHDCILDVNVEEQ 156
>gi|225568164|ref|ZP_03777189.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
gi|225162883|gb|EEG75502.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
Length = 168
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVL-YSNDNRELRILKMYRKNKR 59
++K++ + I +THG+ GEV + ++P L + +L D +L I + +
Sbjct: 1 MEKMLKVGVITSTHGIRGEVKVFPTTDDPGRFKVLKQVILDTGKDTLQLEIENVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + L +RQD LE+ E+F D+ M+ G+ +G +
Sbjct: 61 VILKFKGIDNINDVERYKRCALLVERQDAV--PLEDGEYFVADMLGMKVQTEDGELFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + I + L+P + + +++++ + I
Sbjct: 119 ADVMETGANDVYVIASPAHGEVLVPAIRECIQNIDIEQGMMTI 161
>gi|148380404|ref|YP_001254945.1| 16S rRNA processing protein RimM [Clostridium botulinum A str. ATCC
3502]
gi|168180673|ref|ZP_02615337.1| 16S rRNA processing protein RimM [Clostridium botulinum NCTC 2916]
gi|226949799|ref|YP_002804890.1| 16S rRNA processing protein RimM [Clostridium botulinum A2 str.
Kyoto]
gi|209573571|sp|A5I4M4|RIMM_CLOBH RecName: Full=Ribosome maturation factor rimM
gi|148289888|emb|CAL83996.1| putative 16S rRNA processing protein RimM [Clostridium botulinum A
str. ATCC 3502]
gi|182668387|gb|EDT80366.1| 16S rRNA processing protein RimM [Clostridium botulinum NCTC 2916]
gi|226843072|gb|ACO85738.1| 16S rRNA processing protein RimM [Clostridium botulinum A2 str.
Kyoto]
Length = 164
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+ + + + I THG+ GEV + + D+ R+ D E +IL +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVFIDGEERKILSCKLQPNNV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+I A++ R L KR++ +L + +F DL E D G+ GQ+
Sbjct: 58 VLKIEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQIS 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V G+ + E+K E L+P K V ++++ + I P+
Sbjct: 116 DVIKTGSNDVYEVKGKSE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|315502433|ref|YP_004081320.1| 16S rRNA processing protein rimm [Micromonospora sp. L5]
gi|315409052|gb|ADU07169.1| 16S rRNA processing protein RimM [Micromonospora sp. L5]
Length = 179
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 15/171 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSNDN-----RELRILK 52
L+++ IG HG+ GEV ++ + P + V+ S L +
Sbjct: 2 LLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVES 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + F G+ A LR+ L D E + +EF + L + R
Sbjct: 62 ARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPE-DPEEFHDHQLVGLTVVTRD 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ G+V + + A +L ++ +T L+PF K V EV+L ++++D
Sbjct: 121 GEHVGEVARIDHAPASDMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVD 171
>gi|107103259|ref|ZP_01367177.1| hypothetical protein PaerPA_01004328 [Pseudomonas aeruginosa PACS2]
gi|116051742|ref|YP_789419.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889978|ref|YP_002438842.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa LESB58]
gi|254236653|ref|ZP_04929976.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|254242435|ref|ZP_04935757.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|296387747|ref|ZP_06877222.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAb1]
gi|313109151|ref|ZP_07795122.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
gi|122260885|sp|Q02RL7|RIMM_PSEAB RecName: Full=Ribosome maturation factor rimM
gi|226734091|sp|B7UYK7|RIMM_PSEA8 RecName: Full=Ribosome maturation factor rimM
gi|115586963|gb|ABJ12978.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168584|gb|EAZ54095.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|126195813|gb|EAZ59876.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|218770201|emb|CAW25963.1| 16S rRNA processing protein [Pseudomonas aeruginosa LESB58]
gi|310881624|gb|EFQ40218.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
Length = 175
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ G+ G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELP--SLEEGEYYWHQLEGLKVIDQGGQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|209573737|sp|A1AN01|RIMM_PELPD RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRI--LKMYR 55
M+ + L+ + + THG+ G + + SY+ + L + +L S D R +
Sbjct: 1 MIDSESLIPVGKLVATHGIRGMLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +F+ F G+D+I A L ++ +R E EEDE++ DL +E +G
Sbjct: 61 RPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLP--EPEEDEYYWCDLIGLEVATVEGMA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + ++ G+ I ++ + +LIP + V+L+ ++LI P+ L+
Sbjct: 119 LGVLEEIFKAGSSDIYVVRGA-GREYLIPAIADVIHSVDLEMGRMLITPLEGLLD 172
>gi|330504638|ref|YP_004381507.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
gi|328918924|gb|AEB59755.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
Length = 178
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSN-DNRELRILKMYRKNKRFIA 62
L+++ I + HG+ GEV + S+ + N +D + L + + +++ + + K +
Sbjct: 11 LIVLGKIVSVHGVRGEVKVYSFTDPIDNVLDYQNWTLKRDGEVKKVELASGRLQGKVLVV 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ A ++ R + D LEE EF+ L+ ++ D+ G+ G V +
Sbjct: 71 KLKGLDDREIARTYAGFEICVPRSELPD--LEEGEFYWYQLQGLKVIDQAGQLLGVVDHL 128
Query: 123 YNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 129 FETGANDVMVVKACAGSLDDRERLLPYTDQCVLSIDLAAGEMRVD 173
>gi|153930923|ref|YP_001384621.1| 16S rRNA-processing protein RimM [Clostridium botulinum A str. ATCC
19397]
gi|153935028|ref|YP_001388138.1| 16S rRNA-processing protein RimM [Clostridium botulinum A str.
Hall]
gi|166226434|sp|A7FW10|RIMM_CLOB1 RecName: Full=Ribosome maturation factor rimM
gi|152926967|gb|ABS32467.1| 16S rRNA processing protein RimM [Clostridium botulinum A str. ATCC
19397]
gi|152930942|gb|ABS36441.1| 16S rRNA processing protein RimM [Clostridium botulinum A str.
Hall]
Length = 164
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+ + + + I THG+ GEV + + D+ R+ D E +IL +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVFIDGEEKKILSCKLQPNNV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+I A++ R L KR++ +L + +F DL E D G+ GQ+
Sbjct: 58 VLKIEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQIS 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V G+ + E+K E L+P K V ++++ + I P+
Sbjct: 116 DVIKTGSNDVYEVKGKSE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|119774027|ref|YP_926767.1| 16S rRNA-processing protein RimM [Shewanella amazonensis SB2B]
gi|171704647|sp|A1S3Z1|RIMM_SHEAM RecName: Full=Ribosome maturation factor rimM
gi|119766527|gb|ABL99097.1| 16S rRNA processing protein RimM [Shewanella amazonensis SB2B]
Length = 176
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ IG+T+G+ G + I +Y ++ + Y + + RE+++ + K +A
Sbjct: 8 VVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFHGKAVVAE 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ N A L + ++ + EL EDEF+ DL E + +G G+V +
Sbjct: 68 LEGVSNREQAQMLTNCEIGILAEQMP--ELPEDEFYWRDLIGCEVLNTKGYNLGKVDQIL 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFT--KFAVLEVNLQENKILID 163
G+ +L +K + F +IP+ +F VLEV L E +I++D
Sbjct: 126 ETGSNDVLMVKANAKDAFGKTERMIPYLPDQF-VLEVKLSEKQIIVD 171
>gi|224476353|ref|YP_002633959.1| 16S rRNA-processing protein RimM [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420960|emb|CAL27774.1| 16S rRNA processing protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 158
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 16 THGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATFSGIDNI 70
THG+ GEV + S + + + +D +E + + YR +K F + TF GI NI
Sbjct: 3 THGIKGEVRVKSNSDFTDVRFQPGEILTVKHDGKETELTVASYRMHKGFHMLTFEGIHNI 62
Query: 71 HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSI 130
+ + L +R D D EL+E EF+ +D+ F+ G+V ++ GA +
Sbjct: 63 NDIEHFKGDVLTQER-DHADIELDEHEFYYSDIIGCTVFEGDTPI-GRVKEIFETGANDV 120
Query: 131 LEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+K +K ++IP+ V EV+++ +I I P+ L+
Sbjct: 121 WVVKG--DKEYMIPYIADVVKEVDVEGRRIQITPLEGMLD 158
>gi|119025225|ref|YP_909070.1| 16S rRNA-processing protein rimM [Bifidobacterium adolescentis ATCC
15703]
gi|154486607|ref|ZP_02028014.1| hypothetical protein BIFADO_00424 [Bifidobacterium adolescentis
L2-32]
gi|171473022|sp|A0ZZV5|RIMM_BIFAA RecName: Full=Ribosome maturation factor rimM
gi|118764809|dbj|BAF38988.1| probable 16S rRNA-processing protein rimM [Bifidobacterium
adolescentis ATCC 15703]
gi|154084470|gb|EDN83515.1| hypothetical protein BIFADO_00424 [Bifidobacterium adolescentis
L2-32]
Length = 195
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D E +++ R K R+
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPGAVLYTKDGEEEYVVESSRTFKNRW 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GID+ ++ + LY + D +E LE DE++ DL +E +G G
Sbjct: 68 IIKFEGIDDRDASEAANGVVLYGEADD-PEEMLEADEWYPKDLISLEARLAEGNTLGLAP 126
Query: 121 GVYNFGAGSILEIKN-----------------TMEKTFLIPFTKFAVLEVNLQENKILID 163
G ++E+ +E + L+PF V +++L+ + +D
Sbjct: 127 GTVVGKVVDVIEVAQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEGGYLTLD 186
Query: 164 P 164
P
Sbjct: 187 P 187
>gi|331081975|ref|ZP_08331103.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405570|gb|EGG85100.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
Length = 168
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNR--ELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ D + VL EL I ++ +
Sbjct: 1 MEDLLQVGVITTTHGIRGEVKVFPTTDDAHRFDYLKSVLLDTGKELCELDIERVKYFKQY 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +D+I+ + LY R+ F L+E+E++ DL ME + GK++G +
Sbjct: 61 VILKFKDVDDINDIEPYKGKSLYVTRE-FA-VPLKENEYYTADLIGMEVYLEDGKHFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + + K LIP K + EV+++ K+++
Sbjct: 119 MDVMETGANDVYVVHLEAGKEVLIPAIKDCIKEVDVENGKMVV 161
>gi|116873228|ref|YP_850009.1| 16S rRNA processing protein rimM [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|123463935|sp|A0AJP8|RIMM_LISW6 RecName: Full=Ribosome maturation factor rimM
gi|116742106|emb|CAK21230.1| 16S rRNA processing protein rimM [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 169
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ IH +++ L K D LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGLTGIHQVERMKEGVLKIKETQQTD--LEENEFYFHEIIGCTVVTTDGEELGEIIEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K +K LIP+ V E+N + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGADKKEKLIPYIADVVKEINTNDKKITIEVMEGLLD 169
>gi|90961609|ref|YP_535525.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227890696|ref|ZP_04008501.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|301299256|ref|ZP_07205542.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|122449137|sp|Q1WU93|RIMM_LACS1 RecName: Full=Ribosome maturation factor rimM
gi|90820803|gb|ABD99442.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227867634|gb|EEJ75055.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|300214423|gb|ADJ78839.1| Ribosome maturation factor rimM [Lactobacillus salivarius CECT
5713]
gi|300853100|gb|EFK80698.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 168
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRI--LKMYRKNKRF-IA 62
+ I THG+ GE+ I S + P D R+ +LY DN ++ +K +R +K+F +
Sbjct: 6 VGKIVNTHGIKGELKIISKTDFPED--RFKPGNILYIRDNGKINSYEIKSHRTHKQFEMI 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G++NI+ L+ L + + E L + +++ + ++ F Y G + +
Sbjct: 64 TFKGLENINLVENLKGKILEISEE--QQENLSDGNYYHHQIIGLDVFSEDNNYIGVIKEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + +K L+P K + +++L++NK++I+
Sbjct: 122 MSPGANDVWVVKRKGSSDLLLPAIKDVIKKIDLEQNKVIIE 162
>gi|113866920|ref|YP_725409.1| 16S rRNA-processing protein RimM [Ralstonia eutropha H16]
gi|123134305|sp|Q0KD80|RIMM_RALEH RecName: Full=Ribosome maturation factor rimM
gi|113525696|emb|CAJ92041.1| RimM protein required for 16S rRNA processing [Ralstonia eutropha
H16]
Length = 222
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL-------------RI 50
LV + IG +G+ G + + +A++ L R+ L + L +I
Sbjct: 43 LVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVCVKI 102
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+ + +A SG+ + + A L+ +++ +R DF E EDEF+ DL +
Sbjct: 103 AQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPE--EDEFYWVDLIGCTVSN 160
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
QG+ G+V G+ + GA IL++ + LIPF + V+ +I++D
Sbjct: 161 EQGELLGEVSGLIDNGAHQILQVACVLPDGKAGERLIPFVDAFLRSVDTAGKRIVVD 217
>gi|115465483|ref|NP_001056341.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|51854276|gb|AAU10657.1| unknown protein [Oryza sativa Japonica Group]
gi|113579892|dbj|BAF18255.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|215704607|dbj|BAG94235.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 304
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 32/188 (17%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR------ELRILKMYR 55
LV++ + HG+ G+V + + P R++ + EL + +
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGD--RPKMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI-----KNTMEKT-------------FLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ ++T+ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDP 164
++ I P
Sbjct: 254 SREMWITP 261
>gi|284802239|ref|YP_003414104.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284995381|ref|YP_003417149.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
gi|284057801|gb|ADB68742.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284060848|gb|ADB71787.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
Length = 169
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K + LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKETQLTN--LEENEFYFHEIIGCTVVTTDGEELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 122 LTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 169
>gi|146297157|ref|YP_001180928.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|166226429|sp|A4XLF2|RIMM_CALS8 RecName: Full=Ribosome maturation factor rimM
gi|145410733|gb|ABP67737.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 169
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
K + + I T GL GEV + ++P +LN +L N +++L I + K+ I
Sbjct: 3 KYLQVGKIVNTFGLKGEVKVIPLTDSPDRFSELNYVLLEDNLSQKLTIERYRVKDNIVIM 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I +I A +L++ L +R+ + ++L ED +F D+ +E +D G+ G+V V
Sbjct: 63 KFREISSIDEALKLKNRFLVIERE--RAKKLPEDTYFICDIIGLEVYDLDGRKLGKVKDV 120
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ + ++ + +K LIP K V EVN+++ + I I L+
Sbjct: 121 LQTGSNDVYICQSYIGKKDLLIPALKDIVKEVNIEQGYMKIKVIEGLLD 169
>gi|330894532|gb|EGH27193.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. mori
str. 301020]
Length = 179
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++L ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVEKQLELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVAKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|307264847|ref|ZP_07546409.1| 16S rRNA processing protein RimM [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920105|gb|EFN50317.1| 16S rRNA processing protein RimM [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 167
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRK--NKRFIATF 64
+ + + HG+ GEV + N P DL ++ + R + Y K +K
Sbjct: 7 VGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRLHKYDIEYVKIISKGVCVKL 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID A +L+ L Q+ ELEE+E+F DL M+ + +G + G + V
Sbjct: 67 KGIDTRGDAEKLKGAFLKVDSQNAL--ELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLK 124
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK T E+ LIP K V +V++ +NK+++ + GL
Sbjct: 125 TGANDVYVIK-TEEREILIPAIKEVVKKVDV-DNKVMVVHLLEGL 167
>gi|190573385|ref|YP_001971230.1| 16S rRNA-processing protein RimM [Stenotrophomonas maltophilia
K279a]
gi|229890156|sp|B2FUB4|RIMM_STRMK RecName: Full=Ribosome maturation factor rimM
gi|190011307|emb|CAQ44920.1| putative 16S rRNA-processing protein RimM [Stenotrophomonas
maltophilia K279a]
Length = 170
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M +++ +L+ + G+ GE+ ++S+ + RY ++ S E I ++
Sbjct: 1 MKDIERRILLGRVVGAFGVRGEIKLESWTEPRSAIFRYQPWIVRSPSGVETTIEGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F G+++ + +R ++Y R + DE++ DLE ++ +G
Sbjct: 61 SGKHLVARFPGVEDRDTVEAMRGTEIYVARSALPPPK--PDEYYWVDLEGLDVKTTEGVA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFA-VLEVNLQENKILID 163
GQV +++ GA ++ ++ E+ +IPF + V V+ + N +++D
Sbjct: 119 LGQVSHLFSTGANDVVVVRGDRER--MIPFVQPDFVKSVDFEANLVVVD 165
>gi|218782475|ref|YP_002433793.1| 16S rRNA processing protein RimM [Desulfatibacillum alkenivorans
AK-01]
gi|218763859|gb|ACL06325.1| 16S rRNA processing protein RimM [Desulfatibacillum alkenivorans
AK-01]
Length = 169
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYS-NDNRELRILKMYRKNK-RFI 61
V + + HG+ G V + S+A+NP D+ + +L +N + IL+ R K + +
Sbjct: 7 VEVGQVAGVHGIRGAVLLRSFADNP-DIFAKGGKLLLKGPGENIQEYILESSRPYKGKLL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ + A L+ + R ELE DE++ DL ME G G +
Sbjct: 66 AELQGVSDRSGAEALKGRMILVHRDALP--ELEPDEYYWFDLIGMEVAAPDGSRLGVLDA 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + IK+ EK L P + VL ++L+ +++D
Sbjct: 124 IIETGANDVYVIKDG-EKEILAPALPWVVLSIDLEAGVMIVD 164
>gi|313637368|gb|EFS02847.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL S4-171]
Length = 172
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS---YANNPIDL-NRYVLYSNDNR--ELRILKMYRKN 57
++K+ + I THGL GE+ + + +A+ + N L+ +++ E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVXLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIEVMEGLLD 172
>gi|293400510|ref|ZP_06644655.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305536|gb|EFE46780.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 167
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRK--NKRFIAT 63
+ + THGL GEV + + +D+ +++ + L + Y K + I
Sbjct: 6 IGILVNTHGLRGEVKVKP-TTDFVDIRFAKGKHIHIQYQQQLLDVCVEYAKWAKQLLIVK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G D+I+ + L + LEEDE + +L++ + D +G+Y G V V
Sbjct: 65 FAGYDDINQVEAWKGSLLSISEEQL--HALEEDEAYFFELQDCQVLDEEGRYLGDVIEVL 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A +IL ++N E+ FL+P+ K V + +E I+I
Sbjct: 123 ETNANAILRVRNE-EREFLVPYVKAFVQDFKREEKCIVI 160
>gi|226365998|ref|YP_002783781.1| 16S rRNA-processing protein RimM [Rhodococcus opacus B4]
gi|254797760|sp|C1B2R9|RIMM_RHOOB RecName: Full=Ribosome maturation factor rimM
gi|226244488|dbj|BAH54836.1| putative 16S rRNA processing protein RimM [Rhodococcus opacus B4]
Length = 183
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE-----LRILKMYRKNK 58
+++ + +HG+ GE+ ++ + P D R+ VL + RE R+ +
Sbjct: 3 LVVGRVAKSHGIKGEIVVEVRTDEPED--RFAVGAVLRGHKPREQTVNTYRVEAAREHSG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + G+ + +A LR + + + DEF++ +LE + G G
Sbjct: 61 RLLLRLEGVPDRTAADALRGTLFVIDSAELVPSD-DPDEFYDHELEGLSVRLADGTELGA 119
Query: 119 VCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILIDP 164
V V + AG +L I+ E++ L+PF V V++ + ++IDP
Sbjct: 120 VIEVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDP 167
>gi|323484789|ref|ZP_08090146.1| hypothetical protein HMPREF9474_01897 [Clostridium symbiosum
WAL-14163]
gi|323691862|ref|ZP_08106116.1| 16S rRNA processing protein RimM [Clostridium symbiosum WAL-14673]
gi|323401895|gb|EGA94236.1| hypothetical protein HMPREF9474_01897 [Clostridium symbiosum
WAL-14163]
gi|323504069|gb|EGB19877.1| 16S rRNA processing protein RimM [Clostridium symbiosum WAL-14673]
Length = 170
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKN 57
+++ + + I +THG+ GEV + + D+NRY L + R L L+ + +
Sbjct: 1 MEQFLRVGVISSTHGIKGEVKVFPTTD---DVNRYKDLKEVFLDTGKGRILMELEQVKFH 57
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K I F G DNI+ + L R+ L DE F DL ++ +GK +
Sbjct: 58 KNMVIVKFKGYDNINDIEMYKGKDLLISRE--HAVSLAPDENFIIDLIGLKVVTDEGKDF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V + GA + I K +L P K +L+VNL+E K+ +
Sbjct: 116 GTVKDILQTGANDVYVIDGNDGKEYLFPSIKECILDVNLEEGKVTV 161
>gi|293189834|ref|ZP_06608548.1| 16S rRNA processing protein RimM [Actinomyces odontolyticus F0309]
gi|292821249|gb|EFF80194.1| 16S rRNA processing protein RimM [Actinomyces odontolyticus F0309]
Length = 170
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
A +G HGL GEV +D +++P + + + D R L + + R +A+F
Sbjct: 6 AIVGPAHGLRGEVIVDVRSDDPEVMAPGSRLDIAGDQRSLTVRTVRVHKDRVLASFEECV 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A LR +L D EED ++ +L+ ++ G G V G+ G
Sbjct: 66 TREDAEALRGARL------LVDAHPEEDAWYPHELKGLQARTPSGDVLGTVSGLTP-GVA 118
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
L + T T ++PF V V+++ ++ID
Sbjct: 119 QDLLLVATDRGTVMVPFVTALVPTVDVEGGFVVID 153
>gi|268319237|ref|YP_003292893.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
gi|262397612|emb|CAX66626.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
Length = 173
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I + HGL GEV +++ + P + +R + +N E I++ R++K+F + F
Sbjct: 7 VGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
ID+I A ++ +LY D +EL E ++ D+ +D + G+ G + +
Sbjct: 67 EKIDDIDQAEKICSKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLGVLENIE 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA I EIK+ K+F IP + V +V+L +I +
Sbjct: 125 TPGANDIWEIKSEKGKSFWIPNIESVVKKVDLANKRIEV 163
>gi|320527193|ref|ZP_08028379.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
gi|320132384|gb|EFW24928.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
Length = 169
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRI-LKMYRKNKRF- 60
+ + I THG+ GEV I+SY++ D RY V D + L + + YRK+K F
Sbjct: 4 ICIGKIINTHGIKGEVKIESYSD--FDEERYTKSKQVYICVDEKYLPVTVASYRKHKGFP 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +F + NI+ + + ++Y D K +L++ E++ DL + D +G G++
Sbjct: 62 LVSFVDLQNINFVEQYKGCEIYIDEADRK--QLKKGEYYRKDLVGLTVVDEEGITVGKII 119
Query: 121 GV-YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + L ++ K LIP+ V V+L++ + I + L
Sbjct: 120 SVEETLGAQNNLRLQLEDAKEVLIPYIPMIVKNVDLEKKVMTIHRMGGLL 169
>gi|238063307|ref|ZP_04608016.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
gi|237885118|gb|EEP73946.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
Length = 185
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 25/179 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR----------------- 46
+++ IG HG+ GEV ++ + P R+ VL +
Sbjct: 3 LIVGRIGKPHGIRGEVTVEVRTDEP--EARFAPGSVLATEPGAVPPANPASGPGVPFRVP 60
Query: 47 -ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEE 105
EL + R + F GI A LR L D E + +EF + L
Sbjct: 61 AELTVESARWHQGRLLVVFDGILERDVAEALRGTLLGVDSADVAPPE-DPEEFHDHQLVG 119
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G++ G+V + + A +L ++ +T LIPF K V EV+L +I++DP
Sbjct: 120 LAVVTPAGEHLGEVVKIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRIVVDP 178
>gi|167586558|ref|ZP_02378946.1| 16S rRNA-processing protein [Burkholderia ubonensis Bu]
Length = 225
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKN 57
D V + + +GL G V + ++A+ ++ R+ L R +RI +
Sbjct: 49 DDAVEVGAVVDAYGLKGWVKVMTHADAGRGGDALLNACRWWLEKGAERHAVRITQAKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR ++ +R+DF L+ DEF+ DL ++ + Q G
Sbjct: 109 DTVVAHLAGLGDRDAALALRGFRVSVRREDFP--ALDADEFYWVDLIGLDVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V G+ + GA SI+ I+ LIPF V V+ +I++D
Sbjct: 167 KVIGMIDNGAHSIMRIEYPATGKDGQPAPAERLIPFVGVYVKTVDQAARRIVVD 220
>gi|186682347|ref|YP_001865543.1| 16S rRNA-processing protein RimM [Nostoc punctiforme PCC 73102]
gi|209573584|sp|B2J3X9|RIMM_NOSP7 RecName: Full=Ribosome maturation factor rimM
gi|186464799|gb|ACC80600.1| 16S rRNA processing protein RimM [Nostoc punctiforme PCC 73102]
Length = 235
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLY--SNDNRELRILK-MYRK 56
LD + + I + GL+GE+ + ++ P + R++L+ + + +++L Y
Sbjct: 53 LDNWLEIGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLHLDGTEPQPIQLLTGRYIS 112
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGK 114
NK ++ +G++N A LR KL D +L EDE+ DL +E F G+
Sbjct: 113 NKNLYVIKLAGVENCDQAEALRGCKLMVPASD--RPQLAEDEYHVLDLIGLEVFMQASGE 170
Query: 115 YWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V + G +LE+K + +KT LIPF + V+L+ N+I I P
Sbjct: 171 LVGTVVDIIPAG-NDLLEVKLHPSFTTDKKQKTVLIPFVEAIAPVVDLKSNRIEITP 226
>gi|197119791|ref|YP_002140218.1| 16S rRNA processing protein RimM [Geobacter bemidjiensis Bem]
gi|197089151|gb|ACH40422.1| 16S rRNA processing protein RimM [Geobacter bemidjiensis Bem]
Length = 172
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELR---ILKMYRKNKRF 60
K +L+ I THG+ G++ + +A + +++ V + L ++ KR
Sbjct: 5 KKLLIGKIQGTHGIKGQLRVIPFAGDASSISQLNEVFVKSPTAALEPFAVVSAKAHGKRV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T DNI+ L ++YA R EL +DEF+ +DL ++ G+ G++
Sbjct: 65 ILTLKPFDNINQVLHLVGREIYADRVSLP--ELPDDEFYWSDLLGLQVATSDGEELGELV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + +K + LIP + VL +NL E ++ +
Sbjct: 123 DIIETGSNDVYVVKKGALEV-LIPALEDVVLSINLAEGRMTV 163
>gi|299536771|ref|ZP_07050079.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
gi|298727783|gb|EFI68350.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
Length = 171
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRE--LRILKMYRKNKRFIA- 62
+ I THG+ GEV + S + + N+ + D+++ ++ R++K FI
Sbjct: 6 VGRIVNTHGIRGEVRVLSTTDFEEERFTVGNKLAAFKKDDKKPTWVTIESVRRHKNFILL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G++NI+ L++ L + D+ LEE+EFF ++ +G+ G V +
Sbjct: 66 TFEGMNNINLVEPLKEGMLKVTKDQMSDDLLEENEFFFHEIIGCTVISEEGETIGVVADI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + +K T +K IP+ + V ++++ + KI+I
Sbjct: 126 LQTGANDVWVVKGT-KKEHYIPYIEDIVKDIDVMDKKIVI 164
>gi|94309694|ref|YP_582904.1| 16S rRNA-processing protein RimM [Cupriavidus metallidurans CH34]
gi|209573590|sp|Q1LQE1|RIMM_RALME RecName: Full=Ribosome maturation factor rimM
gi|93353546|gb|ABF07635.1| 16S rRNA processing protein [Cupriavidus metallidurans CH34]
Length = 220
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLY-------------SNDNREL 48
D LV + +G +G+ G + + +A++ L R+ L S + +
Sbjct: 39 DDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRAPPAGVVSAPAQSAEAVSI 98
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+I + + +A +G+ + A L+ +++ +R DF EE EF+ DL
Sbjct: 99 KISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFP--AAEEGEFYWVDLIGCAV 156
Query: 109 FDRQGKYWGQVCGVYNFGAGSIL----EIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL E+ + LIPF + V+ +I++D
Sbjct: 157 VNEQGEALGEVTGLIDNGAHQILQVAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVD 215
>gi|322806711|emb|CBZ04280.1| 16s rRNAprocessing protein RimM [Clostridium botulinum H04402 065]
Length = 164
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+ + + + I THG+ GEV + + D+ R+ D E +IL +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVFIDGEERKILSCKLQPNNV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+I A++ R L KR++ +L + +F DL E D G+ GQ+
Sbjct: 58 VLKIEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQIS 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V G + E+K E L+P K V ++++ + I P+
Sbjct: 116 DVIKTGNNDVYEVKGKSE--VLVPAIKDIVTNIDIESKTVTIKPL 158
>gi|239617837|ref|YP_002941159.1| 16S rRNA processing protein RimM [Kosmotoga olearia TBF 19.5.1]
gi|259585646|sp|C5CEB5|RIMM_KOSOT RecName: Full=Ribosome maturation factor rimM
gi|239506668|gb|ACR80155.1| 16S rRNA processing protein RimM [Kosmotoga olearia TBF 19.5.1]
Length = 200
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNREL---RILKMYRKN 57
+D ++ + + HGL GEV + S N L + +LY + I + R
Sbjct: 9 IDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAG 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +I F G ++ +A +R +YA L+E E++ L + E +D +G+Y G
Sbjct: 69 KGYIVHFKGFKSVEAAERIRGFYVYAPLNVLP--PLKEGEYYFYQLLDCEVYDPEGEYIG 126
Query: 118 QVCGVYNFGAGSIL----EIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+V + GA ++ E+ + + LIP K ++E ++ KI+
Sbjct: 127 KVTDIIETGANDVIVVTKELPDFTVEEELIPVIKDYIVEFRFKDKKIV 174
>gi|114330464|ref|YP_746686.1| 16S rRNA processing protein RimM [Nitrosomonas eutropha C91]
gi|122314522|sp|Q0AIV0|RIMM_NITEC RecName: Full=Ribosome maturation factor rimM
gi|114307478|gb|ABI58721.1| 16S rRNA processing protein RimM [Nitrosomonas eutropha C91]
Length = 168
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRIL---KMYRKNKRFI 61
+V++ + HG+ G++ + + + L Y ++ SND + +I+ + I
Sbjct: 1 MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE---FFNTDLEEMETFDRQGKYWGQ 118
T + +AS L+ + R +L ED ++ +DL + + QG++ G
Sbjct: 61 ITLEEYSDRTNASGLKGWLIAVPRSQLP--QLSEDGKEGYYWSDLIGISVVNTQGEFIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G++ GA +L I+ K LIPF V +V+++ +I++D
Sbjct: 119 VAGLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQIMVD 163
>gi|226305933|ref|YP_002765893.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis PR4]
gi|259585650|sp|C0ZXR9|RIMM_RHOE4 RecName: Full=Ribosome maturation factor rimM
gi|226185050|dbj|BAH33154.1| probable 16S rRNA processing protein RimM [Rhodococcus erythropolis
PR4]
Length = 190
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYR------KN 57
+++ + +HG+ GE+ ++ + P D R+ VL RE LK Y +
Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPED--RFAVGSVLRGRKPRE-STLKSYTVEAARDHS 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
R + G+ + A LR + + + + DEF++ +LE ++ G G
Sbjct: 60 GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSD-DPDEFYDHELEGLKVVLTDGTEVG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILIDP 164
V V + AG +L I+ T E + LIPF V V++ + ++I+P
Sbjct: 119 SVIEVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEP 167
>gi|148265781|ref|YP_001232487.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
gi|209573558|sp|A5G7Z6|RIMM_GEOUR RecName: Full=Ribosome maturation factor rimM
gi|146399281|gb|ABQ27914.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
Length = 173
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILKMYRK---NKRFIA 62
VL+ + THG+ G++ I ++ + L R ++ E+ I + K+ I
Sbjct: 8 VLIGKVSATHGVRGQLRITPFSGDVDSLLTLRSIMVKKPGGEMEIFAVAASKAHGKKVII 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T DNI+ L +LYA R+ EL EDE++ DL ++ +G+ G++ +
Sbjct: 68 TLKAFDNINQVLHLVGRELYALREQLP--ELPEDEYYWCDLLGLQVVTEEGESLGELVDI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVN 154
G+ + ++ + + LIP VL+V+
Sbjct: 126 IVTGSNDVYVVQGS-GREILIPALADVVLDVD 156
>gi|268316591|ref|YP_003290310.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
gi|262334125|gb|ACY47922.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
Length = 179
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN-RELRILKM-YR 55
V D+L+LM + HG+ G + ++P YV S + R +R+ ++ Y+
Sbjct: 4 VDPDELLLMGYVARAHGVRGAFKVVPETDDPTRFETLETIYVGRSPETARPVRLERVQYQ 63
Query: 56 KNKRFIATFSGIDNI---HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+R + + + +A LR L++YA+R D L E EFF DL +
Sbjct: 64 PTRRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLPP--LAEGEFFLHDLIGLRVETEA 121
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ G V V A I + ++P + V E++L+ +++I PI L+
Sbjct: 122 GETVGTVIEVLEMPAHLIYVVGRPGRPHAMVPDVEVFVRELDLEGRRLVIRPIEGLLD 179
>gi|313632802|gb|EFR99758.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL N1-067]
Length = 172
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS---YANNPIDL-NRYVLYSNDNR--ELRILKMYRKN 57
++K+ + I THGL GE+ + + +A+ + N L+ +++ E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIEVMEGLLD 172
>gi|153938104|ref|YP_001391744.1| 16S rRNA-processing protein RimM [Clostridium botulinum F str.
Langeland]
gi|170756645|ref|YP_001781989.1| 16S rRNA-processing protein RimM [Clostridium botulinum B1 str.
Okra]
gi|166226435|sp|A7GG34|RIMM_CLOBL RecName: Full=Ribosome maturation factor rimM
gi|152934000|gb|ABS39498.1| 16S rRNA processing protein RimM [Clostridium botulinum F str.
Langeland]
gi|169121857|gb|ACA45693.1| 16S rRNA processing protein RimM [Clostridium botulinum B1 str.
Okra]
gi|295319769|gb|ADG00147.1| 16S rRNA processing protein RimM [Clostridium botulinum F str.
230613]
Length = 164
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNK 58
+ + + + I THG+ GEV + + D+ R+ V + R++ K+ N
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVFIDGEGRKILSCKLQPNN- 56
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ GID+I A++ R L KR++ +L + +F DL E D G+ GQ
Sbjct: 57 -VVLKIEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDENGREIGQ 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ V G+ + E+K E L+P K V ++++ + I P+
Sbjct: 114 ISDVIKTGSNDVYEVKGKSE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|300783879|ref|YP_003764170.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
gi|299793393|gb|ADJ43768.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
Length = 170
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYV---LYSNDNRELRILKMYRKNKRFI 61
V++ I HG+ GE+ +D ++P + V L REL I + R +
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPEQRFKIGAAVTTKLRDGSKRELTIAAAREHSGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + A LR L A E + DEF++ +L + G G+V
Sbjct: 63 VRFEEVLTRDVAETLRGALLLADTATLPPTE-DPDEFYDHELAGLRAELTDGTVVGKVVE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + AG +LE+ + + L+PF V V++ ++++DP
Sbjct: 122 IVHSPAGELLEL-DVEGREVLVPFVHAIVPTVDIAGGRVVLDP 163
>gi|118469073|ref|YP_886777.1| 16S rRNA-processing protein RimM [Mycobacterium smegmatis str. MC2
155]
gi|166226453|sp|A0QV39|RIMM_MYCS2 RecName: Full=Ribosome maturation factor rimM
gi|118170360|gb|ABK71256.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis str. MC2
155]
Length = 173
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 16 THGLNGEVYIDSYANNP------IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
HG++GEV ++ ++P + R S RE I + R + +G+ +
Sbjct: 11 AHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGRLLVRLAGVAD 70
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+ A ELR + + + DEF++ +LE M G+V V + G
Sbjct: 71 RNGADELRGTVFLVDTAELPAID-DPDEFYDHELEGMRVVTVDDAPVGKVAEVLHTAGGE 129
Query: 130 ILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
IL +K + + L+PF V V+ Q I+IDP
Sbjct: 130 ILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDP 165
>gi|170759832|ref|YP_001787758.1| 16S rRNA-processing protein RimM [Clostridium botulinum A3 str.
Loch Maree]
gi|169406821|gb|ACA55232.1| 16S rRNA processing protein RimM [Clostridium botulinum A3 str.
Loch Maree]
Length = 164
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRFIATF 64
+ I THG+ GEV + + D+ R+ VL + R++ K+ N +
Sbjct: 7 VGEIINTHGIKGEVKVYPLTD---DMKRFKKLKEVLIDGEKRKILSCKLQPNN--VVLKI 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID+I A++ R L KR++ +L + +F DL D GK GQ+ V
Sbjct: 62 EGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIGCRVIDEDGKEIGQISDVIK 119
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+ + E+K E L+P K V ++++ + I P+
Sbjct: 120 TGSNDVYEVKGKSE--VLVPAIKDIVTNIDIENKTVTIKPL 158
>gi|325524025|gb|EGD02210.1| 16S rRNA-processing protein RimM [Burkholderia sp. TJI49]
Length = 225
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G + + ++A+ + R+ L R RI++
Sbjct: 49 DDAVEVGAVVDAYGLKGWLKVAAHADAGRGGDALLKARRWWLEKGAQRFSARIMQSKTHG 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q G
Sbjct: 109 DTVVAQTAGVSDRDAALALRGFRVFVRREDFP--ALAADEFYWVDLIGLEVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V G+ + A SI+ ++ + LIPF V V+ +I++D
Sbjct: 167 KVAGMIDNSAHSIMRVEYPAVGKDGRPVTAERLIPFVGVYVKTVDQAARRIVVD 220
>gi|329120757|ref|ZP_08249419.1| 16S rRNA processing protein RimM [Neisseria bacilliformis ATCC
BAA-1200]
gi|327460554|gb|EGF06890.1| 16S rRNA processing protein RimM [Neisseria bacilliformis ATCC
BAA-1200]
Length = 169
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNG--EVYIDS-YANNPIDLNRYVLYSNDNRELRILKMYRKN 57
M + + V M I G+ G +V +D+ YA++ +D + L N +L+ +
Sbjct: 1 MAQETQWVAMGYIKGAFGIKGWVKVAVDTEYADSLLDYPEWRLSRNGKAVSVVLEAGKTA 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F GI + +A LR + R DF EE EE E++ DL M G+
Sbjct: 61 ADGLHVKFQGIGDRDAAQLLRGYTVEINRADF--EETEEGEYYWADLVGMTVITPAGETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G V G+ GA IL +++ +T LIPF V EVN + I D A
Sbjct: 119 GTVSGLMETGAHDILVVRHEGGET-LIPFVAQFVGEVNRETRTITADWAA 167
>gi|323141929|ref|ZP_08076789.1| 16S rRNA processing protein RimM [Phascolarctobacterium sp. YIT
12067]
gi|322413596|gb|EFY04455.1| 16S rRNA processing protein RimM [Phascolarctobacterium sp. YIT
12067]
Length = 167
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI-ATFSG 66
+++ I HG+ G++ I + P + +K R +KR + T +
Sbjct: 5 IVIGKIVAPHGVRGDIRILPLTDKPEQFLDLDYLLLPDGRKLTVKAARFHKRMVLVTTAE 64
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
I +++ + LR +++ +D ELEE F+ DL + +D QG+ G + G
Sbjct: 65 IKSMNESELLRGMEVSINAEDLP--ELEEGRFYVADLIGLPVYDEQGEQIGTFKDALSTG 122
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + I +K +L+P K V E+NL E +I+++
Sbjct: 123 SNDVYVIAVPGQKDYLLPALKKYVKEINLAEKRIVVE 159
>gi|42519386|ref|NP_965316.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227890251|ref|ZP_04008056.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|59798804|sp|Q74IQ5|RIMM_LACJO RecName: Full=Ribosome maturation factor rimM
gi|41583674|gb|AAS09282.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227849065|gb|EEJ59151.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|329667091|gb|AEB93039.1| 16S rRNA processing protein [Lactobacillus johnsonii DPC 6026]
Length = 173
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I + HGL GEV +++ + P + +R + +N E I++ R++K+F + F
Sbjct: 7 VGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQFYLVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
ID+I A ++ +LY D +EL E ++ D+ +D + G+ G + +
Sbjct: 67 EKIDDIDQAEKICSKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLGVLENIE 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA I EIK K+F IP + V +V+L +I +
Sbjct: 125 TPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKRIEV 163
>gi|224419145|ref|ZP_03657151.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|253828080|ref|ZP_04870965.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|313142651|ref|ZP_07804844.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|253511486|gb|EES90145.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|313131682|gb|EFR49299.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
Length = 183
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
V +A IG G+ GEV + + P L Y N L I ++N R F+ I
Sbjct: 12 VSVAKIGRAVGVKGEVLLHLLTDFPESLKIGNTYFTQNGTLTIQNYNKENSR--VKFTQI 69
Query: 68 DNIHSASELRDLKLYAKRQDFKDEE--LEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
D+ A ++ +L LY QDF E L++DEFF D+ + + + K G+V +
Sbjct: 70 DSPEKAKQITNLILYT-TQDFTKEHCILQKDEFFWFDIIGSQIME-EDKILGEVSEIERL 127
Query: 126 GAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
G L IK N + K+FLIP+ +LEV N +I
Sbjct: 128 GEKDFLVIKTAKELCKNGLPKSFLIPYESRYILEVETNLNPKII 171
>gi|254519210|ref|ZP_05131266.1| ribosome maturation factor rimM [Clostridium sp. 7_2_43FAA]
gi|226912959|gb|EEH98160.1| ribosome maturation factor rimM [Clostridium sp. 7_2_43FAA]
Length = 165
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
++ + I THGL GEV + + ++P N D E +I + R I G
Sbjct: 4 ILRVGKIVNTHGLKGEVKVIALTDDPKRYNDLDFVLIDGVERKIQGCKFQKDRVIVKIEG 63
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A + ++ + R+ LEED ++ D+ +D +GK G+V V
Sbjct: 64 IDSIEEAEKYKNKYMEIPRE--YAVPLEEDTYYIADIIGCNVYDTEGKSLGEVYDVIQTK 121
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ I+ K LIP V +++++ KI I P+
Sbjct: 122 NNDVYWIRKP--KELLIPVLLDIVTDIDVENRKITIKPVG 159
>gi|260588676|ref|ZP_05854589.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
gi|260541151|gb|EEX21720.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
Length = 168
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNR--ELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ D + VL EL I ++ +
Sbjct: 1 MEDLLQVGVITTTHGIRGEVKVFPTTDDAHRFDYLKSVLLDTGKELCELDIERVKYFKQY 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +D+I+ + LY R+ F L+E+E++ DL ME + GK++G +
Sbjct: 61 VILKFKDVDDINDIEPYKGKSLYVTRE-FA-VPLKENEYYIADLIGMEVYLEDGKHFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + + K LIP K + EV+++ K+++
Sbjct: 119 MDVMETGANDVYVVHLEAGKEVLIPAIKDCIKEVDVENGKMVV 161
>gi|317052720|ref|YP_004113836.1| 16S rRNA processing protein RimM [Desulfurispirillum indicum S5]
gi|316947804|gb|ADU67280.1| 16S rRNA processing protein RimM [Desulfurispirillum indicum S5]
Length = 166
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNR----ELRILKMYRKNKRFI 61
+A I T GL GE+ + S N P R+ L+ R LRI ++R +
Sbjct: 4 IARITKTRGLRGELQLFSLFNEP---GRFEGLKHLHIGGVRFAVSRLRI----ADSQRLV 56
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELE--EDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D I A EL + +E+ EDE+F+ +L+++ + G+ G +
Sbjct: 57 VSLKGVDTIEQAEEL-----VGQDACLPVDEIPRYEDEYFDFELQKLRVINDDGEELGSL 111
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
+ + GA + EI + K ++IP + E+NL+E +L+ PI ++ +
Sbjct: 112 TQIIHTGAKDVYEILSPGGKRWMIPANHEFIPEINLEEGYMLVRPIPGMMDEDAL 166
>gi|71733889|ref|YP_273613.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487157|ref|ZP_05641198.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289625895|ref|ZP_06458849.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289646207|ref|ZP_06477550.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298488275|ref|ZP_07006308.1| 16S rRNA processing protein RimM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|109893032|sp|Q48LV9|RIMM_PSE14 RecName: Full=Ribosome maturation factor rimM
gi|71554442|gb|AAZ33653.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157214|gb|EFH98301.1| 16S rRNA processing protein RimM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323177|gb|EFW79266.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329552|gb|EFW85541.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330867525|gb|EGH02234.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330874829|gb|EGH08978.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330985049|gb|EGH83152.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009222|gb|EGH89278.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 179
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVAKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|312962852|ref|ZP_07777339.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
gi|311282879|gb|EFQ61473.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
Length = 178
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L +Y ++ +++ ++ +K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKTWTLKREGSVKQVELVSGRGSDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ LE ++ D+ G+ G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLEGLKVIDQLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|82701704|ref|YP_411270.1| 16S rRNA processing protein RimM [Nitrosospira multiformis ATCC
25196]
gi|109893025|sp|Q2YBJ3|RIMM_NITMU RecName: Full=Ribosome maturation factor rimM
gi|82409769|gb|ABB73878.1| 16S rRNA processing protein RimM [Nitrosospira multiformis ATCC
25196]
Length = 168
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Query: 7 LVLMATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNR--ELRILKMYRKNKRFI 61
+V+M + + + G + + Y + +D + L S + + ++++ +
Sbjct: 1 MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A+ + +A+ L+ LK+ R+ E E+ ++ +DL + + QG+ G+V
Sbjct: 61 ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ GA +L+++N E LIPF +++V+L +I +D
Sbjct: 121 GLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRITVD 163
>gi|331091005|ref|ZP_08339847.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405227|gb|EGG84763.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
2_1_46FAA]
Length = 168
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM--YRKN 57
+++L+ + I +THG+ GEV + + D+NR+ + + RE +L++ +
Sbjct: 1 MEQLLQVGIISSTHGVRGEVKVFPTTD---DINRFKKLKQVILDTGREKMVLEVQGVKFF 57
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K+F I F GIDNI+ + + L+ R+ +L+++E+F D+ M + + +++
Sbjct: 58 KQFAILKFKGIDNINDIEKYKGKSLFVDRE--HAVKLKKNEYFIADMIGMNVYTEEDEFF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G + V GA + I + L+P + +L V+++++K++I
Sbjct: 116 GVLKDVIETGANDVYVISSEKHGEVLVPAIRQCILNVDIEKSKMVI 161
>gi|152980656|ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille]
gi|209573563|sp|A6SVI5|RIMM_JANMA RecName: Full=Ribosome maturation factor rimM
gi|151280733|gb|ABR89143.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille]
Length = 179
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 15/170 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR---FIAT 63
LVL+ I +GLNG V + Y+ + L + D E ++M + +A
Sbjct: 7 LVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKPEFHDVEMMQSKIHTGDVVAK 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ +A L+ + R F L ++EF+ DL +E + QG++ GQV +
Sbjct: 67 LMGVAGRDAAEALKGATVQIPRSHFP--ALSDNEFYWVDLIGLEVENLQGEHLGQVSDMM 124
Query: 124 NFGAGSILEI----------KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA IL + + LIPF + V+ V+ KI +D
Sbjct: 125 DNGAHPILRVAVPQAAETTDPKAAPQELLIPFVEQFVITVDRTAKKITVD 174
>gi|17230304|ref|NP_486852.1| 16S rRNA-processing protein RimM [Nostoc sp. PCC 7120]
gi|21362862|sp|Q8YTB1|RIMM_ANASP RecName: Full=Probable 16S rRNA-processing protein rimM
gi|17131905|dbj|BAB74511.1| alr2812 [Nostoc sp. PCC 7120]
Length = 246
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKM---YRKN 57
D+ + + I + GL+GEV + ++ P + R++L I + Y +N
Sbjct: 63 DEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYLEN 122
Query: 58 KR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKY 115
K ++ +G++N + ELR L+ D EL EDE+ DL ME F G
Sbjct: 123 KNLYVLQLAGVENRSQSEELRGCMLFVPASDRP--ELGEDEYHVVDLIGMEVFLQASGDL 180
Query: 116 WGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V V G +LE+ + KT LIPF K V+LQ +I I P
Sbjct: 181 VGAVVDVIPAG-NDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITP 235
>gi|154249335|ref|YP_001410160.1| 16S rRNA processing protein RimM [Fervidobacterium nodosum Rt17-B1]
gi|171769331|sp|A7HKS0|RIMM_FERNB RecName: Full=Ribosome maturation factor rimM
gi|154153271|gb|ABS60503.1| 16S rRNA processing protein RimM [Fervidobacterium nodosum Rt17-B1]
Length = 177
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKR---FIATF 64
+ THGLNG++ + ++N P + V Y+ ++ I+K + K FI
Sbjct: 16 GILSNTHGLNGDLKLYLFSNMPELVEKITEAVAYNESQKKFVIVKFSKVRKASDYFIVHL 75
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+GID I A +L+ +Y + F ++ E++ ++ E +D G++ G V +
Sbjct: 76 TGIDTISEAEKLKGFIIYLDKSFFPKS--KDGEYYFFEILNAEVYDNAGEFIGIVEDIIE 133
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G ++ +K E+ LIP + +L+++ + KI+++
Sbjct: 134 TGNNDVIVVKKEKEEV-LIPVIERYILKIDKEAKKIIVN 171
>gi|238852594|ref|ZP_04643004.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
gi|238834740|gb|EEQ26967.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
Length = 173
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I + HGL GEV +++ + P + +R + ++D + I+ R++K+F + F
Sbjct: 7 VGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQFYLVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
ID+I A ++ +LY D +EL E ++ D+ +D + G+ G + +
Sbjct: 67 EEIDDIDQAEKVCGKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLGVLANIE 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA I EIK K+F IP + V +V+L +I +
Sbjct: 125 TPGANDIWEIKPERGKSFWIPNIESVVNKVDLANKRIEV 163
>gi|229525222|ref|ZP_04414627.1| 16S rRNA processing protein RimM [Vibrio cholerae bv. albensis
VL426]
gi|229338803|gb|EEO03820.1| 16S rRNA processing protein RimM [Vibrio cholerae bv. albensis
VL426]
Length = 184
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A+ L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDANLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
>gi|154147973|ref|YP_001406147.1| 16S rRNA processing protein RimM [Campylobacter hominis ATCC
BAA-381]
gi|166226430|sp|A7I0V6|RIMM_CAMHC RecName: Full=Ribosome maturation factor rimM
gi|153803982|gb|ABS50989.1| 16S rRNA processing protein RimM [Campylobacter hominis ATCC
BAA-381]
Length = 176
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIAT 63
D ++ +A +G T GL G + + + ++ P + Y D L IL + N F+A
Sbjct: 4 DDMLEVALLGKTIGLKGAIKLHNRSDFPSQFKKGAKFYLTDGEILEILSFNKTN--FVAV 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +NI A++L + LY ++ K +L +DEFF ++ +E F+ + K G+V +
Sbjct: 62 FKNYENIECAAKLTNKILYQSKEITKKTCKLGKDEFFYFEILGLEVFENEEK-LGKVADI 120
Query: 123 YNFG------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+ G A IK K F +P+T + +++++E KI
Sbjct: 121 FEAGNFVFEIATDEKLIKKGFPKIFYLPYTDHFIDKISIEEGKIF 165
>gi|302554428|ref|ZP_07306770.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
gi|302472046|gb|EFL35139.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
Length = 180
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLTTDPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEE--DEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ + A LR+ L A+ +EL E DE+++ L +++ G G++
Sbjct: 63 FEGVSDRTGAEALRNTLLIAE---IDPDELPEGEDEYYDHQLIDLDVVTADGTEVGRITE 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ LIPF + V E++L+E K +I P
Sbjct: 120 ISHLPTQDLFIVERPDGSEVLIPFVEEIVAEIDLEEQKAVITP 162
>gi|189184234|ref|YP_001938019.1| 16S rRNA-processing protein RimM [Orientia tsutsugamushi str.
Ikeda]
gi|238692020|sp|B3CTT8|RIMM_ORITI RecName: Full=Ribosome maturation factor rimM
gi|189181005|dbj|BAG40785.1| 16S rRNA processing protein RimM [Orientia tsutsugamushi str.
Ikeda]
Length = 164
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
KL+L+ I + +G+ G+V I S+ + ++ Y L ++I +K+ I
Sbjct: 5 SKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKIICNI 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I +A +L KLY + + +L + E++ +L ++ + +G+ G++ + N
Sbjct: 65 DQIVTRTAAEQLTRTKLYIYKHEL--PQLPDSEYYVANLNGIKVKNLEGEIIGKINNICN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFT 146
+ AG I+E+ K + PFT
Sbjct: 123 YNAGDIIEVVYNDGKKIMYPFT 144
>gi|220928162|ref|YP_002505071.1| 16S rRNA-processing protein RimM [Clostridium cellulolyticum H10]
gi|254797746|sp|B8I7T4|RIMM_CLOCE RecName: Full=Ribosome maturation factor rimM
gi|219998490|gb|ACL75091.1| 16S rRNA processing protein RimM [Clostridium cellulolyticum H10]
Length = 169
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKN-----KRFI 61
+++ + THG+ GE+ S ++P + +Y + N L+ Y N K+FI
Sbjct: 5 LIVGQLINTHGVKGELKATSQTDDPQRFKKLKWVYIDKNGS---LEKYDINGVKFFKQFI 61
Query: 62 AT-FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F G+D+I A +L+ Y K +L E+ FF +D+ ++ +D + G++
Sbjct: 62 IIKFQGVDSIEEAEKLKG--FYIKVDRANAVKLPENSFFISDIIGLKVYDENNQLLGELK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V G+ + ++++ K LIP K V EV+++E KI
Sbjct: 120 DVIQTGSNDVYVVRDSDSKEILIPALKSVVKEVSIEEGKI 159
>gi|241889523|ref|ZP_04776822.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
gi|241863830|gb|EER68213.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
Length = 169
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELR--ILKMYRKNKR-FIAT 63
+ I TH L GEV + S + +L + N+ ++ +++ YR +K +
Sbjct: 5 VGKIVNTHSLKGEVKVISSTDFEEQRFKKGSELLITRGNQVVKEVVVESYRTHKNNLLVK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID I A + ++L++ + ELEE+EF+ ++ + FD K G++ +
Sbjct: 65 FVGIDTIEEAEKFKNLQIKIDSDNIG--ELEENEFYFHEIIGCKVFDENNKILGEIAEIL 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + IK K LIP+ + V ++++ +I I+ + GL
Sbjct: 123 TPGANDVWVIKAETGKEILIPYIEDVVKKIDVTNKRIDIE-VMEGL 167
>gi|14423897|sp|Q9KUF9|RIMM_VIBCH RecName: Full=Ribosome maturation factor rimM
Length = 182
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 7 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 67 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 124
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 125 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 177
>gi|15640584|ref|NP_230213.1| 16S rRNA-processing protein RimM [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|147674058|ref|YP_001216061.1| 16S rRNA-processing protein RimM [Vibrio cholerae O395]
gi|153216300|ref|ZP_01950390.1| 16S rRNA processing protein RimM [Vibrio cholerae 1587]
gi|153823559|ref|ZP_01976226.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|153827344|ref|ZP_01980011.1| 16S rRNA processing protein RimM [Vibrio cholerae MZO-2]
gi|227080745|ref|YP_002809296.1| 16S rRNA processing protein [Vibrio cholerae M66-2]
gi|229507173|ref|ZP_04396679.1| 16S rRNA processing protein RimM [Vibrio cholerae BX 330286]
gi|229509158|ref|ZP_04398643.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|229519632|ref|ZP_04409075.1| 16S rRNA processing protein RimM [Vibrio cholerae RC9]
gi|229520858|ref|ZP_04410280.1| 16S rRNA processing protein RimM [Vibrio cholerae TM 11079-80]
gi|229530375|ref|ZP_04419763.1| 16S rRNA processing protein RimM [Vibrio cholerae 12129(1)]
gi|229606149|ref|YP_002876797.1| 16S rRNA-processing protein RimM [Vibrio cholerae MJ-1236]
gi|254292065|ref|ZP_04962841.1| 16S rRNA processing protein RimM [Vibrio cholerae AM-19226]
gi|254850799|ref|ZP_05240149.1| 16S rRNA-processing protein [Vibrio cholerae MO10]
gi|255744213|ref|ZP_05418166.1| 16S rRNA processing protein RimM [Vibrio cholera CIRS 101]
gi|262147227|ref|ZP_06028029.1| 16S rRNA processing protein RimM [Vibrio cholerae INDRE 91/1]
gi|262169871|ref|ZP_06037561.1| 16S rRNA processing protein RimM [Vibrio cholerae RC27]
gi|297580695|ref|ZP_06942621.1| 16S rRNA-processing protein [Vibrio cholerae RC385]
gi|298500686|ref|ZP_07010489.1| 16S rRNA processing protein RimM [Vibrio cholerae MAK 757]
gi|172047728|sp|A5F9A8|RIMM_VIBC3 RecName: Full=Ribosome maturation factor rimM
gi|254797770|sp|C3LS52|RIMM_VIBCM RecName: Full=Ribosome maturation factor rimM
gi|9654992|gb|AAF93730.1| 16S rRNA processing protein RimM [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124114342|gb|EAY33162.1| 16S rRNA processing protein RimM [Vibrio cholerae 1587]
gi|126518913|gb|EAZ76136.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|146315941|gb|ABQ20480.1| 16S rRNA processing protein RimM [Vibrio cholerae O395]
gi|149738739|gb|EDM53081.1| 16S rRNA processing protein RimM [Vibrio cholerae MZO-2]
gi|150422013|gb|EDN13984.1| 16S rRNA processing protein RimM [Vibrio cholerae AM-19226]
gi|227008633|gb|ACP04845.1| 16S rRNA processing protein [Vibrio cholerae M66-2]
gi|227012388|gb|ACP08598.1| 16S rRNA processing protein [Vibrio cholerae O395]
gi|229332148|gb|EEN97636.1| 16S rRNA processing protein RimM [Vibrio cholerae 12129(1)]
gi|229342091|gb|EEO07087.1| 16S rRNA processing protein RimM [Vibrio cholerae TM 11079-80]
gi|229344321|gb|EEO09296.1| 16S rRNA processing protein RimM [Vibrio cholerae RC9]
gi|229353730|gb|EEO18666.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|229355918|gb|EEO20838.1| 16S rRNA processing protein RimM [Vibrio cholerae BX 330286]
gi|229368804|gb|ACQ59227.1| 16S rRNA processing protein RimM [Vibrio cholerae MJ-1236]
gi|254846504|gb|EET24918.1| 16S rRNA-processing protein [Vibrio cholerae MO10]
gi|255738153|gb|EET93545.1| 16S rRNA processing protein RimM [Vibrio cholera CIRS 101]
gi|262021605|gb|EEY40316.1| 16S rRNA processing protein RimM [Vibrio cholerae RC27]
gi|262031324|gb|EEY49936.1| 16S rRNA processing protein RimM [Vibrio cholerae INDRE 91/1]
gi|297535111|gb|EFH73946.1| 16S rRNA-processing protein [Vibrio cholerae RC385]
gi|297540467|gb|EFH76525.1| 16S rRNA processing protein RimM [Vibrio cholerae MAK 757]
Length = 184
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
>gi|116629444|ref|YP_814616.1| RimM protein, required for 16S rRNA processing [Lactobacillus
gasseri ATCC 33323]
gi|282850845|ref|ZP_06260219.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311110908|ref|ZP_07712305.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
gi|122273618|sp|Q044E4|RIMM_LACGA RecName: Full=Ribosome maturation factor rimM
gi|116095026|gb|ABJ60178.1| 16S rRNA processing protein RimM [Lactobacillus gasseri ATCC 33323]
gi|282557797|gb|EFB63385.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311066062|gb|EFQ46402.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
Length = 173
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+ I + HGL GEV +++ + P + +R + ++D + I+ R++K+F + F
Sbjct: 7 VGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQFYLVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
ID I A ++ +LY D +EL E ++ D+ +D + G+ G + +
Sbjct: 67 EEIDGIDQAEKVCGKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLGVLANIE 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA I EIK K+F IP + V +V+L +I +
Sbjct: 125 TPGANDIWEIKPEHGKSFWIPNIESVVNKVDLANKRIEV 163
>gi|209573740|sp|A9WEK5|RIMM_CHLAA RecName: Full=Ribosome maturation factor rimM
Length = 174
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMY-RKN 57
V +D L+ + +G G+ G++ + S +++P L R+ V ++ ++Y K
Sbjct: 4 VVMDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKP 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I I + +A++LR ++Y L DEFF D+ M+ G+ G
Sbjct: 64 GLLIIQLQTITDRDAAADLRGEEVYIAAA--DAAPLAADEFFYHDVIGMQAVTDSGEDIG 121
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+V + GAG I+ I L+P + ++ +++ E +++I PIA L+
Sbjct: 122 EVRDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD 174
>gi|325919892|ref|ZP_08181881.1| 16S rRNA processing protein RimM [Xanthomonas gardneri ATCC 19865]
gi|325549601|gb|EGD20466.1| 16S rRNA processing protein RimM [Xanthomonas gardneri ATCC 19865]
Length = 170
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ I+S+ + RY + S + L +
Sbjct: 1 MKQTERRILLGRVAGAFGVKGELKIESWTEPRSAIFRYQPWILRTPSGEESTLSGARGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K +ATF + + + + +++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKHLVATFPSVSDRDTVEAMHGIEIYVSRSVLPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ L+PF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVMVVRGDRER--LVPFVLPDFVKSVDFEANLIVVD 165
>gi|326803874|ref|YP_004321692.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650986|gb|AEA01169.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
Length = 179
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRI-LKMYRKNKRF-IAT 63
+ I T GL GEV + + + P ++ V++ + N E + + +R++K F I +
Sbjct: 8 VGKIVNTQGLKGEVRVIATTDFPEKRFQPGSQLVIFDHKNIEAWVEVVSHRQHKNFHILS 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ +I+ + +++ ++ ++L E EFF + + +D GK G+V +
Sbjct: 68 FKGMTSINDVEGFKGMEIMVAAKERHSDDLAEGEFFYDQIIGLVVYDLTGKELGKVKTIT 127
Query: 124 NFGAGSILEIKNTM--EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + I+ +K LIP+ V ++L + KI+ID + +++
Sbjct: 128 QLGPNDVWTIQRNQPGKKDVLIPYIDDVVKSIDLDDKKIVIDALEGLIDD 177
>gi|297156874|gb|ADI06586.1| 16S rRNA-processing protein RimM [Streptomyces bingchenggensis
BCW-1]
Length = 182
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 5/167 (2%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIATFS 65
MA IG HG+ GEV ++ + P + L + + + L I + R + F+
Sbjct: 1 MARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATEPASAGPLTIETGRVHSGRLLLRFA 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G + +A LR L A+ D +D + +E+++ L +++ G G++ + +
Sbjct: 61 GFADRTAAETLRGTLLIAE-VDPEDTPEDPEEYYDHQLIDLDVVTVDGTEVGRISEISHL 119
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+L ++ +IPF V E++L+ + +IDP L+ T
Sbjct: 120 PYQDLLIVRRPDGSEVMIPFVSEVVPEIDLEAQRAVIDPPPGLLDET 166
>gi|218438369|ref|YP_002376698.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 7424]
gi|218171097|gb|ACK69830.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7424]
Length = 207
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 42/200 (21%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSN--DNRELRIL--KMYR 55
+D + + TI GL GEV + S ++ P R++L N +E+ +L +
Sbjct: 1 MDDWLEIGTIVAPQGLKGEVRVASESDFPERFEQPGKRWLLPPNSVQVQEVELLNGRYIP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
K ++ +GID+I A ELR K+ K+ D +LEEDE+ DL +E + + G+
Sbjct: 61 GKKIYVVQLAGIDHIDRAEELRGYKILVKKSDRP--QLEEDEYHVADLVNLEVYHQLTGE 118
Query: 115 YWGQVCGVYNFGAGSILEI------------------------------KNTMEKTFLIP 144
G V + + G +LE+ K T LIP
Sbjct: 119 NLGIVTDILSAG-NDLLEVTLHQQPEREEKPEPDLSKVSRKSKLRKLKPKQRKPATLLIP 177
Query: 145 FTKFAVLEVNLQENKILIDP 164
F K V V+L+ +I I P
Sbjct: 178 FVKEIVPIVDLKTGRIEIKP 197
>gi|91776685|ref|YP_546441.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
gi|91710672|gb|ABE50600.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
Length = 164
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRE------LRILKMYRKNKRF 60
M I +G+ G V + Y ++ D R++L D ++ + K N
Sbjct: 1 MGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVEKAKVHNDLL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ A + + + R + E EE E++ +DL ++ ++Q +GQV
Sbjct: 61 LVKLQGIDDRDQAFSCKGMYVAVYRDELP--EPEEGEYYWSDLIGLQVRNQQEVDFGQVV 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V+ GA +L +K E+ L+PF VLEV+ +L+D
Sbjct: 119 DVFATGANDVLVVKGDRER--LVPFIGQVVLEVDTDGKTMLVD 159
>gi|302537191|ref|ZP_07289533.1| 16S rRNA processing protein RimM [Streptomyces sp. C]
gi|302446086|gb|EFL17902.1| 16S rRNA processing protein RimM [Streptomyces sp. C]
Length = 208
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L+ + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLSPGAVLRTEPASAGPLTIETGRVHSSRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEEL--EEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ + +A LR+ L A D EL EEDE+++ L +++ G G++
Sbjct: 63 FEGVKDRTAAEALRNTLLIA---DVDPAELPEEEDEYYDHQLMDLDVVLEDGTEIGRITE 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + + ++ +IPF + V E++L+E + +I P
Sbjct: 120 ISHLPSQDLFIVERPDGTEVMIPFVEEIVAEIDLEEQRCVITP 162
>gi|254382008|ref|ZP_04997370.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
gi|194340915|gb|EDX21881.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
Length = 196
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLETEPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR++ L A+ + E EEDE+++ L +++ G G++ +
Sbjct: 63 FEGVKDRTGAEALRNILLIAEVDPTELPE-EEDEYYDHQLMDLDVVLEDGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 122 HLPSQDLFIVERPDGTEVMIPFVEEIVAEIDLEEQRCVITP 162
>gi|134093875|ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimonas arsenicoxydans]
gi|209573562|sp|A4G2T6|RIMM_HERAR RecName: Full=Ribosome maturation factor rimM
gi|133737778|emb|CAL60823.1| 16S rRNA processing protein [Herminiimonas arsenicoxydans]
Length = 177
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK---NKRFIAT 63
LVL+ I +GLNG V + Y+ + L + D E R + M + + +A
Sbjct: 7 LVLVGYISGAYGLNGWVRVRPYSADADALLNAKTWWLDKPEFRDVAMMQSKIHSGDVVAQ 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ +A L+ + R F L ++EF+ DL +E + QG GQV +
Sbjct: 67 LMGVAGRDAAEALKGATVQIPRSHFP--ALSDNEFYWVDLIGLEVENLQGVRLGQVSDMM 124
Query: 124 NFGAGSILE--IKNTME------KTFLIPFTKFAVLEVNLQENKILID 163
+ GA IL + T E + LIPF + V+ ++ KI +D
Sbjct: 125 DNGAHPILRVAVPQTSEADPKAAQELLIPFVEQFVITIDQTAKKITVD 172
>gi|294788701|ref|ZP_06753942.1| 16S rRNA processing protein RimM [Simonsiella muelleri ATCC 29453]
gi|294483183|gb|EFG30869.1| 16S rRNA processing protein RimM [Simonsiella muelleri ATCC 29453]
Length = 169
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYID---SYANNPIDLNRY-VLYSNDNRELRILKMYRK 56
M + V M I G+ G V + Y ++ +D +++ ++ ND +L +
Sbjct: 1 MNNMQNWVAMGYIKGAFGVKGWVKVQPSTEYTDSLLDYSQWRLVQGNDVMMATLLNGHVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F I + SA+ LR +Y R+ F E +E+EF+ TDL M+ +R
Sbjct: 61 NGELHVKFEQIQDRDSAALLRGYTIYIPREQFA--EPDENEFYWTDLMGMQVHNRDNACL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L +K + LIPF + +VN I +D
Sbjct: 119 GEVINIMETGAHDVLVVKGEFGEK-LIPFVSQFIDDVNELTQTITVD 164
>gi|300933898|ref|ZP_07149154.1| 16S rRNA-processing protein RimM [Corynebacterium resistens DSM
45100]
Length = 199
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 17 HGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYRKNKRFIATFSGIDN 69
HG+ GEV +++ + P +L R+V + + +R L I K+ R + TF + +
Sbjct: 18 HGVRGEVVVEATTDQP-EL-RFVVGHELTGIQAGKSRTLTIAKIRPHQGRLLMTFEEVPD 75
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-----DRQGKYW-------- 116
A LR ++ +A + DEE +++ LE + D Q Y
Sbjct: 76 RTQAESLRGVRFFADPIEDPDEE----SYYDHQLEGLRVLNCGNVDEQTAYARAYEGAQP 131
Query: 117 -----GQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V GV + AG+ LE+ T T LIPF V V+L + ++I P
Sbjct: 132 EPTDIGEVTGVMHSPAGTTLEVTIDEDTELPTAGHTILIPFRHAIVPIVDLDNDALVITP 191
>gi|229512831|ref|ZP_04402298.1| 16S rRNA processing protein RimM [Vibrio cholerae TMA 21]
gi|229350080|gb|EEO15033.1| 16S rRNA processing protein RimM [Vibrio cholerae TMA 21]
Length = 184
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDLREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
>gi|218887969|ref|YP_002437290.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758923|gb|ACL09822.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 210
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 9/179 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D + + +G HGL GEV +D +A +P DL R L+ R + + R R
Sbjct: 4 DSFIEIGLVGRPHGLRGEVGVDFWAESP-DLLRGTLWLRPGRGAPRPHTVAAVRRHQGRP 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQV 119
+ F GI + +A LR + + + E EDE + +L + G G +
Sbjct: 63 LVLFEGIADRSAAETLRGMHVLVPKDRLP--EPAEDEVYLHELLGLRVLLHDTGAALGTL 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V G + I+ K L+P + V ++L ++ I P GL ++ P+
Sbjct: 121 DDVQMPGGQEVWSIRTADGKEVLLPAVEEFVASIDLDAREVRITP-PPGLMELYLEAPE 178
>gi|330466289|ref|YP_004404032.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
gi|328809260|gb|AEB43432.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
Length = 187
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 23/180 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP--------IDLNRYVLYSNDNRE----------- 47
L+++ IG HG+ GEV ++ + P + + +E
Sbjct: 2 LLIVGRIGKPHGIRGEVTVEVRTDEPDTRFAPGVVLATMPGVVPRGGQEPAAEPGERYEV 61
Query: 48 ---LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
L + + R + F G+ + A LR L D E + +EF + L
Sbjct: 62 PDALTVEAVRWHQGRLLVAFEGVLDRDVAEALRGTLLTVDSADVAPPE-DPEEFHDHQLV 120
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G+ G+V + + A +L ++ +T LIPF K V EV+L ++++DP
Sbjct: 121 GLAVVTPSGERLGEVARIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRVVVDP 180
>gi|261210131|ref|ZP_05924429.1| 16S rRNA processing protein RimM [Vibrio sp. RC341]
gi|260840896|gb|EEX67438.1| 16S rRNA processing protein RimM [Vibrio sp. RC341]
Length = 176
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 1 MGKQNERLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIDQKGEWVEHKVEGWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 61 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTSSGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 119 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 171
>gi|121533793|ref|ZP_01665620.1| 16S rRNA processing protein RimM [Thermosinus carboxydivorans Nor1]
gi|121307784|gb|EAX48699.1| 16S rRNA processing protein RimM [Thermosinus carboxydivorans Nor1]
Length = 303
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA-TF 64
LV + I HG+ G+V I + P + Y +D L + + R++K+FI F
Sbjct: 143 LVAIGKIVAPHGVRGDVRIIPLTDFPERFQQLKTAYFDDGTRLSV-ESARQHKQFILLKF 201
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + ++ LR + R+D L E ++ ++ ++ +D G Y G+V V
Sbjct: 202 KGLQDRNAVENLRGKLVKVPRKDLV--PLPEGHYYIFEIIGLKVYDIDGAYLGKVTDVMQ 259
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ + +++ ++ LIP K V E++L + +++I P
Sbjct: 260 TGSNDVYVVEDC-DRPLLIPAIKEVVKEIDLAQGRMVIKP 298
>gi|262401734|ref|ZP_06078300.1| 16S rRNA processing protein RimM [Vibrio sp. RC586]
gi|262352151|gb|EEZ01281.1| 16S rRNA processing protein RimM [Vibrio sp. RC586]
Length = 184
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 9 MGKQNERLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
>gi|326204804|ref|ZP_08194658.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
gi|325985016|gb|EGD45858.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
Length = 169
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKM--YRKNKRF-IAT 63
+++ + THG+ GE+ + ++P + +Y + N L + + K+F I
Sbjct: 5 LIVGQLVNTHGVKGELKATAQTDDPQRFRKLKWVYIDKNGSLEKCNISGVKFFKQFVIIK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID+I A +L+ L R + +L E+ FF D+ ++ +D + G++ V
Sbjct: 65 FEGIDSIEEAEKLKGFYLKVDRAN--AVKLPENSFFIADILGLKVYDENNQLLGELKDVI 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G+ + ++++ K L+P K V E++++E KI
Sbjct: 123 QTGSNDVYVVRDSEAKEILVPALKSVVKEISIEEGKI 159
>gi|114564083|ref|YP_751597.1| 16S rRNA-processing protein [Shewanella frigidimarina NCIMB 400]
gi|122299044|sp|Q07Z06|RIMM_SHEFN RecName: Full=Ribosome maturation factor rimM
gi|114335376|gb|ABI72758.1| 16S rRNA processing protein RimM [Shewanella frigidimarina NCIMB
400]
Length = 176
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSND-NRELRILKMYRKNKRFI 61
+LV++ +G++HG+ G + I SY ++ D + +++ RE+++ + + K +
Sbjct: 6 ELVVLGKLGSSHGIKGWLKITSYTDSVEGIFDYSPWLIKEQGVWREVKVAQWRFQGKAVV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ A L + ++ + KD L++ EF++ DL E + G G V
Sbjct: 66 AELEGVATREHAQMLTNCEIAIMPEQMKD--LDDSEFYHRDLIGCEVTNINGYNMGIVDQ 123
Query: 122 VYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ +L IK + F +IPF + +V+LQ +IL+D
Sbjct: 124 IVETGSNDVLLIKANAKDAFGKAERMIPFVPEQFIKQVDLQGKQILVD 171
>gi|291288181|ref|YP_003504997.1| 16S rRNA processing protein RimM [Denitrovibrio acetiphilus DSM
12809]
gi|290885341|gb|ADD69041.1| 16S rRNA processing protein RimM [Denitrovibrio acetiphilus DSM
12809]
Length = 169
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYS---NDNRELRILKMYRKNKRF 60
KL+ + + THGL+GE+ + +P D +Y++ + N L I M
Sbjct: 2 KLIRVGRLINTHGLDGELVLQVLTESPEVFDDMQYMMLAVKGNVQASLEIEYMQEYKGNI 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+++I +A + + +++ + + + E + +LE FD+ G+ G +
Sbjct: 62 LVGFAGVEDIDTAKKYKGMEVVIPEEMLPELD---GEIYWHELEGCPVFDKNGELVGALA 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G I IK ++ +LI VLE+N++E K++ID I
Sbjct: 119 DYMEAGGADIFRIKCE-DEYYLISNNTDHVLEINVKEKKLVIDRIG 163
>gi|289435136|ref|YP_003465008.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171380|emb|CBH27924.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 172
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS---YANNPIDL-NRYVLYSNDNR--ELRILKMYRKN 57
++K+ + I THGL GE+ + + +A+ + N L+ +++ E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCIVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIKVMEGLLD 172
>gi|314936599|ref|ZP_07843946.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
gi|313655218|gb|EFS18963.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
Length = 166
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 9/167 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IA 62
V + I THG+ GEV + S + + ++ ++ + E+ + + YR +K F +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLIVNHHHNEIEMTITSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++I+ + + L+ +R D +D EL E+EF+ +D+ F+ G+V +
Sbjct: 63 KFEGINHINDVEQYKGDYLFQER-DHEDIELNENEFYYSDIIGCTVFNNDTPI-GRVINI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + +K +K +LIP+ V EV+++ I I + L
Sbjct: 121 FETGANDVWVVKG--DKEYLIPYIADVVKEVDVEHKTIRITSMEGLL 165
>gi|163847612|ref|YP_001635656.1| 16S rRNA processing protein RimM [Chloroflexus aurantiacus J-10-fl]
gi|222525468|ref|YP_002569939.1| 16S rRNA processing protein RimM [Chloroflexus sp. Y-400-fl]
gi|163668901|gb|ABY35267.1| 16S rRNA processing protein RimM [Chloroflexus aurantiacus J-10-fl]
gi|222449347|gb|ACM53613.1| 16S rRNA processing protein RimM [Chloroflexus sp. Y-400-fl]
Length = 169
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMY-RKNKR 59
+D L+ + +G G+ G++ + S +++P L R+ V ++ ++Y K
Sbjct: 1 MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I I + +A++LR ++Y L DEFF D+ M+ G+ G+V
Sbjct: 61 LIIQLQTITDRDAAADLRGEEVYIAAA--DAAPLAADEFFYHDVIGMQAVTDSGEDIGEV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GAG I+ I L+P + ++ +++ E +++I PIA L+
Sbjct: 119 RDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD 169
>gi|229829007|ref|ZP_04455076.1| hypothetical protein GCWU000342_01092 [Shuttleworthia satelles DSM
14600]
gi|229792170|gb|EEP28284.1| hypothetical protein GCWU000342_01092 [Shuttleworthia satelles DSM
14600]
Length = 172
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+ I +THGL GEV + DL +Y+ + EL I+ + K+ I
Sbjct: 7 VGVITSTHGLKGEVKVYPTTEESRRFDDLCGQKVYAGRDGSLEELTIVSVRYFKKQVILR 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ +NI S LR +L R+ + LEE E++ DL ++ G+ G + V
Sbjct: 67 FAEKNNIDEVSSLRQARLLISRE--QALPLEEGEYYVADLLGLKVVADDGRELGILTDVL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + I + +IP + VL+ +L+ +IL+
Sbjct: 125 TTGANDVYVIGRQGQSDLMIPAIRQCVLKTDLEAGEILV 163
>gi|262164014|ref|ZP_06031753.1| 16S rRNA processing protein RimM [Vibrio mimicus VM223]
gi|262027542|gb|EEY46208.1| 16S rRNA processing protein RimM [Vibrio mimicus VM223]
Length = 182
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + + E ++ R
Sbjct: 7 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 67 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYNL 124
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 125 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 177
>gi|296139336|ref|YP_003646579.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
gi|296027470|gb|ADG78240.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
Length = 173
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GE+ +D ++P L + D + + + R
Sbjct: 3 LVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRRPRAKDTQTYTVAASREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A ELR D + + + DEF++ +LE + G G +
Sbjct: 63 LVRLEGVTDRTAADELRGTLFVIDSADVQPSD-DPDEFYDHELEGLAVRTADGTEVGVIA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G +L +K + LIPF V V++ I IDP
Sbjct: 122 EVLHPPGGELLSVKAPDGREILIPFVTAIVPVVDVAGGFIEIDP 165
>gi|229821021|ref|YP_002882547.1| 16S rRNA processing protein RimM [Beutenbergia cavernae DSM 12333]
gi|229566934|gb|ACQ80785.1| 16S rRNA processing protein RimM [Beutenbergia cavernae DSM 12333]
Length = 182
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE------LRILKMYRKNK 58
D V++A +G GL GEV + + D NR + + L I ++ R
Sbjct: 7 DDDVVLARLGAALGLRGEVRLTVRTD---DENRLAPGTKVRTDPPAAGPLTIARLRRTGA 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ F+ I + +A LR ++L A+ + +++D ++ +L +E G G+
Sbjct: 64 GYVIAFAEIADRTAAEALRGVELVAEPR------VDDDAWYPRELVGLEAVTPDGHVLGE 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V V + A +L + L+PF V V++ ++++DP
Sbjct: 118 VVAVEHPPAHDVLVVVEPSGAHALVPFVTALVPSVDVAAGRVVVDP 163
>gi|256832219|ref|YP_003160946.1| 16S rRNA processing protein RimM [Jonesia denitrificans DSM 20603]
gi|256685750|gb|ACV08643.1| 16S rRNA processing protein RimM [Jonesia denitrificans DSM 20603]
Length = 184
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ TIG HGL+GEV + + P + ++ D L + + R+ TF
Sbjct: 5 IGTIGKAHGLHGEVSVIVTTDVPQERFVPGHKIATQPADRGPLTVTRQRAHQDRWYVTFE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I + A R ++L + D E+D ++ +LE +E G G+V G+
Sbjct: 65 EIPDRTVAESYRGVELVIE----VDHSDEDDAWYPHELEGLEVRRLSGARVGRVAGLEPL 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A L I + +PF K V V++ ++IDP
Sbjct: 121 PAQDALIIDEDGGERVYLPFLKIFVPTVDVAGGYVVIDP 159
>gi|258623028|ref|ZP_05718041.1| 16S rRNA-processing protein [Vibrio mimicus VM573]
gi|258623818|ref|ZP_05718775.1| 16S rRNA-processing protein [Vibrio mimicus VM603]
gi|258583941|gb|EEW08733.1| 16S rRNA-processing protein [Vibrio mimicus VM603]
gi|258584641|gb|EEW09377.1| 16S rRNA-processing protein [Vibrio mimicus VM573]
Length = 184
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 179
>gi|330959142|gb|EGH59402.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 179
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRI-LKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + N +D + L + E ++ L R +F
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 61 IAT-FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ T G+D+ A L + R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYDICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL V++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAVDMGAGEMKVD 174
>gi|254776207|ref|ZP_05217723.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 175
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
Query: 16 THGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
HG++GE+ ++ ++P L R I R + +G+
Sbjct: 11 AHGISGEIVVEIRTDDPAARLAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVT 70
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + D + E D +++ LE ++ G+ G V V + AG
Sbjct: 71 DRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGRRVGAVAEVLHTAAG 129
Query: 129 SILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDP 164
+L +++ + + L+PF V V+L++ I IDP
Sbjct: 130 ELLAVRDDADGAPREVLVPFVSAIVTAVSLEDGLIEIDP 168
>gi|153954029|ref|YP_001394794.1| 16S rRNA-processing protein RimM [Clostridium kluyveri DSM 555]
gi|229485583|sp|A5N815|RIMM_CLOK5 RecName: Full=Ribosome maturation factor rimM
gi|146346910|gb|EDK33446.1| Hypothetical protein CKL_1404 [Clostridium kluyveri DSM 555]
Length = 162
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR------ILK----MYRK 56
+ + I THGL GE+ + + D+NR+ +EL+ ILK +
Sbjct: 4 FITVGQIINTHGLKGELKVYPLTD---DINRF-------KELKSVYVEGILKNITGCKLQ 53
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K+ I GID+I A E + L R++ +LEE +F D+ D +G ++
Sbjct: 54 SKKVILKIEGIDSIEKALEYKGKYLEVSRENAV--KLEEGRYFIVDIVGCRVIDEEGVFY 111
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G++ V + + IK E LIP + VL+V++++ +I+I P+
Sbjct: 112 GKISEVIHTHRNDVYWIKGDNE--LLIPAIENVVLKVDVEKQEIIIKPV 158
>gi|262172353|ref|ZP_06040031.1| 16S rRNA processing protein RimM [Vibrio mimicus MB-451]
gi|261893429|gb|EEY39415.1| 16S rRNA processing protein RimM [Vibrio mimicus MB-451]
Length = 176
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + + E ++ R
Sbjct: 1 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 61 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L +K ++ F LIPF + V++ V+ Q +I +D
Sbjct: 119 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVD 171
>gi|285017747|ref|YP_003375458.1| 16s rrna-processing protein [Xanthomonas albilineans GPE PC73]
gi|283472965|emb|CBA15470.1| probable 16s rrna-processing protein [Xanthomonas albilineans]
Length = 170
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYRKNKRF 60
+ +L+ + G+ GE ++S+ + + RY ++ D E L ++ K
Sbjct: 6 RRILLGRVLGAFGIRGEAKLESWTEPRLAIFRYQPWIVRKPDGSESTLTGVRGRASGKSL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IA+ + + + LR ++Y R DE++ DLE ++ +G GQV
Sbjct: 66 IASLPEVSDRDAVEALRGTEIYVTRSSLPPPH--PDEYYWVDLEGLDVRTVEGVALGQVS 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
+++ GA +L ++ E+ L+PF + V V+ + N I++D
Sbjct: 124 HLFSTGANDVLVVRGERER--LVPFVQPDYVRSVDFEANLIVVD 165
>gi|220905064|ref|YP_002480376.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869363|gb|ACL49698.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 168
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS---NDNRELRILKMYRKNKRFIATFSG 66
M T+ HG+ GE+ ID YA++P+ L + + R +R + + R + G
Sbjct: 1 MGTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEG 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + ++ LR KL KR+ E E+DE + DL + F GK G + + +
Sbjct: 61 VVDRNAVEGLRGCKLLTKREALP--EPEDDEVYLEDLLGGDVFLPDGKRLGTL-DHFEYP 117
Query: 127 AGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDP 164
AG LE+ M + L P + +L+ ++IDP
Sbjct: 118 AG--LEMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDP 156
>gi|66044531|ref|YP_234372.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
B728a]
gi|75503052|sp|Q4ZWY8|RIMM_PSEU2 RecName: Full=Ribosome maturation factor rimM
gi|63255238|gb|AAY36334.1| RimM protein:PRC-barrel [Pseudomonas syringae pv. syringae B728a]
gi|330969026|gb|EGH69092.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 179
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|323526928|ref|YP_004229081.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1001]
gi|323383930|gb|ADX56021.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1001]
Length = 244
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 71 VEVGAIVDAYGLKGWVKVAAHADAGRGGDALLSAKRWWLMKGRERQSAPSLQAKLHSDSV 130
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + +A LR ++Y R +F LE DEF+ DL +E + G G+V
Sbjct: 131 VAHLGGVADRDAALALRGSRVYISRSEFP--ALEADEFYWVDLIGLEVVNLAGANLGKVA 188
Query: 121 GVYNFGAGSILEIK-NTMEKTF-------LIPFTKFAVLEVNLQENKILID 163
G+ + GA S+L ++ +KT LIPF V V+ +I +D
Sbjct: 189 GMIDNGAHSVLRVEYPAADKTGKPVAAERLIPFVGVFVKAVDQAAKQITVD 239
>gi|209694241|ref|YP_002262169.1| 16S rRNA-processing protein RimM [Aliivibrio salmonicida LFI1238]
gi|238058947|sp|B6EGC0|RIMM_ALISL RecName: Full=Ribosome maturation factor rimM
gi|208008192|emb|CAQ78335.1| 16S rRNA processing protein RimM [Aliivibrio salmonicida LFI1238]
Length = 175
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKN 57
M K D+++++ G ++G+ G + + S+ + P D ++ D ++ ++++
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRH 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + G++ A +L++ K EL EDEF+ +L ME QG G
Sbjct: 61 KGLVCKLEGLEVREEAQAYTNLEIAVKADALP--ELSEDEFYWRELFGMEVVTSQGYGLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLEV 153
V ++ G+ +L +K ++ F LIPF V++V
Sbjct: 119 IVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKV 159
>gi|330895931|gb|EGH28215.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330950743|gb|EGH51003.1| 16S rRNA-processing protein RimM [Pseudomonas syringae Cit 7]
gi|330975466|gb|EGH75532.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 179
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|227543209|ref|ZP_03973258.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181018|gb|EEI61990.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51866]
Length = 227
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYRKNKRFIATFSGID 68
THG+ GEV +D ++ +D YV ++L I M R + F I
Sbjct: 69 THGIKGEVVVDPTTDD-LDQRFYVGAVLTGRAGGGKEQQLTIQSMRPHQGRLLVKFEEIP 127
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ + LR ++ +A + + EED +++ +LE + +G G+V + + A
Sbjct: 128 DRTAGESLRGMQFFAPPLEH---DPEEDGYYDHELEGLAVI-HEGTRVGEVTDITHGPAA 183
Query: 129 SILEIKNTM---EKTFLIPFTKFAVLEVNLQENKILIDP 164
++L + TM E+ LIP V E+NL E I P
Sbjct: 184 TLLTV--TMDEDERDVLIPLVDAIVPEINLGEKTATITP 220
>gi|254522928|ref|ZP_05134983.1| 16S rRNA processing protein RimM [Stenotrophomonas sp. SKA14]
gi|219720519|gb|EED39044.1| 16S rRNA processing protein RimM [Stenotrophomonas sp. SKA14]
Length = 173
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M +++ +L+ + G+ GE+ ++S+ + RY ++ S E I ++
Sbjct: 4 MKDIERRILLGRVVGAFGVRGEIKLESWTEPRSAIFRYQPWIVRSPSGVETTIEGVRGRD 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F G+++ + + ++Y R + DE++ DLE ++ +G
Sbjct: 64 SGKHLVARFPGVEDRDTVEAMHGTEVYVARSALPPPK--PDEYYWVDLEGLDVKTTEGVA 121
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFA-VLEVNLQENKILID 163
GQV +++ GA ++ ++ E+ +IPF + V V+ + N +++D
Sbjct: 122 LGQVSHLFSTGANDVVVVRGDRER--MIPFVQPDFVKSVDFEANLVVVD 168
>gi|227488606|ref|ZP_03918922.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091500|gb|EEI26812.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51867]
Length = 172
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYRKNKRFIATFSGID 68
THG+ GEV +D ++ +D YV ++L I M R + F I
Sbjct: 14 THGIKGEVVVDPTTDD-LDQRFYVGAVLTGRAGGGKEQQLTIQSMRPHQGRLLVKFEEIP 72
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ + LR ++ +A + + EED +++ +LE + +G G+V + + A
Sbjct: 73 DRTAGESLRGMQFFAPPLEH---DPEEDGYYDHELEGLAVI-HEGTRVGEVTDITHGPAA 128
Query: 129 SILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++L + + E+ LIP V E+NL E I P
Sbjct: 129 TLLTVTMDEDERDVLIPLVDAIVPEINLGEKTATITP 165
>gi|126173449|ref|YP_001049598.1| 16S rRNA-processing protein RimM [Shewanella baltica OS155]
gi|152999788|ref|YP_001365469.1| 16S rRNA-processing protein RimM [Shewanella baltica OS185]
gi|160874407|ref|YP_001553723.1| 16S rRNA-processing protein RimM [Shewanella baltica OS195]
gi|217974259|ref|YP_002359010.1| 16S rRNA-processing protein RimM [Shewanella baltica OS223]
gi|304409372|ref|ZP_07390992.1| 16S rRNA processing protein RimM [Shewanella baltica OS183]
gi|307303730|ref|ZP_07583483.1| 16S rRNA processing protein RimM [Shewanella baltica BA175]
gi|171704554|sp|A6WKR7|RIMM_SHEB8 RecName: Full=Ribosome maturation factor rimM
gi|171769975|sp|A3D1W6|RIMM_SHEB5 RecName: Full=Ribosome maturation factor rimM
gi|189040852|sp|A9L5P6|RIMM_SHEB9 RecName: Full=Ribosome maturation factor rimM
gi|254797761|sp|B8EBP2|RIMM_SHEB2 RecName: Full=Ribosome maturation factor rimM
gi|125996654|gb|ABN60729.1| 16S rRNA processing protein RimM [Shewanella baltica OS155]
gi|151364406|gb|ABS07406.1| 16S rRNA processing protein RimM [Shewanella baltica OS185]
gi|160859929|gb|ABX48463.1| 16S rRNA processing protein RimM [Shewanella baltica OS195]
gi|217499394|gb|ACK47587.1| 16S rRNA processing protein RimM [Shewanella baltica OS223]
gi|304351890|gb|EFM16288.1| 16S rRNA processing protein RimM [Shewanella baltica OS183]
gi|306912628|gb|EFN43051.1| 16S rRNA processing protein RimM [Shewanella baltica BA175]
gi|315266642|gb|ADT93495.1| 16S rRNA processing protein RimM [Shewanella baltica OS678]
Length = 176
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSN-DNRELRILKMYRKNKRFIAT 63
V++ +G+ HG+ G + I +Y ++ D + +++ N + RE+++ + + K +A
Sbjct: 8 VVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQGKAVVAL 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A L + ++ + D L DEF+ DL E + G G V +
Sbjct: 68 LDGVETREQAQMLTNCEIAILPEQMND--LPADEFYWRDLIGCEVVNTTGYNMGIVDQIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L +K + +F +IPF ++ V+LQ +IL+D
Sbjct: 126 ETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTVDLQGKQILVD 171
>gi|302185526|ref|ZP_07262199.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
642]
Length = 179
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|217076195|ref|YP_002333911.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
gi|226734093|sp|B7IEQ6|RIMM_THEAB RecName: Full=Ribosome maturation factor rimM
gi|217036048|gb|ACJ74570.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
Length = 178
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKR----- 59
V +A +G THGL GE+ + + N P L LY+ ++ + + +N R
Sbjct: 13 VAVAILGKTHGLKGELKLHPFTNFPEIIESLEEIFLYNEKTKQFMVATV--ENLRLADGY 70
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+I +G++N+ +A + K+Y + + + L +DE++ ++ + D GK G V
Sbjct: 71 YIIKLNGVENVENARKFVGSKVYINKDELPN--LSKDEYYFFEIVGSQVIDESGKVLGVV 128
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V G+ ++ + E LIP ++ ++ + KI++
Sbjct: 129 DEVIQTGSNDVIVVNKNKEDEILIPVIYDYIITLDKENKKIVV 171
>gi|118594350|ref|ZP_01551697.1| 16S rRNA processing protein RimM [Methylophilales bacterium
HTCC2181]
gi|118440128|gb|EAV46755.1| 16S rRNA processing protein RimM [Methylophilales bacterium
HTCC2181]
Length = 167
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNREL---RILKMYRKNKR 59
D +V+M I HG+ G + + + L+ Y L S D + ++ K+K
Sbjct: 3 DDVVIMGKIVGPHGIKGWLKVHPFTEEIGTLSNYPQWLISKDEKHWVGHKVETATVKDKT 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ GID+ + + + + +++ +L+ D ++ +DL ++ + G Y+G +
Sbjct: 63 LLVKLVGIDDRNGSDSVNKNMVGILKEELP--KLDADTYYWSDLIGLDVQNEAGYYFGSI 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ IK E+ FLIP+ +++V+L+ K+L+D
Sbjct: 121 QTMMETGSNDVMVIKG--EREFLIPYLPDVIIKVDLEAKKVLVD 162
>gi|49081574|gb|AAT50187.1| PA3744 [synthetic construct]
Length = 176
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELP--SLEEGEYYWHQLEGLKVIDQGRQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|219854643|ref|YP_002471765.1| hypothetical protein CKR_1300 [Clostridium kluyveri NBRC 12016]
gi|219568367|dbj|BAH06351.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 166
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR------ILK----MYRK 56
+ + I THGL GE+ + + D+NR+ +EL+ ILK +
Sbjct: 8 FITVGQIINTHGLKGELKVYPLTD---DINRF-------KELKSVYVEGILKNITGCKLQ 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K+ I GID+I A E + L R++ +LEE +F D+ D +G ++
Sbjct: 58 SKKVILKIEGIDSIEKALEYKGKYLEVSREN--AVKLEEGRYFIVDIVGCRVIDEEGVFY 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G++ V + + IK E LIP + VL+V++++ +I+I P+
Sbjct: 116 GKISEVIHTHRNDVYWIKGDNE--LLIPAIENVVLKVDVEKQEIIIKPV 162
>gi|78224065|ref|YP_385812.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
gi|109893018|sp|Q39RN7|RIMM_GEOMG RecName: Full=Ribosome maturation factor rimM
gi|78195320|gb|ABB33087.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
Length = 173
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRE--LRILKMYR 55
M+ LVL+ + THG+ G++ + ++ + + + L DNR+ + +
Sbjct: 1 MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAV 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + T G NI+ L +L+A+R F L+E EF+ DL + +G
Sbjct: 61 HRNRVLLTLKGFANINEVLHLVGRELFARRDQFP--PLDEGEFYWCDLIGLSVTTSEGLS 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G++ + G+ + +++ E+ +LIP + V+ V+L + + + P
Sbjct: 119 LGRIEEIIATGSNDVYVVRDG-EREYLIPALEDIVVGVDLDKGIMTVSP 166
>gi|53802419|ref|YP_112924.1| 16S rRNA processing protein RimM [Methylococcus capsulatus str.
Bath]
gi|59798629|sp|Q60BS2|RIMM_METCA RecName: Full=Ribosome maturation factor rimM
gi|53756180|gb|AAU90471.1| 16S rRNA processing protein RimM [Methylococcus capsulatus str.
Bath]
Length = 172
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D+ V++ + G+ G V S+ + P++L Y ++ + R +L+
Sbjct: 8 DRSVVVGRVSGAFGVRGWVKAVSFTDPPVNLVGYRPWTLRRGDAERRADVLEGREHGNAV 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D A L+ ++ +R E++ DL ++ + G+V
Sbjct: 68 IVRLQGVDTREQAEALKGFEVTVRRSQLPPPA--PGEYYRVDLVGLKVVNLGETVLGEVV 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFA-VLEVNLQENKILID 163
V GA +L ++ E+ L+PF + V VNL+E++I++D
Sbjct: 126 DVMETGANDVLVVQGDRER--LLPFVQGVFVKSVNLEESRIVVD 167
>gi|15598939|ref|NP_252433.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAO1]
gi|14423891|sp|Q9HXQ0|RIMM_PSEAE RecName: Full=Ribosome maturation factor rimM
gi|9949912|gb|AAG07131.1|AE004793_8 16S rRNA processing protein [Pseudomonas aeruginosa PAO1]
Length = 175
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELP--SLEEGEYYWHQLEGLKVIDQGRQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K ++ L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|229491346|ref|ZP_04385170.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
gi|229321631|gb|EEN87428.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
Length = 190
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYR------KN 57
+++ + +HG+ GE+ ++ + P D R+ VL RE LK Y +
Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPED--RFAVGSVLRGRKPRE-STLKSYTVEAARDHS 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
R + G+ + A LR + + + + DEF++ +LE ++ G G
Sbjct: 60 GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSD-DPDEFYDHELEGLKVVLTDGAEVG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILIDP 164
V V + AG +L I+ E + LIPF V V++ + ++I+P
Sbjct: 119 SVIEVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEP 167
>gi|73748405|ref|YP_307644.1| 16S rRNA processing protein RimM [Dehalococcoides sp. CBDB1]
gi|147669185|ref|YP_001214003.1| 16S rRNA processing protein RimM [Dehalococcoides sp. BAV1]
gi|289432453|ref|YP_003462326.1| 16S rRNA processing protein RimM [Dehalococcoides sp. GT]
gi|109893012|sp|Q3ZZT5|RIMM_DEHSC RecName: Full=Ribosome maturation factor rimM
gi|189040133|sp|A5FRP5|RIMM_DEHSB RecName: Full=Ribosome maturation factor rimM
gi|73660121|emb|CAI82728.1| 16S rRNA processing protein RimM [Dehalococcoides sp. CBDB1]
gi|146270133|gb|ABQ17125.1| 16S rRNA processing protein RimM [Dehalococcoides sp. BAV1]
gi|288946173|gb|ADC73870.1| 16S rRNA processing protein RimM [Dehalococcoides sp. GT]
Length = 166
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + I SGID+I +A EL+D + K EL E +++ L +E D G
Sbjct: 55 QKAQVIVHLSGIDDIDTALELKDALVEIPASALK--ELPEGVYYDFQLIGLEVVDLSGVK 112
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GQ+ + + + I + + K LIP K V E+NL+ KI+IDPI L+
Sbjct: 113 IGQIKEILHMPSNDIY-VSSYGVKEALIPAIKDVVKEINLKTGKIIIDPIPGLLD 166
>gi|152991244|ref|YP_001356966.1| 16S rRNA processing protein RimM [Nitratiruptor sp. SB155-2]
gi|172048734|sp|A6Q550|RIMM_NITSB RecName: Full=Ribosome maturation factor rimM
gi|151423105|dbj|BAF70609.1| 16S rRNA processing protein RimM [Nitratiruptor sp. SB155-2]
Length = 173
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
K + +A +G T GL+G++ + + P + + +D L I + R F
Sbjct: 2 KKLTVARLGRTVGLHGDMKLHILTDFPEQFQKGSTFESDRGSLTIESV--NPARGTVKFQ 59
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID++ A + + LY+ + K L EDE+F D+ + F+ +GK G+V +
Sbjct: 60 GIDSVDEAKKYTNAYLYSDEETTKKSFPLGEDEYFWFDILGCDVFE-EGKRLGKVVDIQR 118
Query: 125 FGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
AG L ++ K+FLIPF + +V+L + +I
Sbjct: 119 LPAGDYLLVETDKSFVDMKKAKSFLIPFLDMFIEDVHLDQKRI 161
>gi|330831189|ref|YP_004394141.1| ribosome maturation factor rimM [Aeromonas veronii B565]
gi|328806325|gb|AEB51524.1| Ribosome maturation factor rimM [Aeromonas veronii B565]
Length = 173
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDN-RELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ A D N +++ N RE+R+ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWLINQNGAWREIRVSSWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKLDGIDVREDALALTNVEIGVPADLLP--ALPEGEFYWRDLIGCSVVTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ +L ++ ++ F LIPF + V++ ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKNIDLTVRTIEVD 168
>gi|159036842|ref|YP_001536095.1| 16S rRNA-processing protein RimM [Salinispora arenicola CNS-205]
gi|209573593|sp|A8M679|RIMM_SALAI RecName: Full=Ribosome maturation factor rimM
gi|157915677|gb|ABV97104.1| 16S rRNA processing protein RimM [Salinispora arenicola CNS-205]
Length = 180
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 23/177 (12%)
Query: 7 LVLMATIGTTHGLNGEVYID-------------------SYANNPIDLNRYVLYSNDNRE 47
++++ IG HG+ GEV ++ AN P Y + S E
Sbjct: 1 MLVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPASPGAYRVPSELTVE 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + + + F G+ + + A LR + R D + +EF + L +
Sbjct: 61 T---ARWHQGRLLLVAFEGVLDRNVAEALRGTFVGVDRADVT-APTDPEEFHDHQLVGLA 116
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ G++ + + A +L ++ ++ LIPF + V EV+L ++++DP
Sbjct: 117 VVTSAGERLGEIVRIDHAPAADLLVLRRPGDRDVLIPFVRAIVPEVDLAGGRVVVDP 173
>gi|320161004|ref|YP_004174228.1| putative 16S rRNA-processing protein RimM [Anaerolinea thermophila
UNI-1]
gi|319994857|dbj|BAJ63628.1| putative 16S rRNA-processing protein RimM [Anaerolinea thermophila
UNI-1]
Length = 187
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 16 THGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSA 73
HG++GE+ +D + P + +R + + + +RI K+ ++ + F G+D+ +
Sbjct: 35 PHGIHGEMLMDVLTDFPERMKPHRQLFLGDSHEPVRIEKVRWADQSMLIKFEGMDDAEAL 94
Query: 74 SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI 133
R+ +Y L E ++++ L + +G++ G + + GA + +
Sbjct: 95 GRFRNTVVYVLADQLPP--LPEGQYYHHQLLGLRVVSDEGQFLGVLEQILETGANDVYLV 152
Query: 134 KNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+K L+P + +L VNL++ ++++
Sbjct: 153 HTPEDKEILLPAIEEVILSVNLEDGEMVV 181
>gi|227549005|ref|ZP_03979054.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227078915|gb|EEI16878.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
Length = 182
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 14/164 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL-------YSNDNRELRILKMYRKNKRF 60
+L+ + +HG+ GEV ++ ++P R+ + REL I + R
Sbjct: 19 LLIGKVVKSHGIKGEVAVEVLTDDPD--QRFAVGEVLTGRQPGKERELTIKTLRPHQNRL 76
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +F + + A LR ++ +A + +D + +EF++ +L ++ +G+ G+V
Sbjct: 77 LMSFEEVPDRTQADSLRGMQFFAPPLERED---DSEEFYDHELIGLKVI-HEGREVGEVT 132
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GV + ILEI + + L+PF V E++L E + I P
Sbjct: 133 GVMDTPNRKILEI-DYDGREVLVPFVIDFVPEIDLGEQTLTITP 175
>gi|77165722|ref|YP_344247.1| 16S rRNA processing protein RimM [Nitrosococcus oceani ATCC 19707]
gi|254433785|ref|ZP_05047293.1| 16S rRNA processing protein RimM [Nitrosococcus oceani AFC27]
gi|109893026|sp|Q3J8X9|RIMM_NITOC RecName: Full=Ribosome maturation factor rimM
gi|76884036|gb|ABA58717.1| 16S rRNA processing protein RimM [Nitrosococcus oceani ATCC 19707]
gi|207090118|gb|EDZ67389.1| 16S rRNA processing protein RimM [Nitrosococcus oceani AFC27]
Length = 175
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELRILKMYR-KNKRFI 61
+ VL+ I +G+ G + + SY NN +D + L N + R L+ R + K +
Sbjct: 12 RYVLVGRISGLYGVQGWLRVYSYTQPRNNILDYEPWYLQQNGAWQARRLRKGRVQGKGIV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID A+ ++ R + E E++ +DL ++ QG+ GQV
Sbjct: 72 VALEGIDERDVAALWVGCEIAVHRDQLPPPQ--EGEYYWSDLIGLQVITLQGEVLGQVDR 129
Query: 122 VYNFGAGSILEIKNTMEKTFLIPF-TKFAVLEVNLQENKILID 163
+ GA +L ++ E+ L+PF V +V+LQ+ + +D
Sbjct: 130 LLETGANDVLVVRGERER--LLPFLMGMIVKQVDLQQGLLTVD 170
>gi|296268965|ref|YP_003651597.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
gi|296091752|gb|ADG87704.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
Length = 171
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSN--DNRELRILKMYRKNKRFI 61
+++ IG HG+ GEV ++ + P R+ VL ++ D L + + +
Sbjct: 3 LVVGRIGRPHGVRGEVTVEVRTDEP--EARFAPGSVLATDPADAGPLTVERARWHRGILL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F+G+ + ++A LR L D + DEF + +L + G+ G+V
Sbjct: 61 VAFAGVPDRNAAERLRGTLLVIDSADIPPSG-DPDEFHDHELLGLAVVTTDGQRVGEVAD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G +L ++ + +PF K V EV+ +++IDP
Sbjct: 120 VLHHGQ-DLLVVRRPSGEEVYVPFVKAIVPEVDPGAGRLVIDP 161
>gi|108804228|ref|YP_644165.1| 16S rRNA processing protein RimM [Rubrobacter xylanophilus DSM
9941]
gi|122381804|sp|Q1AW75|RIMM_RUBXD RecName: Full=Ribosome maturation factor rimM
gi|108765471|gb|ABG04353.1| 16S rRNA processing protein RimM [Rubrobacter xylanophilus DSM
9941]
Length = 163
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M +L V++ TI HG+ G V + A L + R RIL+ R K F
Sbjct: 1 MGELADPVVIGTITAPHGVRGTVRVRP-AGEGRHLREGLSPLVGGRRRRILRARRTPKGF 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + A+ELR L R + + EEDEF+ DL +E D +G G+V
Sbjct: 60 LVDLEGVPDRFRAAELRGEDLLLDRSEL--DAPEEDEFYVADLVGLEAVDERGGALGEVI 117
Query: 121 GVYNFGAGSILEIKNTMEKTFL-IPFTKFAVLEVNLQENKILIDP 164
+ A +L ++ E L +PFT+ V EV+ + + ++ P
Sbjct: 118 ETFPTPAHEVLVVRG--EGGLLYVPFTREHVPEVDPRAGRAVVRP 160
>gi|145593858|ref|YP_001158155.1| 16S rRNA-processing protein RimM [Salinispora tropica CNB-440]
gi|209573594|sp|A4X4H7|RIMM_SALTO RecName: Full=Ribosome maturation factor rimM
gi|145303195|gb|ABP53777.1| 16S rRNA processing protein RimM [Salinispora tropica CNB-440]
Length = 180
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 23/177 (12%)
Query: 7 LVLMATIGTTHGLNGEVYID-------------------SYANNPIDLNRYVLYSNDNRE 47
++++ IG HG+ GEV ++ AN P Y + E
Sbjct: 1 MLVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVE 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + + + TF G+ + + A LR + R D + +EF + L +
Sbjct: 61 A---ARWHQGRVLLVTFEGVLDRNVAEALRGTLVGVDRADVA-PPTDPEEFHDHQLVGLA 116
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ G++ + + A +L ++ + LIPF + V E++L ++++DP
Sbjct: 117 VVTSAGERLGEIARIDHAPAADLLVLRRPGRRDVLIPFVQAIVPEIDLAGGRVVVDP 173
>gi|169827101|ref|YP_001697259.1| 16S rRNA-processing protein [Lysinibacillus sphaericus C3-41]
gi|209573567|sp|B1HQI2|RIMM_LYSSC RecName: Full=Ribosome maturation factor rimM
gi|168991589|gb|ACA39129.1| Probable 16S rRNA-processing protein [Lysinibacillus sphaericus
C3-41]
Length = 171
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR--ILKMYRKNKRFIA- 62
+ I THG+ GEV I S + + N+ + D+++ ++ R++K FI
Sbjct: 6 VGRIVNTHGIRGEVRILSTTDFEKERFAVGNKLAAFKKDDKKPTGVTIQSVRRHKNFILL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G++NI+ ++ L + D+ LEE+EFF ++ +G+ G V +
Sbjct: 66 TFEGMNNINLVEPFKEGLLKVTKDQMTDDLLEENEFFFHEIIGCTVVSEEGETIGVVNDI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + +K + +K IP+ + V ++++ E KI+I
Sbjct: 126 LQTGANDVWVVKGS-KKEHYIPYIEDIVKDIDVDEKKIVI 164
>gi|59711157|ref|YP_203933.1| 16S rRNA-processing protein [Vibrio fischeri ES114]
gi|75354502|sp|Q5E7F1|RIMM_VIBF1 RecName: Full=Ribosome maturation factor rimM
gi|59479258|gb|AAW85045.1| 16S rRNA processing protein [Vibrio fischeri ES114]
Length = 175
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKN 57
M K D+++++ G ++G+ G + + S+ + P D +++ ++ ++++
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + G+D A +L++ K EL EDEF+ +L ME +G G
Sbjct: 61 KGLVCKLKGLDVREEAQTYTNLEIAVKADALP--ELSEDEFYWRELFGMEVVTTKGYALG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
V ++ G+ +L +K ++ F LIPF V++ ++ + +I +D
Sbjct: 119 VVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVD 170
>gi|78065656|ref|YP_368425.1| 16S rRNA-processing protein [Burkholderia sp. 383]
gi|109893004|sp|Q39ID5|RIMM_BURS3 RecName: Full=Ribosome maturation factor rimM
gi|77966401|gb|ABB07781.1| 16S rRNA processing protein RimM [Burkholderia sp. 383]
Length = 225
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNR-ELRILKMYRKN 57
D V + + +GL G V + ++A+ + + L R +RI++ +
Sbjct: 49 DDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLKARHWWLERGAERLSVRIMQSKAHS 108
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G+ + +A +R +++ +R+DF L DEF+ DL ++ + Q G
Sbjct: 109 DTVVAQPAGVSDRDAAFAMRGFRVFVRREDFP--ALAADEFYWVDLIGLDVVNEQSVALG 166
Query: 118 QVCGVYNFGAGSILEI------KNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+V G+ + G SI+ + K+ T LIPF V V+ +I++D
Sbjct: 167 KVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|228992570|ref|ZP_04152497.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
gi|228767204|gb|EEM15840.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
Length = 188
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRI-LKMY 54
M+ + K + I THG+ GE+ + S + P + Y+ + L + + +
Sbjct: 15 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASH 74
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G +N+ +L+ + + EL E E++ ++ + +G
Sbjct: 75 RQHKTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQLG--ELAEGEYYYHEIIGCKVVTEEG 132
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 133 EDLGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 187
>gi|167747200|ref|ZP_02419327.1| hypothetical protein ANACAC_01914 [Anaerostipes caccae DSM 14662]
gi|317473599|ref|ZP_07932888.1| 16S rRNA processing protein RimM [Anaerostipes sp. 3_2_56FAA]
gi|167654160|gb|EDR98289.1| hypothetical protein ANACAC_01914 [Anaerostipes caccae DSM 14662]
gi|316898889|gb|EFV20914.1| 16S rRNA processing protein RimM [Anaerostipes sp. 3_2_56FAA]
Length = 170
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKM----YRK 56
++ ++ + I +THG+ GEV + ++ DL +L + RE+++L + + K
Sbjct: 1 MEDILQVGAIASTHGVRGEVKVYPMTDDVERFKDLKEVLL--DTGREMKLLHVKSCKFFK 58
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N+ I F DNI+ + + L+ R++ +LEE+EFF D+ + + GK
Sbjct: 59 NQP-ILKFEEFDNINDIEQYKRCGLFVTRENAV--KLEENEFFIADIIGFDVYRETGKKL 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G + V GA + +K K L+P + + +V+L+E +I
Sbjct: 116 GILDDVLQTGANDVYVVKMDDGKEVLLPAIRDCIKKVSLEEKRI 159
>gi|111023496|ref|YP_706468.1| 16S rRNA-processing protein [Rhodococcus jostii RHA1]
gi|122955113|sp|Q0S2C6|RIMM_RHOSR RecName: Full=Ribosome maturation factor rimM
gi|110823026|gb|ABG98310.1| 16S rRNA processing protein [Rhodococcus jostii RHA1]
Length = 183
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRI----LKMYRKNK- 58
+++ + +HG+ GE+ ++ + P D R+ VL + RE + ++ R +
Sbjct: 3 LVVGRVAKSHGIKGEIVVEVRTDEPED--RFAVGAVLRGHKPREQTVSTYTVEAARDHSG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + G+ + +A LR + + + + DEF++ +LE + G G
Sbjct: 61 RLLLRLEGVSDRTAADALRGTLFVIDSAELEPSD-DPDEFYDHELEGLSVRLADGTEVGT 119
Query: 119 VCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILIDP 164
V V + AG +L I+ +++ L+PF V V++ + LIDP
Sbjct: 120 VIEVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDP 167
>gi|166031987|ref|ZP_02234816.1| hypothetical protein DORFOR_01689 [Dorea formicigenerans ATCC
27755]
gi|166028440|gb|EDR47197.1| hypothetical protein DORFOR_01689 [Dorea formicigenerans ATCC
27755]
Length = 168
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
+++L+ + I HG+ GEV + ++P+ L + +L + + E+ +K +++
Sbjct: 1 MEQLLQVGVITQPHGVRGEVKVFPTTDDPVRFKKLKKVILDTGKEKLDLEVEHVKFFKQ- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F DNI+ + L R++ LEEDE+F D+ M+ G +G
Sbjct: 60 -FVIVKFKEFDNINDIERYKRCPLLVTRENAV--PLEEDEYFVADMIGMKVITEDGTEFG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ V GA + I + L+P K VL V+++ I +
Sbjct: 117 TLSDVMETGANDVYVIDSKEHGEVLMPAIKECVLNVDMESGIITV 161
>gi|307244387|ref|ZP_07526498.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
gi|306492206|gb|EFM64248.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
Length = 172
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRIL---KMYRKNKRFIA 62
+ I TT GL GE+ I + + ++R+ + ++RE + L + N +
Sbjct: 10 LGKIVTTRGLKGEIKIYPHTDK---IDRFKDLEYFFIGNDREKKYLVERAVTASNNSIVV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G D I S L ++ R+ +L+EDEFF D+ M+ +G+ G++ V
Sbjct: 67 KLKGYDTIESVQALIGKFIFVDRE--MSYQLDEDEFFIADMIGMDVETIEGQKIGKLVDV 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A + +K K +LIP T V +++ + + I PI L+
Sbjct: 125 LQYAANDVYVVKGEDSKEYLIPATYEIVPDIDTENRLMKIKPIPGLLD 172
>gi|282861373|ref|ZP_06270438.1| 16S rRNA processing protein RimM [Streptomyces sp. ACTE]
gi|282564031|gb|EFB69568.1| 16S rRNA processing protein RimM [Streptomyces sp. ACTE]
Length = 207
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D E L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPAEKGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + + A LR++ L A+ + E +E+EF++ L +++ G G++ +
Sbjct: 63 FENVRDRTGAEALRNILLIAEVDPAQLPE-DEEEFYDHQLIDLDVVLADGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVITP 162
>gi|41409073|ref|NP_961909.1| 16S rRNA-processing protein [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|59798798|sp|Q73VN8|RIMM_MYCPA RecName: Full=Ribosome maturation factor rimM
gi|41397432|gb|AAS05292.1| RimM [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 175
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 11/159 (6%)
Query: 16 THGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
HG++GE+ ++ ++P L R I R + +G+
Sbjct: 11 AHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVT 70
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + D + E D +++ LE ++ G+ G V V + AG
Sbjct: 71 DRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGRRVGAVAEVLHTAAG 129
Query: 129 SILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDP 164
+L +++ + + L+PF V V+L + I IDP
Sbjct: 130 ELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDP 168
>gi|71281652|ref|YP_270723.1| 16S rRNA-processing protein RimM [Colwellia psychrerythraea 34H]
gi|109893008|sp|Q47WU9|RIMM_COLP3 RecName: Full=Ribosome maturation factor rimM
gi|71147392|gb|AAZ27865.1| 16S rRNA processing protein RimM [Colwellia psychrerythraea 34H]
Length = 176
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
+K +++ +G +G+ G + I S+ + + Y +S N+ + + I + NK
Sbjct: 5 EKKIILGKVGAVYGIKGWLKIHSFTDETEAILDYFPWSLKLGNNTQTVEITDWRKHNKVL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I +GID+ A L ++ EL ED+F+ DL M +G G V
Sbjct: 65 IVKVAGIDDRDEAQALVGSEILTNEAALP--ELSEDDFYWRDLIGMSVVTNKGYDLGVVT 122
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ GA +L +K ++ F LIP+ V+E V+++ +I +D
Sbjct: 123 DMMETGANDVLVVKANLKDGFSKKERLIPYLFEQVIESVSIENKQICVD 171
>gi|269795666|ref|YP_003315121.1| 16S rRNA processing protein RimM [Sanguibacter keddieii DSM 10542]
gi|269097851|gb|ACZ22287.1| 16S rRNA processing protein RimM [Sanguibacter keddieii DSM 10542]
Length = 214
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ATIG HGL GEV +D ++P D L ++ +N R+ F+
Sbjct: 5 VATIGRAHGLRGEVALDLRTDDPEARLADGQVLRTVPASAGPLTVVSTRIQNGRWHVAFA 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ + +A + R ++L D EED ++ +L + + G G+V G+ +
Sbjct: 65 ELGDRTAAEQARGIELVVD----VDASDEEDAWYPHELAGLRAELQDGTVVGEVVGLDHL 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +L ++ T L+PF + V V++ ++++DP
Sbjct: 121 PAYDMLVVRETDGTRTLVPFVRVMVPVVDVAGGRVVLDP 159
>gi|300780919|ref|ZP_07090773.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
gi|300532626|gb|EFK53687.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
Length = 169
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 16 THGLNGEVYIDSYANNPIDL---NRYVLY---SNDNRELRILKMYRKNKRFIATFSGIDN 69
+HG+ GEV ++ A++ D+ VL+ + R+L I + KR + TF + +
Sbjct: 11 SHGVRGEVVVEPLADDE-DIFFAEGEVLHGRQTGKERDLTIKSVRPHQKRLLVTFEEVAD 69
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--DRQGKYWGQVCGVYNFGA 127
+A LR ++ +A+ + +DE + DE+++ +L ++ G + G+V GV
Sbjct: 70 RTAADSLRGMQFFAEPLE-RDE--DSDEYYDHELIGLKVLLDHAGGTHIGEVTGVMTMPN 126
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+LE+ + K L+PF V E++L E ++I P
Sbjct: 127 RKLLEV-DYHGKEVLVPFVMDIVPEIDLDEGYLVITP 162
>gi|194364932|ref|YP_002027542.1| 16S rRNA-processing protein RimM [Stenotrophomonas maltophilia
R551-3]
gi|238693461|sp|B4SPH2|RIMM_STRM5 RecName: Full=Ribosome maturation factor rimM
gi|194347736|gb|ACF50859.1| 16S rRNA processing protein RimM [Stenotrophomonas maltophilia
R551-3]
Length = 170
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYRKNKR 59
++ +L+ I G+ GE+ ++S+ + RY +L S + +E L + K
Sbjct: 5 ERRILLGRIVGAFGVRGEIKLESWTEPRSAIFRYQPWILRSPNGQESTLEGARGRDSGKH 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A F GI++ + + ++Y R DE++ DLE ++ +G GQV
Sbjct: 65 LVARFPGIEDRDTVEAMHGTEVYVARSALPPPN--ADEYYWVDLEGLDVKTTEGVALGQV 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFT--KFAVLEVNLQENKILID 163
+++ GA ++ ++ E+ +IPF +F V V+ + N +++D
Sbjct: 123 SHLFSTGANDVVVVRGDRER--MIPFVLPEF-VKSVDFEANLVVVD 165
>gi|85712461|ref|ZP_01043510.1| RimM [Idiomarina baltica OS145]
gi|85693739|gb|EAQ31688.1| RimM [Idiomarina baltica OS145]
Length = 181
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE-----LRILKMYRKNKR 59
+++ IG +G+ G + I S+ NP D+ + L N R+ + +++ R N
Sbjct: 9 LVVGHIGAVYGVKGWLKIQSFTENPEDIFDYTPWTLQGNAARQTTEEVINVVQWRRHNNG 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA GI++ A+ L + + K EL +DEF+ DL + ++QG G V
Sbjct: 69 LIAQLEGINDRELAATKTGLSICINAE--KLPELADDEFYWRDLIGLRVVNKQGYDMGVV 126
Query: 120 CGVYNFGAGSILEIKNTMEKTF-----LIPFTKFA-VLEVNLQENKILID 163
+ A +L + F LIPF + VL+V+ ++ +I +D
Sbjct: 127 EQIMPTAANDVLVVTANSNDAFGKSERLIPFVQSQYVLDVDNEKQQIQVD 176
>gi|225028003|ref|ZP_03717195.1| hypothetical protein EUBHAL_02272 [Eubacterium hallii DSM 3353]
gi|224954717|gb|EEG35926.1| hypothetical protein EUBHAL_02272 [Eubacterium hallii DSM 3353]
Length = 169
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKR 59
++ L + I THGL GEV + ++ +DL+ ++ + E ++ +
Sbjct: 1 MEDLFQVGIITGTHGLKGEVKVFPTTDDKERFLDLDTVLIDTGKELIEKKVQYCKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F G+D+I+ + + L R++ LEEDE++ DL + D G G++
Sbjct: 61 VFVKFEGLDDINDVEKYKRCPLKVTRENAV--PLEEDEYYVADLLGLTIVDESGVTIGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + E+K L+P K +L+V+++E IL+
Sbjct: 119 IDVIETGANDVYEVKTPDGGHVLLPAIKDCILDVDMEEKIILV 161
>gi|225851485|ref|YP_002731719.1| 16S rRNA processing protein RimM [Persephonella marina EX-H1]
gi|225645188|gb|ACO03374.1| 16S rRNA processing protein RimM [Persephonella marina EX-H1]
Length = 169
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 9/164 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN---KR 59
K + V+ I THG+ G++ I+ + N DL V+Y D +E + +Y ++ K+
Sbjct: 4 KREDFVIAGKIHGTHGVRGDLKIEIFPPN-FDLPD-VIYIKD-KEGNFVPLYIEHFSKKK 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G D+I A +++ Y + K EL++D+F+ L +M+ GK G++
Sbjct: 61 NLIRFKGFDDIDKAKKIKHRYFYVESH--KLPELDKDQFYEYQLIDMDVI-FNGKVIGKI 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + L IK +K +PF K V EV+ + K+++D
Sbjct: 118 IKVDDRLPTAYLIIKCVDDKVRHLPFIKEFVKEVDTEGRKVVVD 161
>gi|197303268|ref|ZP_03168309.1| hypothetical protein RUMLAC_01991 [Ruminococcus lactaris ATCC
29176]
gi|197297694|gb|EDY32253.1| hypothetical protein RUMLAC_01991 [Ruminococcus lactaris ATCC
29176]
Length = 178
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRI-LKMYRKNKRF 60
+++ + + I +THGL GEV + ++ + V+ +L + ++ R K+F
Sbjct: 10 MEQFLQVGVISSTHGLRGEVKVFPTTDDAARFQTLKEVILDTGKEKLDLEIQSVRFFKQF 69
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQ 118
I F GID+I+ + + L+ R++ ELEEDE++ DL M+ + D + +G
Sbjct: 70 VIVKFKGIDDINDIEKYKGKSLFVARENAV--ELEEDEYYIGDLIGMDVYTDESEERFGV 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ V GA + +++ L+P +LEV+ +E K+ +
Sbjct: 128 LKDVMETGANEVYIVQSERYGEVLLPAIHECILEVDPEEKKMTV 171
>gi|74318392|ref|YP_316132.1| 16S rRNA processing protein RimM [Thiobacillus denitrificans ATCC
25259]
gi|109893066|sp|Q3SGC3|RIMM_THIDA RecName: Full=Ribosome maturation factor rimM
gi|74057887|gb|AAZ98327.1| 16S rRNA processing protein RimM [Thiobacillus denitrificans ATCC
25259]
Length = 189
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 8/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRK 56
+ + + V+M + G+ G V + ++ +P +D + + + + + + +
Sbjct: 22 LAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQDH 81
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A GID+ +A LR ++ + E E+EF+ +DL + +R+G
Sbjct: 82 GKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPE--ENEFYWSDLIGLTVMNREGVEL 139
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L +K E LIPF V +V+L + +D
Sbjct: 140 GKVDSLMESGAHDLLVVKGRREH--LIPFVAAFVGKVDLAGGTVEVD 184
>gi|269955969|ref|YP_003325758.1| 16S rRNA processing protein RimM [Xylanimonas cellulosilytica DSM
15894]
gi|269304650|gb|ACZ30200.1| 16S rRNA processing protein RimM [Xylanimonas cellulosilytica DSM
15894]
Length = 181
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A I H L GEV +D ++P L + + D E L +L R++
Sbjct: 3 LVVARISKAHSLRGEVALDLRTDDPESRLPVGAVLATDPPEAGPLTVLSRRLHQGRWLVK 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ + + +A LR ++L + D DEE D ++ +L+ + G G+V +
Sbjct: 63 FAEVADRTAAEALRGVELVVE-ADASDEE---DAWYPHELQGLRVELLDGTVVGEVVTLE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ A L I+ T LIPF V V++ ++++DP
Sbjct: 119 HLPAHDALLIEETGGARTLIPFVTAIVPVVDVAGGRVVLDP 159
>gi|302670921|ref|YP_003830881.1| 16S rRNA processing protein RimM [Butyrivibrio proteoclasticus
B316]
gi|302395394|gb|ADL34299.1| 16S rRNA processing protein RimM [Butyrivibrio proteoclasticus
B316]
Length = 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 10/160 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATF 64
+ I +THGL GEV + +P L + L++ E+ + ++ R K+F I F
Sbjct: 7 VGVIASTHGLQGEVNVFPTTEDPNRFKKLKKVTLHTQRGEEIELDVQSARFFKKFVIVKF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+NI+ + R +L +R+D +LE E++ DL ++ D G G V +
Sbjct: 67 KQYNNINDVEKFRGCELTIERKDAI--KLEPGEYYCADLMGLDIVDEDGNKLGVVTDIIQ 124
Query: 125 FGAGSILEI--KNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + E+ + + EK + IP K V +++ KI I
Sbjct: 125 TGANDVYEMAREGSDEKVY-IPVIKDCVRNIDVNGGKITI 163
>gi|320008293|gb|ADW03143.1| 16S rRNA processing protein RimM [Streptomyces flavogriseus ATCC
33331]
Length = 210
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAGTGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEED--EFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ + +A LR+ L A+ EL +D EF++ L +++ G G++
Sbjct: 63 FEGVRDRSAAEALRNTLLIAE---VDPAELPDDPEEFYDHQLMDLDVVLGDGTEIGRITE 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + + ++ +IPF + V E++L+E +I+I P
Sbjct: 120 ISHLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRIVIAP 162
>gi|294664961|ref|ZP_06730273.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605268|gb|EFF48607.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRTPSGQESGVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|118463723|ref|YP_882934.1| 16S rRNA-processing protein RimM [Mycobacterium avium 104]
gi|166226451|sp|A0QJ46|RIMM_MYCA1 RecName: Full=Ribosome maturation factor rimM
gi|118165010|gb|ABK65907.1| 16S rRNA processing protein RimM [Mycobacterium avium 104]
Length = 175
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 11/159 (6%)
Query: 16 THGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
HG++GE+ ++ ++P L R I R + +G+
Sbjct: 11 AHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVT 70
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR + D + E D +++ LE ++ G+ G V V + AG
Sbjct: 71 DRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGQRVGAVAEVLHTAAG 129
Query: 129 SILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDP 164
+L +++ + + L+PF V V+L + I IDP
Sbjct: 130 ELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDP 168
>gi|256831067|ref|YP_003159795.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
gi|256580243|gb|ACU91379.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
Length = 182
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 3 KLD--KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNR-YVLYSNDNRELRILKMYRK 56
KLD KLV + + HGL GE+ I+ YA++P L R Y+ + +L+ +R
Sbjct: 5 KLDPVKLVELGRVQKPHGLRGELCIEPYADSPFIFEGLTRVYLRLPGKKPKPCVLEGWRA 64
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ R + T A R + A+ +D L+EDEF DL + G
Sbjct: 65 HQGRALITVDRSQGRDQAEAWRGADVLARERDLP--PLDEDEFRPEDLLGLPVMHVNGSR 122
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G + + + + I + ++P +L+++L+ IL+DP
Sbjct: 123 IGVLEDIRDVAGQELWFILDDAGNEIMLPAVDEFILDIDLEAGVILVDP 171
>gi|46206221|ref|ZP_00047565.2| COG0806: RimM protein, required for 16S rRNA processing
[Magnetospirillum magnetotacticum MS-1]
Length = 179
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + SY P+ + Y L ++D R L + R I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSYTGQPLAIAGYGPLRASDGRTLELADARPAPGRSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL 103
G+D+ A L + L R+ E +EDEFF DL
Sbjct: 104 VRVKGVDDRSGAEALNRVTLAIPRERLGTAE-DEDEFFLADL 144
>gi|148285006|ref|YP_001249096.1| 16S rRNA-processing protein [Orientia tsutsugamushi str. Boryong]
gi|166226461|sp|A5CF62|RIMM_ORITB RecName: Full=Ribosome maturation factor rimM
gi|146740445|emb|CAM80941.1| 16S rRNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 164
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
KL+ + I + +G+ G+V I S+ + ++ Y L ++I +K+ I
Sbjct: 5 SKLIPIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKIICNI 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I +A +L KLY + + +L + E++ +L ++ + +G+ G++ + N
Sbjct: 65 DQIVTRTAAEQLTRTKLYIYKHEL--PQLPDSEYYVANLNGIKVKNLEGEIIGKINNICN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFT 146
+ AG I+E+ K + PFT
Sbjct: 123 YNAGDIIEVVYNDGKKIMYPFT 144
>gi|238916981|ref|YP_002930498.1| 16S rRNA processing protein RimM [Eubacterium eligens ATCC 27750]
gi|238872341|gb|ACR72051.1| 16S rRNA processing protein RimM [Eubacterium eligens ATCC 27750]
Length = 172
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF--- 60
++ ++ + I +THG+ GEV + ++P+ + D + ++ K F
Sbjct: 1 MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F D+I+ + L R+D +LE E+F DL ++ +GK+ G +
Sbjct: 61 VILKFKEFDDINDIEKYTKCDLLVSREDAV--KLEPGEYFICDLIGLDVITDEGKHLGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA ++ E++ +++LIP +L+ +L + I +
Sbjct: 119 KDVLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTITV 161
>gi|228998618|ref|ZP_04158205.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
gi|228761086|gb|EEM10045.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
Length = 188
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRI-LKMY 54
M+ + K + I THG+ GE+ + S + P + Y+ + L + + +
Sbjct: 15 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASH 74
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G +N+ +L+ + + EL E E++ ++ + +G
Sbjct: 75 RQHKTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQLG--ELAEGEYYYHEIIGCKVVTEEG 132
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 133 EDLGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNI-ENKLVTIHVMEGL 187
>gi|197335041|ref|YP_002155308.1| 16S rRNA processing protein RimM [Vibrio fischeri MJ11]
gi|238690257|sp|B5FAE6|RIMM_VIBFM RecName: Full=Ribosome maturation factor rimM
gi|197316531|gb|ACH65978.1| 16S rRNA processing protein RimM [Vibrio fischeri MJ11]
Length = 175
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKN 57
M K D+++++ G ++G+ G + + S+ + P D +++ ++ ++++
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + G+D A +L++ K EL EDEF+ +L ME +G G
Sbjct: 61 KGLVCKLKGLDVREEAQTYTNLEIAVKADVLP--ELSEDEFYWRELFGMEVVTTKGYALG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
V ++ G+ +L +K ++ F LIPF V++ ++ + +I +D
Sbjct: 119 VVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVD 170
>gi|303241506|ref|ZP_07328007.1| 16S rRNA processing protein RimM [Acetivibrio cellulolyticus CD2]
gi|302590924|gb|EFL60671.1| 16S rRNA processing protein RimM [Acetivibrio cellulolyticus CD2]
Length = 174
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRFIA-T 63
+ + THG+ GE+ + ++P N+ ++N + + + +K F+
Sbjct: 7 IGKVVNTHGVKGEIKVVPLTDDPNRFNKLKSAFIASEISENMQKYNFEGIKFHKNFVLLK 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ + A +L+D + R+D +L E FF DL E +D + G + +
Sbjct: 67 LKGIDDPNEAEKLKDKFIIIDREDAV--KLPEGSFFVCDLINCEVYDEKENKLGVLIDIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ + +++ +K L+P K V EV++++ KI+++
Sbjct: 125 QTGSNDVYVVRDENKKEILVPALKSVVKEVSIEDKKIIVE 164
>gi|15895034|ref|NP_348383.1| 16S rRNA-processing protein RimM [Clostridium acetobutylicum ATCC
824]
gi|21362869|sp|Q97I95|RIMM_CLOAB RecName: Full=Ribosome maturation factor rimM
gi|15024726|gb|AAK79723.1|AE007684_11 RimM protein, required for 16S rRNA processing [Clostridium
acetobutylicum ATCC 824]
gi|325509171|gb|ADZ20807.1| 16S rRNA-processing protein [Clostridium acetobutylicum EA 2018]
Length = 166
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIATFS 65
+ I THG+ GE+ I + D+NR+ +Y DN +++ + ++ + I
Sbjct: 7 IGQIINTHGVRGELKIYPLTD---DINRFDDLDSVYV-DNEIKKVISVKKQPNKLILKLE 62
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID + A + ++ + R+D EL+E ++F D+ FD K G+V V +
Sbjct: 63 GIDTLDEAVKYKNKYIKVLREDAV--ELKEGQYFIKDIIGCNVFDENDKDLGEVYDVIST 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ I+ ++ L+P K VL++ ++ KI+I + L +
Sbjct: 121 KNNDVYCIRKEGQQDILVPALKDIVLKIEIENKKIVIKAVEEWLES 166
>gi|171741403|ref|ZP_02917210.1| hypothetical protein BIFDEN_00486 [Bifidobacterium dentium ATCC
27678]
gi|283455250|ref|YP_003359814.1| 16S rRNA processing protein RimM [Bifidobacterium dentium Bd1]
gi|171277017|gb|EDT44678.1| hypothetical protein BIFDEN_00486 [Bifidobacterium dentium ATCC
27678]
gi|283101884|gb|ADB08990.1| rimM 16S rRNA processing protein [Bifidobacterium dentium Bd1]
Length = 195
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D E +++ R K R+
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPGAVLYTKDGEEEYVVEHSRTFKNRW 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET--------FDRQ 112
I F GIDN S+ LY + D +E L+ DE++ DL +E
Sbjct: 68 IIKFEGIDNRDSSEAANGTVLYGEADD-PEEMLQADEWYPKDLIGLEARLADDNTLGLEP 126
Query: 113 GKYWGQVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
G G+V V A +L+I+ +E + L+PF V +++L+E + +
Sbjct: 127 GMAIGKVVDVIEV-AQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEEGYLTL 185
Query: 163 DP 164
+P
Sbjct: 186 NP 187
>gi|71908678|ref|YP_286265.1| 16S rRNA processing protein RimM [Dechloromonas aromatica RCB]
gi|109893010|sp|Q47BI6|RIMM_DECAR RecName: Full=Ribosome maturation factor rimM
gi|71848299|gb|AAZ47795.1| 16S rRNA processing protein RimM [Dechloromonas aromatica RCB]
Length = 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRFI 61
+V++ + +G+ G +++ + ++P+ ++ RE R+ + +
Sbjct: 6 IVVLGRLADPYGIQGWLWLYPFGDDPLAWAEMPVWWIAREGEPWRECRLKSLKAHGNGVV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + +A ++ + + A R+ E ++EF+ TDL ++ + + G+V G
Sbjct: 66 VLLDGVADRTAAESMKGVLVGAPREALPTTE--KNEFYWTDLIGLDVINTADERIGKVVG 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA S+L + + L+PF VL V + +I ++
Sbjct: 124 LIETGANSVLRVMGDDKVERLLPFVSAVVLAVEKEAGQIRVE 165
>gi|108798935|ref|YP_639132.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MCS]
gi|119868050|ref|YP_938002.1| 16S rRNA-processing protein [Mycobacterium sp. KMS]
gi|126434535|ref|YP_001070226.1| 16S rRNA-processing protein RimM [Mycobacterium sp. JLS]
gi|123178993|sp|Q1BAK8|RIMM_MYCSS RecName: Full=Ribosome maturation factor rimM
gi|166226454|sp|A3PXV8|RIMM_MYCSJ RecName: Full=Ribosome maturation factor rimM
gi|166226455|sp|A1UEF4|RIMM_MYCSK RecName: Full=Ribosome maturation factor rimM
gi|108769354|gb|ABG08076.1| 16S rRNA processing protein RimM [Mycobacterium sp. MCS]
gi|119694139|gb|ABL91212.1| 16S rRNA processing protein RimM [Mycobacterium sp. KMS]
gi|126234335|gb|ABN97735.1| 16S rRNA processing protein RimM [Mycobacterium sp. JLS]
Length = 173
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 8/164 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + HG+ GE+ ++ ++P L R + + R
Sbjct: 3 LVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPRGGAERAFVVESVRPHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A LR D E E DE+++ LE + G G V
Sbjct: 63 LLRLDGVADRTAADALRGTVFLVDSADLPPIE-EPDEYYDHQLEGLLVRTVDGVDVGTVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + AG +L +K L+PF V V+L + + IDP
Sbjct: 122 EVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDP 165
>gi|294626998|ref|ZP_06705588.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598660|gb|EFF42807.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRTPSGQESVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|306823689|ref|ZP_07457064.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|309802986|ref|ZP_07697087.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
gi|304553396|gb|EFM41308.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|308220453|gb|EFO76764.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
Length = 199
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D E +++ R K R+
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPGAVLYTKDGEEEYVVEHSRTFKNRW 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET--------FDRQ 112
I F GIDN S+ LY + D +E L+ DE++ DL +E
Sbjct: 72 IIKFEGIDNRDSSEAANGTVLYGEADD-PEEMLQADEWYPKDLIGLEARLADDNTLGLEP 130
Query: 113 GKYWGQVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILI 162
G G+V V A +L+I+ +E + L+PF V +++L+E + +
Sbjct: 131 GMAIGKVVDVIEV-AQWLLKIRLANPVRDADGVVVENSALVPFVDELVPDIDLEEGYLTL 189
Query: 163 DP 164
+P
Sbjct: 190 NP 191
>gi|289675161|ref|ZP_06496051.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
FF5]
Length = 171
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKI 160
+ G+ ++ +K ++ L+P+T+ VL +++ +
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGGV 171
>gi|75907314|ref|YP_321610.1| 16S rRNA-processing protein RimM [Anabaena variabilis ATCC 29413]
gi|109892999|sp|Q3ME71|RIMM_ANAVT RecName: Full=Probable 16S rRNA-processing protein rimM
gi|75701039|gb|ABA20715.1| 16S rRNA processing protein RimM [Anabaena variabilis ATCC 29413]
Length = 233
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKM---YRKN 57
D+ + + I + GL+GEV + ++ P + R++L I + Y +N
Sbjct: 50 DEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYLEN 109
Query: 58 KR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKY 115
K ++ +G++N + ELR L+ D EL EDE+ DL ME F G
Sbjct: 110 KNLYVLQLAGVENRTQSEELRGCMLFVPASDRP--ELGEDEYHVVDLIGMEVFLQTSGDL 167
Query: 116 WGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V V G +LE+ + KT LIPF K V+L+ +I I P
Sbjct: 168 VGTVVDVIPAGN-DLLEVSLHEPVPSDKKPKTVLIPFVKAIAPVVDLETRRIEITP 222
>gi|227495316|ref|ZP_03925632.1| 16S rRNA processing protein RimM [Actinomyces coleocanis DSM 15436]
gi|226831186|gb|EEH63569.1| 16S rRNA processing protein RimM [Actinomyces coleocanis DSM 15436]
Length = 176
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG H L GEV ++ + + P + ++ L + + R F+
Sbjct: 5 VAEIGAAHALKGEVLLNLHTDVPEERIYPGAQFRTVPAGRGPLTVDTIRVHKGRLAVRFA 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G + ++A LR KL DF + ELEED ++ +L + G G+V +
Sbjct: 65 GHADRNAAEALRSTKLVI---DFDEVELEEDAWYADELIGFKALHVNGTELGEVSDLILG 121
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +LEIK K L+PF + V ++ + +L+DP
Sbjct: 122 DAQDLLEIKYQGRKV-LVPFVEELVPVIDEEAETVLLDP 159
>gi|21242046|ref|NP_641628.1| 16S rRNA-processing protein RimM [Xanthomonas axonopodis pv. citri
str. 306]
gi|24418649|sp|Q8PMY2|RIMM_XANAC RecName: Full=Ribosome maturation factor rimM
gi|21107448|gb|AAM36164.1| 16S rRNA processing protein RimM [Xanthomonas axonopodis pv. citri
str. 306]
Length = 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYRKNKR 59
++ +L+ I G+ GE+ ++S+ + RY ++ S +E + ++ + K
Sbjct: 5 ERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRDQGKN 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA F G+ + + + ++Y R + DE++ DLEE++ +G G V
Sbjct: 65 LIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVKLGTV 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 123 SHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|109897899|ref|YP_661154.1| 16S rRNA processing protein RimM [Pseudoalteromonas atlantica T6c]
gi|123360985|sp|Q15VI8|RIMM_PSEA6 RecName: Full=Ribosome maturation factor rimM
gi|109700180|gb|ABG40100.1| 16S rRNA processing protein RimM [Pseudoalteromonas atlantica T6c]
Length = 176
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
++M IG +G+ G V I SY + + Y + + +E+ + + NK +A
Sbjct: 8 LVMGKIGAPYGVKGWVKITSYTDELDGIFSYTPWLVGQEGNTKEIVVDQWRTHNKGLVAK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A +++L + K Q +L+ DEF+ +L M+ QG G V ++
Sbjct: 68 LVGVETRDDAESIKNLDISIKAQQLP--QLDGDEFYWRELVGMQVVTEQGYNLGVVKELF 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF 145
GA ++ IK ++ F ++P+
Sbjct: 126 ETGANDVMLIKANLKDAFGQKERMVPY 152
>gi|91794104|ref|YP_563755.1| 16S rRNA-processing protein [Shewanella denitrificans OS217]
gi|122968557|sp|Q12KJ4|RIMM_SHEDO RecName: Full=Ribosome maturation factor rimM
gi|91716106|gb|ABE56032.1| 16S rRNA processing protein RimM [Shewanella denitrificans OS217]
Length = 176
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G++HG+ G + I +Y ++ + YV + RE+++ + + K +A
Sbjct: 8 VVLGKLGSSHGIKGWLKITAYTDSVEGIFDYVPWLIKDQGVWREVKVTQWRFQGKAVVAE 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ A L + ++ + K EL++++F++ DL E + G G V +
Sbjct: 68 LEGVTTREQAQMLTNCEIAILPEQMK--ELDDNDFYHRDLIGCEVTNVNGYNLGIVDQIV 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + F +IPF T+ + +V+LQ +I++D
Sbjct: 126 ETGSNDVLLVKANAKDAFGKVERMIPFVTEQFIKQVDLQGKQIVVD 171
>gi|28868681|ref|NP_791300.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969057|ref|ZP_03397196.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|301384048|ref|ZP_07232466.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
Max13]
gi|302058754|ref|ZP_07250295.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
K40]
gi|302131715|ref|ZP_07257705.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|37999587|sp|Q886V1|RIMM_PSESM RecName: Full=Ribosome maturation factor rimM
gi|28851920|gb|AAO54995.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926055|gb|EEB59611.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|331016303|gb|EGH96359.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 179
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|242088857|ref|XP_002440261.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
gi|241945546|gb|EES18691.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
Length = 663
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYV-LYSNDNRELRILKMYRK-- 56
++LV + + HG+ G+V + + P R++ + +++R ++ R
Sbjct: 94 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 153
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K +I +F GIDN+ A ++ + K D E+E+DEF++ DL M +
Sbjct: 154 HTGKKSWIVSFDGIDNLDEARQIVGSAVLVKAGD--RPEIEDDEFYSLDLVGMRVIVKDT 211
Query: 113 GKYWGQVCGVYNFGAGSILEIK-NTMEKTFL-----------------IPFTKFAVLEVN 154
GK G V ++NFG G +L++ + E T + IPF + V +V+
Sbjct: 212 GKVVGTVGQIFNFGGGDLLQVMIGSAEGTAVDPDSENQDSISSREHVWIPFAEDIVPDVD 271
Query: 155 LQENKILIDP 164
+ ++ I P
Sbjct: 272 MASREMWITP 281
>gi|119717481|ref|YP_924446.1| 16S rRNA processing protein RimM [Nocardioides sp. JS614]
gi|171704654|sp|A1SLS4|RIMM_NOCSJ RecName: Full=Ribosome maturation factor rimM
gi|119538142|gb|ABL82759.1| 16S rRNA processing protein RimM [Nocardioides sp. JS614]
Length = 184
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSND--NRELRILKMYRKNKRF- 60
VL+ IG HG+ GE+ +D + P R+ VL + R+ ++ ++ R+
Sbjct: 6 VLVGRIGKPHGIRGELTLDVRTDEP--ERRFAPGAVLRAEPPAGSASRLRRVTVRSARWH 63
Query: 61 ----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F + + +A R + L+A + DE+++ L + +D G
Sbjct: 64 QSTLLVAFEEVADRTAAEAARGILLHAT-VPADAAPDDPDEYYDHQLVGLAAYDVSGAAL 122
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V G+ + GA +L ++ + L+PF K V EV+L +++I
Sbjct: 123 GSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVDLAGRRVVI 168
>gi|83814853|ref|YP_445748.1| 16S rRNA processing protein RimM [Salinibacter ruber DSM 13855]
gi|294507643|ref|YP_003571701.1| 16S rRNA processing protein rimM [Salinibacter ruber M8]
gi|109893047|sp|Q2S233|RIMM_SALRD RecName: Full=Ribosome maturation factor rimM
gi|83756247|gb|ABC44360.1| 16S rRNA processing protein RimM [Salinibacter ruber DSM 13855]
gi|294343971|emb|CBH24749.1| 16S rRNA processing protein rimM [Salinibacter ruber M8]
Length = 198
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKM------YRKN 57
LV + I HGL+GE+ ID A + D R+ + R+++ Y+K
Sbjct: 27 LVKVGFIFRPHGLDGELKIDPSATD--DPARFEVLPTVFVGPHPRRVVRHDIASVRYQKT 84
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEE---LEEDEFFNTDLEEMETFDRQGK 114
KR I G+D I + D + AK F E LE+DE F DL +G
Sbjct: 85 KRGITVILGLDGI---VDRDDAEAVAKMDVFATEAALGLEDDELFADDLVGWTVVTEEGA 141
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G V A + ++ + +IP ++E++ + +I++ PI
Sbjct: 142 VQGTVADFMEMPAQDLFVVRTPEDTEAMIPAIDDFIIEIDEEAERIVVRPI 192
>gi|239623997|ref|ZP_04667028.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47_FAA]
gi|239522028|gb|EEQ61894.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47FAA]
Length = 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
++ ++ + I +THG+ GEV + ++P L +L + E++ +K ++
Sbjct: 1 MEDMLRVGVIASTHGVRGEVKVFPTTDDPSRFKQLKEVILDTGKEHLPLEIQQVKFFKN- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F G DNI+ + + L R + ELE DE+F TDL +E G+ G
Sbjct: 60 -MVILKFKGYDNINDIEKYKSKDLLIPRD--QAVELEPDEYFITDLIGLEVRTEDGEILG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ V GA + ++ K L+P +L V+L++
Sbjct: 117 TMKDVLETGANDVYVVQMKDGKELLLPAIGDCILNVDLEQG 157
>gi|242308900|ref|ZP_04808055.1| 16S rRNA processing protein RimM [Helicobacter pullorum MIT
98-5489]
gi|239524564|gb|EEQ64430.1| 16S rRNA processing protein RimM [Helicobacter pullorum MIT
98-5489]
Length = 183
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
V +A IG G+ GEV + + P L Y + +L I ++N R F+ I
Sbjct: 12 VSVAKIGRPVGVKGEVLLHLLTDFPEVLKVGDTYFSQIGDLTIQSYNKENSRI--KFTQI 69
Query: 68 DNIHSASELRDLKLYAKRQDFKDE--ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
++ A + +L LY QDF E +L++DEFF ++ + + G+ G+VC + F
Sbjct: 70 NSREIAKQFTNLILYT-TQDFTKEHCKLKKDEFFWFEIIGSKILEL-GEILGEVCEIERF 127
Query: 126 GAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
G L IK + + K+FL+P+ K + EV++ +I
Sbjct: 128 GQKDFLSIKTSHDLQAKGFPKSFLVPYEKRYIKEVDIHTTPKII 171
>gi|70728477|ref|YP_258226.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens Pf-5]
gi|109893033|sp|Q4KHQ7|RIMM_PSEF5 RecName: Full=Ribosome maturation factor rimM
gi|68342776|gb|AAY90382.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Pf-5]
Length = 178
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
D L+++ I + HG+ GEV + S+ + N +D + L + + L R N +F
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIKNLLDYKTWTLKREGSVKQVELVSGRGNDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ L+ ++ D G+ G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRSLFP--ELTDGEYYWYQLQGLKVIDGLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|27364980|ref|NP_760508.1| 16S rRNA-processing protein RimM [Vibrio vulnificus CMCP6]
gi|37680971|ref|NP_935580.1| 16S rRNA-processing protein [Vibrio vulnificus YJ016]
gi|320155364|ref|YP_004187743.1| 16S rRNA processing protein RimM [Vibrio vulnificus MO6-24/O]
gi|29611849|sp|Q8DC32|RIMM_VIBVU RecName: Full=Ribosome maturation factor rimM
gi|46397679|sp|Q7MHT2|RIMM_VIBVY RecName: Full=Ribosome maturation factor rimM
gi|27361126|gb|AAO10035.1| 16S rRNA processing protein RimM [Vibrio vulnificus CMCP6]
gi|37199721|dbj|BAC95551.1| RimM protein [Vibrio vulnificus YJ016]
gi|319930676|gb|ADV85540.1| 16S rRNA processing protein RimM [Vibrio vulnificus MO6-24/O]
Length = 182
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRF 60
D+ +++ G+T+G+ G + + SY +N L Y + + + E ++ R NK
Sbjct: 11 DERIVVGKFGSTYGIRGWLKVFSYTDNAESLFDYSPWYVNQKGEWVEFKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A L +L++ EL EDEF+ +L M+ G G V
Sbjct: 71 VAKLEGLDVREDAHLLTNLEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTNGYDLGVVT 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILID 163
+ G+ +L +K ++ F LIPF + V ++V+ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVD 177
>gi|307730594|ref|YP_003907818.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1003]
gi|307585129|gb|ADN58527.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1003]
Length = 252
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R L+ +
Sbjct: 79 VEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGRERHSAPSLQARTHSDSV 138
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A GI + +A LR ++Y R +F L+ DEF+ DL ++ + G+ G+V
Sbjct: 139 VAHLGGIADRDAALALRGSRVYVSRSEF--PALQADEFYWVDLLGLDVVNLAGENLGKVA 196
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ + GA S+L ++ + LIPF V V+ +I +D
Sbjct: 197 GMIDNGAHSVLRVEYPAADKSGKPVTAERLIPFVGVFVKTVDQAAKQITVD 247
>gi|51892607|ref|YP_075298.1| 16S rRNA processing protein [Symbiobacterium thermophilum IAM
14863]
gi|59798669|sp|Q67PD9|RIMM_SYMTH RecName: Full=Ribosome maturation factor rimM
gi|51856296|dbj|BAD40454.1| 16S rRNA processing protein [Symbiobacterium thermophilum IAM
14863]
Length = 174
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
L+ + + HG+ G V + + P + L R ++ D + + KN I
Sbjct: 9 LIRIGQVTAPHGVRGAVRVYPTTDFPERFVTLKRVMIDGPDRAVGARFRGFVKNL-VILE 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV- 122
GI + + A LR L R++ L E +++ D+ +E D G+ G+V V
Sbjct: 68 LEGITDRNQAERLRGADLLVPREEV--HPLPEGYYYDFDIIGIEVVDPDGRQLGRVVEVD 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + ++ K +L+P + V E++L+ +++IDPI L +
Sbjct: 126 HTSPVHDLYVVETAPGKRYLVPAVRRFVKEIDLETGRMVIDPIPGLLED 174
>gi|168032186|ref|XP_001768600.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680099|gb|EDQ66538.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR--------- 55
D V + + THG+ GE+ I S + P + R+ + R ++ ++M +
Sbjct: 1 DDFVEIGIVAETHGVYGELRIRSSTDFPEE--RF--ETPGTRWIKKMRMGKPSITEVELI 56
Query: 56 -------KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
K ++ G+D + ASE + + R D + LEEDE + DL M+
Sbjct: 57 EGRETIGKQTSWLVRLKGVDTLEKASEFQGATMLI-RADERPVSLEEDEDYIPDLLGMDV 115
Query: 109 FDRQGK-YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKILI 162
++ K G + V+N GA +L ++ T + IPF K V V++ N++ I
Sbjct: 116 VIQETKETIGTIVDVHNSGASDLLRVQLTKPIRGKDVRIWIPFVKEIVPVVDISSNRVEI 175
Query: 163 DP 164
P
Sbjct: 176 SP 177
>gi|58580949|ref|YP_199965.1| 16S rRNA-processing protein RimM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188578072|ref|YP_001915001.1| 16S rRNA-processing protein RimM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425543|gb|AAW74580.1| 16S rRNA processing protein RimM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188522524|gb|ACD60469.1| 16S rRNA processing protein RimM [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 180
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY ++ + +E I ++
Sbjct: 11 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD 70
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 71 QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 128
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 129 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 175
>gi|326333673|ref|ZP_08199910.1| 16S rRNA processing protein RimM [Nocardioidaceae bacterium
Broad-1]
gi|325948579|gb|EGD40682.1| 16S rRNA processing protein RimM [Nocardioidaceae bacterium
Broad-1]
Length = 181
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 18/168 (10%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR-------ELRILKMYRK 56
+L+ IG HG+ G V ++ + P R+ VL + + L +
Sbjct: 1 MLVGRIGKPHGIRGFVTVEVRTDEPD--RRFAEGTVLRTQPPKGSAYAAKRLTVEGARWH 58
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEED--EFFNTDLEEMETFDRQGK 114
+ F I + + A R L+A D EE ED E+++ L + FD +G+
Sbjct: 59 GQVLQVAFEEITDRNEAEAARGTLLFA---DVPAEETPEDPDEYYDHQLIGLTAFDEEGR 115
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V + + GA +L I+ + L+PF K V V+L E K++I
Sbjct: 116 ELGTVKALVHGGAQDLLTIRTPDRRDALVPFVKALVPVVDLTEKKVVI 163
>gi|296126136|ref|YP_003633388.1| 16S rRNA processing protein RimM [Brachyspira murdochii DSM 12563]
gi|296017952|gb|ADG71189.1| 16S rRNA processing protein RimM [Brachyspira murdochii DSM 12563]
Length = 169
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 7 LVLMATIGTTHGLNGEVYID-----SYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
++ A I HGL GEV + +A+ P+ LN+ + + + + +KNK F+
Sbjct: 2 IIFYAKITGIHGLKGEVEMTFSDKGYFASLPV-LNKNTSIIINGQTFTVTNVKKKNKAFV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID + A EL L ++ + EL+ D F+ +L + D +G++
Sbjct: 61 LALKDIDTLEKAKELIGLDIFIDSSNLP--ELDNDTFYEAELIGYKIIDSDNNIYGEITD 118
Query: 122 VYNFGAGSILEIK 134
VY+ + + EIK
Sbjct: 119 VYSIPSNYVFEIK 131
>gi|229006118|ref|ZP_04163806.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
gi|228755194|gb|EEM04551.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
Length = 171
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GE+ + S + P + Y+ + L + + +R++K F +
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASHRQHKTFDLL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G +N+ +L+ + + EL E E++ ++ + +G+ G + +
Sbjct: 67 TFEGYNNVDEVEKLKGSSIKVPEEQLG--ELAEGEYYYHEIIGCKVVTEEGEDLGTIKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 125 LSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNI-ENKLVTIHVMEGL 170
>gi|317125415|ref|YP_004099527.1| 16S rRNA processing protein RimM [Intrasporangium calvum DSM 43043]
gi|315589503|gb|ADU48800.1| 16S rRNA processing protein RimM [Intrasporangium calvum DSM 43043]
Length = 182
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP--------IDLNRYVLYSNDNRELRILKMYRKNKR 59
VL+A IG HGL GEV + + ++P + S R+L + N
Sbjct: 6 VLVARIGKPHGLRGEVTVQLHTDDPERRFAPGEVLETEATPGSGVPRQLTVRTTRDHNGT 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETFDRQGKYWGQ 118
++ F I + A LR +L + +E E+D +F DL +E DR+G G
Sbjct: 66 WLLGFEEIPDRTGAEGLRGTRLVVEASAVTADEDEDDAAWFEDDLVGLEVRDREGLVLGM 125
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ A L I+ + T +PF + V V + +++D
Sbjct: 126 VTGLDLGAAQDRLVIRLSDGVTAQVPFVEAIVPTV--AADHVVVD 168
>gi|46579250|ref|YP_010058.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603187|ref|YP_967587.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|59798766|sp|Q72DU2|RIMM_DESVH RecName: Full=Ribosome maturation factor rimM
gi|166226438|sp|A1VFE4|RIMM_DESVV RecName: Full=Ribosome maturation factor rimM
gi|46448664|gb|AAS95317.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563416|gb|ABM29160.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|311233079|gb|ADP85933.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris RCH1]
Length = 176
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN---RELRILKMYRKNKRFIA 62
+ + + + HGL GEV +D YA++P L V R +++ M R +
Sbjct: 5 RFIEIGLLTRPHGLKGEVCVDYYADSPFLLEGTVYLKAGRAAPRPVKVQSMRMHKGRPLV 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME-TFDRQGKYWGQVCG 121
F G+++ +A LR + EL+EDE + +LE + D G++ G +
Sbjct: 65 IFEGVNDRTAAELLRGHVMLVPEDTLP--ELDEDEVYLFELEGISVVIDESGEHLGVIER 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ I I+ K L P VL+++L I P
Sbjct: 123 IDTDAYQEIWVIRTPQGKEVLFPAAAPFVLDIDLDSRTARIAP 165
>gi|145297737|ref|YP_001140578.1| 16S rRNA-processing protein RimM [Aeromonas salmonicida subsp.
salmonicida A449]
gi|172044435|sp|A4SIV8|RIMM_AERS4 RecName: Full=Ribosome maturation factor rimM
gi|142850509|gb|ABO88830.1| 16S rRNA processing protein RimM [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 173
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSND-NRELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ A D N +++ N REL++ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWMINQNGVWRELKVSAWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKIDGIDLREDALALTNVEIGVPADLLP--ALPEGEFYWRDLIGCSVSTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ +L ++ ++ F LIPF + V++ ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKHIDLTARTIEVD 168
>gi|21223948|ref|NP_629727.1| 16S rRNA-processing protein RimM [Streptomyces coelicolor A3(2)]
gi|256784950|ref|ZP_05523381.1| 16S rRNA-processing protein RimM [Streptomyces lividans TK24]
gi|289768842|ref|ZP_06528220.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
gi|61230608|sp|P0A4D3|RIMM_STRCO RecName: Full=Ribosome maturation factor rimM
gi|61230611|sp|P0A4D4|RIMM_STRLI RecName: Full=Ribosome maturation factor rimM
gi|3191986|emb|CAA19385.1| putative 16S rRNA processing protein [Streptomyces coelicolor
A3(2)]
gi|3336921|emb|CAB06806.1| hypothetical protein [Streptomyces lividans]
gi|289699041|gb|EFD66470.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
Length = 188
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASTGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + A LR+ L A D + +EDE+++ L +++ G G++ +
Sbjct: 63 FAGVHDRTGAEALRNTLLIAD-VDPDERPEDEDEYYDHQLIDLDVVTEDGTEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + ++ +PF V ++L + +IDP +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVYVPFVSEIVTGIDLDAQRAVIDPPPGLIDDRAEIASARDAGA 181
Query: 184 DSAGKKS 190
+ AG ++
Sbjct: 182 EDAGDEA 188
>gi|237800085|ref|ZP_04588546.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022940|gb|EGI02997.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 179
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L + R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKGLDDREEARLLSGYDICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|295696072|ref|YP_003589310.1| 16S rRNA processing protein RimM [Bacillus tusciae DSM 2912]
gi|295411674|gb|ADG06166.1| 16S rRNA processing protein RimM [Bacillus tusciae DSM 2912]
Length = 175
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 12/171 (7%)
Query: 10 MATIGT---THGLNGEVYIDSYANNPIDLNRY--VLY----SNDNRELRILKMYRKNKRF 60
M T+G THGL GEV I + P R VL+ + ELR+ K + F
Sbjct: 7 MYTVGVVVGTHGLRGEVRIFPRTDFPEVRFRQGSVLWLDGGTGPAMELRVEKARKHKNVF 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F+G +I + + +L L E ++ L D G++ G++
Sbjct: 67 IVQFAGFHSIQAVEPWKGRELKVPESALMP--LPEGRYYIHQLVGCRVVDEHGRWLGELS 124
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V GA + ++ K L+P V V++ E+++++ + GL
Sbjct: 125 EVLQPGANDVYVVRRPGAKDLLVPAIPSVVKRVSV-EDRLMVVSLPEGLEE 174
>gi|78046899|ref|YP_363074.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|109893068|sp|Q3BVY9|RIMM_XANC5 RecName: Full=Ribosome maturation factor rimM
gi|78035329|emb|CAJ22974.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 180
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 11 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRD 70
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 71 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 128
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ N I++D
Sbjct: 129 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFDANLIVVD 175
>gi|317152479|ref|YP_004120527.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
gi|316942730|gb|ADU61781.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
Length = 199
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRI---LKMYRKNKRFI- 61
L+L+ + HG+ GE+ I S+A++P LY D + I ++ +R++K +
Sbjct: 6 LILVGGVVRPHGIRGEICIKSHADSPSLFGLVAALYLQDKGKPPIPHAVRSWREHKGMVL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
T G+D+ A LR ++ + D EL+E E + L G G +
Sbjct: 66 LTLDGVDDRDKAEALRGREVLVREADLP--ELDEGEHYLYQLMGCRVTLADGTDVGVLEH 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G I N ++P VL+V+L I+IDP A L+
Sbjct: 124 FFETGEQDTWVIINEAGTEIMLPAVPEFVLDVDLDAGVIVIDPPAGLLD 172
>gi|117620610|ref|YP_855209.1| 16S rRNA-processing protein RimM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|171855192|sp|A0KG24|RIMM_AERHH RecName: Full=Ribosome maturation factor rimM
gi|117562017|gb|ABK38965.1| 16S rRNA processing protein RimM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 173
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSND-NRELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ A D N +++ N RE+++ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWLINQNGVWREIQVSSWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKLDGIDVREDALALTNVEIGVAADLLP--ALPEGEFYWRDLIGCSVVTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ +L ++ ++ F LIPF + V++ ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKNIDLTARTIEVD 168
>gi|317508408|ref|ZP_07966078.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
gi|316253255|gb|EFV12655.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
Length = 179
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN---------RYVLYSNDNRELRILKMYRKNK 58
+++ I +HGL GEV ++ + P +L R + LR++ +
Sbjct: 4 LVVGRIAKSHGLVGEVAVEIRTDEP-ELRFAPGSALAVRMPKAKAAGKTLRVVSVREHAN 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
R + +F G+ + +A LR L + +D E + DEF++ +L + D G G
Sbjct: 63 RLLVSFEGVVDRTAADSLRGALLVVRSEDLPPNE-DPDEFYDHELVGLRIEDHGTGAELG 121
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVN 154
++ V + G L + + LIPF V+E++
Sbjct: 122 EIADVAHSAGGDWLVARVKDGREVLIPFVAAIVVEIS 158
>gi|312143701|ref|YP_003995147.1| 16S rRNA processing protein RimM [Halanaerobium sp. 'sapolanicus']
gi|311904352|gb|ADQ14793.1| 16S rRNA processing protein RimM [Halanaerobium sp. 'sapolanicus']
Length = 173
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 1 MVKL-DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN-RELRILKMYR 55
M+KL DK + + I G GEV + + P +L+ L + D EL I + R
Sbjct: 1 MIKLQDKYIEIGKITRYQGNKGEVRVMPSTDIPQRFFELDSVFLKNADEFYELEI-EYIR 59
Query: 56 KNKRF-IATFSGIDNIHSASELRDLK-LYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+K+F I F GID+I A EL++ + L + + + L ED ++ DL + +
Sbjct: 60 FHKQFVIIKFFGIDSIDQAEELKNSRVLIVESEKYL---LPEDSYYVDDLVGCKVYLSDD 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
Y G+V V + I+ +K K +++P ++ ++E++L+ KI+ +PI L+
Sbjct: 117 TYLGKVIEVVDTSGTDIIIVKGEA-KEYMLPASREMIIEIDLEAEKIIYNPIQGLLD 172
>gi|150390505|ref|YP_001320554.1| 16S rRNA processing protein RimM [Alkaliphilus metalliredigens
QYMF]
gi|166977501|sp|A6TRS7|RIMM_ALKMQ RecName: Full=Ribosome maturation factor rimM
gi|149950367|gb|ABR48895.1| 16S rRNA processing protein RimM [Alkaliphilus metalliredigens
QYMF]
Length = 168
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN--NPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ K++ + I THG+ GE+ + S ++ + +V + + I + + I
Sbjct: 1 MKKMLKVGQIVNTHGIKGELKVTSLSDYLERFEELEWVYIQGYDEKYYIGNIKYRPTTVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G DNI+ + + Y + + EL ED F+ DL ++ + + Y G++
Sbjct: 61 LSFEGYDNINIVEQFKGK--YVLIDESQRRELPEDTFYKADLIGLDGYTVEEVYLGKLVD 118
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + ++ K LIP K + E++L++ +I +DPI
Sbjct: 119 IIQAGSNEVYVFRDKETNKDILIPAVKEFIPEISLEKKRITVDPIEG 165
>gi|90109245|pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna
Processing Protein Rimm (Pa3744) From Pseudomonas
Aeruginosa At 2.46 A Resolution
Length = 187
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 18 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 77
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 78 AAKLKGLDDREEARTFTGYEICIPRSELP--SLEEGEYYWHQLEGLKVIDQGRQLLGVID 135
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + +K ++ L+P+T VL ++L + +D
Sbjct: 136 HLLETGANDVXVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEXRVD 182
>gi|260767212|ref|ZP_05876154.1| 16S rRNA processing protein RimM [Vibrio furnissii CIP 102972]
gi|260617820|gb|EEX42997.1| 16S rRNA processing protein RimM [Vibrio furnissii CIP 102972]
gi|315181157|gb|ADT88071.1| 16S rRNA-processing protein [Vibrio furnissii NCTC 11218]
Length = 184
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M K D+ +++ G ++G+ G + + SY ++ + Y V + + E ++ R
Sbjct: 9 MSKQDEKIVVGKFGASYGIRGWLKVFSYTDDAESIFDYSPWFVNHKGEWVEYKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK +A G+D A+ + + ++ EL EDEF+ +L M+ QG
Sbjct: 69 NKGMVAKLQGLDVREDANLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTQGYNL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+V + G+ +L +K ++ F LIPF + V++ ++ +I +D
Sbjct: 127 GEVVDMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKNIDRTAQRIEVD 179
>gi|313115223|ref|ZP_07800706.1| 16S rRNA processing protein RimM [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622452|gb|EFQ05924.1| 16S rRNA processing protein RimM [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 178
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 15 TTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIH 71
TTHG+ GE+ ++ + + + R + R +I+ + + + + G+D++
Sbjct: 12 TTHGVRGEMKLELWCDGVNFLKKVGRLYPSAQGGRAYKIVSIRAQGQMALLQLEGVDDMD 71
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAGSI 130
+A LR Y R D L ++ DL E D G+ +G V V + GA I
Sbjct: 72 AARALRGQVFYFDR---NDATLPAGRWYVADLIGCEVRDADTGRVYGVVTSVDHPGAQDI 128
Query: 131 LEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+K K ++ P + E N E +L+ PI L++
Sbjct: 129 YTVKAPNGKEYMFPGVDAFLKERNPPEGYLLVTPIPGLLDD 169
>gi|229031472|ref|ZP_04187472.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
gi|228729761|gb|EEL80741.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
Length = 171
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKSTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ A + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGCNNVDEAEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|124266297|ref|YP_001020301.1| 16S rRNA-processing protein RimM [Methylibium petroleiphilum PM1]
gi|166226450|sp|A2SES7|RIMM_METPP RecName: Full=Ribosome maturation factor rimM
gi|124259072|gb|ABM94066.1| 16S rRNA processing protein RimM [Methylibium petroleiphilum PM1]
Length = 193
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
LRI + +AT + + ++A LR ++ R F ++ DE++ DL +
Sbjct: 67 LRITNAREQGDVIVATAQDVADRNAAEALRGCSVFVSRASFPTADV--DEYYWIDLIGLA 124
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKN--------TMEKTFLIPFTKFAVLEVNLQENK 159
+R+G+ G V + + GA S+L + ++E+ LIPF + V+L++
Sbjct: 125 VVNREGQALGNVADLLDTGAHSVLRVTQVETDDQGRSLERERLIPFVAAYIDAVSLEQRC 184
Query: 160 ILID 163
I +D
Sbjct: 185 ITVD 188
>gi|84622877|ref|YP_450249.1| 16S rRNA-processing protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|67461247|sp|Q5H391|RIMM_XANOR RecName: Full=Ribosome maturation factor rimM
gi|109893069|sp|Q2P652|RIMM_XANOM RecName: Full=Ribosome maturation factor rimM
gi|209573732|sp|B2SJV2|RIMM_XANOP RecName: Full=Ribosome maturation factor rimM
gi|84366817|dbj|BAE67975.1| Probable 16S rRNA processing protein rimM [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY ++ + +E I ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|253702082|ref|YP_003023271.1| 16S rRNA processing protein RimM [Geobacter sp. M21]
gi|251776932|gb|ACT19513.1| 16S rRNA processing protein RimM [Geobacter sp. M21]
Length = 172
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELR---ILKMYRKNKRF 60
K +L+ I T G+ G++ + +A + +++ V + L ++ KR
Sbjct: 5 KKLLIGKIQGTQGIKGQLRVIPFAGDASSISQLNEVFVKSPTGALEPFAVVSAKAHGKRV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T DNI+ L ++YA R EL +DEF+ +DL ++ G+ G++
Sbjct: 65 ILTLRPFDNINQVLHLVGREIYADRVSLP--ELPDDEFYWSDLLGLQVATSDGEELGELV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + +K + LIP + VL ++L E ++ +
Sbjct: 123 DIIETGSNDVYVVKKD-GREVLIPALEDVVLSIDLAEGRMTV 163
>gi|162452713|ref|YP_001615080.1| 16S rRNA processing protein [Sorangium cellulosum 'So ce 56']
gi|209573621|sp|A9F3N7|RIMM_SORC5 RecName: Full=Ribosome maturation factor rimM
gi|161163295|emb|CAN94600.1| 16S rRNA processing protein [Sorangium cellulosum 'So ce 56']
Length = 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL------NRYVLYSNDNRELRILKMYRKNKR 59
+ V +A + HG+ GE+ + Y N DL R L R+ +I+ +K
Sbjct: 4 RYVPVADVARPHGVQGELRLRLY-NEASDLLLTRPPIRLRLPDGSARDAKIVATRPVDKA 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +GID+ +A LR + R F L E EF+ D+E G G V
Sbjct: 63 LLVRIAGIDDRDAAEALRGATVCVPRDAFA--PLSEGEFYACDVEGARVMTPDGDLLGHV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ ++ +L ++ + +P T+ V V+ + +
Sbjct: 121 RSLQSYPTCDVLVVERQGADSIEVPLTESFVSSVDAERQVV 161
>gi|227892626|ref|ZP_04010431.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
gi|227865558|gb|EEJ72979.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
Length = 171
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A + TTHGLNGEV + + P D + ++ N+ ++ +K R K+F + F
Sbjct: 6 VARVLTTHGLNGEVKVSVITDFPEDRFAVGMHLALKNNTEDVLTVKKGRPFKQFWLVQFE 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I +A +LR L D EL E ++ D+ + + D + G G++ + +
Sbjct: 66 EIKDIDAAEKLRGQVLVVSEDDRG--ELPEGAYYYKDIFDCDVIDNESGARLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + + K + IP V +V++ K+ ++
Sbjct: 124 PGANDVWLVHEDSGKEYWIPNIADVVKKVDVANKKVYVE 162
>gi|300114670|ref|YP_003761245.1| 16S rRNA processing protein RimM [Nitrosococcus watsonii C-113]
gi|299540607|gb|ADJ28924.1| 16S rRNA processing protein RimM [Nitrosococcus watsonii C-113]
Length = 175
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELR-ILKMYRKNKRF 60
++ VL+ I +G+ G + + SY +N +D + L N + R ++K + K
Sbjct: 11 ERYVLVGRISGLYGVQGWLRVYSYTQSRDNILDYEPWYLRQNGAWQARRLMKGRVQGKGI 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID A+ ++ R E E E++ DL ++ QG+ GQV
Sbjct: 71 VVALEGIDERDVAALWVGCEIAVHRNQLPPPE--EGEYYWADLIGLQVITVQGEVLGQVD 128
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPF-TKFAVLEVNLQENKILID 163
+ GA +L ++ E+ L+PF V +V+LQ+ + +D
Sbjct: 129 RLLETGANDVLVVRGERER--LLPFLMGMIVKQVDLQQGLLTVD 170
>gi|254796524|ref|YP_003081360.1| 16S rRNA processing protein RimM [Neorickettsia risticii str.
Illinois]
gi|254589761|gb|ACT69123.1| 16S rRNA processing protein RimM [Neorickettsia risticii str.
Illinois]
Length = 160
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+V + +THG+ G V SY + + R F+ T S
Sbjct: 1 MVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFGRGFPMFVLTLSR 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + A +L L ++ L+ E++ DL + +D +G+ G V +YNFG
Sbjct: 61 VGSACEAEKLVGLDVFLSESLLP--PLQVGEYYCKDLVGLAVYDSEGRV-GHVSMLYNFG 117
Query: 127 AGS-ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A + +LEI K +IPFT V +++L + ++ +
Sbjct: 118 AAAEVLEIVLLSGKKVMIPFTSACVTDIDLNKKRLAV 154
>gi|86146311|ref|ZP_01064635.1| 16S rRNA-processing protein [Vibrio sp. MED222]
gi|218710518|ref|YP_002418139.1| 16S rRNA-processing protein RimM [Vibrio splendidus LGP32]
gi|254797771|sp|B7VK28|RIMM_VIBSL RecName: Full=Ribosome maturation factor rimM
gi|85835790|gb|EAQ53924.1| 16S rRNA-processing protein [Vibrio sp. MED222]
gi|218323537|emb|CAV19735.1| 16S rRNA processing protein RimM [Vibrio splendidus LGP32]
Length = 184
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + ++ ++M +G+T+G+ G + + SY +N + Y + + E ++ R
Sbjct: 9 MSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEYKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ ++ +G+D A + + ++ EL EDEF+ +L M+ F +G
Sbjct: 69 GQGYVCKLAGLDVREDAQLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVFTTKGYNL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+V + G+ +L IK ++ F LIP+ + V+ +V+ + +I +D
Sbjct: 127 GEVTDLLETGSNDVLVIKANLKDAFGQKERLIPYLEEQVIKKVDREARRIEVD 179
>gi|229098311|ref|ZP_04229258.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
gi|229104404|ref|ZP_04235073.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|229117328|ref|ZP_04246706.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|228666228|gb|EEL21692.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|228679102|gb|EEL33310.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|228685209|gb|EEL39140.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
Length = 171
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKSTDFLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ A + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYNNVDEAEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|294669689|ref|ZP_06734756.1| hypothetical protein NEIELOOT_01590 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308602|gb|EFE49845.1| hypothetical protein NEIELOOT_01590 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 169
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 7/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSN-DNRELRILKMYRKNKRFI 61
+ V M I G+ G V + + Y+++ +D + L + D R + +
Sbjct: 6 QWVAMGYIKGAFGVKGWVKVAADTEYSDSLLDYPEWRLRKDKDVRTVAVESGKLNGDGLQ 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
FSGID+ +A LR + R+DF +EDE++ DL M +R+G G V
Sbjct: 66 VKFSGIDDRDAAHLLRGYTVEISREDFA--PADEDEYYWADLVGMTVTNREGNVLGVVDN 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA IL ++ + LIPF + +VN + I+ D
Sbjct: 124 MMETGAHDILVVRGECGQK-LIPFVGRFIDDVNRESKTIIAD 164
>gi|325924837|ref|ZP_08186272.1| 16S rRNA processing protein RimM [Xanthomonas perforans 91-118]
gi|325544767|gb|EGD16115.1| 16S rRNA processing protein RimM [Xanthomonas perforans 91-118]
Length = 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFDANLIVVD 165
>gi|308081839|ref|NP_001183438.1| hypothetical protein LOC100501868 [Zea mays]
gi|238011556|gb|ACR36813.1| unknown [Zea mays]
Length = 661
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 32/190 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYV-LYSNDNRELRILKMYRK-- 56
++LV + + HG+ G+V + + P R++ + +++R ++ R
Sbjct: 91 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 150
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K +I +F G++N+ A ++ + K +D E+E+DEF++ DL M +
Sbjct: 151 HTGKKSWIVSFDGVNNLDEARQIVGSAVLVKARD--RPEIEDDEFYSLDLVGMRVIVKDT 208
Query: 113 GKYWGQVCGVYNFGAGSILE-IKNTMEKTFL-----------------IPFTKFAVLEVN 154
GK G V V+NFG G +L+ I + E T + IPF + V +V+
Sbjct: 209 GKLVGTVGQVFNFGGGDLLQVIMGSSEGTAVDPDSENQDSISSREHVWIPFAEDIVPDVD 268
Query: 155 LQENKILIDP 164
+ ++ I P
Sbjct: 269 MASREMRITP 278
>gi|332686530|ref|YP_004456304.1| 16S rRNA processing protein RimM [Melissococcus plutonius ATCC
35311]
gi|332370539|dbj|BAK21495.1| 16S rRNA processing protein RimM [Melissococcus plutonius ATCC
35311]
Length = 175
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELR-ILKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L++ D + ++K +RK+K F I
Sbjct: 8 VGKIVNTQGIKGEVRVISQTDFPEE--RYKRGAKLTLFNKDKEPIELVIKSHRKHKNFDI 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F +I+ RD L K+ D L E+EF+ ++ + D QG+ G +
Sbjct: 66 LSFENHPSINDVENYRDGILKVKKSQLSD--LPENEFYYHEIIGLTVIDDQGQKIGHIKE 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL 155
+ + GA + +K L+P+ + V+L
Sbjct: 124 ILSPGANDVWVVKQNDGTELLLPYIDSVIQSVDL 157
>gi|291550680|emb|CBL26942.1| 16S rRNA processing protein RimM [Ruminococcus torques L2-14]
Length = 169
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + + I +THGL GEV + ++ L VL + + ++ R K+F
Sbjct: 1 MEQFLQVGVISSTHGLRGEVKVFPTTDDAARFQTLKNVVLDTGREKLDLEIQSVRFFKQF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQ 118
I F GIDNI+ + + L+ R++ ELEEDE++ DL ME + D + +G
Sbjct: 61 VIVKFKGIDNINDIEKYKGKSLFVTRENAV--ELEEDEYYIGDLIGMEVYTDDSEERFGV 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ V GA + I + L+P +L+++++ K+
Sbjct: 119 LKDVMETGANEVYIITSENHGEVLLPAIHECILDIDVEAKKM 160
>gi|119511287|ref|ZP_01630402.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
gi|119464078|gb|EAW45000.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
Length = 223
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKM----YR 55
LD+ + + I GL+GE+ + ++ P + R++ + D RE + +++ Y
Sbjct: 33 LDEWLEIGKIVAPQGLSGELRVYPESDFPERFEVPGTRWLWHPGD-REPQPVELLSGRYV 91
Query: 56 KNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
+ K I + +G+ N + A LRD KL D +L EDE+ TDL M F ++ G
Sbjct: 92 EGKNLCIISLAGVRNRNDAEALRDYKLMVPASD--RPQLGEDEYHVTDLIGMLVFMQESG 149
Query: 114 KYWGQVCGVYNFGAGSILEIK----------NTME----KTFLIPFTKFAVLEVNLQENK 159
+ G+V V G +LE+K T++ K LIPF K V+L +
Sbjct: 150 ELVGEVVDVIPAG-NFLLEVKLHQQIPDVESETLQPQSPKKLLIPFVKAIAPVVDLPSRR 208
Query: 160 ILIDP 164
I I P
Sbjct: 209 IEITP 213
>gi|225419754|ref|ZP_03762057.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
gi|225041591|gb|EEG51837.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSND---NRELRILKMYRKN 57
++ ++ + I + HG+ GEV + ++ L + VL + + E+ +K ++
Sbjct: 24 MEDMLRVGVITSPHGVRGEVKVFPTTDDAARFKTLKQVVLDTGKETISLEIEHVKFFKN- 82
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F G DNI+ + R L +R+ + ELEEDE+F DL + G+ G
Sbjct: 83 -MVILKFKGYDNINDIEKYRSKDLLIRRE--QAVELEEDEYFIADLIGLAVVTDAGEALG 139
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V V GA + ++ + L+P +L+VNL E ++ +
Sbjct: 140 TVKDVMETGANDVYIVEMKDGRELLLPAIGDCILDVNLDEGRMTV 184
>gi|269926737|ref|YP_003323360.1| 16S rRNA processing protein RimM [Thermobaculum terrenum ATCC
BAA-798]
gi|269790397|gb|ACZ42538.1| 16S rRNA processing protein RimM [Thermobaculum terrenum ATCC
BAA-798]
Length = 179
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIAT 63
D V++ I + HG+ GEV ++ +NP + +Y D +++ + K +
Sbjct: 14 DNYVIVGRILSPHGVRGEVKVEPITDNPERFKQLRQVYVGDALH-KVVSVRVLPKFVLVR 72
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+++ A L + LY ++ L ED F++ DL+ ME G+ G + +
Sbjct: 73 FEGMESPEQAKALSGMYLYIPKEQVMP--LPEDTFYHFDLQGMEVVSTSGEPLGTLREIL 130
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
A + + + LIP K V +V+L+ +++++ I L
Sbjct: 131 IREANDVFVVDHP-RGEILIPAIKDVVKDVDLENRRLVVELIPGLL 175
>gi|300854477|ref|YP_003779461.1| putative 16S rRNA processing protein [Clostridium ljungdahlii DSM
13528]
gi|300434592|gb|ADK14359.1| predicted 16S rRNA processing protein [Clostridium ljungdahlii DSM
13528]
Length = 162
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRFIAT 63
+ + I THG+ GE+ + + D+ R+ + D I++ ++K+ I
Sbjct: 4 FITVGQIINTHGIKGELKVYPLTD---DIERFKKLKSAYIDGTLKNIIECKLQSKKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A + + R D +LEE +F TD+ D G ++G+V V
Sbjct: 61 IEGIDSIEEAMAYKQKYIEIPRNDAV--KLEEGTYFITDIIGCSVVDEDGTFYGKVGDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + IK E LIP + V+ +++++ +I+I P+ +
Sbjct: 119 HTHNNDVYWIKG--ENELLIPAIENVVVSIDVEKEEIVIKPVKTWM 162
>gi|229174508|ref|ZP_04302040.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
gi|228609068|gb|EEK66358.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
Length = 171
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKSTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ A + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYNNVDEAEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|296274035|ref|YP_003656666.1| 16S rRNA processing protein RimM [Arcobacter nitrofigilis DSM 7299]
gi|296098209|gb|ADG94159.1| 16S rRNA processing protein RimM [Arcobacter nitrofigilis DSM 7299]
Length = 175
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A +G + GLNGE+ I ++ P + ++ + + + +++ I F I
Sbjct: 5 IYVAKLGKSVGLNGEIKIFLDSDFPEQFKKGAIFITNKGNSLTVNSFNESRGTI-NFVEI 63
Query: 68 DNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+NI A +L + +L+ +++ K+ +L +D+FF DL + F+ + + G + ++ +
Sbjct: 64 NNIDDAKKLTNQQLFTSQENTKENCKLNKDQFFWFDLIDCMVFENE-ENLGTIIEIHRYP 122
Query: 127 AGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G EIK + KTFL+P+ K + V+++ KI A L N+
Sbjct: 123 LGDYFEIKTETSLVEKNLPKTFLLPYEKNYIKSVDIKSKKIEAKDAKAILENS 175
>gi|229824951|ref|ZP_04451020.1| hypothetical protein GCWU000182_00300 [Abiotrophia defectiva ATCC
49176]
gi|229790954|gb|EEP27068.1| hypothetical protein GCWU000182_00300 [Abiotrophia defectiva ATCC
49176]
Length = 181
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 10 MATIGTTHGLNGEVYI----------DSYANNPIDLN--RYVLYSNDNRELRILKM-YRK 56
+ + +THGL G + + DS IDL+ + + N E+ + + Y K
Sbjct: 7 VGVLTSTHGLTGGIKVFPTTDCLDRFDSLKRAFIDLSSGKGTIKGNGMLEVEVENVKYFK 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N I TF GIDN+ ++ + + L R+D L E E + +D+ + GK +
Sbjct: 67 NTP-IVTFKGIDNVDLVAKYKGMDLLVAREDAL--PLAEGEHYVSDVIGCKVITDTGKEY 123
Query: 117 GQVCGVYNFGAGSILEIK----NTMEKTFLIPFTKFAVLEVNLQEN 158
G V V GA +L +K + K F +P VLE+N +E
Sbjct: 124 GVVSEVIETGANKVLVVKPNEAHKELKEFCLPHIPECVLEINTEEG 169
>gi|166713047|ref|ZP_02244254.1| 16S rRNA-processing protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY ++ + +E I ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVISGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVADRDTVEAMHGTEIYVARGALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|161507705|ref|YP_001577661.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus DPC
4571]
gi|172048318|sp|A8YVT3|RIMM_LACH4 RecName: Full=Ribosome maturation factor rimM
gi|160348694|gb|ABX27368.1| rRNA processing protein [Lactobacillus helveticus DPC 4571]
gi|328465658|gb|EGF36875.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus MTCC
5463]
Length = 171
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I TTHGLNGEV ++ + P R+ L S+ NR L + K + ++
Sbjct: 6 VARILTTHGLNGEVKVNVITDFP--EERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQ 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
F I +I A +LR L +D EL + ++ D+ + + D + GK G++ +
Sbjct: 64 FKEITDIDQAEKLRGQILVVSEEDRG--ELPDGVYYYKDIFDCDVIDEETGKRIGKIVDI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA I ++ K + IP V +V++ K+ ++ + GL +
Sbjct: 122 QSPGANDIWLVREDDGKEYWIPNIADVVKKVDVAAKKVYVE-LMEGLRD 169
>gi|225351185|ref|ZP_03742208.1| hypothetical protein BIFPSEUDO_02775 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158641|gb|EEG71883.1| hypothetical protein BIFPSEUDO_02775 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 195
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D E +++ R K R+
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPGAVLYTKDGEEEYVVENSRTFKNRW 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GIDN + + LY + D +D LE DE++ DL +E + G
Sbjct: 68 IIKFEGIDNRDQSEAANGIVLYGEADDPEDM-LEADEWYPKDLIGLEARLAEDNMLGLEP 126
Query: 121 GVYNFGAGSILEIKN-----------------TMEKTFLIPFTKFAVLEVNLQENKILID 163
GV ++E+ +E + L+PF V +++L+E + +D
Sbjct: 127 GVVVGKVVDVIEVAQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEEGYLTLD 186
Query: 164 P 164
P
Sbjct: 187 P 187
>gi|125553343|gb|EAY99052.1| hypothetical protein OsI_21009 [Oryza sativa Indica Group]
Length = 644
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 32/188 (17%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR------ELRILKMYR 55
LV++ + HG+ G+V + + P R++ + EL + +
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKAGD--RPKMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI-----KNTMEKT-------------FLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ ++T+ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQDSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDP 164
++ I P
Sbjct: 254 SREMWITP 261
>gi|294815372|ref|ZP_06774015.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
gi|294327971|gb|EFG09614.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
Length = 244
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
+++ IG HG+ GEV ++ + P + +L R ++ R + R +
Sbjct: 28 LVVGRIGRAHGVKGEVSVEVRTDEPELRLGPGAVLLTDPPARGPLTIETGRVHSGRLLLR 87
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEE--DEFFNTDLEEMETFDRQGKYWGQVCG 121
F+G+ + + A LR+ L A D E E DE+++ L +++ G G++
Sbjct: 88 FAGVRDRNGAEALRETLLIA---DVDPEASPEGDDEYYDHQLIDLDVVTVDGTEVGRITE 144
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + + ++ +IPF V ++L+E + +IDP
Sbjct: 145 ISHLPSQDLFIVERPDGTEVMIPFVTEIVTSIDLEEQRAVIDP 187
>gi|171463910|ref|YP_001798023.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|209573588|sp|B1XVN2|RIMM_POLNS RecName: Full=Ribosome maturation factor rimM
gi|171193448|gb|ACB44409.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 184
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 25/181 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNR--------------- 46
L+ L+ + I GL G+V I +++ P+ L ++ V S R
Sbjct: 6 LNDLIELGAISEAQGLRGQVKIRPHSSEPVALLSSKSVWLSLIPRRDAGLSSPVEQASLT 65
Query: 47 --ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
+++ KM+ N + G+ + A L+ ++ R F ++E D ++ DL
Sbjct: 66 QYKVKSAKMHSGN--VVIALEGVTDRDQALALKGARILVARDAFP--KVETDSYYWIDLI 121
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILI 162
+ Q + G+V V GA ++ I + KT +L+PF K V +V+L I +
Sbjct: 122 GCNAINLQNETLGEVIDVTENGAHGVIAIGDASTKTIQYLVPFVKQVVQDVDLSNKTISL 181
Query: 163 D 163
D
Sbjct: 182 D 182
>gi|254000094|ref|YP_003052157.1| 16S rRNA processing protein RimM [Methylovorus sp. SIP3-4]
gi|253986773|gb|ACT51630.1| 16S rRNA processing protein RimM [Methylovorus sp. SIP3-4]
Length = 164
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + GID+ +A + ++ R+ E EE E++ +DL + + Q +
Sbjct: 55 GKTLLVKLVGIDDRDAAFAAKGKQVSVPREQLP--EAEEGEYYWSDLIGLRVSNLQQVDF 112
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V V+ GA ++ +K+ + L+PFT AV EVN++ +L+D
Sbjct: 113 GTVVDVFETGANDVVVVKDDAGRERLVPFTAEAVPEVNVEAGTMLVD 159
>gi|332981638|ref|YP_004463079.1| 16S rRNA processing protein RimM [Mahella australiensis 50-1 BON]
gi|332699316|gb|AEE96257.1| 16S rRNA processing protein RimM [Mahella australiensis 50-1 BON]
Length = 168
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNREL---RILKMYRKNKRF 60
+++ I HG++GE+ I + D+ R+ Y D ++ R+ ++ N
Sbjct: 5 LIIGRILKPHGVSGEMKIQPLTD---DIRRFDDLKCAYIKDKDDMFPHRVERVKYGNDVV 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
GID++++A EL + L+ RQ L E ++ D+ + G Y G+V
Sbjct: 62 YIKLEGIDDMNAARELVNKHLWVDRQHAA--PLPEGSYYVGDIIGCRVYTVDGVYLGEVK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + ++ + +K LIP K + ++++ +I+I+P+ L+
Sbjct: 120 EVLPTGSNDVYDVVDG-QKQVLIPAIKDVIKTIDIEGERIVIEPMEGLLD 168
>gi|302386487|ref|YP_003822309.1| 16S rRNA processing protein RimM [Clostridium saccharolyticum WM1]
gi|302197115|gb|ADL04686.1| 16S rRNA processing protein RimM [Clostridium saccharolyticum WM1]
Length = 169
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRK 56
++ L+ + I +THG+ GEV + + D+NR+ + + REL I +
Sbjct: 1 MENLLRVGVISSTHGVRGEVKVYPTTD---DVNRFNELKKVILDAGQERRELEIQGVKFF 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
I F G D+I+ + + L R + EL DE F DL + +G+
Sbjct: 58 KNMVILKFKGYDSINDIEKYKGKDLLITRD--QAVELGPDENFIVDLIGLRVVTEEGEEL 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G + V GA + E+K K L+P K V V+L E + +
Sbjct: 116 GILTDVIKTGANDVYEVKTAEGKEVLLPAIKECVRNVDLTEGLVTV 161
>gi|254393818|ref|ZP_05008930.1| 16S rRNA processing protein [Streptomyces clavuligerus ATCC 27064]
gi|326443724|ref|ZP_08218458.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
gi|197707417|gb|EDY53229.1| 16S rRNA processing protein [Streptomyces clavuligerus ATCC 27064]
Length = 219
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
+++ IG HG+ GEV ++ + P + +L R ++ R + R +
Sbjct: 3 LVVGRIGRAHGVKGEVSVEVRTDEPELRLGPGAVLLTDPPARGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEE--DEFFNTDLEEMETFDRQGKYWGQVCG 121
F+G+ + + A LR+ L A D E E DE+++ L +++ G G++
Sbjct: 63 FAGVRDRNGAEALRETLLIA---DVDPEASPEGDDEYYDHQLIDLDVVTVDGTEVGRITE 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + + ++ +IPF V ++L+E + +IDP
Sbjct: 120 ISHLPSQDLFIVERPDGTEVMIPFVTEIVTSIDLEEQRAVIDP 162
>gi|313202053|ref|YP_004040711.1| 16S rRNA processing protein rimm [Methylovorus sp. MP688]
gi|312441369|gb|ADQ85475.1| 16S rRNA processing protein RimM [Methylovorus sp. MP688]
Length = 161
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + GID+ +A + ++ R+ E EE E++ +DL + + Q +
Sbjct: 52 GKTLLVKLVGIDDRDAAFAAKGKQVSVPREQLP--EAEEGEYYWSDLIGLRVSNLQQVDF 109
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V V+ GA ++ +K+ + L+PFT AV EVN++ +L+D
Sbjct: 110 GTVVDVFETGANDVVVVKDDAGRERLVPFTAEAVPEVNVEAGTMLVD 156
>gi|257125792|ref|YP_003163906.1| 16S rRNA processing protein RimM [Leptotrichia buccalis C-1013-b]
gi|257049731|gb|ACV38915.1| 16S rRNA processing protein RimM [Leptotrichia buccalis C-1013-b]
Length = 169
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNRELRILKMYRK--NKR 59
++ L+ + TI TH L G V I+S N I+ R +L N+ ++L ++K ++ K+
Sbjct: 1 MENLINIGTIVGTHHLRGSVKINSIFENIEVIENERVLLEKNEKKKLLVVKKVKRLNEKK 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GI+NI A EL K+ +R E E+EF+ DL +E F K G+V
Sbjct: 61 AILDFEGIENIDEAKELNGFKVKIRRDLLP--ERNENEFYIKDLFGIEVFSENEKI-GEV 117
Query: 120 CGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V A +IL I++ +K ++P V +++ N+I + I
Sbjct: 118 VDVMETAAHNILIIEDIETKKEIMVPLIDEFVTKIDFPNNRIEVSLI 164
>gi|84394291|ref|ZP_00993016.1| 16S rRNA-processing protein [Vibrio splendidus 12B01]
gi|84375094|gb|EAP92016.1| 16S rRNA-processing protein [Vibrio splendidus 12B01]
Length = 184
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
++M +G+T+G+ G + + SY +N + Y + + + E ++ R + ++
Sbjct: 16 IVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLNQKGKWVEYKVESWKRHGQGYVCK 75
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+G+D A + + ++ EL EDEF+ +L M+ F +G G+V +
Sbjct: 76 LAGLDVREDAQLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVFTTKGYDLGEVTDLL 133
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+P+ + V+ +V+ + +I +D
Sbjct: 134 ETGSNDVLVIKANLKDAFGQKERLVPYLEEQVIKKVDREARRIEVD 179
>gi|89900196|ref|YP_522667.1| 16S rRNA-processing protein RimM [Rhodoferax ferrireducens T118]
gi|109893040|sp|Q21YL7|RIMM_RHOFD RecName: Full=Ribosome maturation factor rimM
gi|89344933|gb|ABD69136.1| 16S rRNA processing protein RimM [Rhodoferax ferrireducens T118]
Length = 187
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDN--------RELRILKMYRKNKRFI 61
I G+ G + Y+ +P L R+ L + +L I + + +
Sbjct: 20 IADAWGIKGWFKVLPYSADPEALFSARRWFLLPAEKGAKTFSGVAQLAIKEAKVHSDTVV 79
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+ +D+ +A LR +++ R F E +DE++ DL + +R+G G V
Sbjct: 80 ASAQAVDDRTAAEALRGARIFVARSSFPSAE--KDEYYWVDLIGLNVVNREGVAMGTVKE 137
Query: 122 VYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILID 163
+ + GA ++L ++ + + + +IPF + EV+L ++IL+D
Sbjct: 138 LLSTGAQTVLVLEYSQDGKAQERMIPFVSVYIDEVDLPGHRILVD 182
>gi|170693744|ref|ZP_02884902.1| 16S rRNA processing protein RimM [Burkholderia graminis C4D1M]
gi|170141526|gb|EDT09696.1| 16S rRNA processing protein RimM [Burkholderia graminis C4D1M]
Length = 248
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 16 THGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRFIATFSGID 68
+GL G V + ++A+ + R+ L R+ L+ + +A G+
Sbjct: 83 AYGLKGWVKVAAHADAGHGGDALLSAKRWWLMKGRERQSAPSLQAKTHSDSVVALLGGVA 142
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR ++Y R +F LE DEF+ DL ++ + G G+V + + GA
Sbjct: 143 DRDAALALRGSRVYVSRSEFP--ALEADEFYWVDLLGLDVVNLAGVNLGKVADMIDNGAH 200
Query: 129 SILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
S+L I+ T E+ LIPF V V+ +I++D
Sbjct: 201 SVLRIEYAAADKTGKPGTAER--LIPFVGVFVKTVDQAAKQIIVD 243
>gi|257438678|ref|ZP_05614433.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
A2-165]
gi|257198907|gb|EEU97191.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
A2-165]
Length = 184
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 7/172 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRF 60
+ K + + TTHG+ GE+ ++ + + + R R +I + + +
Sbjct: 7 MQKYLEAGKVVTTHGVRGEMKLELWCDGVAFLKKVGRLYTTPQGGRCYKITSIRPQGQMA 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ G+ ++ +A LR Y R D L +++ DL E D GK +G V
Sbjct: 67 LLQLEGVSDMDAARALRGQVFYFDRD---DATLPAGKWYVADLIGCEVRDADTGKVYGVV 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + GA I +K K ++ P + E N E +L+ PI L++
Sbjct: 124 TSVDHPGAQDIYTVKAPSGKEYMFPGVDAFLKERNPPEGYLLVTPIPGLLDD 175
>gi|15615043|ref|NP_243346.1| 16S rRNA processing protein [Bacillus halodurans C-125]
gi|14423895|sp|Q9KA14|RIMM_BACHD RecName: Full=Ribosome maturation factor rimM
gi|10175100|dbj|BAB06199.1| 16S rRNA processing protein [Bacillus halodurans C-125]
Length = 173
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNRELRI-LKMYRKN 57
+ K + + I THG+ GEV + S + D YV+ N N + + + +RK+
Sbjct: 1 MSKWLNVGKIVNTHGVRGEVRVLSTTDFEDDRFSSGKTLYVMRPNQNERVAVTVASHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G +I+ + +L +D EL E EFF ++ G+
Sbjct: 61 KNFDLLCFEGYPSINDVEAFKGGRLQVPIED--RPELGEGEFFYHEIIGCSVVTIAGEEL 118
Query: 117 GQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G+V + + GA + ++ K LIP+ + V +V+L++ +I I+P+
Sbjct: 119 GKVKEILSPGANDVWVVQCRRGGKDLLIPYIEQVVKQVDLEKQQITIEPMEG 170
>gi|259047125|ref|ZP_05737526.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
gi|259036175|gb|EEW37430.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
Length = 171
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKM--YRKNKRF-IAT 63
+ I T GL GEV + S +A + D L + + +R++K F + T
Sbjct: 7 VGKIVNTQGLRGEVRVISTTDFAEERYKKGTELAIFKDGEFLTFVTVASHRRHKNFDLLT 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G++ I + ++ L + ELE+DEF+ ++ +E +G+ G+V +
Sbjct: 67 FEGMNRIEDVEKYKECLLKVAEEQLT--ELEDDEFYYHEIIGLEIVTDEGEVLGKVTEIL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + +K +K LIPF + V +V+ +E K I
Sbjct: 125 SPGSNDVWVVKQKGKKELLIPFIEPVVYKVDKEEKKAYI 163
>gi|319790555|ref|YP_004152188.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
gi|317115057|gb|ADU97547.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
Length = 190
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIA 62
VL+ + HGL GE+ + S + ++ LY +E ++ + K ++
Sbjct: 25 VLIGKVVGVHGLKGELKVKSESDIFERQLEAVDSLTLYRGTRKEEVTVESVKPYKDIYLI 84
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I++ A E +L+ + ELEE EF+ +L ++ F G+ G + +
Sbjct: 85 KFKEINDRSQAEETIGGELWIDENE--RVELEEGEFYYEELLGLKVFTEDGRELGVIKNI 142
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
A ILE++ + KT LIPF + V E++L+ K+ + I
Sbjct: 143 LEQPASHILEVEKSDGKTVLIPFIEQFVKEIDLKNGKVTVSLIEG 187
>gi|260101391|ref|ZP_05751628.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
gi|260084802|gb|EEW68922.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
Length = 184
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I TTHGLNGEV ++ + P + R+ L S+ NR L + K + ++
Sbjct: 19 VARILTTHGLNGEVKVNVITDFPEE--RFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQ 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
F I +I A +LR L +D EL + ++ D+ + + D + GK G++ +
Sbjct: 77 FKEITDIDQAEKLRGQILVVSEEDRG--ELPDGVYYYKDIFDCDVIDEETGKRIGKIVDI 134
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA I ++ K + IP V +V++ K+ ++ + GL +
Sbjct: 135 QSPGANDIWLVREDDGKEYWIPNIADVVKKVDVAAKKVYVE-LMEGLRD 182
>gi|330964076|gb|EGH64336.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 179
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKDLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +N+ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAINMAAGEMKVE 174
>gi|78356144|ref|YP_387593.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|109893013|sp|Q313J8|RIMM_DESDG RecName: Full=Ribosome maturation factor rimM
gi|78218549|gb|ABB37898.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 176
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL---RILKMYRKNKRF 60
+DK V + I HGL GEV + SYA++P + + R+ R +
Sbjct: 1 MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTE 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME-TFDRQGKYWGQV 119
+ GID+ ++A +LR K+ + ELE+DE + D+ D G G +
Sbjct: 61 LLLLEGIDDRNAAEKLRQHKVLIPHAELP--ELEDDEVYIEDILGFTVVLDEDGSTLGTL 118
Query: 120 CGVYNFGAGS----ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
F A + + EI K L P + V E+++ I I P
Sbjct: 119 TA---FSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETIRITP 164
>gi|23098990|ref|NP_692456.1| 16S rRNA processing protein [Oceanobacillus iheyensis HTE831]
gi|33301526|sp|Q8EQZ8|RIMM_OCEIH RecName: Full=Ribosome maturation factor rimM
gi|22777218|dbj|BAC13491.1| 16S rRNA processing protein [Oceanobacillus iheyensis HTE831]
Length = 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYAN--NPIDLNRYVLYSNDNRELR--ILKMYRKNKRF-IATF 64
+ I THG+ GEV + + + D V Y DN+E + ++ +R +K F + F
Sbjct: 8 IGKIVNTHGIRGEVKVVRITDFEDRFDPGNTV-YLQDNKEYKPLVIATHRVHKGFDLLQF 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G NI+ + L L D LEED ++ ++ + +G+ G+V + +
Sbjct: 67 KGYGNINEVEAFKGLMLSIDEDQLTD--LEEDAYYYHEIVGCKVVTSEGEELGKVKEILS 124
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ K LIP+ + V +V++ ENKI+ + G+
Sbjct: 125 PGANDVWVVQRMNAKDLLIPYIEQVVKQVDI-ENKIIKVQLMEGM 168
>gi|152965368|ref|YP_001361152.1| 16S rRNA processing protein RimM [Kineococcus radiotolerans
SRS30216]
gi|209573564|sp|A6W7U9|RIMM_KINRD RecName: Full=Ribosome maturation factor rimM
gi|151359885|gb|ABS02888.1| 16S rRNA processing protein RimM [Kineococcus radiotolerans
SRS30216]
Length = 174
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR-ELRILKMYRKNKRFIAT 63
++A +G HG+ GEV ++ ++P R+ VL ++ +R L + N + T
Sbjct: 4 VVARVGRPHGVRGEVTVEVRTDDPD--TRFAPGAVLRTDPDRGPLTVATARWHNGTLLLT 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+++ + LR+ +L + + ++D ++ L+ + G G V +
Sbjct: 62 FQGVEDRTAVEGLRNTRLVVDLD--DEADPDDDAWYPHQLQGLAAVTTTGTPLGTVKDLL 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA +L + T + L+PF V V+++ K+++ P
Sbjct: 120 TGGAQDVLVVTGTDGREVLVPFVTPLVPRVDVKRGKVVLSP 160
>gi|323700098|ref|ZP_08112010.1| 16S rRNA processing protein RimM [Desulfovibrio sp. ND132]
gi|323460030|gb|EGB15895.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
ND132]
Length = 195
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 6/168 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRK 56
M K + + + HG+ GE I SYA++P +R L+ +D R + +
Sbjct: 1 MKKEPGFIPVGGVVKAHGIRGEFGIKSYADSPALFDRTPLFLSDGKGRPRPIEVTSWREH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ T + + A LR +L + D E +E E + + G
Sbjct: 61 KGLVLMTSPQVTDRDQAEALRGRELLVREADLP--EPDEGEHYLYQMIGCRVVLTDGTEV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G++ G Y G I+N L+P VL+V+L I+++P
Sbjct: 119 GELVGFYETGEQDTWVIENGEGTEILLPAVPEFVLDVDLDTETIVVEP 166
>gi|324999613|ref|ZP_08120725.1| 16S rRNA processing protein RimM [Pseudonocardia sp. P1]
Length = 187
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 20 NGEVYIDSYANNPID--LNRYVLYSNDNR-----ELRILKMYRKNKRFIATFSGIDNIHS 72
GEV ++S ++P + VL+ + R L + + R++ F G+ +
Sbjct: 28 RGEVVVESRTDSPEERFAPGAVLHGSRRRGSGPGPLTVATSRAHSGRWLVLFEGVGDRDG 87
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR ++L + + + + +EF L + G G + V + GS+L
Sbjct: 88 AEELRGVQLLLPTTELAEPD-DPEEFHVHRLTGLRAELTDGTPAGTITDVVHGPGGSLLV 146
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ ++PF V EV+L+ ++++DP
Sbjct: 147 VTRPAGHEAMVPFVGEIVPEVDLEGGRVVLDP 178
>gi|256390712|ref|YP_003112276.1| 16S rRNA-processing protein RimM [Catenulispora acidiphila DSM
44928]
gi|256356938|gb|ACU70435.1| 16S rRNA processing protein RimM [Catenulispora acidiphila DSM
44928]
Length = 187
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HG+ G+ ++ ++P +R + + L + M + +
Sbjct: 17 LVVGRIGRAHGIRGQATVEVRTDDPELRFAPGSRLLTEPAERGPLVVTDMRFHSGILLLA 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++ LR+ L + D + + +EF++ L + G G++ +
Sbjct: 77 FEGVADRNAVEALRNTILVVE-ADPDETPEDPEEFYDHQLVGLPVELADGTVLGEIADLL 135
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +L +K LIPF K V V++ +I++DP A L+
Sbjct: 136 HLPGQDVLAVKRPDRPEVLIPFIKQFVPVVDVANKRIVVDPPAGLLD 182
>gi|332307107|ref|YP_004434958.1| 16S rRNA processing protein RimM [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174436|gb|AEE23690.1| 16S rRNA processing protein RimM [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 176
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ IG +G+ G V I SY + + Y + + +E+ + + NK +A
Sbjct: 8 LVIGKIGAPYGVKGWVKITSYTDELDGIFSYTPWLVGQEGNTKEIVVDQWRTHNKGLVAK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ A +++L + K Q +L+ DEF+ +L M+ QG G V ++
Sbjct: 68 LVGVETRDDAESIKNLDISIKAQQLP--QLDGDEFYWRELVGMQVVTEQGYNLGVVKELF 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF 145
GA ++ IK ++ F ++P+
Sbjct: 126 ETGANDVMLIKANLKDAFGQKERMVPY 152
>gi|222632582|gb|EEE64714.1| hypothetical protein OsJ_19570 [Oryza sativa Japonica Group]
Length = 644
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 32/188 (17%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR------ELRILKMYR 55
LV++ + HG+ G+V + + P R++ + EL + +
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGD--RPKMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI-----KNTMEKT-------------FLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ ++T+ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDP 164
++ I P
Sbjct: 254 SREMWITP 261
>gi|170723317|ref|YP_001751005.1| 16S rRNA-processing protein RimM [Pseudomonas putida W619]
gi|229564325|sp|B1JDE4|RIMM_PSEPW RecName: Full=Ribosome maturation factor rimM
gi|169761320|gb|ACA74636.1| 16S rRNA processing protein RimM [Pseudomonas putida W619]
Length = 178
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L+ ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGFEICIPRSLLPN--LAADEYYWYQLQGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K ++ L+P+T VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTAQCVLAIDLEAGVMRVE 173
>gi|258543989|ref|ZP_05704223.1| 16S rRNA processing protein RimM [Cardiobacterium hominis ATCC
15826]
gi|258520767|gb|EEV89626.1| 16S rRNA processing protein RimM [Cardiobacterium hominis ATCC
15826]
Length = 182
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRFIA 62
+++ I HG+ G+V + S L +Y + + L++L+ K +A
Sbjct: 8 IIVGRIVGVHGIRGQVKVHSDCRPRESLFQYRQFIARQNGRPDIALQLLRGQTSGKGLVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+GI++ A L LY R + + E++ DL + +RQG G+V +
Sbjct: 68 AFTGINDRDQALALGGYTLYISRDQLPAPQ--DGEYYWADLIGLRVENRQGITLGRVSEL 125
Query: 123 YNFGAGSILEIKNTMEKT-FLIPFTK 147
+ GA IL +K K LIPF +
Sbjct: 126 FETGANDILVVKADNSKAEILIPFVR 151
>gi|310658881|ref|YP_003936602.1| 16S rRNA-processing protein rimm [Clostridium sticklandii DSM 519]
gi|308825659|emb|CBH21697.1| putative 16S rRNA-processing protein rimM [Clostridium sticklandii]
Length = 168
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ I THGL GEV + Y + P +Y+ N + ++ + + I S I
Sbjct: 8 IGKIVNTHGLKGEVKVYPYTDYPERFKEIQYLYMENSDEKISVENVKISKNMVILKLSNI 67
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
I A + R+ L+ R + + +L+EDE DL + +D KY G + V + A
Sbjct: 68 LTIDDAEKNRNNYLFIDRDNAR--KLDEDEHLIADLIGCKVYDVSEKYIGVLEDVLQYSA 125
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ IK+ KT+L+P K V +++ KI+IDPI
Sbjct: 126 NDVYSIKSENGKTYLVPAIKKFVPVIDIDNKKIIIDPI 163
>gi|223039527|ref|ZP_03609815.1| 16S rRNA processing protein RimM [Campylobacter rectus RM3267]
gi|222879323|gb|EEF14416.1| 16S rRNA processing protein RimM [Campylobacter rectus RM3267]
Length = 175
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIA 62
+ +LV +A +G T GL G V + + + P + + Y D EL ++K Y I
Sbjct: 1 MSELVEVALLGKTVGLKGFVRLHNRGDFPNQFKKNAIFYDGDGNEL-VVKNYNSANDTIV 59
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G ++I SA L + +Y +++ K+ +L++ EFF D+ E ++ + G+V
Sbjct: 60 -FCGFEDIDSAKTLTNKTIYTTKEETRKNCKLKKGEFFYFDVIGCEIYENNQR-LGEVED 117
Query: 122 VYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKI 160
+ GA + IK +EK+F IP+ V +V+++ KI
Sbjct: 118 IDEVGANHLFLIKTDGNLIAKGLEKSFYIPYIDVYVEKVDVENKKI 163
>gi|88860522|ref|ZP_01135160.1| 16S rRNA processing protein [Pseudoalteromonas tunicata D2]
gi|88817720|gb|EAR27537.1| 16S rRNA processing protein [Pseudoalteromonas tunicata D2]
Length = 176
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDN-RELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S+ ++P+ D + +++ + +++ R +K FIA
Sbjct: 8 IVVGKLGAPYGIKGWLKVHSFTDDPVGIFDFSPWLIGQQGKWQSFKVVDWRRHSKGFIAK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ ID+ A + +++ + EL + EF+ DL M +G G V +
Sbjct: 68 FANIDDRDQALVYTNAEIFVELSQLP--ELPQGEFYWRDLIGMSVTTDKGYSLGIVDDLM 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L +K F LIPF T +L V+ + +I +D
Sbjct: 126 ETGSNDVLVVKANNNDGFGQAERLIPFLTDTVILNVDAEARQITVD 171
>gi|229086395|ref|ZP_04218571.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
gi|228696911|gb|EEL49720.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
Length = 174
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--Y 54
M+ + K + I THG+ GE+ + S + P + N ++S+ E +K+ +
Sbjct: 1 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWSDKGTEPLPVKITSH 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G N+ + + L + EL E E++ ++ G
Sbjct: 61 RQHKTFDLLTFEGYGNVDEVEKFKGSLLKVPEEQLG--ELAEGEYYYHEIIGCNVVTEDG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 119 EALGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNV-ENKLVTIHVMEGL 173
>gi|312878369|ref|ZP_07738279.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
lactoaceticus 6A]
gi|311794854|gb|EFR11273.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
lactoaceticus 6A]
Length = 169
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 6/169 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
K + + I T GL GEV + + +L +L N + +L I + K+ I
Sbjct: 3 KYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIVII 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I NI A +L++ + +R+ K +L ED +F D+ +E +D G+ G++ V
Sbjct: 63 KFKEISNIDEAQKLKNRYIVIERERAK--KLPEDTYFICDIIGLEVYDLDGRKLGRIKDV 120
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ + + + +K LIP K V EVN++E + I + L+
Sbjct: 121 LKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEEGYMKIKVVEGLLD 169
>gi|228909667|ref|ZP_04073490.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
gi|228849956|gb|EEM94787.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
Length = 171
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ ++ L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKDTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYNNVDEVEKFKGSLIKVPEEQLG--ELSEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|118443705|ref|YP_878283.1| 16S rRNA-processing protein RimM [Clostridium novyi NT]
gi|209573572|sp|A0Q0Y1|RIMM_CLONN RecName: Full=Ribosome maturation factor rimM
gi|118134161|gb|ABK61205.1| 16S rRNA processing protein RimM [Clostridium novyi NT]
Length = 162
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THG+ GE+ + +N D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGIKGEIKVMPSTDNVERFKELNEAYIDGNIVEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A L++ + R++ L+ED ++ D+ +D K G + +
Sbjct: 61 IKGIDSIEDAQRLKNKYIKVSRENAA--TLDEDCYYEADIVGCTVYDENEKQLGNIDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ G+ + IK E LIP K ++++++ KI+I P+
Sbjct: 119 HTGSNDVYWIKGPNE--LLIPAIKSVIVDIDVNNKKIIIKPL 158
>gi|186475535|ref|YP_001857005.1| 16S rRNA-processing protein RimM [Burkholderia phymatum STM815]
gi|209573554|sp|B2JF30|RIMM_BURP8 RecName: Full=Ribosome maturation factor rimM
gi|184191994|gb|ACC69959.1| 16S rRNA processing protein RimM [Burkholderia phymatum STM815]
Length = 231
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKN 57
D V + I +GL G V + ++A+ + R+ L R+ L+
Sbjct: 55 DDAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSTKRWWLEKGRERQSTPCLQSKVHG 114
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A G + +A LR ++Y +R+DF L DE++ DL ++ + G G
Sbjct: 115 DSIVAQLGGTADRDAALALRGHRVYVRRRDFP--ALGTDEYYWVDLVGLDVVNEAGIELG 172
Query: 118 QVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V + + GA S+L I+ + LIPF V V+ KI++D
Sbjct: 173 KVADLIDNGAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVD 226
>gi|240170572|ref|ZP_04749231.1| 16S rRNA-processing protein [Mycobacterium kansasii ATCC 12478]
Length = 177
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMY------RKNKRFIATFS 65
HG+ GE+ ++ ++P NR+ +L + +R+ + Y R +
Sbjct: 11 AHGIGGELVVEIRTDDPD--NRFAPGTLLRAKSSRDPGHERSYVIDSVRDHGARLLVRLV 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + +A LR D E E D +++ LE + G+ G V V +
Sbjct: 69 GVTDRDAADALRGSVFVIDSDDLPPIE-EADTYYDHQLEGLRVRTATGQDVGVVAEVLHT 127
Query: 126 GAGSILEIK---NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
AG +L ++ + E L+PF + V V+L++ + IDP
Sbjct: 128 AAGELLAVRPADGSQEGEVLVPFVRAIVTSVSLEDGVLQIDP 169
>gi|93007145|ref|YP_581582.1| 16S rRNA processing protein RimM [Psychrobacter cryohalolentis K5]
gi|109893037|sp|Q1Q8A5|RIMM_PSYCK RecName: Full=Ribosome maturation factor rimM
gi|92394823|gb|ABE76098.1| 16S rRNA processing protein RimM [Psychrobacter cryohalolentis K5]
Length = 177
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 17 HGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYR-KNKRFIATFSGIDNIHS 72
+G+ G +++ S ++ D+ + + + + +K +R + +A F I + +
Sbjct: 20 YGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQFEQIPDRNV 79
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A + + L+ + QD E EDE++ +DL + + Q +Y G + ++ GA +I+
Sbjct: 80 AETMNGVTLWVE-QDILPEP-AEDEYYWSDLVSLRVMNEQDEYLGDITEMFETGAHAIMR 137
Query: 133 IKNTME----KTFLIPFTKFAVLEVNLQENKILI 162
+ T + + LIP+ K V++V+L E +L+
Sbjct: 138 VAATTDSLDKEERLIPWHKQTVVKVDLTEKTVLV 171
>gi|212716749|ref|ZP_03324877.1| hypothetical protein BIFCAT_01686 [Bifidobacterium catenulatum DSM
16992]
gi|212660453|gb|EEB21028.1| hypothetical protein BIFCAT_01686 [Bifidobacterium catenulatum DSM
16992]
Length = 195
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNK-RF 60
+L+ + IG GL GEV + + + P R+ VLY+ D E +++ R K R+
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEP--EYRFAPGAVLYTKDGEEEYVVENSRTFKNRW 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GIDN + + LY + D +D LE DE++ DL +E + G
Sbjct: 68 IVKFEGIDNRDQSEAANGIVLYGEADDPED-MLEADEWYPKDLIGLEARLAENNMLGLEP 126
Query: 121 GVYNFGAGSILEIKN-----------------TMEKTFLIPFTKFAVLEVNLQENKILID 163
GV ++E+ +E + L+PF V +++L++ + +D
Sbjct: 127 GVVVGKVVDVIEVAQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEKGYLTLD 186
Query: 164 P 164
P
Sbjct: 187 P 187
>gi|253578960|ref|ZP_04856231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849903|gb|EES77862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 167
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 19/169 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEV--YIDSYANNPIDLNRYVLYSNDNRELRILKM----YRKN 57
++ L+ + I TTHG+ GEV Y + A+ +DL YVL RE R L++ Y KN
Sbjct: 1 MEDLLKVGVITTTHGIRGEVKVYPTTDADRFLDLE-YVLLDT-GREKRKLEIENVKYFKN 58
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDF----KDEELEEDEFFNTDLEEMETFDRQG 113
I F GIDNI+ D+++Y KR+ + + +ELEEDE++ DL M+ G
Sbjct: 59 -LVILKFRGIDNIN------DIEMYKKRELWIPREEAQELEEDEYYIADLIGMDVVLEDG 111
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+G + V GA + +++ + L+P + +L+V++++N + I
Sbjct: 112 SKFGTLKDVMETGANDVYVVEDAKGEEILLPAIRECILDVDVEKNVMTI 160
>gi|325295593|ref|YP_004282107.1| ribosome maturation factor rimM [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325066041|gb|ADY74048.1| Ribosome maturation factor rimM [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 188
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 8 VLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRE-LRILKMYRKNKRFIA 62
V++ I HG+ GEV I D + L+ +Y RE L + K+ +I
Sbjct: 24 VMIGKIVGVHGIKGEVKIKPESDIFEKQMEALDLIPVYRGTKREELCVEKLKPYKNLYIV 83
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I++ A E +L+ + K EL E EF+ +DL + F GK G + +
Sbjct: 84 KFKEINDRGEAEERVGGELWIDKN--KQVELGEGEFYFSDLIGSKVFTDDGKEVGILKEI 141
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
AG I E++ + LIPF V +V+++ +I++ I
Sbjct: 142 LEQPAGHIFEVEKSDGSKILIPFISQFVKDVDIENKRIVVSLIEG 186
>gi|295836290|ref|ZP_06823223.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB74]
gi|197697345|gb|EDY44278.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB74]
Length = 235
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + A LR++ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTGAEALRNILLIAEIDPEEVPEDPE-EFYDYQLMDLDVITEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L E + +I+P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLHEQRAVINP 162
>gi|157692281|ref|YP_001486743.1| 16S rRNA-processing protein RimM [Bacillus pumilus SAFR-032]
gi|166985924|sp|A8FD66|RIMM_BACP2 RecName: Full=Ribosome maturation factor rimM
gi|157681039|gb|ABV62183.1| 16S rRNA processing protein [Bacillus pumilus SAFR-032]
Length = 174
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ L++ + +R++K+F +
Sbjct: 8 VGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQGQGEPLKVTVASHRQHKQFDLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF I +++ A L++ L +++ L+E EF+ + E +D + + GQ+ +
Sbjct: 68 TFEEISSLNEAELLKESILKVEKEHLGS--LDEGEFYFHQIIGCEVYDEENQLVGQIKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + + +K LIP+ V ++++ I I+
Sbjct: 126 LTPGANDVWVVGRKGKKDALIPYIPSVVKKIDISSKTIHIE 166
>gi|218898995|ref|YP_002447406.1| 16S rRNA processing protein RimM [Bacillus cereus G9842]
gi|228902345|ref|ZP_04066502.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|228940930|ref|ZP_04103489.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228966787|ref|ZP_04127831.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973859|ref|ZP_04134435.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980449|ref|ZP_04140759.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|226694908|sp|B7IUK1|RIMM_BACC2 RecName: Full=Ribosome maturation factor rimM
gi|218544507|gb|ACK96901.1| 16S rRNA processing protein RimM [Bacillus cereus G9842]
gi|228779269|gb|EEM27526.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|228785884|gb|EEM33887.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792886|gb|EEM40444.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228818766|gb|EEM64832.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228857314|gb|EEN01817.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|326941611|gb|AEA17507.1| 16S rRNA-processing protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 171
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ ++ L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKDTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYNNVDEVEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|114320046|ref|YP_741729.1| 16S rRNA processing protein RimM [Alkalilimnicola ehrlichii MLHE-1]
gi|122312116|sp|Q0AA98|RIMM_ALHEH RecName: Full=Ribosome maturation factor rimM
gi|114226440|gb|ABI56239.1| 16S rRNA processing protein RimM [Alkalilimnicola ehrlichii MLHE-1]
Length = 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRK- 56
M D +V M + HG+ G V + S+ +D + L +D + + + +
Sbjct: 1 MEGADDIVPMGEVVGLHGVRGWVKVYSHTEPREAILDYPHWYLRRDDGDWVPVERTAGRC 60
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F +++ A L++ R+D EL E +++ DLE + + G+
Sbjct: 61 QGKGLVAAFRDVEDRDRARAYIGLQIGVPRRDLP--ELPEGQYYWADLEGLAAYTTGGEP 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V ++ GA +L ++ E+ L+PF V V+L +I +D
Sbjct: 119 LGRVSHLFATGANDVLVLQGDRER--LVPFVYGQTVRRVDLTAGRIELD 165
>gi|296171461|ref|ZP_06852747.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894147|gb|EFG73907.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 173
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 8/162 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+ + HG+ GEV ++ ++P L R+ + R +
Sbjct: 5 VGRVAKAHGIGGEVVVEIRTDDPGARFAPGNTLRGRASRGGGERDFVVESAREHGGRLLL 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ + SA LR D + E D +++ LE + G G V V
Sbjct: 65 RLAGVTDRDSADALRGTVFVVDSDDLPPID-EPDTYYDHQLEGLHVRTVAGHDVGVVAEV 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ AG +L ++ L+PF V V+L + + IDP
Sbjct: 124 LHTAAGELLAVRRGDGGEALVPFVGAIVTSVSLDDRVVEIDP 165
>gi|299821782|ref|ZP_07053670.1| 16S rRNA processing protein RimM [Listeria grayi DSM 20601]
gi|299817447|gb|EFI84683.1| 16S rRNA processing protein RimM [Listeria grayi DSM 20601]
Length = 171
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKN 57
++K+ + I THGL GEV + S + P ++ YV + + + +K +R++
Sbjct: 1 MEKMYKVGKIVNTHGLMGEVRVISTTDFAAERYVPGNILYYVPKTGGSAQPLTIKSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G I+ L++ L K + + + LEE+ ++ ++ +G+
Sbjct: 61 KTFDLLTFEGYTGINQVEHLKEGVL--KVTESQLQPLEENAYYFHEIIGCTVVTTEGETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + GA + ++ +K LIP+ V +++ I I+
Sbjct: 119 GEIKEILTPGANDVWVVETAAKKEILIPYIADVVKTIDIPTKTITIE 165
>gi|227504775|ref|ZP_03934824.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
gi|227198625|gb|EEI78673.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
Length = 174
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 15/171 (8%)
Query: 2 VKLDKLVLM-ATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR---ELRILKM 53
+K++++ LM + +HG+ GE+ +++ + P R+ VL+ + EL I +
Sbjct: 4 IKVEQMELMIGRVIKSHGIKGELSVEATTDEP--EIRFAVGEVLHGRQGKKEHELTIKAV 61
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R + TF + + +A LR + +A D D+ D F++ +LE + G
Sbjct: 62 RVHKGRLLITFEEVKDRTAADSLRGTQFFAPPLDDPDD----DGFYDHELEGLRVI-HDG 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V G+ + S+LE++ K LIPF + V EV+L E I P
Sbjct: 117 NDIGEVTGLTHGPTQSLLEVRLESGKEALIPFVEEIVPEVDLDEGTCTITP 167
>gi|319649587|ref|ZP_08003743.1| 16S rRNA processing protein RimM [Bacillus sp. 2_A_57_CT2]
gi|317398749|gb|EFV79431.1| 16S rRNA processing protein RimM [Bacillus sp. 2_A_57_CT2]
Length = 173
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRI---LKMYRKNKRF-I 61
+ I THG+ GE + S + + N+ L+ D + I +K +R +K F +
Sbjct: 7 VGKIVNTHGIKGEARVISKTDFAEERYKPGNKLYLFMPDTKGDPIELTVKTHRTHKTFDL 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE--EMETFDRQGKYWGQV 119
TF G +NI+ +++ L D LEEDEF+ ++ +ET D G G++
Sbjct: 67 LTFEGYENINGIEKMKGGILKISEDQLGD--LEEDEFYYHEIIGCTVETLD--GAEVGKI 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + GA + IK K LIP+ + V EVN+++ + I+ I L+
Sbjct: 123 KEILSPGANDVWVIKAKGGKEILIPYIEDVVKEVNVKDKLVKINAIEGLLS 173
>gi|260773520|ref|ZP_05882436.1| 16S rRNA processing protein RimM [Vibrio metschnikovii CIP 69.14]
gi|260612659|gb|EEX37862.1| 16S rRNA processing protein RimM [Vibrio metschnikovii CIP 69.14]
Length = 176
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKRFIAT 63
+++ G ++G+ G + + SY +N D + +++ N E ++ R NK +A
Sbjct: 8 IVVGKFGASYGIRGWLKVLSYTDNAESIFDYSPWLVNQNGEWVEYKVESWKRHNKGLVAK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L + ++ EL EDEF+ +L M QG G+V +
Sbjct: 68 LEGLDVREDAHLLTNFEISIDPASLP--ELSEDEFYWRELFGMRVVTTQGYDLGEVVDML 125
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF + V+ +++ +I +D
Sbjct: 126 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKQIDRTAQRIEVD 171
>gi|187933452|ref|YP_001885446.1| 16S rRNA-processing protein RimM [Clostridium botulinum B str.
Eklund 17B]
gi|238691615|sp|B2TJ30|RIMM_CLOBB RecName: Full=Ribosome maturation factor rimM
gi|187721605|gb|ACD22826.1| 16S rRNA processing protein RimM [Clostridium botulinum B str.
Eklund 17B]
Length = 165
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
++++ + I THG+ GEV + D+N++ N D +E I + + R
Sbjct: 1 MEEIFKVGQIVNTHGIKGEVKVYPLTE---DVNKFKKLKNVLIDGKERNIQSVKFQKDRV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I GID ++ A + + R + +LE D + DL +D G++
Sbjct: 58 ILKIEGIDTMNDAETYKQKYIEIFRSNA--PKLEADTHYVVDLVGCMVYDSDNVELGKIF 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
V + + + IK K LIP K VL++N+ KI+I P+
Sbjct: 116 DVISTPSNDVYWIKEP--KQLLIPVLKDIVLDINIDNKKIVIKPV 158
>gi|292491048|ref|YP_003526487.1| 16S rRNA processing protein RimM [Nitrosococcus halophilus Nc4]
gi|291579643|gb|ADE14100.1| 16S rRNA processing protein RimM [Nitrosococcus halophilus Nc4]
Length = 175
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNREL---RILKMYRKNKRF 60
++ VL+ I +G+ G V + SY ++ RY Y N + R+L+ + K
Sbjct: 11 NRYVLIGRISGVYGIQGWVRVYSYTEPRDNILRYEPWYLQQNGKWIARRLLEGRTQGKGI 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ A++ ++ R+ E E E++ DL + QG G+V
Sbjct: 71 VVALDGIDDRDVATQWIGREIAVHREQLPPPE--EGEYYWADLIGLRVITVQGVELGRVE 128
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVL-EVNLQENKILID 163
+ GA +L ++ E+ LIPF K ++ +V+L++ + +D
Sbjct: 129 RLLETGANDVLVVQGERER--LIPFRKDTIVKQVDLEQGLLRVD 170
>gi|209521546|ref|ZP_03270247.1| 16S rRNA processing protein RimM [Burkholderia sp. H160]
gi|209498016|gb|EDZ98170.1| 16S rRNA processing protein RimM [Burkholderia sp. H160]
Length = 244
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRY-VLYSNDNRELRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ +L + R L+ +
Sbjct: 71 VEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGQERRSAPSLQAKTHSDSV 130
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + A LR ++Y R +F LE DEF+ DL ++ + G G+V
Sbjct: 131 VARLGGVADRDVALALRGSRVYISRSEFP--ALEADEFYWVDLIGLDVVNLAGLNLGKVA 188
Query: 121 GVYNFGAGSILEI------KN--TMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA S+L I KN + LIPF V V+ +I++D
Sbjct: 189 SMIDNGAQSVLRIDYPATDKNGKPVAGERLIPFVGVFVKTVDQAAKQIVVD 239
>gi|159904270|ref|YP_001551614.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9211]
gi|238687125|sp|A9BD47|RIMM_PROM4 RecName: Full=Ribosome maturation factor rimM
gi|159889446|gb|ABX09660.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9211]
Length = 176
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI-LKMYRK 56
M + D + + + GL GEV ++ ++ P I+ L N RI LK R+
Sbjct: 1 MSRKDSWLTIGKLVGAQGLRGEVKVNPSSDFPERFINPGERWLQKNTEEPSRIELKSGRQ 60
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQ 112
+I +F GI + + A + KL + +L+E EF DL ++ F +
Sbjct: 61 LPGKSIYIVSFIGITDRNKAESIVGNKLLVPSD--QKPKLKEGEFHLVDLLGLKAKFTQD 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G G+V + + G +L IK KT LIPF K V +NL++ +LI P
Sbjct: 119 GSDVGEVIDLTSAG-NDLLVIKLVEGKTVLIPFVKEIVPVINLKQGWLLIKP 169
>gi|194014273|ref|ZP_03052890.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
gi|194013299|gb|EDW22864.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
Length = 174
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ L++ + +R++K+F +
Sbjct: 8 VGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQGQGEPLKVTVASHRQHKQFDLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF I +++ A L++ L +++ L+E EF+ + E +D + + GQ+ +
Sbjct: 68 TFEEISSLNEAELLKESILKVEKEHLGS--LDEGEFYFHQIIGCEVYDEEDQLVGQIKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + + +K LIP+ V ++++ I I+
Sbjct: 126 LTPGANDVWVVGRKGKKDALIPYIPSVVKKIDIASKTIHIE 166
>gi|116492615|ref|YP_804350.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
gi|122265921|sp|Q03FW4|RIMM_PEDPA RecName: Full=Ribosome maturation factor rimM
gi|116102765|gb|ABJ67908.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
Length = 171
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR-----F 60
+A I T GL GE+ + SY + P + + ++ + E+ + + KN + F
Sbjct: 6 VAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKEYKGSF 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T G+++I+ + + + L + +D LEE EF+ + ++ + K G +
Sbjct: 66 IVTLEGMNSINDVEKFKGMILKVEEDQLQD--LEEGEFYLHQIIGLDVIENDQKI-GTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V ++G + +K + L+P+ K +L V+L++ + + + GL+
Sbjct: 123 EVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQGAVQVS-VPEGLD 171
>gi|325914813|ref|ZP_08177148.1| 16S rRNA processing protein RimM [Xanthomonas vesicatoria ATCC
35937]
gi|325538904|gb|EGD10565.1| 16S rRNA processing protein RimM [Xanthomonas vesicatoria ATCC
35937]
Length = 170
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY ++ S +E + ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRSPSGQETVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F + + + + ++Y R DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPDVTDRDTVEAMHGTEIYVARSALPPPN--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F +F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPEF-VKSVDFEANLIVVD 165
>gi|290957098|ref|YP_003488280.1| 16S rRNA processing protein [Streptomyces scabiei 87.22]
gi|260646624|emb|CBG69721.1| putative 16S rRNA processing protein [Streptomyces scabiei 87.22]
Length = 195
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 9/189 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLLTDPASTGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + + A LR+ L A+ + E E+ E+++ L +++ R G G++ +
Sbjct: 63 FEGVRDRNGAEALRNTLLIAEVDPEELPEEED-EYYDHQLMDLDVVTRDGLEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN----TTMKNPQY 179
+ + + ++ +IPF + V E++L E + +IDP +++ + ++
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVESIVTEIDLTEQRAVIDPPPGLIDDRAEIASARDAAE 181
Query: 180 DCPLDSAGK 188
+ DSAG
Sbjct: 182 ESTTDSAGP 190
>gi|302522159|ref|ZP_07274501.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB78]
gi|302431054|gb|EFL02870.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB78]
Length = 236
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNTLLIAETDPEEVPEDPE-EFYDYQLMDLDVVTEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L E + +I+P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINP 162
>gi|257055029|ref|YP_003132861.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
gi|256584901|gb|ACU96034.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
Length = 174
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--------LYSNDNRELRILKMYRKNKR 59
V++ I HG+ GEV +D ++P R+ + R L + + R
Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSP--EERFAPETVLTGKMRDGRTRPLTVAAVRPHGGR 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + + +A E+R L + + + DEF++ +LE + G G V
Sbjct: 61 LLVRFLEVPDRTAAEEIRGATLLIDVDELPPID-DPDEFYDHELEGLRAELDDGTVVGTV 119
Query: 120 CGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G +L + ++ + L+PF V V + +I++DP
Sbjct: 120 REVVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDP 167
>gi|229162778|ref|ZP_04290735.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
gi|228620660|gb|EEK77529.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
Length = 171
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ ++ L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKDTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T G +N+ +L+ + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTLEGYNNVDEVEKLKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|220912967|ref|YP_002488276.1| 16S rRNA-processing protein RimM [Arthrobacter chlorophenolicus A6]
gi|219859845|gb|ACL40187.1| 16S rRNA processing protein RimM [Arthrobacter chlorophenolicus A6]
Length = 181
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG HG+ GEV + + P D +V+ + L + + F
Sbjct: 5 VARIGKPHGIRGEVTVQVMTDAPGDRFVPGVEFVVEPAQSGPLTVSSARWNKDILLLAFE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQVCGVYN 124
I++ + A LR KL+ + + +++ ED ++ +L +E R G G+V +
Sbjct: 65 EIEDRNQAETLRGAKLFIETAELDEDD--EDGWYEHELVGLEA--RVGSTVVGKVTALNT 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +L + + LIPF + V EVN+ E IL+ P
Sbjct: 121 APAQDLLMVTTPDGEEILIPFVEQIVPEVNVGEGYILLTP 160
>gi|225180941|ref|ZP_03734389.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
gi|225168422|gb|EEG77225.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
Length = 169
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELR-ILKMYRKNKR 59
+++ V + + TTHG+ G + + ++NP +L R + + + R +++ + +
Sbjct: 1 MEQSVAIGKVVTTHGVKGGMKVQPLSDNPERIKELIRVFVEKDGHSAARDVVEAFVHGRA 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ GID+ +A EL L + L E+ ++ + ++ + G Y G +
Sbjct: 61 WVIRLEGIDSCDAARELVGAMLTIPISERL--PLPENSYYLDQIIGLDVYTVDGTYLGSI 118
Query: 120 CGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
V G+ + ++N + + LIP K V ++L ++ +DP
Sbjct: 119 INVLETGSNDVYVVENKADGRQVLIPALKAVVKSIDLDTGRMEVDP 164
>gi|284032645|ref|YP_003382576.1| 16S rRNA processing protein RimM [Kribbella flavida DSM 17836]
gi|283811938|gb|ADB33777.1| 16S rRNA processing protein RimM [Kribbella flavida DSM 17836]
Length = 182
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
LV + IG HG+ GEV +D + P D V + R L + + R +
Sbjct: 2 LVTVGRIGRAHGIKGEVGLDVRTDEPDRRFADGATLVTDTKPPRTLTVESSRWHSGRLLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + +A +LR+L L A+ + + E E E+++ +L + G+ G+V V
Sbjct: 62 KFVESPDRTAAEQLRNLVLQAEIAEDERPEDPE-EYYDRELIGLSVRTTDGEQAGEVIDV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + +LEI+ L+P + V +++L E +L+
Sbjct: 121 VHLPSQDLLEIRRPAGNAVLVPLVEQLVPKIDLDEKYVLV 160
>gi|71066572|ref|YP_265299.1| 16S rRNA processing protein RimM [Psychrobacter arcticus 273-4]
gi|109893036|sp|Q4FQ43|RIMM_PSYA2 RecName: Full=Ribosome maturation factor rimM
gi|71039557|gb|AAZ19865.1| 16S rRNA processing protein RimM [Psychrobacter arcticus 273-4]
Length = 177
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 17 HGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKR-FIATFSGIDNIHS 72
+G+ G +++ S ++ D+ + + + + +K +R+ +A F I + +
Sbjct: 20 YGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWRQQGTGVVAQFEQIPDRNV 79
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A + + L+ + QD E EDE++ +DL + + Q +Y G + ++ GA +I+
Sbjct: 80 AETMNGVTLWVE-QDILPEP-AEDEYYWSDLVTLRVINEQDEYLGDITEMFETGAHAIMR 137
Query: 133 IKNTME----KTFLIPFTKFAVLEVNLQENKILI 162
+ T + + LIP+ K V++V+L E +L+
Sbjct: 138 VAATSDSLDKEERLIPWHKQTVVKVDLTEKTVLV 171
>gi|251779615|ref|ZP_04822535.1| 16S rRNA processing protein RimM [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243083930|gb|EES49820.1| 16S rRNA processing protein RimM [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 165
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNK 58
++++ + I THG+ GEV + D+N++ VL ++R ++ +K +
Sbjct: 1 MEEIFKIGQIVNTHGIKGEVKVYPLTE---DVNKFKKLKTVLIDGEDRNIQSVKFQK--D 55
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R I GID ++ A + + R + ELE D + DL +D G+
Sbjct: 56 RVILKIEGIDTMNDAETYKQKYIEIFRSNAP--ELEADTHYIVDLIGCMVYDADNMELGK 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ V + + + IK K LIP K VL+++++ KI++ P+
Sbjct: 114 IFDVISTPSNDVYWIKQP--KELLIPVLKDIVLDIDIENKKIVVKPV 158
>gi|213964701|ref|ZP_03392901.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
gi|213952894|gb|EEB64276.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
Length = 169
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI-LKMYRKNK-RFI 61
+VL+ + HG+ GEV +D+ ++P + +L RE ++ +K R ++ R +
Sbjct: 6 MVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTTLLGVQAGREEQLTVKTARPHQGRLL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F I + A R +K YA+ F+DE +F++ +L + G G+V
Sbjct: 66 VRFEEIPGRNEAERHRGMKFYAE-PVFEDE-----DFYDFELVGLHVV-HNGTDIGEVTS 118
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ A +LE+ + + LIP + V EV+L+ + + I P
Sbjct: 119 IVRAPAHRLLEVTLDAGGREVLIPLVEEIVPEVDLENSTVTITP 162
>gi|313896374|ref|ZP_07829927.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975173|gb|EFR40635.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
Length = 175
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+++ +G HG+ G+V + + P R + L I++M + K F+ F
Sbjct: 13 IVIGRVGAPHGIAGDVRVIPLTDFPERFARLREVVVGDELLHIVRMKEQGKNFLMQFREY 72
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
A L L R D LEE E++ D+ + +D G G V V G+
Sbjct: 73 PVREEAQRLTGRLLTVARTDAA--PLEEGEYYVFDIVGLSVYDEAGTLLGSVENVIRTGS 130
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ ++ + LIP + V +++ ++
Sbjct: 131 NDVYAVRAEDGRELLIPALRSVVRNIDIAGGRM 163
>gi|188588501|ref|YP_001920593.1| 16S rRNA-processing protein RimM [Clostridium botulinum E3 str.
Alaska E43]
gi|238689674|sp|B2V4E4|RIMM_CLOBA RecName: Full=Ribosome maturation factor rimM
gi|188498782|gb|ACD51918.1| 16S rRNA processing protein RimM [Clostridium botulinum E3 str.
Alaska E43]
Length = 165
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNK 58
++++ + I THG+ GEV + D+N++ VL ++R ++ +K +
Sbjct: 1 MEEIFKIGQIVNTHGIKGEVKVYPLTE---DVNKFKKLKTVLIDGEHRNIQSVKFQK--D 55
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R I GID ++ A + + R + ELE D + DL +D G+
Sbjct: 56 RVILKIEGIDTMNDAETYKQKYIEIFRSNAP--ELEADTHYIVDLIGCMVYDADNMELGK 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ V + + + IK K LIP K VL+++++ KI++ P+
Sbjct: 114 IFDVISTPSNDVYWIKQP--KELLIPVLKDIVLDIDIENKKIVVKPV 158
>gi|227503361|ref|ZP_03933410.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
gi|227075864|gb|EEI13827.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
Length = 165
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL-------YSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GEV ++ + P R+ + EL I + R
Sbjct: 3 LMIGRVIKSHGIKGEVVVEPTTDEP--EVRFAVGEKLQGRQGRKEHELTISAVRSHKGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T I + A LR + +A + DE F++ +LE + R G+ G V
Sbjct: 61 LVTCKEIADRTQADSLRGTQFFAAPLEDDDEG-----FYDHELEGLRVI-RDGEDIGAVV 114
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + +LE++ + + L+PF V EV+++ I+P
Sbjct: 115 SVVHGPSQDLLEVELSTGSSALVPFVHAIVPEVDVEAGTCTIEP 158
>gi|323702670|ref|ZP_08114331.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
gi|323532333|gb|EGB22211.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
Length = 169
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
++ + + I T G+ GEV + + P + ++L R+L I + + +
Sbjct: 3 EEFITVGEIVNTQGIRGEVRVLPTTDFPERFKQTKKIFLLLQGQRRQLTINRAWEHKQFI 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F + ++ A +L+ L R + D L +D ++ ++ ++ D +G+ G+V
Sbjct: 63 ILKFDEVADMSEAEKLKGGLLQVPRTELTD--LPKDCYYIFEIVGLKVIDERGQELGKVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL 155
V GA + +K K LIP K V ++++
Sbjct: 121 DVLRTGANDVYVVKRDQGKDILIPALKSVVKKIDV 155
>gi|269977897|ref|ZP_06184851.1| 16S rRNA processing protein RimM [Mobiluncus mulieris 28-1]
gi|306819236|ref|ZP_07452947.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35239]
gi|269933863|gb|EEZ90443.1| 16S rRNA processing protein RimM [Mobiluncus mulieris 28-1]
gi|304648018|gb|EFM45332.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35239]
Length = 196
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSN--DNRELRILKMYRKNKRFI 61
V +AT+G G+ GE+ + +NP R+ VL ++ D L + + K F+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNP--HTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFV 60
Query: 62 ATFSGIDNIHSASELRDLKLY------AKRQDFKDEEL------EEDEFFNTDLEEMETF 109
A+F I + +A L +KL A DE ED F+ +L +
Sbjct: 61 ASFKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQ 120
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G+ G V + A +LE+ LIPF V EV+L ++++ P
Sbjct: 121 TQTGESLGMVSDLIIGTAQDLLEVTTAEGHKVLIPFVFELVPEVDLAAGRVVMAP 175
>gi|291615193|ref|YP_003525350.1| 16S rRNA processing protein RimM [Sideroxydans lithotrophicus ES-1]
gi|291585305|gb|ADE12963.1| 16S rRNA processing protein RimM [Sideroxydans lithotrophicus ES-1]
Length = 166
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRKN----KR 59
+V+M + G+ G V + + Y ++ +D + + Y + + R L++ N K
Sbjct: 1 MVVMGKVVGAQGIQGWVKVQAFTEYLDSLLDYSTW--YVGNEQSWRPLEVLEANVHGGKV 58
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA GI + +A + + L + R +++ E E++ +DL + + G+ +G V
Sbjct: 59 LIAKLQGIVDRTAAEKCKGLLIAVPRDSLPEQQ--EGEYYWSDLIGLSVENLAGEKFGTV 116
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K +T L+PF + +V+LQ I +D
Sbjct: 117 DSLLETGANDVLVVKGEGGET-LMPFIASVIRQVDLQNKLIRVD 159
>gi|320530765|ref|ZP_08031809.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
gi|320137052|gb|EFW28990.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
Length = 175
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+++ +G HG+ G+V + + P R + L I++M + K F+ F
Sbjct: 13 IVIGRVGAPHGIAGDVRVIPLTDFPERFARLREVVVGDELLHIVRMKEQGKNFLMQFREY 72
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
A L L R D LEE E++ D+ + +D+ G G V V G+
Sbjct: 73 PVREEAQRLTGRLLTVARTDAA--PLEEGEYYVFDIVGLSVYDKAGTLLGSVENVIRTGS 130
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ ++ + LIP V +++ ++
Sbjct: 131 NDVYAVRAEDGRELLIPALHSVVRNIDIAGGRM 163
>gi|152976208|ref|YP_001375725.1| 16S rRNA-processing protein [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189040125|sp|A7GRH2|RIMM_BACCN RecName: Full=Ribosome maturation factor rimM
gi|152024960|gb|ABS22730.1| 16S rRNA processing protein RimM [Bacillus cytotoxicus NVH 391-98]
Length = 171
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I THG+ GEV + S + P + N ++ E +K+ +R++K F +
Sbjct: 7 VGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQHKTFDLL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G N++ + + L + EL E E++ ++ + G+ G + +
Sbjct: 67 TFEGYSNVNEVEKFKGSLLKVPEEQLG--ELAEGEYYYHEVIGCKVVTENGEELGTITEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA + IK + LIP+ VL+VN+++ ++ I
Sbjct: 125 LSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQKQVTI 164
>gi|94270959|ref|ZP_01291860.1| 16S rRNA processing protein RimM [delta proteobacterium MLMS-1]
gi|93450603|gb|EAT01724.1| 16S rRNA processing protein RimM [delta proteobacterium MLMS-1]
Length = 184
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRE----LRILKMYRKNKR 59
D L+ + + G+ GE+ I Y+ P D Y L+ D +L
Sbjct: 12 DDLLAVGRVVKPQGIKGEIKIVPYSGRPADFREYHRLWPADGEAPGGGWELLATRESGGA 71
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA +GI + +A LR L + +D E + L+ + D QG+ G V
Sbjct: 72 VIARLAGIADRDAAEALRGRPLAIRSRDLPPA--PAGELYWHQLQGLPARDEQGREIGTV 129
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIP 144
G+ A + I + + L+P
Sbjct: 130 VGLLATPARPTMVIADGAGREILVP 154
>gi|330872810|gb|EGH06959.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 179
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L + +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKDLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|300811726|ref|ZP_07092200.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497302|gb|EFK32350.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 167
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I THGL GEV + + P D R + +D+RE+ + + ++ TF+
Sbjct: 6 VGKIIATHGLKGEVKVALTTDFPEDRFRTGSRLYLGDDSREVTVAAGRPFKQFWLVTFAE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I A +L+ ++ +D EL + ++ DL + D + G+ G++ +
Sbjct: 66 ITDIDQAKKLKGTEILISEED--QGELPDGVYYYRDLLGCKVLDDESGEEIGELTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I E+ + K+F +P+ V V++ + ++ ++
Sbjct: 124 GANDIWEVTDEDGKSFWLPYIPQVVKSVDIDKKEVRVE 161
>gi|294339610|emb|CAZ87969.1| putative 16S rRNA processing protein RimM [Thiomonas sp. 3As]
Length = 180
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 15/174 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVL----YSNDNRELRILKM 53
M D L L+ I G+ G V + A L + + L + N+ + + +
Sbjct: 1 MAIPDNLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +A G ++ A LR ++ +R DF + E EF+ DL E +G
Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPPD--EGEFYWADLIGCEVRSPEG 118
Query: 114 KYWGQVCGVYNFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G+V G+ A ++L ++ + + LIPF + ++ V+L I+
Sbjct: 119 ADLGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIVSVDLPAKTII 172
>gi|296135504|ref|YP_003642746.1| 16S rRNA processing protein RimM [Thiomonas intermedia K12]
gi|295795626|gb|ADG30416.1| 16S rRNA processing protein RimM [Thiomonas intermedia K12]
Length = 180
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 15/174 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVL----YSNDNRELRILKM 53
M D L L+ I G+ G V + A L + + L + N+ + + +
Sbjct: 1 MAIPDDLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +A G ++ A LR ++ +R DF + E EF+ DL E +G
Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPPD--EGEFYWADLIGCEVRSPEG 118
Query: 114 KYWGQVCGVYNFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G+V G+ A ++L ++ + + LIPF + ++ V+L I+
Sbjct: 119 ADLGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIVSVDLPAKTII 172
>gi|227875956|ref|ZP_03994079.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35243]
gi|227843488|gb|EEJ53674.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35243]
Length = 196
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSN--DNRELRILKMYRKNKRFI 61
V +AT+G G+ GE+ + +NP R+ VL ++ D L + + K F+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNP--HTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFV 60
Query: 62 ATFSGIDNIHSASELRDLKLY------AKRQDFKDEEL------EEDEFFNTDLEEMETF 109
A+F I + +A L +KL A DE ED F+ +L +
Sbjct: 61 ASFKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQ 120
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G+ G V + A +LE+ LIPF V EV+L ++++ P
Sbjct: 121 TQTGESLGMVSDLIIGTAQDLLEVTTADGHKVLIPFVFELVPEVDLAAGRVVMAP 175
>gi|295693162|ref|YP_003601772.1| ribosome maturation factor rimm [Lactobacillus crispatus ST1]
gi|295031268|emb|CBL50747.1| Ribosome maturation factor rimM [Lactobacillus crispatus ST1]
Length = 171
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A I TTHGLNGEV + + P D + ++ + ++ + R K+F + F+
Sbjct: 6 VARILTTHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEADRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVE 162
>gi|116490847|ref|YP_810391.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290890293|ref|ZP_06553372.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
gi|122276971|sp|Q04FP6|RIMM_OENOB RecName: Full=Ribosome maturation factor rimM
gi|116091572|gb|ABJ56726.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290480079|gb|EFD88724.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
Length = 166
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF-IATFSGIDNIH 71
THG+ GE+ ID + P N +L + E +++ R K+F + FS +NI+
Sbjct: 12 THGIAGELKIDFNTDFPEQRFAKNSELLIAG---EKLVVQSSRPFKQFWLVKFSDHENIN 68
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
+ + ++ + K+ L E EF + + ++ D +G G++ ++ GA +
Sbjct: 69 LVEKYKGEDIFINER--KEPRLSEGEFLVSQIIGLKVIDEKGNSIGEIADSFHTGANDVW 126
Query: 132 EIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
IK + K LIP+ V +V+LQ + + I+
Sbjct: 127 TIKKSNGKEILIPYIDQVVKKVDLQTSTVTIE 158
>gi|254821201|ref|ZP_05226202.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare ATCC
13950]
Length = 171
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 16 THGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
HG+ GE+ ++ ++P L R+ + R + +GI
Sbjct: 11 AHGIGGEIVVEIRTDDPDARFATGNALRGKASRGGGERDFVVESAREHGGRLLVRLAGIS 70
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR D + E D +++ +LE + G+ G V V + AG
Sbjct: 71 DRDAADALRGTLFVVDSDDLPPID-EADTYYDHELEGLHVRTITGRDVGVVAEVLHTAAG 129
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+L ++ + L+PF V V+L + I IDP
Sbjct: 130 ELLAVRRESGEA-LVPFVTAIVTSVSLDDGTIEIDP 164
>gi|307700242|ref|ZP_07637283.1| 16S rRNA processing protein RimM [Mobiluncus mulieris FB024-16]
gi|307614624|gb|EFN93852.1| 16S rRNA processing protein RimM [Mobiluncus mulieris FB024-16]
Length = 196
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSN--DNRELRILKMYRKNKRFI 61
V +AT+G G+ GE+ + +NP R+ VL ++ D L + + K F+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNP--HTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFV 60
Query: 62 ATFSGIDNIHSASELRDLKLY------AKRQDFKDEEL------EEDEFFNTDLEEMETF 109
A+F I + +A L +KL A DE ED F+ +L +
Sbjct: 61 ASFKEIPDRDTAETLGGVKLVIETDPEATNPPGSDETPGATESGSEDGFYRHELVGLSAQ 120
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G+ G V + A +LE+ LIPF V EV+L ++++ P
Sbjct: 121 TQTGESLGMVSDLIIGTAQDLLEVTTADGHKVLIPFVFELVPEVDLAAGRVVMAP 175
>gi|221632147|ref|YP_002521368.1| 16S rRNA processing protein RimM [Thermomicrobium roseum DSM 5159]
gi|221155506|gb|ACM04633.1| 16S rRNA processing protein RimM [Thermomicrobium roseum DSM 5159]
Length = 184
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 5/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
++L + +G HG+ G V + + + P I YV + R+L+ +
Sbjct: 19 ERLSIGRIVGA-HGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFL 77
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI + A +R + + R + L EDE++ ++ ++ D G G+V +
Sbjct: 78 QLEGITTRNEAEAMRGVVVRIDRS--QAAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEI 135
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GA + ++ L+P + +L V+L++ ++++ P
Sbjct: 136 LETGANDVYVVQRPDGSELLLPAIRSVILAVDLEQQRLVVRP 177
>gi|206972753|ref|ZP_03233683.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218235147|ref|YP_002368643.1| 16S rRNA-processing protein RimM [Bacillus cereus B4264]
gi|228922596|ref|ZP_04085896.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954118|ref|ZP_04116147.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960058|ref|ZP_04121722.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047529|ref|ZP_04193119.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|229071340|ref|ZP_04204563.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|229081097|ref|ZP_04213607.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|229111313|ref|ZP_04240866.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|229129118|ref|ZP_04258091.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|229146413|ref|ZP_04274784.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|229152041|ref|ZP_04280236.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|229180118|ref|ZP_04307462.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|229192011|ref|ZP_04318981.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|296504337|ref|YP_003666037.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
gi|33301480|sp|Q819W5|RIMM_BACCR RecName: Full=Ribosome maturation factor rimM
gi|226694909|sp|B7HDW5|RIMM_BACC4 RecName: Full=Ribosome maturation factor rimM
gi|206732318|gb|EDZ49510.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218163104|gb|ACK63096.1| 16S rRNA processing protein RimM [Bacillus cereus B4264]
gi|228591562|gb|EEK49411.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|228603327|gb|EEK60804.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|228631390|gb|EEK88024.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|228637046|gb|EEK93505.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|228654355|gb|EEL10220.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|228672089|gb|EEL27380.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|228702141|gb|EEL54617.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|228711794|gb|EEL63746.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|228723776|gb|EEL75131.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|228799574|gb|EEM46527.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805684|gb|EEM52274.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228837025|gb|EEM82366.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325389|gb|ADH08317.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
Length = 171
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKGTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ + + + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYNNVDEVEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|302542207|ref|ZP_07294549.1| 16S rRNA processing protein RimM [Streptomyces hygroscopicus ATCC
53653]
gi|302459825|gb|EFL22918.1| 16S rRNA processing protein RimM [Streptomyces himastatinicus ATCC
53653]
Length = 191
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L I + R +
Sbjct: 11 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPASAGPLTIETGRVHSGRLLLR 70
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR++ L A+ D ++ + +EF++ L +++ G G++ +
Sbjct: 71 FEGVRDRTGAEALRNVLLIAE-VDPEEVPEDPEEFYDHQLIDLDVVTVDGTAVGRISEIS 129
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ +L +K +IPF V E++L+E + ++DP
Sbjct: 130 HLPYQDLLIVKRPDGGEVMIPFVSEMVPEIDLEEQRAVVDP 170
>gi|225620955|ref|YP_002722213.1| putative RimM protein, required for 16S processing [Brachyspira
hyodysenteriae WA1]
gi|225215775|gb|ACN84509.1| putative RimM protein, required for 16S processing [Brachyspira
hyodysenteriae WA1]
Length = 168
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 7 LVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
++ A I HGL GEV + SY + L++ +N+ +L + +KNK F+
Sbjct: 1 MIFYAKITGLHGLKGEVEMAFTDKSYFTSLPVLSKNTPVIINNQTFTLLNVKKKNKSFVF 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
I+ I A +L L ++ L++D F+ +L + D +G++ V
Sbjct: 61 QLKDINTIDQAEKLIGLDIFIDSSHL--PILDDDTFYEAELIGYKIIDTDNNVYGEITDV 118
Query: 123 YNFGAGSILEIKNTMEKTFL-IPFTK 147
Y+ + + EIK + IPF K
Sbjct: 119 YSLPSNYVFEIKLKENNNIVSIPFVK 144
>gi|217967917|ref|YP_002353423.1| 16S rRNA processing protein RimM [Dictyoglomus turgidum DSM 6724]
gi|217337016|gb|ACK42809.1| 16S rRNA processing protein RimM [Dictyoglomus turgidum DSM 6724]
Length = 166
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSND---NRELRILKMYRKNKR 59
+V +A +G G+ G + I + + L + Y+ + + REL + + NK
Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIDTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ FS I+ A ++R L + +D +L E +++ + + ++ G+Y G+V
Sbjct: 61 YVIYFSEIETREDAEKIRGNWLLIEEEDLP--KLPEGQYYTYQIMGLSVYEESGEYLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + ++ E + IP K ++E+NL E KI+I
Sbjct: 119 KEILETGSNDVYIVEGEDEDIY-IPAIKDVIVEINLDEGKIII 160
>gi|145588705|ref|YP_001155302.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|209573589|sp|A4SW74|RIMM_POLSQ RecName: Full=Ribosome maturation factor rimM
gi|145047111|gb|ABP33738.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 188
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNR--------------- 46
LD L+ + I GL G+V + ++ +P+ L ++ V S R
Sbjct: 6 LDNLIELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTEEATLT 65
Query: 47 --ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
+++ KM+ N + T G+ + A L+ ++ R F + E D ++ DL
Sbjct: 66 QYKVKSAKMHSGN--VVLTLDGVSDRDQALALKGARILLDRDAFP--KAESDSYYWVDLI 121
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKIL 161
+ + Q + G V V GA ++ I + KT +L+PF K V V+L NK+L
Sbjct: 122 GCKAKNLQDEILGDVIDVTENGAHGVIAIGDISTKTIQYLVPFVKEVVRNVDL-PNKLL 179
>gi|227551891|ref|ZP_03981940.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257895518|ref|ZP_05675171.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|293378383|ref|ZP_06624552.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
gi|293570324|ref|ZP_06681384.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|227178963|gb|EEI59935.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257832083|gb|EEV58504.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|291609603|gb|EFF38865.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|292643247|gb|EFF61388.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
Length = 174
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 13/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L+ + + + +K +RK+K F +
Sbjct: 7 VGKIVNTQGIKGEVRVISTTDFPEE--RYKKGTVLTLFQDGKAPIELTVKSHRKHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + RD L + + D L+E+EF+ ++ + + G G+V
Sbjct: 65 LSFEGHPSINDVEKYRDGILKVSKDNSVD--LDENEFYYHEIIGLRVVEEDGTELGKVKE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ + L+P+ V EV+L+ I ++ I GL
Sbjct: 123 ILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVIRVE-IPEGL 169
>gi|318056566|ref|ZP_07975289.1| 16S rRNA-processing protein RimM [Streptomyces sp. SA3_actG]
gi|318077468|ref|ZP_07984800.1| 16S rRNA-processing protein RimM [Streptomyces sp. SA3_actF]
Length = 235
Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNTLLIAEIDPEEVPEDPE-EFYDYQLMDLDVVTEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L E + +I+P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINP 162
>gi|326791388|ref|YP_004309209.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
gi|326542152|gb|ADZ84011.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
Length = 173
Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--------IDLNRYVLYSNDNRELRILKMYR 55
++++ ++ I THG+ GE+ + ++P I + R L S + + +R Y
Sbjct: 1 MNEMFIVGKIVNTHGVKGELKVMPSTDDPTRFEQLKEIYVERKKLESYEIQSVR----YH 56
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME--TFDRQG 113
K + GID++ +A + L R+D LEEDE++ DL M+ T+D +
Sbjct: 57 KG-MVLLKLKGIDDMTTAELFKGALLKIDRKD--SLPLEEDEYYIADLYGMQVYTYDEE- 112
Query: 114 KYWGQVCGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+Y G++ V G+ + + K K L+P K + V++++NK+ +
Sbjct: 113 RYLGEIVDVIYTGSNDVYAVRKEDRAKDLLLPAIKQVIKSVDVKQNKMHV 162
>gi|22298609|ref|NP_681856.1| 16S rRNA-processing protein [Thermosynechococcus elongatus BP-1]
gi|32129963|sp|Q8DK05|RIMM_THEEB RecName: Full=Ribosome maturation factor rimM
gi|22294789|dbj|BAC08618.1| tlr1065 [Thermosynechococcus elongatus BP-1]
Length = 183
Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRIL----KMY 54
++ + + + I HGL GEV + +++ P + R++ + + +
Sbjct: 7 EVSEWLCIGQIVGAHGLRGEVKVKPFSDFPERFTVPGCRWLRSPRQPQPYAVTLLRGRFL 66
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ ++F+ TF+ I + +A L+ ++ D L +E+ DL + + QG+
Sbjct: 67 PRAEQFVVTFAEISDRTAAEALKGAEILVPASD--RPPLAANEYHLMDLIGLAVY-HQGE 123
Query: 115 YWGQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V G+ N G +LE++ ++ IPF V V+L +I IDP
Sbjct: 124 RVGEVVGLVNAG-NDLLEVQLLDPAPKAPQSVYIPFVPAIVPVVDLAARRIEIDP 177
>gi|312793160|ref|YP_004026083.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180300|gb|ADQ40470.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 169
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + +L +L N + +L I + K+
Sbjct: 1 MHKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ + +R+ K +L ED +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISSIDEAQKLKNRYIVIERERAK--KLPEDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEEGYMKIKVVEGLLD 169
>gi|333024168|ref|ZP_08452232.1| putative 16S rRNA-processing protein RimM [Streptomyces sp. Tu6071]
gi|332744020|gb|EGJ74461.1| putative 16S rRNA-processing protein RimM [Streptomyces sp. Tu6071]
Length = 236
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNTLLIAEIDPEEVPEDPE-EFYDYQLMDLDVVTEDGQEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L E + +I+P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINP 162
>gi|26988196|ref|NP_743621.1| 16S rRNA-processing protein RimM [Pseudomonas putida KT2440]
gi|37999637|sp|Q88MV5|RIMM_PSEPK RecName: Full=Ribosome maturation factor rimM
gi|24982933|gb|AAN67085.1|AE016337_8 16S rRNA processing protein RimM [Pseudomonas putida KT2440]
gi|313500312|gb|ADR61678.1| RimM [Pseudomonas putida BIRD-1]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIPRSLLPN--LAADEYYWYQLVGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQ 156
V + GA ++ +K ++ L+P+T+ VL ++L+
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLE 166
>gi|282855358|ref|ZP_06264684.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
gi|282586819|gb|EFB92061.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
Length = 175
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR--ELRILKMYRKNKR--F 60
V++ + THGL GE+ I + P ++ Y + R+ M R F
Sbjct: 7 VVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRDGKHAGSYRVTGMRDALTRGCF 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEE--LEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G++ I A LR + + DE L EF+ +DL +E D +G G
Sbjct: 67 LAALEGVETIEQAELLRGCSV----EIAPDERVPLAPGEFWISDLIGLEACDDRGSKLGV 122
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V + + GA ++ +++ K LIP +L +L+ ++ +
Sbjct: 123 VKDIVDSGASQLVVVRDDGGKDHLIPAAPEFLLGADLEARRVTL 166
>gi|256843366|ref|ZP_05548854.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|293381188|ref|ZP_06627196.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
gi|256614786|gb|EEU19987.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|290922228|gb|EFD99222.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
Length = 171
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A I TTHGLNGEV + + P D + ++ + ++ + R K+F + F+
Sbjct: 6 VARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEADRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVE 162
>gi|256822054|ref|YP_003146017.1| 16S rRNA processing protein RimM [Kangiella koreensis DSM 16069]
gi|256795593|gb|ACV26249.1| 16S rRNA processing protein RimM [Kangiella koreensis DSM 16069]
Length = 173
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
K +++ + G+ G V + SY + ++ Y + +++ I+ + K +
Sbjct: 6 KPLIVGKLNGASGIKGWVKVFSYTDPKENILNYSPWYLKLDGQWQQVLIINGREQGKTVV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G ++ ++A R +++ +LEE E++ DL + + G G V
Sbjct: 66 AQLEGCNDRNTAESYRGVEIAIDESQLP--QLEEGEYYWRDLVGLTVVNVAGDEMGTVEK 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
+ GA +L +K ++ LIP+ +++V++V+L+ +I +D
Sbjct: 124 MMETGANDVLVVKTASKEELLIPYVPEYSVIKVDLESKQITVD 166
>gi|332638246|ref|ZP_08417109.1| 16S rRNA processing protein, RimM [Weissella cibaria KACC 11862]
Length = 167
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA-TF 64
+ TI THG+ GEV + + + P + N+ ++ E+ I + R +K+F+ +F
Sbjct: 6 VGTIVNTHGIRGEVRVIATTDFPEERFAKGNKLIIDGKSPVEVEIATV-RNHKQFVLLSF 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
+ NI+ + + L + +D L EDEF+ ++ ++ D G+ G+V +
Sbjct: 65 KDLQNINLVEQYKTHDLMVPEEALQD--LAEDEFYYHEIVGLDVIDNATGQVLGKVAEIM 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL 155
A + +K + IP+ + V E++L
Sbjct: 123 ELPANDVWVVKAKGQDDLFIPYIENVVTEIDL 154
>gi|148549464|ref|YP_001269566.1| 16S rRNA-processing protein RimM [Pseudomonas putida F1]
gi|166226468|sp|A5W8C2|RIMM_PSEP1 RecName: Full=Ribosome maturation factor rimM
gi|148513522|gb|ABQ80382.1| 16S rRNA processing protein RimM [Pseudomonas putida F1]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIPRSLLPN--LAADEYYWYQLVGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K ++ L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHMLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLEAGVMRVE 173
>gi|330807706|ref|YP_004352168.1| 16S rRNA processing protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375814|gb|AEA67164.1| Putative 16S rRNA processing protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
D L+++ I + HG+ GEV + S+ + N +D + L + + L R N +F
Sbjct: 9 DDLIVVGKIYSVHGVRGEVKVYSFTDPIKNLLDYKTWTLKREGSVKQVELVSGRGNDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A +D+ A L ++ R F EL + E++ L ++ D G+ G++
Sbjct: 69 VAKLKDLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLVGLKVIDHLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + ++ L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGSNDVMVVKPCVGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|315038604|ref|YP_004032172.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
gi|312276737|gb|ADQ59377.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
Length = 171
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 6 VAKILTTHGLNGEVKVNVITDFPEDRFAEGMQLALKADTDRILTIKKSRPFKQFWLLQFD 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EVNDIDEAEKLRGQILVVSEDNRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVSNKKVYVE 162
>gi|220917153|ref|YP_002492457.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955007|gb|ACL65391.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-1]
Length = 164
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 18 GLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFIATFSGIDNIHSASE 75
GL G + + L R VL E R+L+ + + + G+ + A
Sbjct: 14 GLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAVRIDGVADRTGAEA 73
Query: 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN 135
L ++ A R+ E E + DLE + QG+ G V G+ GA +L ++
Sbjct: 74 LVGAEVLAPREALG--EAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMETGAVDVLVVQG 131
Query: 136 TMEKTFLIPFTKFAVLEVNLQENKILIDP 164
L+P + +EV+ ++++DP
Sbjct: 132 A-RGELLVPLAPY--VEVDRAAGRVVVDP 157
>gi|86158337|ref|YP_465122.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-C]
gi|109892997|sp|Q2IJ53|RIMM_ANADE RecName: Full=Ribosome maturation factor rimM
gi|85774848|gb|ABC81685.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-C]
Length = 163
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 18 GLNGEVYIDSYANNPIDLNRYVL-YSNDNRELRILKMYRKNKRFIATFSGIDNIHSASEL 76
GL G + + L R VL + E ++L+ + + + G+ + A L
Sbjct: 14 GLKGHLGVAGSEGALGTLERVVLRHGAAEVERKVLEARPQGRLWAVRIDGVADRTGAEAL 73
Query: 77 RDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT 136
++ A R++ E E + DLE + QG+ G V G+ GA +L ++
Sbjct: 74 VGAEVLAPREELG--EAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMETGAVDVLVVQGA 131
Query: 137 MEKTFLIPFTKFAVLEVNLQENKILIDP 164
L+P + +EV+ ++++DP
Sbjct: 132 -RGELLVPLAPY--VEVDRAAGRVVVDP 156
>gi|157738179|ref|YP_001490863.1| 16S rRNA processing protein [Arcobacter butzleri RM4018]
gi|172045654|sp|A8EW70|RIMM_ARCB4 RecName: Full=Ribosome maturation factor rimM
gi|157700033|gb|ABV68193.1| 16S rRNA processing protein [Arcobacter butzleri RM4018]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
V +A +G T GL G + + ++ P + V ++ NR L++ + + R + F
Sbjct: 7 VYVAKLGKTVGLQGHLRLFIDSDFPEQFKKGVTFTT-NRNLQLKVLEYNSSRELVKFENY 65
Query: 68 DNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ A +L + +LYA + K+ +L ++EFF DL E F+ K G V ++ +
Sbjct: 66 EDVELAKKLTNQELYATIEQTKENCKLAKNEFFWFDLISCEVFENNLK-LGTVKEIHRYP 124
Query: 127 AGSILEI-------KNTMEKTFLIP--FTKFAVLEVNLQENKI 160
LEI K + K FLIP F KF +L ++++ +I
Sbjct: 125 LNDYLEIITDSELVKKALPKNFLIPHIFDKF-ILNIDIENKRI 166
>gi|30021930|ref|NP_833561.1| 16S rRNA-processing protein [Bacillus cereus ATCC 14579]
gi|29897486|gb|AAP10762.1| 16S rRNA processing protein rimM [Bacillus cereus ATCC 14579]
Length = 188
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + L + +R++K F
Sbjct: 24 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYISNEKGTDYLPVKVTSHRQHKTFD 81
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G +N+ + + + + EL E E++ ++ +G+ G +
Sbjct: 82 LLTFEGYNNVDEVEKFKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 139
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 140 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 187
>gi|312194951|ref|YP_004015012.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
gi|311226287|gb|ADP79142.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 15/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKMYRKNK 58
+ + +++ IG HG+ G+V ++ + P R+ S +R +L I +
Sbjct: 1 MGEAIVVGRIGKPHGVRGDVTVEVRTDLPD--RRFAPGSKLDRSGGGPDLVIEDSRWHSG 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-------FFNTDLEEMETFDR 111
R + F G+ + A LR + L D + ++ DE +++ DL +
Sbjct: 59 RLLVRFEGVADRTGAESLRGVVLTID-ADLAGDAVDPDEADEGGEFWWDRDLVGLRAVTP 117
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G G+V V + AG +L I L+PF + V V+ +++D
Sbjct: 118 DGSPLGEVTDVVHTAAGELLAIGTPTGGEHLVPFVREIVPTVDRAGGLLVVD 169
>gi|295399788|ref|ZP_06809769.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111700|ref|YP_003990016.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
gi|294978191|gb|EFG53788.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216801|gb|ADP75405.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
Length = 172
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K + I THG+ GEV + S + P + + Y+ + I+K +R +
Sbjct: 1 MEKWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFMEKSQEPIEVIVKSHRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + +F G DNI+ + + L EL E E++ ++ +G+
Sbjct: 61 KSFDLLSFEGYDNINLVEKFKGAMLKVPESQLG--ELNEGEYYFHEIIGCTVVTEEGETV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V + GA + +K K LIP+ + V V+++ I I P+ L
Sbjct: 119 GTVSEILTPGANDVWVVKRNNGKEALIPYIEDIVKNVDVEAKIITIRPMEGLL 171
>gi|77457247|ref|YP_346752.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens Pf0-1]
gi|109893035|sp|Q3KHJ3|RIMM_PSEPF RecName: Full=Ribosome maturation factor rimM
gi|77381250|gb|ABA72763.1| 16S rRNA processing protein [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPID-----LNRYVLYSNDNRELRILKMYRKN 57
K D L+++ I + HG+ GEV + S+ +PI+ N + +++ ++
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVFSF-TDPIENLLGYRNWTLRREGVVKQVELVSGRSTQ 65
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + G+D+ A L ++ R D L DE++ LE + ++ + +G
Sbjct: 66 KDLVVKLKGLDDRDEARLLSGYEICIPRSLLPD--LTADEYYWYQLEGLSVINQDEQLFG 123
Query: 118 QVCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQ 156
+V + GA +L +K + ++ L+P+T+ VL ++L+
Sbjct: 124 KVDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCVLAIDLE 166
>gi|327183808|gb|AEA32255.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1118]
Length = 186
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 21 VAKILTTHGLNGEVKVNVITDFPEDRFAEGMQLALKADTDRILTIKKSRPFKQFWLLQFD 80
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 81 EVNDIDEAEKLRGQILVVSEDNRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 138
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 139 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVPNKKVYVE 177
>gi|325273827|ref|ZP_08140012.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
gi|324101033|gb|EGB98694.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
Length = 178
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIARSLLPN--LAADEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K ++ L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLEAGTMRVE 173
>gi|163941580|ref|YP_001646464.1| 16S rRNA-processing protein [Bacillus weihenstephanensis KBAB4]
gi|229013025|ref|ZP_04170190.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
gi|229061445|ref|ZP_04198790.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|229134650|ref|ZP_04263459.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|229168581|ref|ZP_04296304.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|229485581|sp|A9VT80|RIMM_BACWK RecName: Full=Ribosome maturation factor rimM
gi|163863777|gb|ABY44836.1| 16S rRNA processing protein RimM [Bacillus weihenstephanensis
KBAB4]
gi|228614987|gb|EEK72089.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|228648696|gb|EEL04722.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|228717868|gb|EEL69516.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|228748279|gb|EEL98139.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY D + L + +R++K F
Sbjct: 7 VGKIVNTHGVKGEIRVISRTDFPEE--RYKVGNTLYIWDEKGTDYLTVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T G +N+ +L+ + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTLEGYNNVDEVEKLKGSLIKVPEEQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|81428332|ref|YP_395332.1| 16S rRNA processing protein, RimM [Lactobacillus sakei subsp. sakei
23K]
gi|109893021|sp|Q38XQ8|RIMM_LACSS RecName: Full=Ribosome maturation factor rimM
gi|78609974|emb|CAI55021.1| 16S rRNA processing protein, RimM [Lactobacillus sakei subsp. sakei
23K]
Length = 176
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKN 57
+K + I THG+ GEV + A R+ V N + + M +
Sbjct: 3 EKYYQVGKIVNTHGIRGEVRV--IATTDFTEERFKKGTHLAVEMPNGLTPVTVSAMRQHK 60
Query: 58 KRFIATFSGIDNIHSASELR--DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
+ ++ F G+ NI+ + +LK+ A +D++LE+DE++ D+ +E + G
Sbjct: 61 QFYLLQFEGLGNINDVELFKGHNLKIAASE---RDDQLEDDEYYYGDIIGLEVIEESDGT 117
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+G+V + + G + IK L+PF K + +++++ K ++ + GL
Sbjct: 118 SYGKVSEIIDPGPNDVWVIKRRGRSDLLLPFLKSVIKKIDIEAGKAYVE-VPEGL 171
>gi|169830843|ref|YP_001716825.1| 16S rRNA processing protein RimM [Candidatus Desulforudis
audaxviator MP104C]
gi|238688234|sp|B1I2N0|RIMM_DESAP RecName: Full=Ribosome maturation factor rimM
gi|169637687|gb|ACA59193.1| 16S rRNA processing protein RimM [Candidatus Desulforudis
audaxviator MP104C]
Length = 170
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRK--NKRF- 60
++L+L+ I T G G V + + P R +Y R++ + R +KRF
Sbjct: 3 EELILIGEIVNTQGHRGAVRVLPLTDFPERFRRLKSVYLEQGPVRRLVHIGRVSYHKRFV 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I ++++A +L+ +L R + L + + D+ FD +G+Y G V
Sbjct: 63 ILEFREIPDMNAAEKLKGAQLKIHRSELVP--LPDGHHYVFDIVGSSVFDAEGEYLGVVE 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + +K+ + L+P K V +++L +I +
Sbjct: 121 DVLRTGANDVYVVKSGEGDSLLVPALKTVVRDIDLARRRITV 162
>gi|30263845|ref|NP_846222.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Ames]
gi|47529270|ref|YP_020619.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227813250|ref|YP_002813259.1| 16S rRNA processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229600064|ref|YP_002868079.1| 16S rRNA processing protein RimM [Bacillus anthracis str. A0248]
gi|254683450|ref|ZP_05147310.1| 16S rRNA-processing protein RimM [Bacillus anthracis str.
CNEVA-9066]
gi|254735880|ref|ZP_05193586.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Western
North America USA6153]
gi|254751179|ref|ZP_05203218.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Vollum]
gi|254756727|ref|ZP_05208756.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Australia
94]
gi|33301488|sp|Q81WJ5|RIMM_BACAN RecName: Full=Ribosome maturation factor rimM
gi|254797741|sp|C3P5P3|RIMM_BACAA RecName: Full=Ribosome maturation factor rimM
gi|254797742|sp|C3L785|RIMM_BACAC RecName: Full=Ribosome maturation factor rimM
gi|30258489|gb|AAP27708.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Ames]
gi|47504418|gb|AAT33094.1| 16S rRNA processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005104|gb|ACP14847.1| 16S rRNA processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229264472|gb|ACQ46109.1| 16S rRNA processing protein RimM [Bacillus anthracis str. A0248]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR--ELRILKM--YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + E +K+ +R++K F
Sbjct: 7 VGKIVNTHGVKGEIRVVSRTDFPEE--RYKVGNTLYISNEKGGEPFPVKITSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVTEGL 170
>gi|315636322|ref|ZP_07891572.1| 16S rRNA processing protein RimM [Arcobacter butzleri JV22]
gi|315479411|gb|EFU70094.1| 16S rRNA processing protein RimM [Arcobacter butzleri JV22]
Length = 177
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A +G T GL G + + ++ P + V +S NR L++ + + R + F
Sbjct: 6 IYVAKLGKTVGLQGHLRLFIDSDFPEQFKKGVTFST-NRNLQLKVLEYNSSRELVKFENY 64
Query: 68 DNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ A +L + +LYA + K+ +L ++EFF DL E F+ K G V ++ +
Sbjct: 65 EDVELAKKLTNQELYATIEQTKENCKLAKNEFFWFDLISCEVFENNLK-LGIVKEIHRYP 123
Query: 127 AGSILEI-------KNTMEKTFLIP--FTKFAVLEVNLQENKI 160
LEI K + K FLIP F KF +L ++++ +I
Sbjct: 124 LNDYLEIITDSELAKKALPKNFLIPHIFDKF-ILNIDIENKRI 165
>gi|88855265|ref|ZP_01129930.1| 16S rRNA processing protein [marine actinobacterium PHSC20C1]
gi|88815793|gb|EAR25650.1| 16S rRNA processing protein [marine actinobacterium PHSC20C1]
Length = 188
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----------IDLNRYVLYSNDNRELRILKMYRKNK 58
M + HGL G + ++ Y + P + + + EL LK Y N
Sbjct: 1 MGRLTKAHGLKGAIKVEMYTDAPERRFVPGAVFSLQVPTSSPWHGKTLELIELKWY--NA 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +A F G+ + A L L+ +EE EED +F+ L ++ R G+ G
Sbjct: 59 QPVAFFKGVLDRSDAEGLIKAILWIDHD--PNEEPEEDAWFDHQLVGLKVI-RDGQQVGT 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ V +F +L + T L+PF K V V+L+ ++++ P
Sbjct: 116 LAQVDHFPVQDLLTV-TTENGDVLVPFVKSIVASVDLEAGEMVVTP 160
>gi|303248433|ref|ZP_07334692.1| 16S rRNA processing protein RimM [Desulfovibrio fructosovorans JJ]
gi|302490144|gb|EFL50063.1| 16S rRNA processing protein RimM [Desulfovibrio fructosovorans JJ]
Length = 183
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELR----ILKMYRKNK 58
+K +++ + HG+ GE+ IDS+A++P D VL R ++ R +K
Sbjct: 4 EKYIIVGDVARPHGIRGELCIDSHADSPSYFDRGAEVLLCPPGSPGRGRVYTVRAARVHK 63
Query: 59 -RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-- 115
R + +F G+ + ++A LR L + + DE F L + Q
Sbjct: 64 ERLLVSFEGVPDRNAAELLRGLAVCVPASRLVPP--DPDEVFLHQLLGLRVRLAQAAPGS 121
Query: 116 --WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+G + V + G + I++ L P V +++L+ ++IDP
Sbjct: 122 PDFGVIEDVRDSGGAELWVIRDAAGHEILFPAADELVPDIDLEAGFVVIDP 172
>gi|65321170|ref|ZP_00394129.1| COG0806: RimM protein, required for 16S rRNA processing [Bacillus
anthracis str. A2012]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + + +R++K F
Sbjct: 7 VGKIVNTHGVKGEIRVVSRTDFPEE--RYKVGNTLYISNEKGGEPFPVKXTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVTEGL 170
>gi|295677252|ref|YP_003605776.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1002]
gi|295437095|gb|ADG16265.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1002]
Length = 244
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 71 VEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGPERKSAPSLQAKTHSDSV 130
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + A LR ++Y R +F LE DEF+ DL ++ + G G+V
Sbjct: 131 VARLGGVADRDVALGLRGSRVYISRSEF--PALEADEFYWVDLIGLDVVNLAGLNLGKVA 188
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA S+L I+ + LIPF V V+ +I++D
Sbjct: 189 SMVDNGAQSVLRIEYPATDKNGKPVAGERLIPFVGVFVKTVDQAAKQIVVD 239
>gi|52141646|ref|YP_085183.1| 16S rRNA-processing protein [Bacillus cereus E33L]
gi|59798170|sp|Q636I4|RIMM_BACCZ RecName: Full=Ribosome maturation factor rimM
gi|51975115|gb|AAU16665.1| 16S rRNA processing protein [Bacillus cereus E33L]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR--ELRILKM--YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + E +K+ +R++K F
Sbjct: 7 VGKIVNTHGVKGEIRVVSLTDFPEE--RYKVGNTLYISNEKGGEPFPVKITSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|298370120|ref|ZP_06981436.1| 16S rRNA processing protein RimM [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281580|gb|EFI23069.1| 16S rRNA processing protein RimM [Neisseria sp. oral taxon 014 str.
F0314]
Length = 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M + V M I G+ G + I + Y ++ +D ++L S + + L ++ K
Sbjct: 1 MTDTQQRVAMGYIKGVFGIKGWLKIAADTEYPDSLLDYPEWLL-SKNGKTLNVVLETGKL 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
F GID+ A LR + R +F EDE++ TDL M +++G
Sbjct: 60 VGDELQVKFEGIDDRDQAFALRGYTVEIPRAEFS--PAGEDEYYWTDLVGMTVVNKEGIT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + GA +L I+ T +K LIPF + VN I D
Sbjct: 118 LGTVKNLMETGANDVLVIQGT-DKQILIPFVSNYIETVNHDSKTITAD 164
>gi|260886931|ref|ZP_05898194.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
gi|260862993|gb|EEX77493.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
Length = 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D V++ G HGL GEV + + P R + ++ + + T
Sbjct: 3 DGRVVIGKAGAPHGLRGEVRVIPLTDFPERFESLREVFIGERVFHVEHVHYHRQFVLLTL 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A++L L R+D L E EF+ D+ + D G+ G+V V
Sbjct: 63 AECTSREAAAKLTGELLRVAREDAAP--LAEGEFYTFDIIGLAVLDMAGERLGEVTNVLK 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ + +K T L+P K V E+++ + +D
Sbjct: 121 TGSNDVYVVKKTDGAELLVPALKKVVREIDIAGGFLRVD 159
>gi|302389632|ref|YP_003825453.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
gi|302200260|gb|ADL07830.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
Length = 170
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 22/158 (13%)
Query: 18 GLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKN------KRFIA-TFS 65
G+ G+V +++ + D+NR+ VL D LK Y N K F+A
Sbjct: 15 GVRGQVKVEALTD---DVNRFRKLKSVLVEEDE----ALKSYVVNSVVFLKKDFVALKLE 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQVCGVYN 124
GID + SA LR L R+D +L E +F D+ ME + + G+ G+V V
Sbjct: 68 GIDTVESAERLRGRYLMVHRKDAV--KLPEGHYFICDIIGMEVYREEDGELLGRVRDVLK 125
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + + + L+P + V +++L+ NK+++
Sbjct: 126 TGANDVYVVDLKGGRELLLPAIRDVVRKIDLENNKMVV 163
>gi|241763736|ref|ZP_04761784.1| 16S rRNA processing protein RimM [Acidovorax delafieldii 2AN]
gi|241367041|gb|EER61426.1| 16S rRNA processing protein RimM [Acidovorax delafieldii 2AN]
Length = 189
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMYRK 56
V + I G+ G + S++ +P L R+ L ++ L+I +
Sbjct: 17 VEVGRIADAWGVKGWFKVLSHSASPEALFSSKRWYLQPSERGAKTFSGTALLQIRQAKDH 76
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A GID+ +A LR +++ R F EDE++ DL ++ +R+G
Sbjct: 77 SDTVVAWAQGIDDRDAAEALRGARIFVPRSSFPSTT--EDEYYWVDLIGLQVVNREGVAL 134
Query: 117 GQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + + G ++L + +E+ +IPF V +V+L E +I +D
Sbjct: 135 GLVRELMSTGPQTVLVLAYEQDGKALER--MIPFVSAFVDKVDLPEKRITVD 184
>gi|156975744|ref|YP_001446651.1| 16S rRNA-processing protein [Vibrio harveyi ATCC BAA-1116]
gi|166226487|sp|A7MYV0|RIMM_VIBHB RecName: Full=Ribosome maturation factor rimM
gi|156527338|gb|ABU72424.1| hypothetical protein VIBHAR_03479 [Vibrio harveyi ATCC BAA-1116]
Length = 182
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ G T+G+ G + + SY +N + Y + + + E ++ R NK +A
Sbjct: 14 IVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWFINQKGTWVEYKVESWKRHNKGMVAK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L + ++ EL EDEF+ +L M+ +G G V +
Sbjct: 74 LEGLDIREDAHLLTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVSDIL 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILID 163
G+ +L +K ++ F LIPF + V ++V+ + +I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVD 177
>gi|118579529|ref|YP_900779.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
gi|118502239|gb|ABK98721.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
Length = 152
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +F+ F G+D+I A L ++ +R E EEDE++ DL +E +G
Sbjct: 40 RPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLP--EPEEDEYYWCDLIGLEVATVEGMA 97
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + ++ G+ I ++ + +LIP + V+L+ ++LI P+ L+
Sbjct: 98 LGVLEEIFKAGSSDIYVVRGA-GREYLIPAIADVIHSVDLEMGRMLITPLEGLLD 151
>gi|325971133|ref|YP_004247324.1| ribosome maturation factor rimM [Spirochaeta sp. Buddy]
gi|324026371|gb|ADY13130.1| Ribosome maturation factor rimM [Spirochaeta sp. Buddy]
Length = 168
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRE--LRILKMYRKNK 58
++KL+ AT+ + G+ GEV I + + L + +L + D E L I
Sbjct: 1 MEKLLWTATVKSPFGIAGEVKIHPHNEDCSYLGKLKEVILCAKDGTEQLLTIQSFRMMGS 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F G D+ +A L L +R K L++ +F+ DL GK+ +
Sbjct: 61 QPIMKFVGFDDPETARALNGQHLMVERS--KAAPLKKGQFYVNDLIGCSMM-HDGKFIAE 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V + +LE++ ++ +++P+ K + EV+L+ I
Sbjct: 118 VVSSIDGAQAVLLEVRTAEDQLYMVPYLKEYIGEVDLENRTI 159
>gi|289704589|ref|ZP_06501022.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
gi|289558709|gb|EFD51967.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSND---NRELRILKMYRKN 57
D LV +A IG HG+ GEV + + ++P R V+ EL + +
Sbjct: 7 DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAELTVTRARWNK 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + F+ + + A LR +L+A + E DE++ DL ++E +G+ G
Sbjct: 67 QILVVGFAESPDRNVAETLRGAQLFAVPAAPE----ESDEWYEEDLVDLEVR-VEGERVG 121
Query: 118 QVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + +L + + +E+ L+PF + V E++ + +++ P
Sbjct: 122 VVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDPEAGVLVLTP 169
>gi|325957085|ref|YP_004292497.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
gi|325333650|gb|ADZ07558.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 6 VAKILTTHGLNGEVKVNVITDFPEDRFAEGIQLALKADTDRILTIKKSRPFKQFWLLQFD 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EVNDIDEAEKLRGQILVVSEDNRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVSNKKVYVE 162
>gi|330839280|ref|YP_004413860.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
gi|329747044|gb|AEC00401.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
Length = 172
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D V++ G HGL GEV + + P R + ++ + + T
Sbjct: 6 DGRVVIGKAGAPHGLRGEVRVIPLTDFPERFESLREVFIGERVFHVEHVHYHRQFVLLTL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A++L L R+D L E EF+ D+ + D G+ G+V V
Sbjct: 66 AECTSREAAAKLTGELLRVAREDAAP--LAEGEFYTFDIIGLAVLDMAGERLGEVTNVLK 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ + +K T L+P K V E+++ + +D
Sbjct: 124 TGSNDVYVVKKTDGAELLVPALKKVVREIDIAGGFLRVD 162
>gi|296129319|ref|YP_003636569.1| 16S rRNA processing protein RimM [Cellulomonas flavigena DSM 20109]
gi|296021134|gb|ADG74370.1| 16S rRNA processing protein RimM [Cellulomonas flavigena DSM 20109]
Length = 188
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A IG HGL GEV +D + P D R L I ++ R+
Sbjct: 2 LLTVARIGRAHGLRGEVALDVRTDAPEDRLVVGARIATQPASAGPLEIARVREAQGRWYV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVCG 121
TF + +A LR + L DE E+D ++ L + G+ G+V G
Sbjct: 62 TFVQATDRTAAEALRGVALVVD--SDDDEADEDDAWYPHQLVGLRAEHAADGRLLGEVVG 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP----IAAGLNNTTMKNP 177
+ + A +L ++ L+PF V V++ ++++DP +AA N + +
Sbjct: 120 LEHLPAHDVLVLREADGARTLVPFVAAIVPVVDVAGGRVVLDPPGGLLAADAANLVVSDE 179
Query: 178 QYDCP 182
P
Sbjct: 180 TRGAP 184
>gi|227824780|ref|ZP_03989612.1| 16S rRNA processing protein rimM [Acidaminococcus sp. D21]
gi|226905279|gb|EEH91197.1| 16S rRNA processing protein rimM [Acidaminococcus sp. D21]
Length = 167
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M+ +++ +++ I HG+ GE I + P RY +++ +D R+L ++ + +
Sbjct: 1 MMTMEQQIVIGKIVAPHGVRGEFRIMPLTDQP---QRYAKMKIVHLDDGRDLTVVSVRQH 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ I N+ A LR +L ++ L + +F+ D+ G+ +
Sbjct: 58 KNVYLMMVKEITNMDEAEALRGRQLVISPKELP--PLPKGQFYVRDILGFAVESPDGEAF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
G V V + G+ + I + + L+ K +L ++ E+K++
Sbjct: 116 GTVKDVISPGSTDVFVIASPTGEEILLAAIKENILTIDWAEHKVV 160
>gi|331002000|ref|ZP_08325520.1| 16S rRNA processing protein RimM [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411796|gb|EGG91201.1| 16S rRNA processing protein RimM [Lachnospiraceae oral taxon 107
str. F0167]
Length = 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK----------- 58
+ I ++HG+ GE + Y + NR +I K+Y K
Sbjct: 7 VGVITSSHGIKGEAKV------------YPTSDDSNRLKKIKKVYADIKGVETSLDIETV 54
Query: 59 RF-----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
RF + F + LR+ L+ R + L+++E + DL ++ G
Sbjct: 55 RFQKNMALVKFKQFNTPEEIQALRNTDLFVDRDNAT--PLKKNENYIADLIGLDVIGEDG 112
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V+ GA ++E+ + EK L P+ +L+VNL+E KI +
Sbjct: 113 NILGKVTDVFPTGANHVMEV-DMGEKKVLFPYISQCILDVNLEEGKIFV 160
>gi|42782934|ref|NP_980181.1| 16S rRNA-processing protein RimM [Bacillus cereus ATCC 10987]
gi|49186692|ref|YP_029944.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Sterne]
gi|49481628|ref|YP_037903.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217961262|ref|YP_002339830.1| 16S rRNA-processing protein RimM [Bacillus cereus AH187]
gi|222097287|ref|YP_002531344.1| 16S rRNA-processing protein rimm [Bacillus cereus Q1]
gi|225865823|ref|YP_002751201.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228916479|ref|ZP_04080045.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928890|ref|ZP_04091922.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935156|ref|ZP_04097983.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947561|ref|ZP_04109851.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228986985|ref|ZP_04147111.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229092884|ref|ZP_04224018.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|229123356|ref|ZP_04252560.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|229140485|ref|ZP_04269040.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|229157418|ref|ZP_04285496.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|229186082|ref|ZP_04313251.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|229197952|ref|ZP_04324667.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|254720890|ref|ZP_05182681.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. A1055]
gi|301055332|ref|YP_003793543.1| 16S rRNA-processing protein [Bacillus anthracis CI]
gi|59798280|sp|Q6HEX3|RIMM_BACHK RecName: Full=Ribosome maturation factor rimM
gi|59798339|sp|Q732M8|RIMM_BACC1 RecName: Full=Ribosome maturation factor rimM
gi|209573750|sp|A0RHL5|RIMM_BACAH RecName: Full=Ribosome maturation factor rimM
gi|226694910|sp|B7HLH5|RIMM_BACC7 RecName: Full=Ribosome maturation factor rimM
gi|254797743|sp|C1EP66|RIMM_BACC3 RecName: Full=Ribosome maturation factor rimM
gi|254797744|sp|B9IVD1|RIMM_BACCQ RecName: Full=Ribosome maturation factor rimM
gi|42738861|gb|AAS42789.1| 16S rRNA processing protein RimM [Bacillus cereus ATCC 10987]
gi|49180619|gb|AAT55995.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Sterne]
gi|49333184|gb|AAT63830.1| 16S rRNA processing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217067406|gb|ACJ81656.1| 16S rRNA processing protein RimM [Bacillus cereus AH187]
gi|221241345|gb|ACM14055.1| 16S rRNA processing protein [Bacillus cereus Q1]
gi|225790577|gb|ACO30794.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228585531|gb|EEK43634.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|228597258|gb|EEK54909.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|228626145|gb|EEK82894.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|228643046|gb|EEK99322.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|228660132|gb|EEL15768.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|228690506|gb|EEL44289.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|228772763|gb|EEM21203.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228812081|gb|EEM58412.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824521|gb|EEM70326.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830697|gb|EEM76302.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843058|gb|EEM88140.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377501|gb|ADK06405.1| 16S rRNA-processing protein [Bacillus cereus biovar anthracis str.
CI]
gi|324327739|gb|ADY22999.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 171
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR--ELRILKM--YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + E +K+ +R++K F
Sbjct: 7 VGKIVNTHGVKGEIRVVSRTDFPEE--RYKVGNTLYISNEKGGEPFPVKITSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 65 LLTFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|148979278|ref|ZP_01815432.1| 16S rRNA-processing protein [Vibrionales bacterium SWAT-3]
gi|145961926|gb|EDK27217.1| 16S rRNA-processing protein [Vibrionales bacterium SWAT-3]
Length = 184
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K D+ ++M G T+G+ G + + SY +N + Y + + + E ++ R
Sbjct: 9 MSKQDEKIVMGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYVNQKGKWVEFKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK + G + A L + ++ EL E+EF+ +L M+ +G
Sbjct: 69 NKGMVCKLEGFEVREDAHVLTNFEIAIDPASLP--ELSEEEFYWRELFGMQVVTTKGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G V + G+ +L IK ++ F L+P+ + V+ +V+ + +I +D
Sbjct: 127 GVVTDMLETGSNDVLVIKANLKDAFGQKERLVPYLEEQVVKKVDREAQRIEVD 179
>gi|327329803|gb|EGE71559.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL096PA3]
Length = 179
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P + V R+L +++ FI F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCFIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D+ + DEF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEP-NDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
I + E+ L+PF V V++ +I++ I L++
Sbjct: 136 IDVSGEE-HLVPFVHQLVPTVDVASGRIVVSGIPGLLDS 173
>gi|239826593|ref|YP_002949217.1| 16S rRNA-processing protein RimM [Geobacillus sp. WCH70]
gi|259585645|sp|C5D8U4|RIMM_GEOSW RecName: Full=Ribosome maturation factor rimM
gi|239806886|gb|ACS23951.1| 16S rRNA processing protein RimM [Geobacillus sp. WCH70]
Length = 172
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
++K + I THG+ GEV + S + P + + Y+ + + +K +R +
Sbjct: 1 MEKWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFMEKSKEPVAVTVKSHRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G DNI+ + + L EL+E E++ ++ +G+
Sbjct: 61 KSFDLLAFEGYDNINLVEKFKGAMLKVPESQLG--ELDEGEYYFHEIIGCTVVTEEGETI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V + GA + +K K LIP+ + V V+++ I I P+ L
Sbjct: 119 GTVKEILTPGANDVWVVKRDNGKEVLIPYIEDVVKNVDVETKTITIRPMEGLL 171
>gi|289423978|ref|ZP_06425770.1| 16S rRNA processing protein RimM [Peptostreptococcus anaerobius
653-L]
gi|289155614|gb|EFD04287.1| 16S rRNA processing protein RimM [Peptostreptococcus anaerobius
653-L]
Length = 171
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 15 TTHGLNGEVYIDSYANNPID----LNRYVLYSNDNRELRILKMYR-KNKRFIATFSGIDN 69
TT GL G++ + SY +N ID L+ + + + ++ ++ K + N + D
Sbjct: 15 TTRGLKGDLKVYSYTDN-IDRFKELDYFYIGKDRTKKYQVEKTSKISNDMVVIKIKSYDT 73
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
I S LY R + EL++DE D+ M+ G+Y G++ V + A
Sbjct: 74 IESVQAFIQKDLYVDRSN--TYELDDDEMLIVDMIGMKVETVDGEYIGELKEVLQYSAND 131
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +K + +K FLIP T V +++ + I + PI L+
Sbjct: 132 VYIVKGS-DKEFLIPATYEIVPKIDKEARIIKVKPIPGLLD 171
>gi|312795478|ref|YP_004028400.1| 16S rRNA processing protein rimM [Burkholderia rhizoxinica HKI 454]
gi|312167253|emb|CBW74256.1| 16S rRNA processing protein rimM [Burkholderia rhizoxinica HKI 454]
Length = 219
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 46 RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEE 105
R +++ + +A +G + A LR ++ +R DF LE DE++ DL
Sbjct: 91 RAAQVVSSKAHSATVVAQLAGCADRDQAFALRGATVHVRRADFP--ALERDEYYWVDLIG 148
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQE 157
+ + G GQV + + GA SIL ++ + LIPF V V +
Sbjct: 149 LAVVNEFGDALGQVVALMDNGAHSILRVEYDEVGRDGRIKKAQRLIPFVDAYVKTVEPSD 208
Query: 158 NKILID 163
+I++D
Sbjct: 209 RRIVVD 214
>gi|317133000|ref|YP_004092314.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
gi|315470979|gb|ADU27583.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
Length = 173
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 7/157 (4%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRF-IATFSGIDN 69
I T GL GEV + + ++P L ++ + + R + R +K + F G +
Sbjct: 12 IVATQGLRGEVRVQPWCDSPDFLLQFGGFFLDGEGKNYRKVTDARVHKHMAVLKFEGAET 71
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCGVYNFGAG 128
+ A L LY R K +L E F DL M+ D G +G++ V GA
Sbjct: 72 VEDAMALLRRVLYIDR---KTVDLPEGSHFEQDLIGMDVVDAGDGHAYGKLTEVLRTGAN 128
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ + + K LIP V EV+ + I P+
Sbjct: 129 DVYTVTDAAGKEVLIPAIPDVVREVDTDAGVMHITPL 165
>gi|86149933|ref|ZP_01068162.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596991|ref|ZP_01100227.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218562351|ref|YP_002344130.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|14423901|sp|Q9PPJ5|RIMM_CAMJE RecName: Full=Ribosome maturation factor rimM
gi|85839751|gb|EAQ57011.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190680|gb|EAQ94653.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360057|emb|CAL34849.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284925968|gb|ADC28320.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315926827|gb|EFV06201.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929640|gb|EFV08821.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 305]
Length = 179
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y N + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVVD 120
Query: 122 VYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ K F IP+ V +++++ +I
Sbjct: 121 ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQIF 167
>gi|241759337|ref|ZP_04757443.1| 16S rRNA processing protein RimM [Neisseria flavescens SK114]
gi|241320473|gb|EER56770.1| 16S rRNA processing protein RimM [Neisseria flavescens SK114]
Length = 169
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M K V M I G+ G + I + Y ++ +D + L D + L ++ K
Sbjct: 1 MTDTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQL-CKDGKTLNVVLEAGKI 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F EEDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFA--PTEEDEYYWADLVGMTVINKENIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L IK + LIPF + V+ I+ D
Sbjct: 118 LGKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIITD 164
>gi|240146495|ref|ZP_04745096.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|257201351|gb|EEU99635.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|291535149|emb|CBL08261.1| 16S rRNA processing protein RimM [Roseburia intestinalis M50/1]
Length = 194
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVL-YSNDNRELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ L + +L ++ L I +
Sbjct: 18 MENLLQVGVITTTHGVRGEVKVFPTTDDAARFKKLKQVILDTGKEHLALEIAGVKFFKNM 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ R LY R++ +L+++E+F DL ++ +G+ G++
Sbjct: 78 VILKFKGYDNINDVEMFRKKSLYVTREN--AVKLKKNEYFIADLIGLKVISDEGEDLGEL 135
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
V GA + I L+P K V +V+++
Sbjct: 136 TDVLQTGANDVYVISKEGADDILLPAIKDCVKQVDIE 172
>gi|306836396|ref|ZP_07469374.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
gi|304567756|gb|EFM43343.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
Length = 165
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL-------YSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GEV ++ + P R+ + EL I + R
Sbjct: 3 LMIGRVIKSHGIKGEVVVEPTTDEP--EVRFAVGEKLQGRQGRKEHELTISAVRSHKGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T I + A LR + +A + DE F++ +LE + R G+ G V
Sbjct: 61 LVTCKEIADRTQADSLRGTQFFAAPLEDDDEG-----FYDHELEGLRVI-RDGEDIGAVV 114
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + + +LE++ + L+PF V EV+++ I P
Sbjct: 115 SVVHGPSQDLLEVELASGSSALVPFVHAIVPEVDVEAGTCTIQP 158
>gi|206901833|ref|YP_002251244.1| 16S rRNA processing protein RimM [Dictyoglomus thermophilum H-6-12]
gi|206740936|gb|ACI19994.1| 16S rRNA processing protein RimM [Dictyoglomus thermophilum H-6-12]
Length = 166
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSND---NRELRILKMYRKNKR 59
+V +A +G G+ G + I + + L + Y+ + + REL + + NK
Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIGTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ FS I A ++R L + +D +L E +++ + + ++ G+Y G+V
Sbjct: 61 YVIYFSEILTRDEAEKIRGNWLLIEEEDLP--KLPEGQYYTYQIMGLSVYEESGEYLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G+ + ++ E + IP K ++E+NL+E KI+I
Sbjct: 119 KEILETGSNDVYIVEGEEEDIY-IPAIKDVIVEINLEEGKIVI 160
>gi|260775498|ref|ZP_05884395.1| 16S rRNA processing protein RimM [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608679|gb|EEX34844.1| 16S rRNA processing protein RimM [Vibrio coralliilyticus ATCC
BAA-450]
Length = 182
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ G T+G+ G + + SY +N + Y + + + E ++ R NK +
Sbjct: 14 IVVGKFGATYGIRGWLKVFSYTDNTESIFDYAPWFINQKGEWVERKVESWKRHNKGLVVK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L + ++ EL EDEF+ DL M+ +G G V +
Sbjct: 74 LEGLDVREEAQLLTNFEIAIDPAVLP--ELPEDEFYWRDLIGMQVVTDKGYDLGTVSDML 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L +K ++ F LIPF + V++ ++ + +I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKLIDREAQRIEVD 177
>gi|229541112|ref|ZP_04430172.1| 16S rRNA processing protein RimM [Bacillus coagulans 36D1]
gi|229325532|gb|EEN91207.1| 16S rRNA processing protein RimM [Bacillus coagulans 36D1]
Length = 172
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + L D ++ +R +K+F +
Sbjct: 7 VGKIVNTHGIRGEVRVISQTDFKAERYKPGNTLYLFLPGRDEPLAVTIESHRVHKQFDLL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G D+I A + + L + +EL E+EF+ ++ E G+ G V +
Sbjct: 67 KFEGFDSIEEAEKWKGGMLKVSEEQL--DELGENEFYFHEIIGCEVVTTAGEKVGTVKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
GA + +K +K LIP+ + V +V+ +E +I+I+P+
Sbjct: 125 LTPGANDVWVVKTAQQKEALIPYIEDVVKKVDKKEKRIVIEPM 167
>gi|104774247|ref|YP_619227.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514337|ref|YP_813243.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122274931|sp|Q049R7|RIMM_LACDB RecName: Full=Ribosome maturation factor rimM
gi|122397101|sp|Q1G9L3|RIMM_LACDA RecName: Full=Ribosome maturation factor rimM
gi|103423328|emb|CAI98171.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093652|gb|ABJ58805.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325126033|gb|ADY85363.1| Probable 16S rRNA processing protein rimM [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 167
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I THGL GEV + + P D R + +D+RE+ + + ++ TF+
Sbjct: 6 VGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLVTFAE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I A +L+ ++ +D EL + ++ +L + D + G+ G++ +
Sbjct: 66 ITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I E+ + K+F +P+ V V++ + ++ ++
Sbjct: 124 GANDIWEVTDKNGKSFWLPYIPQVVKSVDIDKKEVRVE 161
>gi|262046942|ref|ZP_06019902.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
gi|260572924|gb|EEX29484.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
Length = 171
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A I TTHGLNGEV + + P D + ++ + ++ + R K+F + F+
Sbjct: 6 VARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEADRG--ELPEGVYYYKDIFDCNVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVE 162
>gi|323466315|gb|ADX70002.1| Ribosome maturation factor rimM [Lactobacillus helveticus H10]
Length = 171
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I TTH LNGEV ++ + P R+ L S+ NR L + K + ++
Sbjct: 6 VARILTTHRLNGEVKVNVITDFP--EERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQ 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
F I +I A +LR L +D EL + ++ D+ + + D + GK G++ +
Sbjct: 64 FKEITDIDQAEKLRGQILVVSEEDRG--ELPDGVYYYKDIFDCDVIDEETGKRIGKIVDI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA I ++ K + IP V +V++ K+ ++ + GL +
Sbjct: 122 QSPGANDIWLVREDDVKEYWIPNIADVVKKVDVAAKKVYVE-LMEGLRD 169
>gi|72161068|ref|YP_288725.1| 16S rRNA-processing protein RimM [Thermobifida fusca YX]
gi|109893064|sp|Q47S65|RIMM_THEFY RecName: Full=Ribosome maturation factor rimM
gi|71914800|gb|AAZ54702.1| 16S rRNA processing protein RimM [Thermobifida fusca YX]
Length = 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------SNDNRELRILKMYRKNKRFI 61
+++ IG HG+ GEV ++ ++P + R+V+ D L I R +
Sbjct: 3 LVVGRIGRPHGVKGEVTVEVRTDSPEE--RFVVGKALETDPADVGPLTITAQRWHKDRLL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + + +A +LR + L + + + DEF + +L + G+ G+V
Sbjct: 61 VRFEEVPDRTAAEQLRGVFLVVDSAELPPLD-DPDEFHDHELIGLRVETVDGEAVGEVVD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + A +L + L+PF + V +V+ +++IDP
Sbjct: 120 VLHH-AQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRVVIDP 161
>gi|283953922|ref|ZP_06371451.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794527|gb|EFC33267.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 178
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + RE+ +K Y + + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTREILKIKHYNISSSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+++ A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDVEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVID 120
Query: 122 VYNFGAGSILEIKN------TMEKTFLIPFTKFAVLEVNLQENKIL 161
+ G+ + EI++ KTF IP+ V +++++ +I
Sbjct: 121 ILETGSSYLFEIQSDEKWVKKYSKTFFIPYLDKFVKNIDIEKRQIF 166
>gi|289662768|ref|ZP_06484349.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289670358|ref|ZP_06491433.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRI--LKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY ++ + +E I ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRNAIFRYQPWIVRAPSGQESVISGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F + + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPDVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ F F V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDF-VKSVDFEANLIVVD 165
>gi|302525174|ref|ZP_07277516.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
gi|302434069|gb|EFL05885.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
Length = 171
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--------LYSNDNRELRILKMYRKNKR 59
V++ I HG+ GE+ +D ++P R+ L REL I + R
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSP--QERFAIGAVVTTKLRDGSTRELTIAAAREHSGR 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + A LR L A D + DEF++ +L + G G+V
Sbjct: 61 LLVRFEEVLTRDVAETLRGALLLAD-TDSLPPTGDPDEFYDHELAGLRAELTDGTVVGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + AG +LE+ + ++ L+PF + V V++ ++++DP
Sbjct: 120 VEVVHSPAGELLELDHD-GRSVLVPFVRAIVPVVDVAGGRVVLDP 163
>gi|118479064|ref|YP_896215.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
gi|118418289|gb|ABK86708.1| 16S rRNA processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
Length = 193
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR--ELRILKM--YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY ++ + E +K+ +R++K F
Sbjct: 29 VGKIVNTHGVKGEIRVVSRTDFPEE--RYKVGNTLYISNEKGGEPFPVKITSHRQHKTFD 86
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 87 LLTFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIK 144
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 145 EVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 192
>gi|56419735|ref|YP_147053.1| 16S rRNA-processing protein RimM [Geobacillus kaustophilus HTA426]
gi|67461272|sp|Q5L0P5|RIMM_GEOKA RecName: Full=Ribosome maturation factor rimM
gi|56379577|dbj|BAD75485.1| 16S rRNA processing protein [Geobacillus kaustophilus HTA426]
Length = 175
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M +++ + I THG+ GEV + S + P + + Y+ D + + +K +
Sbjct: 1 MKAMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRERDTEPIEVTVKSH 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K F + +F G D+I+ + L EL E E++ ++ G
Sbjct: 61 RVHKSFDLLSFEGYDSINDVERFKGAMLKVPESQLG--ELAEGEYYFHEIIGCTVVTEGG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G V + GA + ++ LIP+ VL V+ + I+I P+ L
Sbjct: 119 ETIGAVKEILTPGANDVWVVRREDGSEALIPYIDEVVLHVDPERKTIIIRPMEGLL 174
>gi|116671027|ref|YP_831960.1| 16S rRNA-processing protein RimM [Arthrobacter sp. FB24]
gi|171855198|sp|A0JXU0|RIMM_ARTS2 RecName: Full=Ribosome maturation factor rimM
gi|116611136|gb|ABK03860.1| 16S rRNA processing protein RimM [Arthrobacter sp. FB24]
Length = 197
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG HG+ GEV + + P I R+V+ L + + F
Sbjct: 5 VARIGKPHGIRGEVTVQVLTDAPEDRFIPGTRFVVEPASAGPLTVDSARWNKDILLLGFE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELE---EDEFFNTDLEEMETFDRQG-KYWGQVCG 121
GI+ + A LR KL+ + ++ ++E+ E E E D+ R G G + G
Sbjct: 65 GIETRNQAEALRGAKLFIETEELEEEDDEGWYEHELVGLDV-------RVGDAVVGTISG 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ ++ +++ K LIPF + V EVN+ E IL+ P
Sbjct: 118 LRTLPVQDLIVVESPDGKEILIPFVEEIVPEVNVGEKYILVTP 160
>gi|57237014|ref|YP_178816.1| 16S rRNA processing protein RimM [Campylobacter jejuni RM1221]
gi|67461263|sp|Q5HV69|RIMM_CAMJR RecName: Full=Ribosome maturation factor rimM
gi|57165818|gb|AAW34597.1| 16S rRNA processing protein RimM [Campylobacter jejuni RM1221]
gi|315058175|gb|ADT72504.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni S3]
Length = 179
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y N + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVVD 120
Query: 122 VYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ K F IP+ V +++++ +I
Sbjct: 121 ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNIDIEKRQIF 167
>gi|225075459|ref|ZP_03718658.1| hypothetical protein NEIFLAOT_00464 [Neisseria flavescens
NRL30031/H210]
gi|224953277|gb|EEG34486.1| hypothetical protein NEIFLAOT_00464 [Neisseria flavescens
NRL30031/H210]
Length = 169
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M K V M I G+ G + I + Y ++ +D + L D + L ++ K
Sbjct: 1 MTNTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQL-CKDGKTLNVVLETGKI 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F EEDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFA--PTEEDEYYWADLVGMTVINKENII 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L IK + LIPF + V+ I+ D
Sbjct: 118 LGKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIIAD 164
>gi|311898560|dbj|BAJ30968.1| putative 16S rRNA-processing protein RimM [Kitasatospora setae
KM-6054]
Length = 210
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYR---KNKRFIAT 63
+++ IG HG+ G+V ++ + P + L + D + L + + R +
Sbjct: 3 LVVGKIGRAHGIRGDVSVEVRTDEPELRLGPGAVLLTDPAAIGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR L A+ D ++ + DE+++ L ++ G G++ V
Sbjct: 63 FAGVKDRTAAEALRGTMLIAE-IDPEETPDDPDEYYDHQLIGLDVVLADGTPVGELTEVI 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI-------LIDPIAA 167
+ +L ++ L+PF + V ++L E ++ LIDP+ A
Sbjct: 122 HLPYQDLLTVQRPDGTEVLVPFVEQIVPVIDLDEQRVVLTPPPGLIDPVDA 172
>gi|168188035|ref|ZP_02622670.1| 16S rRNA processing protein RimM [Clostridium botulinum C str.
Eklund]
gi|169294123|gb|EDS76256.1| 16S rRNA processing protein RimM [Clostridium botulinum C str.
Eklund]
Length = 162
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THG+ GEV + +N D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGIKGEVKVMPSTDNVERFKELNEAYIDGNMMEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
ID+I A +L++ + R+ K L+ED ++ D+ +D K G + +
Sbjct: 61 IKDIDSIEDAQKLKNKYIKVNRK--KAVALDEDCYYEADIIGCTVYDENEKQLGTIDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+ + IK E LIP K ++++++ KI+I P+
Sbjct: 119 RTGSNDVYWIKG--ENEILIPAIKSIIVDIDVTNKKIIIKPL 158
>gi|225463376|ref|XP_002271571.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297740629|emb|CBI30811.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP--------IDLNRYVLYSNDN-RELRIL--KMY 54
+ V + I + HGL GE+ + + P I R + RE+ ++ + +
Sbjct: 76 EFVEVGYISSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVELVEGRGH 135
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME-TFDRQG 113
K +I F GID + A +L L + D ELEE EF++ DL M T G
Sbjct: 136 PGQKTWILKFGGIDTVEEAKQLVGSSLLVREDD--RPELEEGEFYSRDLLGMRVTLKETG 193
Query: 114 KYWGQVCGVYNFGAGSILEI 133
+ G V V++ GA +L++
Sbjct: 194 EPVGTVVNVFSTGANDLLQV 213
>gi|78044794|ref|YP_360263.1| 16S rRNA processing protein RimM [Carboxydothermus hydrogenoformans
Z-2901]
gi|109893006|sp|Q3AC71|RIMM_CARHZ RecName: Full=Ribosome maturation factor rimM
gi|77996909|gb|ABB15808.1| 16S rRNA processing protein RimM [Carboxydothermus hydrogenoformans
Z-2901]
Length = 172
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKR 59
++ L+ + + T G+ G V ++ ++P ++ R D LRI ++ + +R
Sbjct: 1 MNNLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQLQAER 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDE--ELEEDEFFNTDLEEMETFDRQGKYWG 117
+ F I++I A++L ++ + K+E +L+E+EF+ L+ + +D + G
Sbjct: 61 ILVKFMEINDIKEANKL----IFGYLKIPKNEIVQLKENEFYLFQLKGLTVYDLNYQKIG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V V A +L I +K L+PF K V EVNL E I ++ + L
Sbjct: 117 VVRTVLKNPANDLLVIDTIHDKELLLPFIKVFVKEVNLPEGFIKVELLPGML 168
>gi|307297776|ref|ZP_07577582.1| 16S rRNA processing protein RimM [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306917036|gb|EFN47418.1| 16S rRNA processing protein RimM [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 185
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKM---YRKN 57
L+++V + I HGL GE+ + + ++ +LY R + + R
Sbjct: 9 LEEMVPIGRIVKPHGLRGEMKVKVALEDETAFKEIQEVLLYDEKTRSRFVTSIDGARRAT 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +I F GID++ A L +Y + + EL++ E++ + FD ++ G
Sbjct: 69 KGWILHFEGIDSMGQAERLVGFHIYVEERVLP--ELKQGEYYYFQILGSSVFDENRRFIG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTF---LIPFTKFAVLEVNLQENKIL 161
V + GA ++ + + T LIP + +LE+N ++ I+
Sbjct: 127 TVNDIIETGANDVMVVVREEDLTVREELIPIIRDYILELNFEDKTIV 173
>gi|291539679|emb|CBL12790.1| 16S rRNA processing protein RimM [Roseburia intestinalis XB6B4]
Length = 194
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVL-YSNDNRELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ L + +L ++ L I +
Sbjct: 18 MENLLQVGVITTTHGVRGEVKVFPTTDDAARFKKLKQVILDTGKEHLALEIAGVKFFKNM 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ R LY R++ +L+++E+F DL ++ +G+ G++
Sbjct: 78 VILKFKGYDNINDVEMFRKKSLYVTREN--AVKLKKNEYFIADLIGLKMISDEGEDLGEL 135
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
V GA + I L+P K V +V+++
Sbjct: 136 TDVLQTGANDVYVISKEGADDILLPAIKDCVKQVDIE 172
>gi|296117624|ref|ZP_06836208.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
gi|295969355|gb|EFG82596.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
Length = 171
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR---ELRILKMYRKNKRF 60
+L+ + +HG+ GEV +D ++P + R+ VL E I + R
Sbjct: 7 LLIGRVIKSHGIKGEVSVDVTTDSPEE--RFYPGAVLNGKQGAKDLEFTISTVRAHKGRL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF I + A LR ++ +A + D++ D F++ +LE + G G+V
Sbjct: 65 LLTFEEITDRTQADSLRGVQFFAPPLEDDDDD---DGFYDHELEGL-NLVLDGNVIGEVT 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ + S+LE K K LIPF + V E++L E I P
Sbjct: 121 GISHGPVQSLLEAKLHNGKEALIPFVEEIVPEIDLDEGTCTITP 164
>gi|325685918|gb|EGD27983.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 167
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I THGL GEV + + P D R + +D+RE+ + + ++ TF+
Sbjct: 6 VGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLVTFAE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I A +L+ ++ +D EL + ++ +L + D + G+ G++ +
Sbjct: 66 ITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I E+ + K+F +P+ V V++ + ++ ++
Sbjct: 124 GANDIWEVTDENGKSFWLPYIPQVVKSVDIDKKEVRVE 161
>gi|229019037|ref|ZP_04175878.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
gi|229025283|ref|ZP_04181703.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|228736036|gb|EEL86611.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|228742277|gb|EEL92436.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
Length = 171
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKM----YRKNKRF- 60
+ I THG+ GE+ + S + P + RY LY + + L + +R++K F
Sbjct: 7 VGKIVNTHGVRGEIRVISRTDFPEE--RYKVGNTLYICNEKGTDYLPVKVTSHRQHKTFD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T G +N+ +L+ + + EL E E++ ++ +G+ G +
Sbjct: 65 LLTLEGYNNVDEVEKLKGSLIKVPEEQLG--ELAEGEYYYHEIIGCSVVTEEGEALGTIK 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 123 EILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 170
>gi|104783232|ref|YP_609730.1| 16S rRNA-processing protein RimM [Pseudomonas entomophila L48]
gi|122402143|sp|Q1I5Y9|RIMM_PSEE4 RecName: Full=Ribosome maturation factor rimM
gi|95112219|emb|CAK16946.1| 16S rRNA processing protein [Pseudomonas entomophila L48]
Length = 178
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGHEICISRSLLPN--LATDEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQ 156
+ + GA +L +K ++ L+P+T VL V+L+
Sbjct: 125 IDHLLETGANDVLVVKPCAGSLDDRERLLPYTGQCVLAVDLE 166
>gi|319944226|ref|ZP_08018502.1| 16S rRNA processing protein RimM [Lautropia mirabilis ATCC 51599]
gi|319742521|gb|EFV94932.1| 16S rRNA processing protein RimM [Lautropia mirabilis ATCC 51599]
Length = 195
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L+ +++ R DF ++DEF++ DL E +QG G V V + GA +L
Sbjct: 105 ALALKGVEIQVDRADFP--PTQDDEFYHADLIGCEVIGQQGARLGTVVAVDDHGAQQVLR 162
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + M LIPF + V V++ +I D
Sbjct: 163 LDDGM----LIPFVEAIVQSVDIAARRIQAD 189
>gi|291459091|ref|ZP_06598481.1| 16S rRNA processing protein RimM [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418345|gb|EFE92064.1| 16S rRNA processing protein RimM [Oribacterium sp. oral taxon 078
str. F0262]
Length = 178
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSN---------DNRELRILKMYRKN 57
+ I THGL GE+ + ++P ++L + L RE + + +
Sbjct: 7 VGMISATHGLKGELKVIPTTDDPKRFLELKKLRLRKKARGLRREDETEREFSVESVRFQK 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + SGI+ I A LR +L+ R D L E E+F D + G+ G
Sbjct: 67 ELVLLKLSGINRIEDAENLRGSELWIDRADAV--ALAEGEYFLGDYIGLRVLTEDGEELG 124
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++ + GA + ++ + LIP ++ VLE +E + I
Sbjct: 125 KIRSILETGANYVFSVEREGGRELLIPNSENCVLEKKPEEGYLRI 169
>gi|84468326|dbj|BAE71246.1| hypothetical protein [Trifolium pratense]
Length = 669
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSNDNRELRILKMYRK 56
K + + + HG G+V + + P L + V+ +E+ + +
Sbjct: 77 KFIDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLRQRVMSEESVKEVELEEGREH 136
Query: 57 NKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
+ + +I F GI+++ A L L +D ELE+ EF+ DL M F ++ G
Sbjct: 137 SGKNCWILKFRGIESVEEAKMLIGATLLVTEED--KPELEDGEFYAHDLNGMRVFMKENG 194
Query: 114 KYWGQVCGVYNFGAGSILEI----------KNTMEKT---------FLIPFTKFAVLEVN 154
K G V V+N GA +L+I KN K L+PF + V +V+
Sbjct: 195 KLLGTVINVFNTGANDLLQISLDSSFDVLDKNGQPKPEEIDASGQLVLLPFVEAIVSDVD 254
Query: 155 LQENKILIDP 164
+ + ++ I P
Sbjct: 255 MNKREMHITP 264
>gi|310828466|ref|YP_003960823.1| RimM protein [Eubacterium limosum KIST612]
gi|308740200|gb|ADO37860.1| RimM protein [Eubacterium limosum KIST612]
Length = 171
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNR-----ELRILKMYRKNK 58
+++ I HG+ GE+ + ++P R+ +Y D + E+ ++++++ N
Sbjct: 6 MVIGKILGAHGIRGELKVYPLTDDP---GRFYGLDTVYVQDGQKQECCEVELVRLHKGN- 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ T G+ + + + +L + R+D LEEDE+F DL ++ D G G
Sbjct: 62 -VLLTLKGVSDRNQSEKLIGRTVAVDREDAV--ALEEDEYFIEDLIGLDVTDTDGAPVGV 118
Query: 119 VCGVYNFGAGSI--LEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V V AGS+ +EIK T EK +P K L+V+ + +I D
Sbjct: 119 VKDVIQT-AGSVDNIEIK-TPEKLVYVPARKVYFLKVDFENKRITAD 163
>gi|313124063|ref|YP_004034322.1| ribosome maturation factor rimm [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280626|gb|ADQ61345.1| Ribosome maturation factor rimM [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 167
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I THGL GEV + + P D R + +D+RE+ + + ++ TF+
Sbjct: 6 VGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLVTFTE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I A +L+ ++ +D EL + ++ +L + D + G+ G++ +
Sbjct: 66 ITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I E+ + K+F +P+ V V++ + ++ ++
Sbjct: 124 GANDIWEVTDENGKSFWLPYIPQVVKSVDIDKKEVRVE 161
>gi|269961268|ref|ZP_06175635.1| 16S rRNA-processing protein [Vibrio harveyi 1DA3]
gi|269834029|gb|EEZ88121.1| 16S rRNA-processing protein [Vibrio harveyi 1DA3]
Length = 182
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ G T+G+ G + + SY +N + Y + + + E ++ R NK +A
Sbjct: 14 IVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWFINQKGTWVEYKVESWKRHNKGMVAK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + + ++ EL EDEF+ +L M+ +G G V +
Sbjct: 74 LEGLDIREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVSDIL 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILID 163
G+ +L +K ++ F LIPF + V ++V+ + +I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVD 177
>gi|297242900|ref|ZP_06926838.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
gi|296889111|gb|EFH27845.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
Length = 199
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 20 LLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWILL 79
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-------FDRQGKYW 116
F N + A L +LY +D + E E+ ++ DL ++ K
Sbjct: 80 FEESQNRNDAEALNGTELYVHAEDAQ-ELAAENAWYIKDLVGLQARLCEENQLGLTPKVI 138
Query: 117 GQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + GA S+L+I+ + KT L+PF + V EV++ + IDP
Sbjct: 139 GKVVDVLD-GAQSLLKIRLDHPIDEENKTALVPFVEAIVPEVDVANGYLTIDP 190
>gi|311030152|ref|ZP_07708242.1| 16S rRNA-processing protein RimM [Bacillus sp. m3-13]
Length = 172
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 24/167 (14%)
Query: 16 THGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IATFSGID 68
THG+ GEV + S + P + + Y+ ND + + + R +K F + TF G
Sbjct: 13 THGIKGEVRVVSRTDFPDERYKKGNLLYLFLPNDKEPVEVKVASRRVHKSFDLLTFEGFH 72
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL--------EEMETFDRQGKYWGQVC 120
N++ + + + ELEE E++ ++ E ME G V
Sbjct: 73 NVNEVEKFKGAIIKVPEDQLG--ELEEGEYYFHEIVGCKVILQETMEEI-------GTVK 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V GA + I+ K LIP+ V +V++QE I+I+P+
Sbjct: 124 EVLTPGANDVWVIQAKKGKDILIPYIDQVVKKVDVQEKTIIIEPLEG 170
>gi|239631959|ref|ZP_04674990.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066645|ref|YP_003788668.1| rimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
gi|239526424|gb|EEQ65425.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300439052|gb|ADK18818.1| RimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
Length = 172
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+ TI THG+ GEV + + P D + V + + ++ R++K + TF
Sbjct: 7 IGTIVNTHGIRGEVRVLVTTDFPADRFKVGNIVYVATSPKTALTIQSVREHKGLTLLTFK 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+I+ + KL + L+E ++ D+ + D QG+ G+V + +
Sbjct: 67 DYTDINQVLPFKGKKLQVTETAL--QPLDEGSYYYKDIIGLTVIDEQGQTLGKVNEILSP 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
G + I + + L+PF K V ++L +
Sbjct: 125 GPNDVWVIPRSGKSDILLPFLKSVVQSIDLDQ 156
>gi|157164206|ref|YP_001466986.1| 16S rRNA processing protein RimM [Campylobacter concisus 13826]
gi|171855062|sp|A7ZDX8|RIMM_CAMC1 RecName: Full=Ribosome maturation factor rimM
gi|112800951|gb|EAT98295.1| 16S rRNA processing protein RimM [Campylobacter concisus 13826]
Length = 176
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+V +ATIG GL G + + + ++ P + + + N + I+K Y + K + F
Sbjct: 5 IVEVATIGRCVGLKGYLKLHNKSDFPEQFKKGATFFDKNDDQLIIKDYNRQKELV-LFEK 63
Query: 67 IDNIHSASELRDLKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
D++ A L + +Y ++ K+ +L++DEFF D+ ++ + G+ G V + +
Sbjct: 64 FDDLDLAKTLVNKTIYTTKELTRKNCKLKKDEFFQFDIIGLKVVE-NGEILGIVEDIQDN 122
Query: 126 GAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILI 162
A S+L IK K F IP+ + + VNL +IL+
Sbjct: 123 FANSLLYIKTDEVLIAAGKPKNFYIPYLERFIESVNLDSGEILV 166
>gi|315651819|ref|ZP_07904823.1| 16S rRNA processing protein RimM [Eubacterium saburreum DSM 3986]
gi|315485949|gb|EFU76327.1| 16S rRNA processing protein RimM [Eubacterium saburreum DSM 3986]
Length = 180
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 31/169 (18%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK----------- 58
+ I ++HG+ GE + Y + NR +I K+Y K
Sbjct: 18 VGVITSSHGIKGEAKV------------YPTSDDSNRLKKIKKVYADIKGVETVLDIETV 65
Query: 59 RF-----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
RF + F + LR+ L+ R + L+++E + DL +E D G
Sbjct: 66 RFQKNMALVKFKQFNTPEEIQALRNTDLFVDRDNAI--PLKKNENYIADLIGLEVTDEDG 123
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V+ GA ++E+ + EK L P+ +L+VNL+E +I +
Sbjct: 124 IILGKVTDVFPTGANHVMEV-DMGEKKVLFPYISQCILDVNLEEGEIRV 171
>gi|239908104|ref|YP_002954845.1| probable 16S rRNA processing protein RimM [Desulfovibrio magneticus
RS-1]
gi|239797970|dbj|BAH76959.1| probable 16S rRNA processing protein RimM [Desulfovibrio magneticus
RS-1]
Length = 184
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR--ILKMYRKNK- 58
K +++ + HG+ GE+ +DS+A++P R + +D R +++ R ++
Sbjct: 5 KYIIVGVVARPHGVRGELVVDSHADSPTYFARGSTLRLSPPSDPGRGRDYVVRAARPHQD 64
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY--- 115
R + T + + +A LR L + EDE F DL +
Sbjct: 65 RILITLDNVPDRTAADALRGLAICVPADRLV--AAAEDEVFLHDLPGLRVRLADAAPTDP 122
Query: 116 -WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G + V ++G I I++ + L P T V +V+L + IDP
Sbjct: 123 DLGVIEDVRDYGGPEIWVIRDAKGREILFPATDDFVPDVDLDAGVVTIDP 172
>gi|172040481|ref|YP_001800195.1| 16S rRNA-processing protein RimM [Corynebacterium urealyticum DSM
7109]
gi|209573573|sp|B1VG72|RIMM_CORU7 RecName: Full=Ribosome maturation factor rimM
gi|171851785|emb|CAQ04761.1| 16S rRNA processing protein [Corynebacterium urealyticum DSM 7109]
Length = 194
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 26/174 (14%)
Query: 17 HGLNGEVYIDSYANN-----PIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIH 71
HG+ GEV +D ++ I + + R+L + M R R + TF I +
Sbjct: 13 HGVKGEVVVDPSTDHVPERFAIGEALRAVQTGKERQLTVTGMRRHQNRLLVTFEEIRDRD 72
Query: 72 SASELRDLKLYAKR------QDFKDEELEEDEFFNTDLEEMETFDRQGKYW--------G 117
A LR + A + D EL N + +T +R+ G
Sbjct: 73 EAESLRGARFMAAPLHDDSDDGYYDHELIGLRVLNVGSVDADTANRRAYEGEQPEPVDIG 132
Query: 118 QVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+V GV + AG+ LE+ T T LIPF V V+L +++ P
Sbjct: 133 EVTGVSHGPAGATLEVAVDADADLPTAGSTILIPFKLAIVPIVDLDNEALVVTP 186
>gi|20807906|ref|NP_623077.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter
tengcongensis MB4]
gi|22001901|sp|Q8R9X3|RIMM_THETN RecName: Full=Ribosome maturation factor rimM
gi|20516473|gb|AAM24681.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter
tengcongensis MB4]
Length = 168
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN----RELRILKMYRKNKRFIA 62
+ + + HG+ GE+ + N P D+ ++ + E+ +K+ K +
Sbjct: 7 VGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSKG-MVLL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+ + A +L+ L L ++ +LEEDE+F TDL M+ + +G+ G + V
Sbjct: 66 KLKGIDSRNDAEKLKGLFLKVDAENAL--KLEEDEYFITDLIGMKVYTEEGELIGTLEEV 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + +K E+ L+P K + +V++ E K++I + GL
Sbjct: 124 LQTGANDVYVVK-AKEREVLLPAIKEVIKKVDV-EGKVMIVRLLEGL 168
>gi|78776654|ref|YP_392969.1| 16S rRNA processing protein RimM [Sulfurimonas denitrificans DSM
1251]
gi|109893067|sp|Q30TE7|RIMM_SULDN RecName: Full=Ribosome maturation factor rimM
gi|78497194|gb|ABB43734.1| 16S rRNA processing protein RimM [Sulfurimonas denitrificans DSM
1251]
Length = 179
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIAT 63
+KL+ +ATIG + GL G++ + ++ P + V + N+N L + + ++R +
Sbjct: 6 NKLLHIATIGKSVGLGGDMKLHIKSDFPEQFKKGVSFFINENETLTLSDI--NHERALIK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQV--- 119
F G ++ A +L + LY + + E LE+DE+F D+E + GK G V
Sbjct: 64 FVGYNSPEDAKKLTNKNLYTTIERTRKECRLEKDEYFWFDIEGCSVVE-DGKVLGIVDEL 122
Query: 120 --CGVYNFGAGSILE--IKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ N+ E +K+ K+FLIPF + + +++E I +
Sbjct: 123 DRMGITNYLCVITDETLVKSGFAKSFLIPFREPFTINTDIKEKIITV 169
>gi|257886946|ref|ZP_05666599.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257898133|ref|ZP_05677786.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
gi|257823000|gb|EEV49932.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257836045|gb|EEV61119.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
Length = 174
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L+ + + + +K +RK+K F +
Sbjct: 7 VGKIVNTQGIKGEVRVISTTDFPEE--RYKKGTVLTLFQDGKAPVELTVKSHRKHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + RD L + + D L E+EF+ ++ + + G G+V
Sbjct: 65 LSFEGHPSINDVEKYRDGILKVSKDNSVD--LAENEFYYHEIIGLRVVEEDGTELGKVKE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ + L+P+ V EV+L+ + ++ I GL
Sbjct: 123 ILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVE-IPEGL 169
>gi|116495081|ref|YP_806815.1| 16S rRNA-processing protein RimM [Lactobacillus casei ATCC 334]
gi|191638584|ref|YP_001987750.1| 16S rRNA-processing protein RimM [Lactobacillus casei BL23]
gi|227534906|ref|ZP_03964955.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|122263502|sp|Q038J9|RIMM_LACC3 RecName: Full=Ribosome maturation factor rimM
gi|238693051|sp|B3WEU1|RIMM_LACCB RecName: Full=Ribosome maturation factor rimM
gi|116105231|gb|ABJ70373.1| 16S rRNA processing protein RimM [Lactobacillus casei ATCC 334]
gi|190712886|emb|CAQ66892.1| Probable 16S rRNA-processing protein rimM [Lactobacillus casei
BL23]
gi|227187662|gb|EEI67729.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|327382625|gb|AEA54101.1| 16S rRNA processing protein RimM [Lactobacillus casei LC2W]
gi|327385821|gb|AEA57295.1| 16S rRNA processing protein RimM [Lactobacillus casei BD-II]
Length = 172
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+ TI THG+ GEV + + P D + V + + ++ R++K + TF
Sbjct: 7 IGTIVNTHGIRGEVRVLVTTDFPADRFKVGNTVYVATSPKTALTIQSVREHKGLTLLTFK 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+I+ + KL + L+E ++ D+ + D QG+ G+V + +
Sbjct: 67 DYTDINQVLPFKGKKLQVTETAL--QPLDEGSYYYKDIIGLTVIDEQGQTLGKVNEILSP 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
G + I + + L+PF K V ++L +
Sbjct: 125 GPNDVWVIPRSGKSDILLPFLKSVVQSIDLDQ 156
>gi|157362993|ref|YP_001469760.1| 16S rRNA processing protein RimM [Thermotoga lettingae TMO]
gi|166985971|sp|A8F3G2|RIMM_THELT RecName: Full=Ribosome maturation factor rimM
gi|157313597|gb|ABV32696.1| 16S rRNA processing protein RimM [Thermotoga lettingae TMO]
Length = 168
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSND----NRELRILKMYRKNKRFI 61
V++ I THGL G V + N + V ND L+I ++ + K F+
Sbjct: 5 VVIGKITKTHGLFGSVKVLPLTNALEVFQKLENVFIKNDAQSNTHRLQIEEIRKAGKGFL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
FSGID+ A ++ L L + D + +E++ +L +E D+ G + G+V
Sbjct: 65 IKFSGIDDEERARKIVGLSLAVRVTDLPKPK-SPNEYYYYELLNVEVLDQSGNFIGRVED 123
Query: 122 VYNFGAGSILEIKN 135
+ G+ + +KN
Sbjct: 124 IIQTGSNEVAVVKN 137
>gi|328957320|ref|YP_004374706.1| 16S rRNA-processing protein RimM [Carnobacterium sp. 17-4]
gi|328673644|gb|AEB29690.1| 16S rRNA-processing protein RimM [Carnobacterium sp. 17-4]
Length = 171
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-----NDNRELRILKM--YRKNKRF-I 61
+ I T G+ GEV + S + P + RY S D + + L + +RK+K F I
Sbjct: 7 VGKIVNTQGIKGEVRVISKTDFPEE--RYKKGSTLSLFQDGKLVTDLTVASHRKHKNFDI 64
Query: 62 ATFSGIDNIHSASELRD--LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+F NI+ + RD LK+ R EL ++EF+ + + D + G++
Sbjct: 65 LSFENHPNINDVEKYRDGILKVSEDRL----TELPKNEFYLHQIVGLTVQDEEKNTIGKI 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + GA + I+ +K LIP+ + VLEV+L EN+++ + GL++
Sbjct: 121 SEVMSPGANDVWVIERPKKKDLLIPYIEEVVLEVDL-ENQMVTIHMMEGLDD 171
>gi|308068629|ref|YP_003870234.1| 16S rRNA processing protein rimM [Paenibacillus polymyxa E681]
gi|305857908|gb|ADM69696.1| Probable 16S rRNA processing protein rimM [Paenibacillus polymyxa
E681]
Length = 171
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 25/174 (14%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK------- 56
+ +L + I THG+ GE+ I + + P D R+ S EL I+ K
Sbjct: 1 MQQLFNVGKIVNTHGIRGELKILTTTDFPED--RFAKGS----ELLIVPAEGKAPIPVTV 54
Query: 57 -NKRF-----IATFSGIDNIHSASELRD--LKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
RF +A F NI+ + + LK+ A+R ELEE+EF+ ++ ME
Sbjct: 55 ETARFQKNMVVAKFKEYHNINEVEKYKGTLLKVSAERLG----ELEENEFYFHEVVGMEV 110
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G G V + GA + +K K L+P+ + +L+VN++E ++ +
Sbjct: 111 VTEDGNELGVVKEILTPGANDVWVVKMPKGKELLLPYIEDVILDVNVREKRVTV 164
>gi|118617623|ref|YP_905955.1| 16S rRNA-processing protein RimM [Mycobacterium ulcerans Agy99]
gi|166226457|sp|A0PQ65|RIMM_MYCUA RecName: Full=Ribosome maturation factor rimM
gi|118569733|gb|ABL04484.1| 16S rRNA processing protein RimM [Mycobacterium ulcerans Agy99]
Length = 174
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR----------ILKMYRKN-KRFIATF 64
HG+ GEV ++ + P +R R R +++ R++ R +
Sbjct: 11 AHGITGEVVVEIRTDEP---DRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGARLLVRL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+G+++ +A LR D E E D +++ LE + G+ G V V +
Sbjct: 68 AGVNDRDTADGLRGSLFVIDSADLPPIE-EPDTYYDHQLEGLRVRTTAGQDVGVVAEVLH 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG +L +K + L+PF V V+L + + IDP
Sbjct: 127 TGAGELLAVKCDSGE-VLVPFVGAIVTSVSLDDRILEIDP 165
>gi|227878847|ref|ZP_03996754.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
gi|227861595|gb|EEJ69207.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
Length = 183
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A I T HGLNGEV + + P D + ++ + ++ + R K+F + F+
Sbjct: 18 VARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 77
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 78 EITDIDQAEKLKGKILVVSEADRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 135
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 136 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVE 174
>gi|256849813|ref|ZP_05555244.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
gi|256713302|gb|EEU28292.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
Length = 171
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRF-IATFS 65
+A I T HGLNGEV + + P D + ++ + ++ + R K+F + F+
Sbjct: 6 VARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEADRG--ELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA I + K + IP V +V++ K+ ++
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVE 162
>gi|222528964|ref|YP_002572846.1| 16S rRNA-processing protein RimM [Caldicellulosiruptor bescii DSM
6725]
gi|312127970|ref|YP_003992844.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
hydrothermalis 108]
gi|254797740|sp|B9MQW9|RIMM_ANATD RecName: Full=Ribosome maturation factor rimM
gi|222455811|gb|ACM60073.1| 16S rRNA processing protein RimM [Caldicellulosiruptor bescii DSM
6725]
gi|311777989|gb|ADQ07475.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
hydrothermalis 108]
Length = 169
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 6/169 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
K + + I T GL GEV + + +L +L N + +L I + K+ I
Sbjct: 3 KYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIVII 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I +I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++ V
Sbjct: 63 KFKEISSIDEAQKLKNRYIVIERERAK--KLPKDTYFICDIIGLEVYDLDGRKLGRIKDV 120
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ + + + +K LIP K V EVN++E + I + L+
Sbjct: 121 LKTGSNDVYICDSYIGKKDILIPALKEIVKEVNIEEGYMKIKVVEGLLD 169
>gi|325694637|gb|EGD36545.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK150]
gi|328946423|gb|EGG40564.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1087]
Length = 224
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N+ L+ ++ + +++ +RK K F I
Sbjct: 58 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNKLALFDKKDQFVMDVEIASHRKAKNFDII 117
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 118 KFKGMYHINDIEKFRDFSLKVAEEDLAD--LEDGEFYYHEIIGLEVYEND-VLLGTIKEI 174
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 175 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDD 222
>gi|138894721|ref|YP_001125174.1| 16S rRNA-processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
gi|166226443|sp|A4IM75|RIMM_GEOTN RecName: Full=Ribosome maturation factor rimM
gi|134266234|gb|ABO66429.1| 16S rRNA processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
Length = 175
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ D + + +K +R +K F +
Sbjct: 10 VGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLL 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G D+I+ + L EL E E++ ++ + G+ G+V +
Sbjct: 70 SFEGYDSINDVEPFKGAMLKVPESQLG--ELNEGEYYFHEIIDCTVVTEAGETIGKVKEI 127
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ LIP+ V+ V+ + I+I P+ L
Sbjct: 128 LTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLL 174
>gi|147678055|ref|YP_001212270.1| RimM protein, required for 16S rRNA processing [Pelotomaculum
thermopropionicum SI]
gi|189040846|sp|A5D1J5|RIMM_PELTS RecName: Full=Ribosome maturation factor rimM
gi|146274152|dbj|BAF59901.1| RimM protein, required for 16S rRNA processing [Pelotomaculum
thermopropionicum SI]
Length = 170
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
++Y I F I+++ +A +L+ L R + L ED F+ D+ ++ +D
Sbjct: 54 EVYHHKNFIIIKFKEIESMAAAEKLKGAFLEVGRDELVP--LPEDRFYIFDIIGLKVYDT 111
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ G+V V GA + + +T K LIP K V VNL E K++++
Sbjct: 112 GGRNLGRVTDVLQTGANDVY-VVDTGGKPLLIPALKQVVKSVNLTEGKMVVE 162
>gi|319639238|ref|ZP_07993989.1| 16S rRNA-processing protein rimM [Neisseria mucosa C102]
gi|317399422|gb|EFV80092.1| 16S rRNA-processing protein rimM [Neisseria mucosa C102]
Length = 169
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M K V M I G+ G + I + Y ++ +D + L D + L + K
Sbjct: 1 MTDTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQL-CKDGKTLNVTLEAGKI 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F EEDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFA--PTEEDEYYWADLVGMTVINKENIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L IK + LIPF + V+ I+ D
Sbjct: 118 LGKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIIAD 164
>gi|307721673|ref|YP_003892813.1| 16S rRNA processing protein RimM [Sulfurimonas autotrophica DSM
16294]
gi|306979766|gb|ADN09801.1| 16S rRNA processing protein RimM [Sulfurimonas autotrophica DSM
16294]
Length = 181
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+KL+ +ATIG T G+ G++ + P + + + +E +L + R +
Sbjct: 8 NKLLHIATIGKTVGIKGDMKFHIKCDFPEQFVKGSTFLINKKESIMLSEVDLD-RGLVRI 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ I N+ A + + KL+ +D K+ LEE E+F DLE+ E ++ K G V +
Sbjct: 67 NNITNLEDAKKFTNAKLFTTYEDTRKNCHLEEGEYFWFDLEDCEVYE-DSKCLGVVKEIE 125
Query: 124 NFGAGSILEI-------KNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + L I +N + K+FL+PF + + V++ + +I +
Sbjct: 126 RLNSTNYLSIVTYESLVQNGLPKSFLVPFIEPFKVAVDVDKKRITL 171
>gi|261419400|ref|YP_003253082.1| 16S rRNA-processing protein RimM [Geobacillus sp. Y412MC61]
gi|297530625|ref|YP_003671900.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|319766215|ref|YP_004131716.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
gi|261375857|gb|ACX78600.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC61]
gi|297253877|gb|ADI27323.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|317111081|gb|ADU93573.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
Length = 172
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ D + + +K +R +K F +
Sbjct: 7 VGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRERDTEPIEVTVKSHRVHKSFDLL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G D+I+ + L EL E E++ ++ G+ G V +
Sbjct: 67 SFEGYDSINDVERFKGAMLKVPESQLG--ELAEGEYYFHEIIGCTVVTEGGETIGAVKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ LIP+ VL V+ + I+I P+ L
Sbjct: 125 LTPGANDVWVVRREDGSEALIPYIDEVVLHVDPERKTIIIRPMEGLL 171
>gi|222151071|ref|YP_002560225.1| 16S rRNA processing protein homolog [Macrococcus caseolyticus
JCSC5402]
gi|254797754|sp|B9EBB8|RIMM_MACCJ RecName: Full=Ribosome maturation factor rimM
gi|222120194|dbj|BAH17529.1| 16S rRNA processing protein homolog [Macrococcus caseolyticus
JCSC5402]
Length = 165
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 10 MATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATF 64
+ I THG+ GEV I +A + ++ N + + +K YR +K F + F
Sbjct: 5 VGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFHMLAF 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G++NI+ + + L +Y + ++ +D L+E+E+F +D+ FD + + G V ++
Sbjct: 65 EGLNNINDVEKYKGLDVYQEIEN-EDIILDENEYFYSDIIGCTVFDGE-REIGIVNDIFE 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAV 150
GA + ++ +K +LIP+ + V
Sbjct: 123 TGANDVWVVQG--DKEYLIPYIEDVV 146
>gi|134299898|ref|YP_001113394.1| 16S rRNA processing protein RimM [Desulfotomaculum reducens MI-1]
gi|172044314|sp|A4J666|RIMM_DESRM RecName: Full=Ribosome maturation factor rimM
gi|134052598|gb|ABO50569.1| 16S rRNA processing protein RimM [Desulfotomaculum reducens MI-1]
Length = 169
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
++ + + + T G+ GEV I + P + VL R+ I +++ +
Sbjct: 3 EEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQFI 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I FS I ++ +A +L+ L ++ L E ++ + ++ D + G V
Sbjct: 63 IIKFSEIPDMTAAEKLKGGLLQVTMEELVP--LPEGNYYIFQIVGLKVVDENEQELGTVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V GA + +K + K LIP K V E+N+ E K+ ++
Sbjct: 121 QVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKMKVE 163
>gi|331269651|ref|YP_004396143.1| 16S rRNA processing protein RimM [Clostridium botulinum BKT015925]
gi|329126201|gb|AEB76146.1| 16S rRNA processing protein RimM [Clostridium botulinum BKT015925]
Length = 162
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+++ + + I THGL GE+ + + D+ R+ D + I + +
Sbjct: 1 MEQFLAVGKIINTHGLKGEIKLLPSTD---DVERFKELKKAYIDGEVIEIEGCKFQPGKV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I +D+I A L++ + R+D +L ED ++ D+ +D + G+V
Sbjct: 58 ILKIKDVDSIEQAQRLKNKYIKVTREDAA--KLPEDCYYEADIVGCTVYDENDEELGKVD 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ G+ + IK E LIP K ++ +++ KI+I P+
Sbjct: 116 EIIRTGSNDVYWIKGKNE--VLIPAIKSVIVSIDVNSKKIVIKPL 158
>gi|196247660|ref|ZP_03146362.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
gi|196212444|gb|EDY07201.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
Length = 173
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 9/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ D + + +K +R +K F +
Sbjct: 8 VGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G D+I+ + L EL E E++ ++ + G+ G+V +
Sbjct: 68 SFEGYDSINDVEPFKGAMLKVPESQLG--ELNEGEYYFHEIIDCTVVTEAGETIGKVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ LIP+ V+ V+ + I+I P+ L
Sbjct: 126 LTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLL 172
>gi|332652593|ref|ZP_08418338.1| 16S rRNA processing protein RimM [Ruminococcaceae bacterium D16]
gi|332517739|gb|EGJ47342.1| 16S rRNA processing protein RimM [Ruminococcaceae bacterium D16]
Length = 165
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRF-IATFSGI 67
+ + HGL GEV + +A++P L R+ LY + ++ R +K I F G+
Sbjct: 8 VGKVTNVHGLMGEVRVQPWADSPDFLCRFKTLYVDKTHWPIEVERARVHKNMVIIKFHGV 67
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVYNFG 126
+++ A +R+ LY R D L + FF D+ +E D Q + G+V +
Sbjct: 68 TDVNGALAMRNAILYIDRD---DANLPKGSFFLADIYGLEVRDAQTDEVLGKVDDILTPP 124
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
A ++ ++ ++ +IP V E+N+ E
Sbjct: 125 ANNVYVVRGG-KREIMIPAVDQFVKEINVDEG 155
>gi|288942188|ref|YP_003444428.1| 16S rRNA processing protein RimM [Allochromatium vinosum DSM 180]
gi|288897560|gb|ADC63396.1| 16S rRNA processing protein RimM [Allochromatium vinosum DSM 180]
Length = 169
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+++ + +G+ G V + S + + RY L D R+ + K +A
Sbjct: 10 IVLGRVSGLYGVKGWVKVYSETDPREGILRYSPWLLGPDGVARRVAEGRMHGKGLVARLD 69
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G ++ A+ L ++ +R DEF+ DLE + + G +G+V +++
Sbjct: 70 GCEDRDQAAALIGQEIAIRRDQLPPPR--PDEFYWIDLEGLAVVTQAGVEFGRVSHLFST 127
Query: 126 GAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
GA +L ++ E+ LIPF +L+V+ + I +D
Sbjct: 128 GANDVLVVQGERER--LIPFVWGDVILDVDFDQRLIRVD 164
>gi|297539670|ref|YP_003675439.1| 16S rRNA processing protein RimM [Methylotenera sp. 301]
gi|297259017|gb|ADI30862.1| 16S rRNA processing protein RimM [Methylotenera sp. 301]
Length = 189
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 7 LVLMATIGTTHGLNGEVYI--DSYA-NNPIDLNRYVLYSNDN-RELRILKMYRKNKRFIA 62
+V+M I +G+ G + I D+ A + D + + L D+ RE+ + N +
Sbjct: 11 MVVMGRIVAPYGVFGWLKIVPDTEAFDGLFDYDTWWLGKGDDWREMVVETAKTHNDVLVV 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+ +A + ++ R+ E EE+E++ +DL + ++Q +G + V
Sbjct: 71 KLKGIDDRDAALACKGKQIAVPREQLP--EAEENEYYWSDLIGLRVKNKQDVDFGLIVDV 128
Query: 123 YNFGAGSILEIKNTMEKT---------------FLIPFTKFAVLEVNLQENKILID 163
+ GA ++ ++ + ++ LIPF VLEV+L +L+D
Sbjct: 129 FETGANDVIAVRADVIQSEDSTVKAVAKEKPQERLIPFIDDVVLEVDLAAKTMLVD 184
>gi|332362172|gb|EGJ39974.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK49]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ +R + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDRFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G++ +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYE-DDVLLGRIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|283956121|ref|ZP_06373608.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792441|gb|EFC31223.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 1336]
Length = 179
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y + + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEILKIKHYNASNSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVVD 120
Query: 122 VYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ K F +P+ V +++++ +I
Sbjct: 121 ILEIGASYLFEIQSDEKWVNKKYSKIFFVPYLDKFVKNIDIEKRQIF 167
>gi|116074427|ref|ZP_01471689.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
gi|116069732|gb|EAU75484.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
Length = 187
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR----ELRILKMYRKN 57
D L + +G GL GE+ I+ + P D L + + EL+ +
Sbjct: 17 DWLPVGKVVGV-QGLKGELRINPASEFPERFTDPGSRWLKARGSAPREMELKSGRQLPGR 75
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYW 116
F+ F+GIDN +A L L D ELEE EF DL +E G
Sbjct: 76 SVFVVRFAGIDNREAAEALIGQTLMVPADDRP--ELEEGEFHLLDLVGLEARLSADGDAI 133
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G V + + G +LE+K T ++PF + V EV++ +
Sbjct: 134 GTVSDLIS-GGNELLELKTPDGDTLMVPFVEAIVPEVHVDDG 174
>gi|42568351|ref|NP_568663.2| 16S rRNA processing protein RimM family [Arabidopsis thaliana]
gi|10177579|dbj|BAB10810.1| unnamed protein product [Arabidopsis thaliana]
gi|332008000|gb|AED95383.1| RimM-like 16S rRNA processing protein [Arabidopsis thaliana]
Length = 653
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSN-------DNRELRILKMY 54
LV + + HGL GE+ I + P DL R L D EL + +
Sbjct: 80 LVEVGFLSGVHGLQGEICIKPNTDFP-DLRFSKPGRRWLKQQLLGQDKIDEVELVEGRPH 138
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
K +I F G+D++ +L L A+ D EL+E EF++ DL M ++ G
Sbjct: 139 PAQKSWILKFRGLDDVDQVRQLVGATLLAEDDD--RPELDEGEFYSRDLVGMRVLLKETG 196
Query: 114 KYWGQVCGVYNFGAGSIL--------EIKNTMEKT---FLIPFTKFAVLEVNLQENKILI 162
+ G V +++ G +L E+ N KT IPF V +V+L+ ++ I
Sbjct: 197 QLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTNQLVWIPFVDAIVPDVDLERKEMYI 256
Query: 163 DPIAAGLNNTTMK 175
P GL M+
Sbjct: 257 TP-PKGLLEVNMR 268
>gi|188585997|ref|YP_001917542.1| 16S rRNA processing protein RimM [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229564324|sp|B2A2N9|RIMM_NATTJ RecName: Full=Ribosome maturation factor rimM
gi|179350684|gb|ACB84954.1| 16S rRNA processing protein RimM [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 179
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYA---NNPIDLNR-YVLYSNDNRELRILKM---YRKNKR 59
LV + I THG+ GE+ + S N +L+R Y++ D+ + I + +
Sbjct: 7 LVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESSFTHKNM 66
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I FS D+I+ D + R++ +LEEDE++ + + + ++ G V
Sbjct: 67 EIVKFSEWDDINQVEGFHDWYIKIPREERP--QLEEDEYYFDQITGLSVVTVEDEFLGTV 124
Query: 120 CGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+Y G+ + E+ K +K LIP V +++L E +++D + GL
Sbjct: 125 TNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKIDLDEQIMIVD-LPEGL 174
>gi|125718119|ref|YP_001035252.1| 16S rRNA-processing protein RimM [Streptococcus sanguinis SK36]
gi|166226482|sp|A3CNE7|RIMM_STRSV RecName: Full=Ribosome maturation factor rimM
gi|125498036|gb|ABN44702.1| RimM protein, required for 16S rRNA processing, putative
[Streptococcus sanguinis SK36]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N+ L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNKLALFDKKDQFVMDVEIASHRKAKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFSLKVAEEDLAD--LEDGEFYYHEIIGLEVYEND-VLLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDD 170
>gi|297626597|ref|YP_003688360.1| 16S rRNA processing protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922362|emb|CBL56934.1| 16S rRNA processing protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 183
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFIATF 64
V++A IG HG+ GE+ + + P R + S+ +R + + R + T
Sbjct: 6 VVVAVIGRAHGVRGELTLTVRTDEPDRRLRKGVRLRASDPDRSFVVESARWVSGRLVVTL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEED--EFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ + ++A LR L+A D +E ED EF++ L M + G V V
Sbjct: 66 GGVADRNAAEALRGTVLFA---DVPRDERPEDSEEFYDRQLIGMAVELADQRRVGVVSDV 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ A +L ++ T L+PF + V V+ + +
Sbjct: 123 LHLPAQDVLSVR-TDAGERLVPFVRELVPHVDAEAGVV 159
>gi|50955113|ref|YP_062401.1| 16S rRNA processing protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|59798682|sp|Q6AEA0|RIMM_LEIXX RecName: Full=Ribosome maturation factor rimM
gi|50951595|gb|AAT89296.1| 16S rRNA processing protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 217
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 16/160 (10%)
Query: 16 THGLNGEVYIDSYANNP-----------IDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
HGL G + ++ + + P + + + LR L+ Y N + F
Sbjct: 28 AHGLKGAIKLELFTDEPGKRFVPGAVFTLQVPTASKWHGKTLALRELRWY--NGHPVGFF 85
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ A L L+ QD ++ EED +++ L + R G G + V +
Sbjct: 86 DGVDDRTEAESLVKAILWVN-QDVRELPDEEDAWYDNQLVGLSAH-RDGAVVGAIVRVDH 143
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+L IK T L+PF K V EV+L + + P
Sbjct: 144 LPGQDLLAIK-TPGGEVLVPFVKAIVPEVDLAARTVTLTP 182
>gi|224370182|ref|YP_002604346.1| RimM [Desulfobacterium autotrophicum HRM2]
gi|223692899|gb|ACN16182.1| RimM [Desulfobacterium autotrophicum HRM2]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANN----PIDLNRYVLYSNDNREL-RILKMYRKNKRFI 61
L + + HGL G + + S+A + L V S E ILK K +
Sbjct: 5 LFTLGVVTGVHGLKGFLKVRSFAGSLETFKSGLEMVVRRSGKADECYTILKASPHKKGIL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
FSG+D +A +L R+ E E+D +F DL ++ DR + G +
Sbjct: 65 MQFSGVDR-DAAETFVGAELLVDRRLLP--EPEDDAYFWEDLIGLKVTDRTLGFLGTIDS 121
Query: 122 VYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ + +KN K FLIP V+ V+L+ ++ +D
Sbjct: 122 IMETGSNDVFVVKNKDKGLKNKEFLIPGLASVVIGVDLERGEMTVD 167
>gi|312134786|ref|YP_004002124.1| 16S rRNA processing protein rimm [Caldicellulosiruptor owensensis
OL]
gi|311774837|gb|ADQ04324.1| 16S rRNA processing protein RimM [Caldicellulosiruptor owensensis
OL]
Length = 169
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
K + + I T GL GEV + + +L +L N + +L I + K+ I
Sbjct: 3 KYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIVII 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I +I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++ V
Sbjct: 63 KFKEISSIDEAQKLKNRYIVIERERAK--KLPKDTYFICDIIGLEVYDLDGRKLGRIKDV 120
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQE 157
G+ + + + +K LIP K V EVN++E
Sbjct: 121 LKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEE 156
>gi|256379918|ref|YP_003103578.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
gi|255924221|gb|ACU39732.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--------NDNRELRILKMYRKNKR 59
V++ + HG+ GE+ +D ++P R+ L S +R+L + + R
Sbjct: 3 VVVGRVAKAHGIRGELAVDVRTDSP--EARFALGSVLAAKLRDGTSRDLTVAAARYHSGR 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + A LR L + + DEF++ LE + G G V
Sbjct: 61 LLVRFEEVLTRDVAELLRGTLLLGSTDALPPTD-DPDEFYDHQLEGLAAELADGTRIGTV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + G +L + L+PF + V V++ ++++DP
Sbjct: 120 KEIVHGPGGELLVLVREDGSEALVPFVRQIVPTVDVAGGRVVVDP 164
>gi|258406143|ref|YP_003198885.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
gi|257798370|gb|ACV69307.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
Length = 182
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNR-YVLYSNDNRELRILKMYRKNK-RF 60
+LV + I GL GEV ++ +A+ P L R Y+ + + + +R +K R
Sbjct: 5 RLVPIGRIAKPLGLRGEVCLEPHADFPFVFASLERIYLQFERRRPKPYAVLSHRVHKGRD 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GI+ +A +R ++ A+ +D E ++ DL G + G+V
Sbjct: 65 VLLLHGIEGRDAAESIRGREVLARARDLP--EPDDAVLLRQDLPGCRVELEDGAWVGEVL 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
V + A + I + L P + VL+V+L+ ++I P GL + + N
Sbjct: 123 EVQDNRAQDVWVILGPQGQEILFPVCEAFVLDVDLERRVVVIRP-PEGLLDLYLHN 177
>gi|218132455|ref|ZP_03461259.1| hypothetical protein BACPEC_00314 [Bacteroides pectinophilus ATCC
43243]
gi|217992565|gb|EEC58567.1| hypothetical protein BACPEC_00314 [Bacteroides pectinophilus ATCC
43243]
Length = 169
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRI-LKMYRKNKRF 60
+++ + + I +THG+ GEV + ++P D V+ +++ ++ + K+F
Sbjct: 1 MEQTLRVGVITSTHGIRGEVKVFPTTDDPKRFDYLEEVIVDMKREPVKLEIEGVKYFKQF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + L R++ ELE+ EFF DL ++ +G G +
Sbjct: 61 VILKFKGYDNINDIQQFVKKDLLVTRENAV--ELEDGEFFICDLVGLKVVTDEGVELGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA + + K LIP +LE N +E I +
Sbjct: 119 KDIMQTGANDVYVVGMNDGKEVLIPSIPQCILEKNPEEGYIRV 161
>gi|307330036|ref|ZP_07609187.1| 16S rRNA processing protein RimM [Streptomyces violaceusniger Tu
4113]
gi|306884297|gb|EFN15332.1| 16S rRNA processing protein RimM [Streptomyces violaceusniger Tu
4113]
Length = 215
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTEPASAGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR++ L A+ D ++ + +EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRSAAEALRNILLIAE-VDPEELPEDPEEFYDHQLIDIDVVTVDGTEVGRISEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ +L +K +IPF V E++L+ + +IDP
Sbjct: 122 HLPYQDLLIVKRPDGGEVMIPFVSEFVPEIDLEAQRAVIDP 162
>gi|68536268|ref|YP_250973.1| 16S rRNA-processing protein [Corynebacterium jeikeium K411]
gi|260578968|ref|ZP_05846871.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
gi|109893009|sp|Q4JV02|RIMM_CORJK RecName: Full=Ribosome maturation factor rimM
gi|68263867|emb|CAI37355.1| 16S rRNA processing protein [Corynebacterium jeikeium K411]
gi|258602942|gb|EEW16216.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
Length = 187
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 17 HGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI-LKMYRKNK-RFIATFSGIDNIH 71
HG+ GEV +D + P + +EL + ++ +R ++ R + TF I +
Sbjct: 12 HGVRGEVVVDPTTDTPELRFATGEVLKGKQAGKELSLTVRSFRPHQGRLLVTFEEIADRT 71
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF------------DRQGKYWGQV 119
+A LR ++ +A DE ++D F++ +LE + + + G G+V
Sbjct: 72 AAESLRGVRFFAA--PVHDE--DDDGFYDHELEGLTAYLLAPGTDLKGDEIQLGDLVGEV 127
Query: 120 CGVYNFGAGSILEI-------KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + AG +L I T K L+PF V V+L+E +++ P
Sbjct: 128 VAVEHTPAGQLLVILIDAESQLPTAGKEVLVPFRHQIVPVVDLEEEILVLTP 179
>gi|312622770|ref|YP_004024383.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203237|gb|ADQ46564.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
kronotskyensis 2002]
Length = 169
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + + +L +L N + +L I + K+ I F
Sbjct: 7 VGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNVVIIKFKE 66
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
I I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++ V G
Sbjct: 67 ISCIDEAQKLKNKYIVIERERAK--KLPKDAYFICDIIGLEVYDLDGRKLGRIKDVLKTG 124
Query: 127 AGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + + +K LIP K V EVN++E + I + L+
Sbjct: 125 SNDVYICDSYIGKKDILIPALKEIVKEVNIEEGYMKIKVVEGLLD 169
>gi|163782681|ref|ZP_02177678.1| hypothetical protein HG1285_17395 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882254|gb|EDP75761.1| hypothetical protein HG1285_17395 [Hydrogenivirga sp. 128-5-R1-1]
Length = 164
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
V++ + T G+ GE+ + +A I N +Y + ++ ++ F+
Sbjct: 4 VVIGRVIDTFGVKGELKVIPFAPVEIFENLSKVYLKRSGGGYIPFKVERVKEHGNAFVIK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G D + A + R L+ ++ E EDEF+ +L ME + +G+ G+V V
Sbjct: 64 LKGYDFLEEADQFRGAHLFLPEKELPPRE--EDEFYAYELVGMEVWTDKGRRLGRVKRVE 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ G +L +++ EKT +IPF VL+V+ + ++
Sbjct: 122 DLGVYDMLILED--EKT-MIPFVGDIVLDVDREGKRV 155
>gi|325267105|ref|ZP_08133774.1| 16S rRNA processing protein RimM [Kingella denitrificans ATCC
33394]
gi|324981458|gb|EGC17101.1| 16S rRNA processing protein RimM [Kingella denitrificans ATCC
33394]
Length = 169
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDN-RELRILKMYRKNKRFIAT 63
V M I G+ G V + + YA++ +D + L N R I
Sbjct: 8 VAMGYIKGAFGVKGWVKVHAGTEYADSLLDYPEWRLTKGGNVRVAEIEASKVAGDELQVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ I++ A+ LR + R++F E EEDE++ DL M +R+ G+V +
Sbjct: 68 FAHINDRDEAALLRGYTIEIARENFA--ETEEDEYYWADLVGMSVVNREQAVLGEVVKLM 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L ++ + LIPF + V+ + KI D
Sbjct: 126 ETGAHDVLVVRGEYGEK-LIPFVSHYIDGVDAENRKITAD 164
>gi|91228774|ref|ZP_01262684.1| 16S rRNA-processing protein [Vibrio alginolyticus 12G01]
gi|262393310|ref|YP_003285164.1| 16S rRNA processing protein RimM [Vibrio sp. Ex25]
gi|269966293|ref|ZP_06180381.1| 16S rRNA-processing protein [Vibrio alginolyticus 40B]
gi|91187681|gb|EAS74003.1| 16S rRNA-processing protein [Vibrio alginolyticus 12G01]
gi|262336904|gb|ACY50699.1| 16S rRNA processing protein RimM [Vibrio sp. Ex25]
gi|269829090|gb|EEZ83336.1| 16S rRNA-processing protein [Vibrio alginolyticus 40B]
Length = 182
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ G T+G+ G + + SY +N + Y + + + E ++ R NK +A
Sbjct: 14 IVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYINQKGKWVEYKVESWKRHNKGMVAK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + + ++ EL EDEF+ +L M+ +G G V +
Sbjct: 74 LEGMDVREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVTDML 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILID 163
G+ +L +K ++ F LIPF + V + V+ + +I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIINVDREAQRIEVD 177
>gi|298252294|ref|ZP_06976097.1| 16S rRNA processing protein RimM [Ktedonobacter racemifer DSM
44963]
gi|297546886|gb|EFH80754.1| 16S rRNA processing protein RimM [Ktedonobacter racemifer DSM
44963]
Length = 198
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 11 ATIG---TTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELR--ILKMYR--KNKRFI 61
ATIG G+ GE+ + + P + V S D + I+ R K +
Sbjct: 10 ATIGKIVALFGVRGELKVLPLTDIPDRFTSLKAVHVSTDGHTFKRCIITSVRPYKGDMLL 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI + + A LRD L+ + +L D ++ D+ ++ + + GQ+
Sbjct: 70 VKLEGITSANDAEALRDQSLWIPESELA--QLPPDSYYQHDILGLKVYTLSNQEVGQIVD 127
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
++ G + ++ K +IP K V ++++ + IDP+ L++ +
Sbjct: 128 LFPTGGNDVYVVRTPERKEVMIPAIKTVVHQIDVLRGVMYIDPLPGLLDDQAV 180
>gi|86606190|ref|YP_474953.1| 16S rRNA-processing protein RimM [Synechococcus sp. JA-3-3Ab]
gi|109893059|sp|Q2JUD0|RIMM_SYNJA RecName: Full=Ribosome maturation factor rimM
gi|86554732|gb|ABC99690.1| 16S rRNA processing protein RimM [Synechococcus sp. JA-3-3Ab]
Length = 186
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRKNKR 59
+L+ + HGL G + + +++ P L R++ +D L + +
Sbjct: 10 LLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGL 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ GI + +A K+ + LE +E+ +DL + + QG+ G V
Sbjct: 70 YLVRLEGIPDRTAAEAWVGAKVLVPAS--QRLPLEPEEYHYSDLIGLAVY-HQGRLLGHV 126
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++ G +LEI ++ LIPF K V V+L++ ++ + P
Sbjct: 127 SAIWAAGQ-DVLEIATPDKRQVLIPFVKALVPVVDLEKGELQVQP 170
>gi|261380055|ref|ZP_05984628.1| 16S rRNA processing protein RimM [Neisseria subflava NJ9703]
gi|284797269|gb|EFC52616.1| 16S rRNA processing protein RimM [Neisseria subflava NJ9703]
Length = 169
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y ++ +D + L D + L ++ K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQL-CKDGKTLNVVLEAGKIVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ A LR + R+ F EEDE++ DL M +++ G+V +
Sbjct: 67 KFEGIDDRDQAFALRGYTIEIPRESFA--PTEEDEYYWADLVGMTVINKENIVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L IK + LIPF + V+ I+ D
Sbjct: 125 METGANDVLMIKGKHGQ-ILIPFVSNYIESVDTDSKTIIAD 164
>gi|21230657|ref|NP_636574.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769348|ref|YP_244110.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. 8004]
gi|24418648|sp|Q8PBC2|RIMM_XANCP RecName: Full=Ribosome maturation factor rimM
gi|81304695|sp|Q4US83|RIMM_XANC8 RecName: Full=Ribosome maturation factor rimM
gi|21112243|gb|AAM40498.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574680|gb|AAY50090.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris str. 8004]
Length = 170
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + S L ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRTPSGQESVLSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F I + + + ++Y R + DE++ DLE ++ +G
Sbjct: 61 QGKNLIAVFPDITDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEGLQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVRGDRER--MIPFVLPEYVKSVDFEANLIVVD 165
>gi|153951260|ref|YP_001398343.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
doylei 269.97]
gi|166226431|sp|A7H4B3|RIMM_CAMJD RecName: Full=Ribosome maturation factor rimM
gi|152938706|gb|ABS43447.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
doylei 269.97]
Length = 179
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y + + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNASNSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVVD 120
Query: 122 VYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ + K F IP+ V +++++ +I
Sbjct: 121 ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQIF 167
>gi|270158991|ref|ZP_06187647.1| 16S rRNA processing protein RimM [Legionella longbeachae D-4968]
gi|289166168|ref|YP_003456306.1| 16S rRNA processing protein RimM [Legionella longbeachae NSW150]
gi|269987330|gb|EEZ93585.1| 16S rRNA processing protein RimM [Legionella longbeachae D-4968]
gi|288859341|emb|CBJ13277.1| putative 16S rRNA processing protein RimM [Legionella longbeachae
NSW150]
Length = 168
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-----LNRYVLYSNDNRELRILKMYRKNKRFIA 62
+++A G HG+ G V + S+ P D N + +N + +++++ ++K I
Sbjct: 7 IIIARFGRPHGVKGFVTVHSFTE-PRDNVLKYTNWHAFINNKWQPIKLMRAEVQSKSIIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G + L ++++ R E+L E++ L M ++QG+ +G+V +
Sbjct: 66 QIEGYSERELVAHLTNIEIAVHRDQL--EKLNPGEYYWHQLIGMNVINQQGETFGKVTEI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPF 145
GA +L ++ K LIP+
Sbjct: 124 IPTGANDVLVVEGN--KRHLIPY 144
>gi|188992534|ref|YP_001904544.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. B100]
gi|229890157|sp|B0RXD8|RIMM_XANCB RecName: Full=Ribosome maturation factor rimM
gi|167734294|emb|CAP52504.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris]
Length = 170
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + S L ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRTPSGQESVLSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F I + + + ++Y R + DE++ DLE ++ +G
Sbjct: 61 QGKNLIAVFPDITDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEGLQVETVEGIK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ E+ +IPF V V+ + N I++D
Sbjct: 119 LGAVSHLFSTGSNDVVVVRGDRER--MIPFVLPEYVKSVDFEANLIVVD 165
>gi|237756216|ref|ZP_04584780.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691626|gb|EEP60670.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 166
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFIATFS 65
L+ + I THG+ G + + + N L + ++ EL+ L + K+ + F
Sbjct: 5 LIAIGKIHGTHGVKGNLKFEIFVKN-FYLPEEIYIKDEENELQPLNIETIDRKKGLIKFK 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
D A E+ +Y + +L EDEF+ L M + K G+V + +
Sbjct: 64 NYDTPEKAKEISHKLIYVPEELLP--KLGEDEFYEFQLIGMNVY-YNDKLIGKVEKIDDR 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + L IK T EKT +PF V +VN++ENK+ I P
Sbjct: 121 LSQAYLIIKCTDEKTRHLPFINEFVKDVNVEENKMQITP 159
>gi|188996312|ref|YP_001930563.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium sp. YO3AOP1]
gi|209573623|sp|B2V7T6|RIMM_SULSY RecName: Full=Ribosome maturation factor rimM
gi|188931379|gb|ACD66009.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium sp. YO3AOP1]
Length = 166
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIATFS 65
L+ + I THG+ G + + + N L + ++ EL+ L + + K+ + F
Sbjct: 5 LIAIGKIHGTHGVKGNLKFEIFVKN-FYLPEEIYIKDEENELQPLNIETVDRKKGLIKFK 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
D A E+ +Y +L EDEF+ L M+ + K G+V + +
Sbjct: 64 NYDTPEKAKEISHRLIYVPEDLLP--KLGEDEFYEFQLIGMDVY-YNDKLIGKVEKIDDR 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + L IK T EKT +PF V +VN++ENK+ I P
Sbjct: 121 LSQAYLIIKCTDEKTRHLPFINEFVKDVNVKENKMQITP 159
>gi|28899306|ref|NP_798911.1| 16S rRNA-processing protein RimM [Vibrio parahaemolyticus RIMD
2210633]
gi|153838717|ref|ZP_01991384.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ3810]
gi|260363660|ref|ZP_05776456.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus K5030]
gi|260879002|ref|ZP_05891357.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AN-5034]
gi|260897212|ref|ZP_05905708.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus Peru-466]
gi|31076894|sp|Q87LS9|RIMM_VIBPA RecName: Full=Ribosome maturation factor rimM
gi|28807530|dbj|BAC60795.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus RIMD
2210633]
gi|149747877|gb|EDM58755.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ3810]
gi|308088448|gb|EFO38143.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus Peru-466]
gi|308089631|gb|EFO39326.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AN-5034]
gi|308111019|gb|EFO48559.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus K5030]
gi|328474161|gb|EGF44966.1| 16S rRNA-processing protein RimM [Vibrio parahaemolyticus 10329]
Length = 182
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ G T+G+ G + + SY +N + Y + + + E ++ R NK +A
Sbjct: 14 IVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYINQKGKWVEYKVESWKRHNKGMVAK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + + ++ EL EDEF+ +L M +G G V +
Sbjct: 74 LEGMDVREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMHVVTTKGYDLGVVTDML 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILID 163
G+ +L +K ++ F LIPF + V ++V+ + +I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVD 177
>gi|52785581|ref|YP_091410.1| 16S rRNA-processing protein RimM [Bacillus licheniformis ATCC
14580]
gi|163119432|ref|YP_078995.2| 16S rRNA-processing protein RimM [Bacillus licheniformis ATCC
14580]
gi|319646017|ref|ZP_08000247.1| 16S rRNA-processing protein rimM [Bacillus sp. BT1B_CT2]
gi|81385584|sp|Q65JP7|RIMM_BACLD RecName: Full=Ribosome maturation factor rimM
gi|52348083|gb|AAU40717.1| RimM [Bacillus licheniformis ATCC 14580]
gi|145902939|gb|AAU23357.2| 16S rRNA processing protein [Bacillus licheniformis ATCC 14580]
gi|317391767|gb|EFV72564.1| 16S rRNA-processing protein rimM [Bacillus sp. BT1B_CT2]
Length = 174
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + Y+ + +++ + +R +K+F +
Sbjct: 8 VGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRLHKQFHLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F ++ + A +L++ + +L EDE++ ++ + F G G+V +
Sbjct: 68 QFKEVETLTEAEKLKNALIKVPEDQLS--QLAEDEYYFHEIIGCDVFSEDGDLIGKVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + + +K LIP+ V E+N+ + I I
Sbjct: 126 LTPGANDVWVVARPGKKDALIPYIDAVVKEINVADKTIKI 165
>gi|327470887|gb|EGF16343.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK330]
Length = 172
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ TI T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGTIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|329947883|ref|ZP_08294815.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 170
str. F0386]
gi|328523507|gb|EGF50605.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 170
str. F0386]
Length = 180
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNRELRILKMYR---KNKRFIA 62
L+ +A IG H L GEV ++ ++P L + ++ L + R R+ A
Sbjct: 2 LLTLAVIGPAHALKGEVRLEIRTDDPEGRLAPGTAVPTEPTQVGPLTVSRLRFDGSRWFA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQD--FKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
TF + +A LR ++L + D D E E+ ++ +L + G+ G+V
Sbjct: 62 TFEQARDRTAAEALRGVRLLVETDDEAPGDTEETEESWYRHELVGLRALSASGEALGEVT 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ A L + + +PF V ++ + + +DP
Sbjct: 122 DLEPGIAQDRLVVTTSGGDEVAVPFVAALVPAIDPEAGTVTLDP 165
>gi|257454504|ref|ZP_05619762.1| 16S rRNA processing protein RimM [Enhydrobacter aerosaccus SK60]
gi|257448066|gb|EEV23051.1| 16S rRNA processing protein RimM [Enhydrobacter aerosaccus SK60]
Length = 185
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 17 HGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKN-KRFIATFSGIDNIHS 72
+G++G +++ S+ + D+ +V+ + ++ +K +R+ K ++ + + + +
Sbjct: 27 YGIHGWLWVFSFTEDREAIFDMQPWVINTAMGQKTLTVKNWRQQGKGYVVQLNEVPDRNI 86
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCGVYNFGAGSIL 131
A + + L+A++ + EL E+E++ +DL + + + G+V ++ GA +I+
Sbjct: 87 AETMFSVSLWAEKNNLS--ELAENEYYWSDLIGLTVISQSENVILGRVKELFETGAHAIM 144
Query: 132 EIKNTMEKT----FLIPFTKFAVLEVNLQENKILID 163
++ T + LIP+ K V EVNL E +++D
Sbjct: 145 VVEPTADSVDGEERLIPWHKQTVGEVNLTEQTLMVD 180
>gi|28210936|ref|NP_781880.1| 16S rRNA-processing protein RimM [Clostridium tetani E88]
gi|28203375|gb|AAO35817.1| 16S rRNA processing protein rimM [Clostridium tetani E88]
Length = 170
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNK 58
+++ + + I THGL GE+ ++ +N ++R+ V + + +++ K N
Sbjct: 7 MEQFLKIGLIINTHGLKGELKVNPQTDN---IDRFKKLKRVYIAGEEKQVEGCKFL--ND 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + GID I A++ R+ + KR+D EL E ++ D+ + D G Y G+
Sbjct: 62 KVVLKIQGIDGIEIANKYRNKYIEVKRED--AVELPEGRYYVADIIGCKVLDEDGNYLGK 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V V + + ++ +K LIP K V++++++ +I+I P+ L
Sbjct: 120 VKEVIHTKNNDVYWVEG--KKELLIPVLKTIVVKIDIENEEIIIKPVKTWL 168
>gi|148241234|ref|YP_001226391.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
gi|209573626|sp|A5GQ79|RIMM_SYNR3 RecName: Full=Ribosome maturation factor rimM
gi|147849544|emb|CAK27038.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
Length = 175
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN-RELRIL--KMYRKN 57
D+ +++ + GL GEV I ++ P +R++ N +++++L +
Sbjct: 3 DEFLVVGQVVAAQGLKGEVRILPASDFPQRFTEPGSRWLRRRGHNEQQVQLLSGRQLPGK 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYW 116
+ F+ F GI++ +A L + D ELE+ EF DL+ + D +
Sbjct: 63 ELFVVRFEGINDRTAAESLVHQEFLVAADDIP--ELEDGEFHVRDLQGLSVRLDTESDPI 120
Query: 117 GQVCGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDP 164
G V +++ G +LEI+ + + L+PF V +V L+E +LI P
Sbjct: 121 GVVVDLHH-GGNDLLEIELKADGRRCLVPFVDAIVPQVELEEGWLLITP 168
>gi|119899189|ref|YP_934402.1| 16S rRNA processing protein [Azoarcus sp. BH72]
gi|166226423|sp|A1K9L0|RIMM_AZOSB RecName: Full=Ribosome maturation factor rimM
gi|119671602|emb|CAL95515.1| conserved hypothetical 16S rRNA processing protein [Azoarcus sp.
BH72]
Length = 168
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRE-----LRILKMYRKN 57
++++ I G+ G + I + ++P + ++ D E ++
Sbjct: 1 MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +A G+ + ++A + + A R E +DE++ DL ++ + + G
Sbjct: 61 KGLVALLEGVPDRNAAEAIEGRYVGAPRDAMPAPE--KDEYYWGDLVGLDVVNETDETLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+V G+ + GA +L++++ E LIPF VL+V+L +I +
Sbjct: 119 RVSGLISTGAHDVLQVEDG-ETERLIPFVAAYVLDVDLAARRIRV 162
>gi|59803034|sp|Q895M3|RIMM_CLOTE RecName: Full=Ribosome maturation factor rimM
Length = 164
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNK 58
+++ + + I THGL GE+ ++ +N ++R+ V + + +++ K N
Sbjct: 1 MEQFLKIGLIINTHGLKGELKVNPQTDN---IDRFKKLKRVYIAGEEKQVEGCKFL--ND 55
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + GID I A++ R+ + KR+D EL E ++ D+ + D G Y G+
Sbjct: 56 KVVLKIQGIDGIEIANKYRNKYIEVKREDA--VELPEGRYYVADIIGCKVLDEDGNYLGK 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V V + + ++ +K LIP K V++++++ +I+I P+ L
Sbjct: 114 VKEVIHTKNNDVYWVEG--KKELLIPVLKTIVVKIDIENEEIIIKPVKTWL 162
>gi|50842920|ref|YP_056147.1| 16S rRNA processing protein RimM [Propionibacterium acnes
KPA171202]
gi|289426523|ref|ZP_06428266.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK187]
gi|289427767|ref|ZP_06429478.1| 16S rRNA processing protein RimM [Propionibacterium acnes J165]
gi|295130977|ref|YP_003581640.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK137]
gi|59798678|sp|Q6A7S6|RIMM_PROAC RecName: Full=Ribosome maturation factor rimM
gi|50840522|gb|AAT83189.1| probable 16S rRNA processing protein RimM [Propionibacterium acnes
KPA171202]
gi|289153251|gb|EFD01969.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK187]
gi|289159031|gb|EFD07224.1| 16S rRNA processing protein RimM [Propionibacterium acnes J165]
gi|291376028|gb|ADD99882.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK137]
gi|313773599|gb|EFS39565.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL074PA1]
gi|313794055|gb|EFS42079.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA1]
gi|313801442|gb|EFS42693.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA2]
gi|313807878|gb|EFS46359.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA2]
gi|313811651|gb|EFS49365.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL083PA1]
gi|313813540|gb|EFS51254.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL025PA1]
gi|313819663|gb|EFS57377.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL046PA2]
gi|313822231|gb|EFS59945.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA1]
gi|313823536|gb|EFS61250.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA2]
gi|313825863|gb|EFS63577.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL063PA1]
gi|313829543|gb|EFS67257.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL063PA2]
gi|313831392|gb|EFS69106.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL007PA1]
gi|313835004|gb|EFS72718.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL056PA1]
gi|313839838|gb|EFS77552.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL086PA1]
gi|314924625|gb|EFS88456.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA3]
gi|314962011|gb|EFT06112.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA2]
gi|314963591|gb|EFT07691.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL082PA1]
gi|314968577|gb|EFT12675.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA1]
gi|314974267|gb|EFT18363.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL053PA1]
gi|314976728|gb|EFT20823.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL045PA1]
gi|314978894|gb|EFT22988.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL072PA2]
gi|314984430|gb|EFT28522.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA1]
gi|314986446|gb|EFT30538.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA2]
gi|314990806|gb|EFT34897.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA3]
gi|315079445|gb|EFT51438.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL053PA2]
gi|315081328|gb|EFT53304.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL078PA1]
gi|315083529|gb|EFT55505.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL027PA2]
gi|315087209|gb|EFT59185.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA3]
gi|315089383|gb|EFT61359.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL072PA1]
gi|315095407|gb|EFT67383.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL038PA1]
gi|315106744|gb|EFT78720.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL030PA1]
gi|315109087|gb|EFT81063.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL030PA2]
gi|327328332|gb|EGE70094.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL096PA2]
gi|327334318|gb|EGE76032.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL097PA1]
gi|327444116|gb|EGE90770.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL043PA2]
gi|327445005|gb|EGE91659.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL043PA1]
gi|327446488|gb|EGE93142.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL013PA2]
gi|327451926|gb|EGE98580.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL092PA1]
gi|328752244|gb|EGF65860.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL020PA1]
gi|328760083|gb|EGF73662.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL099PA1]
gi|332675857|gb|AEE72673.1| ribosome maturation factor RimM [Propionibacterium acnes 266]
Length = 179
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P + V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D+ + DEF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEP-NDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
I + E+ L+PF V V++ +I++ I L++
Sbjct: 136 IDVSGEE-HLVPFVHQLVPTVDVASGRIVVSGIPGLLDS 173
>gi|120610565|ref|YP_970243.1| 16S rRNA-processing protein RimM [Acidovorax citrulli AAC00-1]
gi|209573540|sp|A1TND1|RIMM_ACIAC RecName: Full=Ribosome maturation factor rimM
gi|120589029|gb|ABM32469.1| 16S rRNA processing protein RimM [Acidovorax citrulli AAC00-1]
Length = 191
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRILKMYR 55
V + I G+ G + Y+ +P L R+ L ++ L I +
Sbjct: 17 VEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQARE 76
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +A G+D+ +A LR +++ R F EDE++ DL +E +R+G
Sbjct: 77 HSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTAA--EDEYYWVDLIGLEVVNREGVA 134
Query: 116 WGQVCGVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G + L + + E +IPF V V++ +I++D
Sbjct: 135 LGSVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDRVDIAGRRIVVD 186
>gi|300741683|ref|ZP_07071704.1| 16S rRNA processing protein RimM [Rothia dentocariosa M567]
gi|300380868|gb|EFJ77430.1| 16S rRNA processing protein RimM [Rothia dentocariosa M567]
Length = 212
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 27/173 (15%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSN-----DNRELRILKM 53
VL+A IG HG+ GEV + + + P +DL + S L+++
Sbjct: 3 VLVARIGKPHGIRGEVTVQLFTDIPEERFAPGEVLDLENFTPKSPVATVAPTGRLKVVGH 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKL-YAKRQDFKDEELEEDEFFNTDL--------- 103
K + F + + A ELR +L + +D DE E E N +
Sbjct: 63 RWNKKILVVRFEEVTTRNQAEELRGSRLMFEVPEDEDDEGFYEQELVNLPVYLLMKVPEG 122
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEV 153
E + GK G+V G+ A IL +K E +IPF + V EV
Sbjct: 123 ENPVNNPKAGKPLGKVTGLQTMPAQDILLVKLAAEHGGDEIMIPFVEEIVPEV 175
>gi|282854584|ref|ZP_06263919.1| 16S rRNA processing protein RimM [Propionibacterium acnes J139]
gi|282582166|gb|EFB87548.1| 16S rRNA processing protein RimM [Propionibacterium acnes J139]
gi|314923929|gb|EFS87760.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL001PA1]
gi|314966105|gb|EFT10204.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL082PA2]
gi|314981878|gb|EFT25971.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA3]
gi|315090709|gb|EFT62685.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA4]
gi|315094957|gb|EFT66933.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL060PA1]
gi|315104276|gb|EFT76252.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA2]
gi|327328018|gb|EGE69787.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL103PA1]
Length = 179
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P + V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGSLIVAFGEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D+ + DEF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEP-NDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
I E+ L+PF V V++ +I++ I L++
Sbjct: 136 IDVGGEE-HLVPFVHQLVPTVDVASGQIIVSGIPGLLDS 173
>gi|167032081|ref|YP_001667312.1| 16S rRNA-processing protein RimM [Pseudomonas putida GB-1]
gi|189040848|sp|B0KRI2|RIMM_PSEPG RecName: Full=Ribosome maturation factor rimM
gi|166858569|gb|ABY96976.1| 16S rRNA processing protein RimM [Pseudomonas putida GB-1]
Length = 178
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + N +D R+ L + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+++ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLEDRDEARLLSGYEICIARSLLPN--LAADEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K ++ L+P+T VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTAQCVLAIDLEAGVMRVE 173
>gi|153831521|ref|ZP_01984188.1| 16S rRNA processing protein RimM [Vibrio cholerae 623-39]
gi|148872997|gb|EDL71132.1| 16S rRNA processing protein RimM [Vibrio cholerae 623-39]
Length = 148
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + D + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTME 138
G V + G+ +L +K ++
Sbjct: 127 GVVTDMMETGSHDVLVVKANLK 148
>gi|295396052|ref|ZP_06806236.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
gi|294971140|gb|EFG47031.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
Length = 165
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-----DNRELRILKMYRKNKRFIAT 63
++A +G HG+ GE+ ++ ++P + R+ + D L + + R + T
Sbjct: 4 VVARLGKPHGIRGEMTVEVRTDDPDE--RFTPGATFGTDPDIGTLTLTRARWHRDRLMLT 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + + + A E+R+ + + DE D ++ DL E G G V V
Sbjct: 62 FDEVPDRNRAEEIRNTLITVDVSETDDE----DAWYIDDLVGAEVV-HSGSVIGTVSAVT 116
Query: 124 NFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A ++ ++ + +IPF + V V+L N++ IDP A L+
Sbjct: 117 PGAAQDLIHVELADSGREVMIPFVEEIVPVVDLDNNRVEIDPPAGLLD 164
>gi|302754616|ref|XP_002960732.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
gi|300171671|gb|EFJ38271.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
Length = 604
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQ 118
++ T +D++ AS+ + KR + LEE EF+ DL M+ F + + G
Sbjct: 57 WLLTLKNVDSVEKASKYIGATMLVKRDE--RPALEEGEFYIPDLIGMDVFVQSSMENIGT 114
Query: 119 VCGVYNFGAGSILEIKNTMEKT------FLIPFTKFAVLEVNLQENKILIDP 164
+ + NFGA +L ++ + IPF + V V++++ ++++DP
Sbjct: 115 IADMCNFGASDLLRVQRNPASSVGEGPLIWIPFVEAIVPVVDMEQRRVIVDP 166
>gi|156741645|ref|YP_001431774.1| 16S rRNA processing protein RimM [Roseiflexus castenholzii DSM
13941]
gi|209573591|sp|A7NJT6|RIMM_ROSCS RecName: Full=Ribosome maturation factor rimM
gi|156232973|gb|ABU57756.1| 16S rRNA processing protein RimM [Roseiflexus castenholzii DSM
13941]
Length = 178
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKNKR--F 60
D+++L+ T+ GL+GE+ + S + L +V ++ + R L+ R+ K
Sbjct: 8 DEVLLIGTVVDAFGLHGEIKVRSVTDRVDHLRHHVQTVFVGEERRPFPLQRIREPKTGVL 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T G+ + A LR ++ + D LE DE+F L + + G G V
Sbjct: 68 ILTLGGVTDRTMAEALRGAEVTIRECDAA--PLEADEYFIHQLYGLRVVESSGAEIGIVR 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA ++ ++ L+P V +++ +I++
Sbjct: 126 EVLQTGANDVIVVERHGRSDTLLPMIHDVVESLDVAAGQIVV 167
>gi|55981002|ref|YP_144299.1| 16S rRNA-processing protein RimM [Thermus thermophilus HB8]
gi|67461327|sp|Q5SJH5|RIMM_THET8 RecName: Full=Ribosome maturation factor rimM
gi|145579204|pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
gi|294979412|pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
gi|294979414|pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
gi|55772415|dbj|BAD70856.1| 16S rRNA processing protein RimM [Thermus thermophilus HB8]
Length = 162
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ L+ +Y + I +YR + + +
Sbjct: 2 RLVEIGRFGAPYALKGGL---RFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLA 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L L++YA+ D LEE ++ L + + +G+ G+V + +
Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLPP--LEEGRYYYFALIGLPVYV-EGRQVGEVVDILDA 115
Query: 126 GAGSILEIKNTMEKT-----FLIPFTKFAVLEVNLQENKILIDPIAA 167
GA +L I+ E+ L+P V ++E I +DPI
Sbjct: 116 GAQDVLIIRGVGERLRDRAERLVPLQAPY---VRVEEGSIHVDPIPG 159
>gi|298253303|ref|ZP_06977095.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
gi|297532698|gb|EFH71584.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
Length = 197
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 18 LLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWILL 77
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-------FDRQGKYW 116
F N + A L +LY +D + E E+ ++ DL ++ K
Sbjct: 78 FEESQNRNDAEALNGTELYVHAEDAQ-ELAAENAWYIKDLVGLQARLCEENQLGLTPKII 136
Query: 117 GQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + GA S+L+I+ + KT L+PF + V EV++ + I+P
Sbjct: 137 GKVVDVLD-GAQSLLKIRLDHPVDEEHKTALVPFVEAIVPEVDVANGYLTINP 188
>gi|296111838|ref|YP_003622220.1| 16S rRNA processing protein [Leuconostoc kimchii IMSNU 11154]
gi|295833370|gb|ADG41251.1| 16S rRNA processing protein [Leuconostoc kimchii IMSNU 11154]
Length = 173
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-----FIATF 64
+ TI THG+ GEV I + + D + + + L M ++ R ++ F
Sbjct: 10 VGTIVNTHGIRGEVKIMAITDFAADRFKKGAELQIDTKQGFLPMKVQSSRLHKNMWLVLF 69
Query: 65 SGIDNIHSASELR--DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI NI+ + + D+ +Y + + +EL++DE++ ++ + D G G V +
Sbjct: 70 EGITNINDIEKYKTHDIYVYGEAR----QELDDDEYYYDEIIDSRVVDLDGHEIGVVSDI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K + LIP V V+++++ I ID + L+
Sbjct: 126 MTTPANDVWTVKREGQPDALIPMIDDVVKNVDVEQHLITIDALEGLLD 173
>gi|326318072|ref|YP_004235744.1| 16S rRNA processing protein RimM [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374908|gb|ADX47177.1| 16S rRNA processing protein RimM [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 191
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRILKMYR 55
V + I G+ G + Y+ +P L R+ L ++ L I +
Sbjct: 17 VEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQARE 76
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +A G+D+ +A LR +++ R F EDE++ DL +E +R+G
Sbjct: 77 HSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTAA--EDEYYWVDLIGLEVVNREGVA 134
Query: 116 WGQVCGVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G + L + + E +IPF V +V++ +I++D
Sbjct: 135 LGTVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDKVDVAGRRIVVD 186
>gi|294631646|ref|ZP_06710206.1| 16S rRNA processing protein RimM [Streptomyces sp. e14]
gi|292834979|gb|EFF93328.1| 16S rRNA processing protein RimM [Streptomyces sp. e14]
Length = 202
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 1 MVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPASTGPLTIETGRVHSGRLLLR 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A+ + E E+ E+++ L +++ G G++ +
Sbjct: 61 FEGVGDRTAAEALRNTLLIAEVDPEELPEDED-EYYDHQLIDLDVVTEDGTEVGRITEIS 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 120 HLPSQDLFIVERPDGSEVMIPFVQEIVTEIDLEEQRAVITP 160
>gi|183981814|ref|YP_001850105.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
gi|238689244|sp|B2HJL4|RIMM_MYCMM RecName: Full=Ribosome maturation factor rimM
gi|183175140|gb|ACC40250.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
Length = 174
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR----------ILKMYRKN-KRFIATF 64
HG+ GEV ++ + P +R R R +++ R++ R +
Sbjct: 11 AHGITGEVVVEIRTDEP---DRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGARLLVRL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+G+++ +A LR D + E D +++ LE + G+ G V V +
Sbjct: 68 AGVNDRDTADGLRGSLFVIDSADLPPID-EPDTYYDHQLEGLRVRTTAGQDVGVVAEVLH 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
GAG +L +K + L+PF V V+L + + IDP
Sbjct: 127 TGAGELLAVKCDSGE-VLVPFVGAIVTSVSLDDRILEIDP 165
>gi|227872396|ref|ZP_03990743.1| possible 16S rRNA processing protein [Oribacterium sinus F0268]
gi|227841756|gb|EEJ52039.1| possible 16S rRNA processing protein [Oribacterium sinus F0268]
Length = 174
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 16/164 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN-------RELRILKMYRKNKR 59
+ TI HGL GE+ + P L +L E R +K R
Sbjct: 7 VGTILKPHGLKGEMKVFPTTEEPRRFTQLKELILRRESKGLRDTSFSESRKIKSVRFQGE 66
Query: 60 FIA-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+ GID++ A + R++ L R+ L ++EFF D ME + + G+
Sbjct: 67 FLLLQLEGIDSVEMAEKYRNVSLMIPREQALP--LGDNEFFLGDYIGMEVYIEGKELLGE 124
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V V GA + ++ EK +LIP V E+ +EN+I I
Sbjct: 125 VKEVIETGANLVFSVEGK-EKEYLIPHIPPVVYEI--KENRIAI 165
>gi|157151375|ref|YP_001450597.1| 16S rRNA-processing protein RimM [Streptococcus gordonii str.
Challis substr. CH1]
gi|189040858|sp|A8AXT7|RIMM_STRGC RecName: Full=Ribosome maturation factor rimM
gi|157076169|gb|ABV10852.1| 16S rRNA processing protein RimM [Streptococcus gordonii str.
Challis substr. CH1]
Length = 172
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I++ + RD L +D D LEE EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINAIEKFRDFSLKVAEEDLSD--LEEGEFYYHEIIGLEVYEND-VLLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|91784786|ref|YP_559992.1| 16S rRNA-processing protein [Burkholderia xenovorans LB400]
gi|123062644|sp|Q13VE9|RIMM_BURXL RecName: Full=Ribosome maturation factor rimM
gi|91688740|gb|ABE31940.1| 16S rRNA processing protein RimM [Burkholderia xenovorans LB400]
Length = 244
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 71 VEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSDSV 130
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+V
Sbjct: 131 VAHLGGVTDRDVALALRGSRVYISRSEFP--ALGADEFYWVDLLGLDVVNVAGVSLGKVA 188
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA S+L I+ + LIPF V V+ +I +D
Sbjct: 189 DMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVD 239
>gi|319760316|ref|YP_004124254.1| ribosome maturation factor rimM [Candidatus Blochmannia vafer str.
BVAF]
gi|318039030|gb|ADV33580.1| ribosome maturation factor rimM [Candidatus Blochmannia vafer str.
BVAF]
Length = 189
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSNDNRELRILKMYRK-NKRFIAT 63
V++ IG +G+ G + I S+ + D+ +Y + +L IL+ +R NK +IA
Sbjct: 14 VIIGKIGGAYGVQGWLKIISFTDKIEDIFKYCPWFILLRSQWKLMILENWRVINKHYIAK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
S I + A L L + + +E E++ D+ E + G Y G V +
Sbjct: 74 ISDISSREIAMSLAQCNLIIDSKSLPILK-KEGEYYWKDIIGCEVINIDGDYLGYVINII 132
Query: 124 NFGAGSILEIK-----NTMEKTFLIPFTKFAVLE-VNLQENKILID 163
A +L IK + K+ LIPF + +++ V++ I++D
Sbjct: 133 ETQAHDVLVIKLNSHDDVKIKSCLIPFVQKKIIKYVSIINRTIIVD 178
>gi|283782824|ref|YP_003373578.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
gi|283441158|gb|ADB13624.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
Length = 199
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 20 LLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWILL 79
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-------FDRQGKYW 116
F N + A L +LY +D + E E+ ++ DL ++
Sbjct: 80 FEESQNRNDAEALNGTELYVHAEDAQ-ELAAENAWYIKDLVGLQARLCEENQLGLPACTI 138
Query: 117 GQVCGVYNFGAGSILEIK--NTME---KTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + GA S+L+I+ N ++ KT L+PF + V EV++ + IDP
Sbjct: 139 GKVVDVLD-GAQSLLKIRLNNPIDDDNKTALVPFVEALVPEVDVANGYLTIDP 190
>gi|222152905|ref|YP_002562082.1| 16S rRNA-processing protein RimM [Streptococcus uberis 0140J]
gi|254797765|sp|B9DRW5|RIMM_STRU0 RecName: Full=Ribosome maturation factor rimM
gi|222113718|emb|CAR41678.1| 16S rRNA processing protein [Streptococcus uberis 0140J]
Length = 172
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+R+ K F I F G+++I+ + + L +Q D L+E EF+ + +E ++
Sbjct: 56 HRRQKNFDIIKFKGMNHINDIEKFKGFTLKVSQQHLSD--LDEGEFYYHQIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
Y G + + GA + +K +K L+PF VL V+++ N++ + I GL++
Sbjct: 114 -VYIGTIKEILQPGANDVWVVKRQGKKDLLLPFIPPVVLNVDVEANRVDV-AIMEGLDD 170
>gi|38234108|ref|NP_939875.1| 16S rRNA-processing protein [Corynebacterium diphtheriae NCTC
13129]
gi|59798748|sp|Q6NGI4|RIMM_CORDI RecName: Full=Ribosome maturation factor rimM
gi|38200370|emb|CAE50057.1| Putative 16s rRNA processing protein [Corynebacterium diphtheriae]
Length = 166
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLY----SNDNRELRILKMYRKNKRFIA 62
+++ + +HG+ GEV I+ P I + + L I + R +
Sbjct: 3 LMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + +A LR + +A D + D F++ +LE + + K G+V GV
Sbjct: 63 KFKEIADRTAADSLRGTRFFAAPLDDDVD----DGFYDHELEGLAVIHGEEKI-GEVSGV 117
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ A S+LE+ K LIPF V EV+L +I P
Sbjct: 118 IHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITP 159
>gi|33864216|ref|NP_895776.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9313]
gi|33635800|emb|CAE22125.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9313]
Length = 181
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 12 TIG---TTHGLNGEVYIDSYANNP----IDLNRYVLYSN-DNRELRILKMYRKNKR--FI 61
T+G G+ GE+ I+ ++ P + R++ N + R + +L + R ++
Sbjct: 14 TVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYV 73
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVC 120
F+G++N ++A L KL D L E EF DL +E +G G V
Sbjct: 74 VKFAGVNNRNAAEALVGQKLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAEGPAIGHVI 131
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G +LEI+ + L+PF + V EV L + + + P
Sbjct: 132 DLTTAG-NDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTP 174
>gi|297571154|ref|YP_003696928.1| 16S rRNA processing protein RimM [Arcanobacterium haemolyticum DSM
20595]
gi|296931501|gb|ADH92309.1| 16S rRNA processing protein RimM [Arcanobacterium haemolyticum DSM
20595]
Length = 177
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYR----KNKRFI 61
L+ +A +G HGL GEV ++ ++P L +Y EL + + K F+
Sbjct: 2 LLTVAIVGAPHGLKGEVKLNVRTDSPERRLVVGAMYETQPAELGPVTLASVRNYKGSTFV 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
TF+ + A LR +KL + + +EED +F +L +E D G G+V G
Sbjct: 62 -TFAEYADRTGAEALRGVKLVIETDEDD---VEEDAWFAHELIGLEALDPDGYELGEVAG 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ A L ++ +PF K V EV++ ++ ++ID
Sbjct: 118 LEPGPAHDYLIVREPDGIMTRVPFVKAIVTEVDVDDHCVVID 159
>gi|167767998|ref|ZP_02440051.1| hypothetical protein CLOSS21_02541 [Clostridium sp. SS2/1]
gi|317498407|ref|ZP_07956702.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_63FAA]
gi|167710327|gb|EDS20906.1| hypothetical protein CLOSS21_02541 [Clostridium sp. SS2/1]
gi|291561000|emb|CBL39800.1| 16S rRNA processing protein RimM [butyrate-producing bacterium
SSC/2]
gi|316894301|gb|EFV16488.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_63FAA]
Length = 171
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 15/168 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKM----YR 55
+++ + + I THG+ GEV + + D+ R+ +Y + +E ++L + +
Sbjct: 1 MEEFLQVGAIANTHGIAGEVKVFPMTD---DIKRFKKLKEVYLDTGKERKLLHVVSCKFV 57
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGK 114
KN+ + F NI+ + L+ R + LE+DE+F DL + + G+
Sbjct: 58 KNQP-VLRFKEFSNINEVEMYKRKGLFVTRD--QAVPLEKDEYFIADLIGLSVIREDNGE 114
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G++ V GA + E+K K L+P + + V+LQ+ +I +
Sbjct: 115 VLGELTDVLQTGANDVYEVKMEDGKEVLLPAIRECIKNVDLQKGEITV 162
>gi|46198979|ref|YP_004646.1| 16S rRNA processing protein rimM [Thermus thermophilus HB27]
gi|59798768|sp|Q72JU7|RIMM_THET2 RecName: Full=Ribosome maturation factor rimM
gi|46196603|gb|AAS81019.1| 16S rRNA processing protein rimM [Thermus thermophilus HB27]
Length = 162
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ L+ +Y + I +YR + + +
Sbjct: 2 RLVEIGRFGAPYALKGGL---RFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLA 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L L++YA+ D LEE ++ L + + +G+ G+V + +
Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLPP--LEEGRYYYFALIGLPVYV-EGRQVGEVVDILDA 115
Query: 126 GAGSILEIKNTMEKT-----FLIPFTKFAVLEVNLQENKILIDPIAA 167
GA +L I+ E+ L+P V ++E I +DPI
Sbjct: 116 GAQDVLIIRGVGERLRDRAERLVPLQAPY---VRVEEGGIHVDPIPG 159
>gi|315221647|ref|ZP_07863566.1| 16S rRNA processing protein RimM [Streptococcus anginosus F0211]
gi|315189298|gb|EFU22994.1| 16S rRNA processing protein RimM [Streptococcus anginosus F0211]
Length = 179
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + +L D +E ++ + +RK K F I
Sbjct: 13 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGSILALFDKKEHFVMNVEIASHRKMKNFDII 72
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L +D D L+E EF+ ++ + ++ Q G + +
Sbjct: 73 KFKGMYHINDIEKYRDFTLKVAEEDLSD--LDEGEFYYHEIIGLNVYE-QDILIGTIKEI 129
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL ++L+ N++ ++ I GL++
Sbjct: 130 LQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDLENNRVDVE-IPEGLDD 177
>gi|332670017|ref|YP_004453025.1| 16S rRNA processing protein RimM [Cellulomonas fimi ATCC 484]
gi|332339055|gb|AEE45638.1| 16S rRNA processing protein RimM [Cellulomonas fimi ATCC 484]
Length = 184
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID--LNRYVLYSND--NRELRILKMYRKNKRFIATFS 65
+A IG HGL GEV +D + P + VL + + L +++ + R+ TF+
Sbjct: 5 VARIGRAHGLRGEVALDLRTDAPQERLAVGAVLQTEPAGSGPLTVMRTRVQQGRWYVTFA 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ +A L L + +D + ++D ++ +L + G+ G+V G+ +
Sbjct: 65 EASDRTAAEALTGTTLVVE--VDEDADADDDAWYPHELAGLRAEHVDGRVLGEVVGLEHA 122
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +L ++ L+PF + V V+++ ++++DP
Sbjct: 123 PAHDVLVVREPDGTRTLVPFVRAIVPTVDVRGGRVVLDP 161
>gi|332967675|gb|EGK06786.1| 16S rRNA processing protein RimM [Kingella kingae ATCC 23330]
Length = 169
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
V M I G+ G V + + YA++ +D + L + ++ ++ +
Sbjct: 8 VGMGYIKGAFGVKGWVKVQASTEYADSLLDYPTWRLVKGKDVQIAEVEFGKVAGDELQVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ I++ +A+ +R + R +F E EEDEF+ DL M+ +R+ G+V +
Sbjct: 68 FTHINDRDAAALMRGYTIEVSRDEFA--ETEEDEFYWADLVGMQVVNRENIALGEVAKLM 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L + + LIPF V +VN + I +D
Sbjct: 126 ETGAHDVLIVCGEHGEK-LIPFVSHFVDDVNKETRVITVD 164
>gi|218665436|ref|YP_002427224.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218517649|gb|ACK78235.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 171
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYR-KNKRFIAT 63
+ V++ + +G+ G V + S+ + + Y Y +R +L+ R + + +A
Sbjct: 9 EWVVLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPDRRPWVLEDGRMQGEGVVAK 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ +++ A L ++ R D EL EF+ + L + +R+G G V
Sbjct: 69 LAQVEDREQARALIGQEIAVIRADLP--ELGAGEFYWSTLTGLRVLNREGIVLGTVSAFL 126
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA ++ I + LIP++ A V+L +I++D
Sbjct: 127 ETGANDVMVIDDGKGGELLIPWSAEASAGVDLPAGQIVVD 166
>gi|319938980|ref|ZP_08013344.1| ribosome maturation factor rimM [Streptococcus anginosus 1_2_62CV]
gi|319812030|gb|EFW08296.1| ribosome maturation factor rimM [Streptococcus anginosus 1_2_62CV]
Length = 172
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ + RD L +D D L+E EF+ ++ M ++ Q
Sbjct: 56 HRKMKNFDIVKFKGMYHINDIEKYRDFTLKVAEEDLSD--LDEGEFYYHEIIGMNVYE-Q 112
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + + GA + +K ++ L+P+ VL ++L+ +++ ++ I GL++
Sbjct: 113 DVLIGAIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDLENSRVDVE-IPEGLDD 170
>gi|225868438|ref|YP_002744386.1| 16S rRNA processing protein [Streptococcus equi subsp.
zooepidemicus]
gi|259585652|sp|C0MEI2|RIMM_STRS7 RecName: Full=Ribosome maturation factor rimM
gi|225701714|emb|CAW99063.1| 16S rRNA processing protein [Streptococcus equi subsp.
zooepidemicus]
Length = 172
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 88/170 (51%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S ++ + R L+ + +R ++ +++ +RK+K+F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQFDII 65
Query: 63 TFSGIDNIHSASELRDLKL-YAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ +I++ + + L AK K L E EF+ + +E +++ + GQ+
Sbjct: 66 KFKGMYHINAIEQFKGCSLKIAKEHQGK---LAEGEFYYHQIIGLEVYEKD-QLVGQIKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL V++++ ++ ++ I GL++
Sbjct: 122 ILQPGANDVWVVKRQSKRDLLLPYIPSVVLGVDIEKGRVDVE-IMEGLDD 170
>gi|291533107|emb|CBL06220.1| 16S rRNA processing protein RimM [Megamonas hypermegale ART12/1]
Length = 173
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+K +++ IG HG+ G++ + + P N D++E+ I+ + +
Sbjct: 10 NKKIIIGKIGAAHGVRGDMKVYPLTDFPDRFNTIKKAYVDDKEINIISTRYQGNFVVMKV 69
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+++ + + L R D LE+ E++ D+ ++ ++ G++ +
Sbjct: 70 EGVNSREEVARFTNKLLKINRSDV--PPLEDGEYYAFDIIGLQVINQDDVVLGKITEILK 127
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
G+ + K + LIP K V E+N+++
Sbjct: 128 TGSNDVYITKAKDGRQILIPALKKVVTEINVED 160
>gi|90407076|ref|ZP_01215265.1| 16S rRNA-processing protein [Psychromonas sp. CNPT3]
gi|90311798|gb|EAS39894.1| 16S rRNA-processing protein [Psychromonas sp. CNPT3]
Length = 175
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
+++ G HG+ G + I SY ++ + +Y + Y+ +E+ I + F+A
Sbjct: 8 IVIGKFGAVHGIKGWLKIHSYTDDAESIFQYKPLLMKYNGVMQEVNITDWKAHSGTFVAK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
D + L ++L + D ED+F+ DL + +G + G V +
Sbjct: 68 IKSFDVREESQALVGVELLVNINELPD---LEDDFYWRDLIGCQVETDKGYHLGAVTDMM 124
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTK-FAVLEVNLQENKILID 163
G+ +L +K F LIPF K VL+VN+ I+++
Sbjct: 125 ETGSKDVLVVKANANDAFGQKQRLIPFIKEQVVLDVNITGKLIIVN 170
>gi|297202648|ref|ZP_06920045.1| 16S rRNA processing protein RimM [Streptomyces sviceus ATCC 29083]
gi|197713223|gb|EDY57257.1| 16S rRNA processing protein RimM [Streptomyces sviceus ATCC 29083]
Length = 183
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A+ + E E+ E+++ L +++ G G++ +
Sbjct: 63 FEGVRDRTAAEALRNTLLIAEVDPEELPEEED-EYYDHQLMDLDVVTEDGVEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L E K +I P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVAEIDLAEQKAVITP 162
>gi|163803445|ref|ZP_02197318.1| 16S rRNA-processing protein [Vibrio sp. AND4]
gi|159172746|gb|EDP57594.1| 16S rRNA-processing protein [Vibrio sp. AND4]
Length = 184
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K ++ ++M G T+G+ G + + SY +N + Y + + + E ++ R
Sbjct: 9 MSKQNEKIVMGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYVNQKGKWVEYKVDSWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK + G + A L + ++ EL E+EF+ +L M+ +G
Sbjct: 69 NKGMVCKLEGFEVREDAHLLTNFEIAIDPASLP--ELSEEEFYWRELFGMQVVTTKGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G V + G+ +L IK ++ F L+P+ + V+ +V+ + +I +D
Sbjct: 127 GVVTDMLETGSNDVLVIKANLKDAFGQKERLVPYLEEQVIKKVDREAQRIEVD 179
>gi|291166845|gb|EFE28891.1| 16S rRNA processing protein RimM [Filifactor alocis ATCC 35896]
Length = 167
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 10/163 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIATF 64
+ TI HGL GEV + + + DL+R Y++ +L + + F
Sbjct: 6 IGTIVKPHGLKGEVKVYPHTD---DLSRFEDATYLIVGGTEEKLEVQSTREQKGMIFLKF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I S L +LY + + ELEEDE+ L +E + G V
Sbjct: 63 KDKNTIESIEYLLRKELYVDGDNMR--ELEEDEYMIDTLIGLEVYLEDDTKIGVVTDFLQ 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ A + I + +IPF K V +++++ K+ I PI
Sbjct: 121 YTANDVFVITLESGQKAMIPFLKQFVPKIDMEHQKMRIRPIKG 163
>gi|239917434|ref|YP_002956992.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|281414076|ref|ZP_06245818.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|239838641|gb|ACS30438.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
Length = 200
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSND---NRELRILKMYRKN 57
D LV +A IG HG+ GEV + + ++P R V+ EL + +
Sbjct: 7 DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAELTVTRARWNK 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + F+ + + A LR +L+A + E DE++ DL ++E G+ G
Sbjct: 67 QILVVGFAESLDRNVAETLRGAQLFAVPAAPE----ESDEWYEEDLVDLEVR-IDGERVG 121
Query: 118 QVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + +L + + +E+ L+PF + V E++ + +++ P
Sbjct: 122 VVTALTTGAVQDLLHVAVDGVEEEALVPFVEEIVPEIDPKAGVLVLTP 169
>gi|86151754|ref|ZP_01069968.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86153557|ref|ZP_01071761.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612604|ref|YP_001000408.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157414999|ref|YP_001482255.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81116]
gi|167005350|ref|ZP_02271108.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315124211|ref|YP_004066215.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|166226432|sp|A1VZ67|RIMM_CAMJJ RecName: Full=Ribosome maturation factor rimM
gi|172047104|sp|A8FLE1|RIMM_CAMJ8 RecName: Full=Ribosome maturation factor rimM
gi|85841383|gb|EAQ58631.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843283|gb|EAQ60494.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249538|gb|EAQ72498.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157385963|gb|ABV52278.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747637|gb|ADN90907.1| Ribosome maturation factor rimM [Campylobacter jejuni subsp. jejuni
M1]
gi|315017933|gb|ADT66026.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315931913|gb|EFV10868.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 327]
Length = 179
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNASNS-TVLFE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELINLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVID 120
Query: 122 VYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ + K F IP+ V +++++ +I
Sbjct: 121 ILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQIF 167
>gi|330815921|ref|YP_004359626.1| 16S rRNA processing protein RimM [Burkholderia gladioli BSR3]
gi|327368314|gb|AEA59670.1| 16S rRNA processing protein RimM [Burkholderia gladioli BSR3]
Length = 237
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A +G+ + A LR ++Y +R+DF L+ DEF+ DL ++ + G G+V
Sbjct: 124 VAHLAGLADRDQALALRGYRVYVRREDFP--ALDADEFYWVDLIGLDVVNEAGVELGRVG 181
Query: 121 GVYNFGAGSILEI--------KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G SI+ + + LIPF V V+ +I++D
Sbjct: 182 DMIDNGVHSIMRVDYPASGKDGKPVRGERLIPFVGVYVKTVDQAAKRIVVD 232
>gi|48474357|sp|Q7V4K0|RIMM_PROMM RecName: Full=Ribosome maturation factor rimM
Length = 176
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 12 TIG---TTHGLNGEVYIDSYANNP----IDLNRYVLYSN-DNRELRILKMYRKNKR--FI 61
T+G G+ GE+ I+ ++ P + R++ N + R + +L + R ++
Sbjct: 9 TVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYV 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVC 120
F+G++N ++A L KL D L E EF DL +E +G G V
Sbjct: 69 VKFAGVNNRNAAEALVGQKLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAEGPAIGHVI 126
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G +LEI+ + L+PF + V EV L + + + P
Sbjct: 127 DLTTAG-NDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTP 169
>gi|158320499|ref|YP_001513006.1| 16S rRNA processing protein RimM [Alkaliphilus oremlandii OhILAs]
gi|166979605|sp|A8MHC3|RIMM_ALKOO RecName: Full=Ribosome maturation factor rimM
gi|158140698|gb|ABW19010.1| 16S rRNA processing protein RimM [Alkaliphilus oremlandii OhILAs]
Length = 167
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN--NPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ K++ + I THG+ G++ + + + +V + I + K I
Sbjct: 1 MAKMLRVGKITNTHGIKGDLKVLPLTDYFERFEELEWVYIEGFKDKFYIENIKYKPTLVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + +D L + L ED ++ D+ ++ F + +Y G+V
Sbjct: 61 LSFEGYGDINLVEKFKDRYLLIDES--QRRILPEDTYYIADIIGLDVFTVKDEYIGKVVD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + I+ K +IP K + E++L++ +I IDPI
Sbjct: 119 IIQTGSSEVYVIRMNNLKEIMIPSVKEFMPEISLEKKRITIDPIEG 164
>gi|323705462|ref|ZP_08117037.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535364|gb|EGB25140.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 166
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+D + + I + +G+NGEV + + + DL+ ++ +D R ++ R K
Sbjct: 1 MDNYLSVGKITSAYGVNGEVKVYPLTDHLDRFYDLDYVYIFDDDKRVQYQIESVRFIKNL 60
Query: 61 IAT-FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +++ + A +L++ + D ELEEDE+F DL +M+ + + G +
Sbjct: 61 VLIKFYEVNDRNEAEKLKNKFIKITMDDAV--ELEEDEYFIKDLIDMKVYTEDKRELGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA + +K T E+ LIP K + +V++ K+++
Sbjct: 119 KEVLKTGANDVYVVK-TDERDILIPAIKDVIKDVDINGKKMIV 160
>gi|160938808|ref|ZP_02086159.1| hypothetical protein CLOBOL_03702 [Clostridium bolteae ATCC
BAA-613]
gi|158437771|gb|EDP15531.1| hypothetical protein CLOBOL_03702 [Clostridium bolteae ATCC
BAA-613]
Length = 170
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
++ ++ + I + HG+ GEV + ++ +L +L + E+ +K ++
Sbjct: 1 MENMLRVGVITSAHGIKGEVKVFPTTDDAKRFKELKEVILDTGKEHIPMEIEHVKFFKN- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F G DNI+ + + L R D LE DE+F TDL + QG G
Sbjct: 60 -MVILKFRGYDNINEIEKYKSRDLLITRDQAVD--LEPDEYFITDLIGLTVVSDQGAELG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ V GA + + K ++P +L V+L++ ++
Sbjct: 117 TLKDVLETGANDVYVVAMKDGKELMLPAIGDCILNVDLEQGRM 159
>gi|258508636|ref|YP_003171387.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus GG]
gi|258539813|ref|YP_003174312.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus Lc 705]
gi|257148563|emb|CAR87536.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus GG]
gi|257151489|emb|CAR90461.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus Lc 705]
Length = 172
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ TI THG+ GEV + + P N+ + + L I + + + TF
Sbjct: 7 IGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKGLTMLTFK 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+I+ + KL K LEE ++ D+ + D G+ G+V + +
Sbjct: 67 DYTDINQVLPFKGKKLQVTEAALK--PLEEGSYYYKDIIGLTVIDEHGQTLGKVSEILSP 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
G + I + L+PF K V ++L++ +
Sbjct: 125 GPNDVWVIPRPGKSELLLPFLKSVVQTIDLEQKE 158
>gi|57234665|ref|YP_181309.1| 16S rRNA processing protein RimM [Dehalococcoides ethenogenes 195]
gi|109893011|sp|Q3Z8Z0|RIMM_DEHE1 RecName: Full=Ribosome maturation factor rimM
gi|57225113|gb|AAW40170.1| 16S rRNA processing protein RimM [Dehalococcoides ethenogenes 195]
Length = 167
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 7/172 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNK 58
M + ++ +L+ + G+NG + I+ + P D +L I + +
Sbjct: 1 MTQEEEYILIGKVLGVWGINGGLKIEVLTDFPERFDAGNELLIGR--APYTISQTSWQKA 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I S I I +A EL ++ K +L + +++ L +E D G GQ
Sbjct: 59 QVIVHLSEITGIDAAEELSGAQVEIPAAALK--KLPKGVYYDFQLIGLEVTDLSGNRIGQ 116
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + + I + + K LIP K V E+NLQ+ +++IDPI L+
Sbjct: 117 IKEILHMPSNDIY-VSSYGAKEALIPAVKDVVKEINLQKGQVIIDPIPGLLD 167
>gi|33864685|ref|NP_896244.1| 16S rRNA-processing protein RimM [Synechococcus sp. WH 8102]
gi|46397680|sp|Q7U9V4|RIMM_SYNPX RecName: Full=Ribosome maturation factor rimM
gi|33632208|emb|CAE06664.1| possible 16S rRNA processing protein RimM [Synechococcus sp. WH
8102]
Length = 177
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVL--YSNDNRELRILKMY 54
MV+ + +++ + GL GE+ ++ ++ P +R++ + +E+++ K
Sbjct: 1 MVESEDWLIVGKLVGAQGLQGELRVNPASDFPERFTTPGSRWLRGRKGGEPKEVQLKKGR 60
Query: 55 RKNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDR 111
+ + FI GID+ +A L +L D ELEE EF DL +E
Sbjct: 61 QLPGKSLFILRLEGIDSRDAAEALVGQELLVPASDRP--ELEEGEFHLLDLVGLEARLHA 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G V + + G +LE+K + +T LIPF + V EV+L++
Sbjct: 119 DEPAIGVVTDLIS-GGNDLLELKTSAGRTLLIPFVESIVPEVHLEKG 164
>gi|311113786|ref|YP_003985008.1| 16S rRNA processing protein RimM [Rothia dentocariosa ATCC 17931]
gi|310945280|gb|ADP41574.1| 16S rRNA processing protein RimM [Rothia dentocariosa ATCC 17931]
Length = 212
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSN-----DNRELRILKM 53
VL+A IG HG+ GEV + + + P +DL + S L++
Sbjct: 3 VLVARIGKPHGIRGEVTVQLFTDIPEERFAPGEVLDLENFTPKSPVATVAPTGRLKVAGH 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKL-YAKRQDFKDEELEEDEFFNTDL--------- 103
K + F + + A ELR +L + +D DE E E N +
Sbjct: 63 RWNKKILVVRFEEVTTRNQAEELRGSRLMFEVPEDEDDEGFYEQELVNLPVYLLMKVPEG 122
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEV 153
E + GK G+V G+ A IL +K E +IPF + V EV
Sbjct: 123 ENPVNNPKAGKPLGKVTGLQTMPAQDILLVKLAAEHGGDEIMIPFVEEIVPEV 175
>gi|199597123|ref|ZP_03210555.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229552443|ref|ZP_04441168.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|199591927|gb|EDZ00002.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229314180|gb|EEN80153.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|259649942|dbj|BAI42104.1| 16S rRNA processing protein [Lactobacillus rhamnosus GG]
Length = 198
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ TI THG+ GEV + + P N+ + + L I + + + TF
Sbjct: 33 IGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKGLTMLTFK 92
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+I+ + KL K LEE ++ D+ + D G+ G+V + +
Sbjct: 93 DYTDINQVLPFKGKKLQVTEAALK--PLEEGSYYYKDIIGLTVIDEHGQTLGKVSEILSP 150
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
G + I + L+PF K V ++L++ +
Sbjct: 151 GPNDVWVIPRPGKSELLLPFLKSVVQTIDLEQKE 184
>gi|256851289|ref|ZP_05556678.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260660713|ref|ZP_05861628.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|282933267|ref|ZP_06338654.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|297206157|ref|ZP_06923552.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
gi|256616351|gb|EEU21539.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260548435|gb|EEX24410.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|281302771|gb|EFA94986.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|297149283|gb|EFH29581.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
Length = 170
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRFIATF 64
+A + T+HGL GEV + + P R+ + +D R+L + + ++ TF
Sbjct: 6 VAQVLTSHGLKGEVKVKVITDFP--EQRFCEGVKLFIKDDMRQLTVESGRPFKQFWLVTF 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVY 123
I +I+ A L L +D E+L E ++ + + D + + G+V +
Sbjct: 64 KEIKDINEAESLFGKTLVISEED--QEQLPEGHYYYHQIIGLSVVDNETDELIGKVTDIE 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA I ++ + K F +P+ V VNL + ++ ++ + GL +
Sbjct: 122 APGANDIWQVTPKVGKPFWLPYVPSFVKSVNLDKEEVRVE-LMEGLRD 168
>gi|327460228|gb|EGF06565.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1057]
Length = 172
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G++ +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLAD--LEDGEFYYHEIIGLEVYEND-VLLGRIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|227499932|ref|ZP_03930025.1| possible 16S rRNA processing protein [Anaerococcus tetradius ATCC
35098]
gi|227218041|gb|EEI83314.1| possible 16S rRNA processing protein [Anaerococcus tetradius ATCC
35098]
Length = 162
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A + TTHG+ G V + +Y++N + + + L I + + + F
Sbjct: 3 ITVAEVITTHGIRGNVKVKTYSDNEMRFKKGAKVYIGDELLTIEDSFNQKGMMVLKFDQY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDE---ELEEDEFFNTDLEEMETFD---RQGKYWGQVCG 121
++I+ + LKL K ++E EL+EDEF+ L ++T+ + G+ + G
Sbjct: 63 NDINDS-----LKLVGKDITIEEEDLGELKEDEFYIYKLIGLDTYSNGQKVGRVKDVITG 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
VY + I+ +K L+P K + V+++ KI +D
Sbjct: 118 VY---PNDVYVIETMDKKEILLPALKSVIKNVDIENKKIEVD 156
>gi|332361097|gb|EGJ38901.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1056]
Length = 172
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G++ +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGRIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|332359632|gb|EGJ37449.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK355]
Length = 172
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLRIDIEQGRVDVE-IPEGLDD 170
>gi|149194106|ref|ZP_01871204.1| 16S rRNA processing protein RimM [Caminibacter mediatlanticus TB-2]
gi|149136059|gb|EDM24537.1| 16S rRNA processing protein RimM [Caminibacter mediatlanticus TB-2]
Length = 174
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
K + +A +G ++G+ G I + P +S+D +L I K+ KR + F
Sbjct: 4 KKIPIAKLGKSYGVKGWQKIHLLTDFPEQFKEGKTFSSDKTDLTIEKI--DLKRNLVKFK 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID A ++ + LY ++ ++ +L+++E+F D+E E F+ GK G+V +
Sbjct: 62 GIDTPEDAKKITNRILYTTEEETRENIKLKDNEYFWFDIEGCEVFE-NGKKLGRVKEIER 120
Query: 125 FGAGSIL------EIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
++ IK K FLI F K V EV++ KI
Sbjct: 121 ADVDYLIINTDENLIKEGYPKRFLIDF-KRHVKEVDIDNKKI 161
>gi|327489778|gb|EGF21568.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1058]
Length = 172
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G++ +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYE-DDVLLGRIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|238752939|ref|ZP_04614401.1| Ribosome maturation factor rimM [Yersinia rohdei ATCC 43380]
gi|238708847|gb|EEQ01103.1| Ribosome maturation factor rimM [Yersinia rohdei ATCC 43380]
Length = 186
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + R ++
Sbjct: 15 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQDL 74
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ + ELEED+++ DL + G G++
Sbjct: 75 IIKVKGVDDRDAANLLTNCEIVVDSKQLP--ELEEDDYYWKDLMGCQVVTTTGYELGKII 132
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 133 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVD 181
>gi|324994569|gb|EGC26482.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK678]
gi|327462537|gb|EGF08861.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1]
Length = 172
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G++ +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-LLLGRIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|325690618|gb|EGD32621.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK115]
Length = 172
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G++ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 114 -LLLGRIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|309775672|ref|ZP_07670671.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
gi|308916578|gb|EFP62319.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
Length = 167
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 16 THGLNGEVYIDSYANNP-IDLNR----YVLYSNDNRELRILKMYRKNKRFIATFSGIDNI 70
THGL GEV I + P + ++ ++ +L + + + I F G D+I
Sbjct: 12 THGLRGEVKIKVLTDFPQLRFHKGATVHLQLPTGELDLCVAGVRESKGQLIVKFEGYDDI 71
Query: 71 HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSI 130
+ + L + + +EL+ E + +L++ + G G V + GA ++
Sbjct: 72 NQVEAWKGSMLTIREDEL--QELDAYEAYYYELQDAAVYTMDGTLLGTVTEIIETGANAV 129
Query: 131 LEIKNTMEKTFLIPFTKFAVLE 152
L +K T +K LIPF + V E
Sbjct: 130 LRVK-TADKDILIPFVRAFVKE 150
>gi|332366785|gb|EGJ44526.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1059]
Length = 172
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ RD L + +D D LE+ EF+ ++ +E ++
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIERFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G++ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 114 -VLLGRIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|255066582|ref|ZP_05318437.1| 16S rRNA processing protein RimM [Neisseria sicca ATCC 29256]
gi|255049166|gb|EET44630.1| 16S rRNA processing protein RimM [Neisseria sicca ATCC 29256]
Length = 169
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M + V M I G+ G + I + YA++ +D + L S D + L + K
Sbjct: 1 MTDTRQRVAMGYIKGVFGIKGWLKIAANTEYADSLLDYPEWQL-SKDGKTLNVTLEAGKI 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F GID+ A LR + R++F EEDE++ DL M ++
Sbjct: 60 VSGELQVKFEGIDDRDQAFALRGYTIEIPREEFA--PTEEDEYYWADLVGMTVINKDNIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L I N LIPF + V+ + I D
Sbjct: 118 LGKVTNLMETGANDVLMI-NGEHGQILIPFVSNYIEAVDTEGKTITAD 164
>gi|238765367|ref|ZP_04626291.1| Ribosome maturation factor rimM [Yersinia kristensenii ATCC 33638]
gi|238696409|gb|EEP89202.1| Ribosome maturation factor rimM [Yersinia kristensenii ATCC 33638]
Length = 186
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
+++ +G+T+G+ G + + S N D + + + + L+ ++++ + I
Sbjct: 18 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQDGKWQHVELEDWKRHSQDLIIK 77
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ Q ELEED+++ DL + G G++ +
Sbjct: 78 VKGVDDRDAANLLTNCEIIVDSQQLP--ELEEDDYYWKDLMGCQVVTTAGYELGKIIDMM 135
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 136 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVD 181
>gi|261363724|ref|ZP_05976607.1| 16S rRNA processing protein RimM [Neisseria mucosa ATCC 25996]
gi|288568290|gb|EFC89850.1| 16S rRNA processing protein RimM [Neisseria mucosa ATCC 25996]
Length = 169
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK- 56
M + V M I G+ G + I + YA++ +D + L S D + L + K
Sbjct: 1 MTDTRQRVAMGYIKGVFGIKGWLKIAANTEYADSLLDYPEWQL-SKDGKTLNVTLEAGKI 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F GID+ A LR + R++F EEDE++ DL M ++
Sbjct: 60 VSGELQVKFEGIDDRDQAFALRGYTIEIPREEFA--PTEEDEYYWADLVGMTVVNKDDIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L I N LIPF + V+ + I D
Sbjct: 118 LGKVTNLMETGANDVLMI-NGEHGQILIPFVSNYIETVDTESKTITAD 164
>gi|289548960|ref|YP_003473948.1| 16S rRNA processing protein RimM [Thermocrinis albus DSM 14484]
gi|289182577|gb|ADC89821.1| 16S rRNA processing protein RimM [Thermocrinis albus DSM 14484]
Length = 173
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLYSNDNR---ELRILKMYRKN 57
++D+ V++ + + GL GE+ +D+Y A+ + + V + N + K+ N
Sbjct: 6 EVDQFVIIGRVKDSFGLKGELKVDAYLPASRWKKIQK-VFFKRKNGPYVPFEVEKVRSHN 64
Query: 58 K-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + GID A +L +Y R + +DEF+ +LE ++ G
Sbjct: 65 RGSVVLKLKGIDIKEEAEKLVGAYIYLPRGMVPPK--GKDEFYFFELEGLQVVTTSGHRL 122
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V GV + +LEI IPF K V +VNL+E + +D
Sbjct: 123 GKVTGVIEGRSYFLLEIDRGRG---YIPFVKELVGDVNLEEGIVYVD 166
>gi|332799155|ref|YP_004460654.1| Ribosome maturation factor rimM [Tepidanaerobacter sp. Re1]
gi|332696890|gb|AEE91347.1| Ribosome maturation factor rimM [Tepidanaerobacter sp. Re1]
Length = 171
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILK-MYRKNKRFIA 62
+ + I ++ G+ G+V ++ +NP I ++ + + ++ M+ + +
Sbjct: 7 IAVGKILSSWGVKGQVKVEPLTDNPKRFKILNEVFIDFKSQAVSYKVESVMFLRQYFPVL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A L+ + R+D L ED FF D+ + F+ Y G V V
Sbjct: 67 KFEGINSKEEADTLKGHYININRKD--AVTLSEDRFFICDIIGLHVFNEFETYIGTVIEV 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ + LIP K V +V+L+ ++I P+ L
Sbjct: 125 IQTGANDVYVVETKDKNEILIPAIKQVVKKVDLRNGIMIIRPLEGML 171
>gi|332711278|ref|ZP_08431210.1| 16S rRNA processing protein RimM [Lyngbya majuscula 3L]
gi|332349827|gb|EGJ29435.1| 16S rRNA processing protein RimM [Lyngbya majuscula 3L]
Length = 208
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 42/194 (21%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR----ELRILKMYRKNKRFI 61
+ I + HGL GE+ + ++ P R++ DN EL + ++
Sbjct: 9 IGRIVSPHGLKGELRVYPSSDFPERFEEPGQRWLKPPGDNPPQPVELLWGRFVPGKALYV 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVC 120
G+DN A LR +L D ELEEDE+ DL ++E F++ G+ G V
Sbjct: 69 VQLKGVDNRDQAEALRGYQLLVPTSD--RPELEEDEYHILDLIDLEVFNQLTGEAVGVVV 126
Query: 121 GVYNFGAGSILEI------------------------------KNTMEKTFLIPFTKFAV 150
V G +L++ K T LIPF K
Sbjct: 127 DVIPAG-NDLLKVKLLSSVQPPPTQPETPPPTRTSKKRQAKGKKEPQPATVLIPFVKAIA 185
Query: 151 LEVNLQENKILIDP 164
V+L+ +I I P
Sbjct: 186 PVVDLENGRIEITP 199
>gi|297191792|ref|ZP_06909190.1| 16S rRNA processing protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151068|gb|EDY65599.2| 16S rRNA processing protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 187
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
+++ IG HG+ GEV ++ + P + L + + D L I + R +
Sbjct: 5 LVVGRIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPATAGPLTIETGRVHSGRLLLR 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++A LR+ L A+ + E + E+++ L +++ G G++ +
Sbjct: 65 FEGVKDRNAAEALRNTLLIAEVDPEELPEEPD-EYYDHQLMDLDVVLEDGTEIGRITEIS 123
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 124 HLPSQDLFIVERPDGSEVMIPFVQEIVAEIDLEEQRAVITP 164
>gi|262273653|ref|ZP_06051466.1| 16S rRNA processing protein RimM [Grimontia hollisae CIP 101886]
gi|262222068|gb|EEY73380.1| 16S rRNA processing protein RimM [Grimontia hollisae CIP 101886]
Length = 183
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G ++G+ G + + SY N ++ Y + + +E + R N+ ++
Sbjct: 15 VVVGKLGASYGIRGWLKVFSYTENAENIFSYSPWFIKVRGEWQEFSLEDWKRHNQGYVGK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L + ++ + EL ++EF+ +L ME +G G+V +
Sbjct: 75 LKGLDQREDAQALTNAEIAINAEVLP--ELSDEEFYWRELYGMEVATTKGYNLGKVTDIL 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L ++ + F LIPF V++ ++ +I +D
Sbjct: 133 ETGSNDVLVVQANPKDAFGQKERLIPFLDGQVIKSIDRSAQRIEVD 178
>gi|238026560|ref|YP_002910791.1| 16S rRNA-processing protein RimM [Burkholderia glumae BGR1]
gi|237875754|gb|ACR28087.1| 16S rRNA processing protein RimM [Burkholderia glumae BGR1]
Length = 237
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A +G+ + A LR +++ +R+DF L+ DEF+ DL +E + G G+V
Sbjct: 124 VAHPAGLADRDQALALRGYRVFVRREDFP--ALDTDEFYWVDLIGLEVVNEAGTALGRVG 181
Query: 121 GVYNFGAGSILEI--------KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G SI+ + + LIPF V V+ +I++D
Sbjct: 182 DMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVD 232
>gi|15807006|ref|NP_295733.1| 16S rRNA-processing protein RimM [Deinococcus radiodurans R1]
gi|14423902|sp|Q9RSW1|RIMM_DEIRA RecName: Full=Ribosome maturation factor rimM
gi|6459796|gb|AAF11557.1|AE002038_6 16S rRNA processing protein RimM, putative [Deinococcus radiodurans
R1]
Length = 188
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 16 THGLNGEV--YIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSA 73
HG+ G + Y+ + L R + S LR + N + +G+ + A
Sbjct: 21 PHGVQGGIKLYVLGDPAQVLALKRVYVESRGWLSLRRAEGMPPN--LVLYLAGVSSREGA 78
Query: 74 SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI 133
ELR L++YA + D LEE F+ DL +E + G+ G V V + G +L +
Sbjct: 79 EELRGLQVYATDAELPD--LEEGTFYYHDLRGLEVYGAGGERLGTVSDVMDAGHQDLLVV 136
Query: 134 KNTMEKTFLIPFTKFAVLEVNLQENK 159
+F +P + +EV L K
Sbjct: 137 DYGGGTSF-VPL-QAPYVEVPLAGGK 160
>gi|324991035|gb|EGC22969.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK353]
Length = 172
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G++ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 114 -VLIGRIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|304389812|ref|ZP_07371771.1| 16S rRNA processing protein RimM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326988|gb|EFL94227.1| 16S rRNA processing protein RimM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 192
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE--LRILKMYRKNKRFIAT 63
+ IG G+ GEV + ++P +R+ VL +N N L + + K F+ +
Sbjct: 5 VGIIGRASGVRGEVRVALRTDDP--RSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLY---------------------AKRQDFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNDAETLSGTKLYIETDAPPLCTDPGDTSDTTADPETADYPETTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAMNLAGETLGTISDLLLAPAQDLLEVTTAQGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DP 164
DP
Sbjct: 183 DP 184
>gi|154498109|ref|ZP_02036487.1| hypothetical protein BACCAP_02090 [Bacteroides capillosus ATCC
29799]
gi|150273099|gb|EDN00256.1| hypothetical protein BACCAP_02090 [Bacteroides capillosus ATCC
29799]
Length = 167
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+K + I THG+ GEV I + ++P L ++ + D + +RI +AT
Sbjct: 3 NKFLEAGQIVNTHGVQGEVKIVPWCDSPEFLCQFDVLYIDGQPVRIRSSRVHKGNVLATL 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVY 123
G+ ++++A L+ K+ R EL + F DL +E D + G++ +
Sbjct: 63 EGVSDVNAAMRLKGKKVSIDRTGV---ELPDGRHFLADLMGLEVRDADTDEVLGEIKDIL 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A + +K ++LIP + E N++ I +
Sbjct: 120 TPPAHEVYVVKGGAH-SYLIPAVDEFLKETNVEGGYIRV 157
>gi|325687583|gb|EGD29604.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK72]
Length = 172
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM----YRKNKRF- 60
+ I T GL GE+ + S + + N L+ D +E ++ + +RK K F
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALF--DKKEQFVMDVEIASHRKVKNFD 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G +
Sbjct: 64 IIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGTIK 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 121 EILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|167946318|ref|ZP_02533392.1| 16S rRNA-processing protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 99
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE--EMETFDRQG 113
K K IA G D+ A+ L+D K+ +R LE E++ TDLE +ET D G
Sbjct: 11 KAKGVIAKIQGCDDRDQAAALQDSKIAIRRAQLP--ALEAGEYYWTDLEGLRVETLD--G 66
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFT 146
G+V ++ GA ++ +K E+ +IP+T
Sbjct: 67 VELGRVSYLFETGANDVVVVKGERER--MIPYT 97
>gi|262282893|ref|ZP_06060660.1| ribosome maturation factor rimM [Streptococcus sp. 2_1_36FAA]
gi|262261145|gb|EEY79844.1| ribosome maturation factor rimM [Streptococcus sp. 2_1_36FAA]
Length = 172
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIEKYRDFSLKVAEEDLTD--LEDGEFYYHEIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + + GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 114 -VLLGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDD 170
>gi|253997438|ref|YP_003049502.1| 16S rRNA processing protein RimM [Methylotenera mobilis JLW8]
gi|253984117|gb|ACT48975.1| 16S rRNA processing protein RimM [Methylotenera mobilis JLW8]
Length = 196
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 33/191 (17%)
Query: 4 LDKLVLMATIGTTHGLNG--EVYIDSYANNPI-DLNRYVLYSNDN-RELRILKMYRKNKR 59
+D +V+M I +G+ G +V D+ A + + D + + L D+ RE+ + N
Sbjct: 3 VDNMVVMGRIVAPYGVYGWLKVVPDTEAIDGLFDYDSWWLGKGDDWREMVVETAKIHNDV 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ GID+ +A + ++ R E +E+E++ +DL + + QG +G +
Sbjct: 63 IVVKLVGIDDRDAAFACKGKQIAVPRAQLP--EPDENEYYWSDLVGLRVTNSQGVDFGVI 120
Query: 120 CGVYNFGAGSILEIKNTM---------------------------EKTFLIPFTKFAVLE 152
V+ GA +L +K + LIPF VL
Sbjct: 121 TEVFETGANDVLVVKPDALVKPDSSAKADSKAKSDAVPVEAGKDKPQERLIPFVADVVLT 180
Query: 153 VNLQENKILID 163
V+L+ +L+D
Sbjct: 181 VDLEAKSMLVD 191
>gi|296158304|ref|ZP_06841136.1| 16S rRNA processing protein RimM [Burkholderia sp. Ch1-1]
gi|295891640|gb|EFG71426.1| 16S rRNA processing protein RimM [Burkholderia sp. Ch1-1]
Length = 247
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 74 VEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSDSV 133
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+V
Sbjct: 134 VAHLGGVTDRDVALALRGSRVYISRSEFP--ALGVDEFYWVDLLGLDVVNVAGVNLGKVA 191
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA S+L I+ + LIPF V V+ +I +D
Sbjct: 192 DMVDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKRITVD 242
>gi|295425196|ref|ZP_06817899.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
gi|295064972|gb|EFG55877.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
Length = 185
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRF-IATF 64
+A I TTHGL+GEV + + P ++ L + REL + K R K+F + F
Sbjct: 20 VAKILTTHGLDGEVKVALITDFPEQRFSSGSKLALKDDHERELTV-KSGRPFKQFWLVKF 78
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
+ I +I A LR L ++ +EL E ++ D+ + D Q G++ G++ +
Sbjct: 79 NEITDIDQAERLRGKILVVSEEN--QQELPEGVYYYRDILNCDVIDNQNGEFLGKIVDIQ 136
Query: 124 NFGAGSILEIKNTMEKTFLIPF 145
+ GA + ++ + IP+
Sbjct: 137 SPGANDVWLVQEDSGNEYWIPY 158
>gi|58337564|ref|YP_194149.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus NCFM]
gi|67461233|sp|Q5FJK6|RIMM_LACAC RecName: Full=Ribosome maturation factor rimM
gi|58254881|gb|AAV43118.1| 16S rRNA processing protein [Lactobacillus acidophilus NCFM]
Length = 171
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I TTHGL+GEV ++ + P D R+ L + +R L I K + ++
Sbjct: 6 VARILTTHGLHGEVKVNVITDFPED--RFAEGMQLELKDDIDRVLTIKKSRPFKQFWLLQ 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
F I +I A +LR L +D EL + ++ D+ + D + GK G++ +
Sbjct: 64 FDEITDIDEAEKLRGKILVISEKDRG--ELPDGVYYYKDIFDCGVIDNETGKRLGKITDI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA I + K + IP V ++++ + K+ ++ + GL +
Sbjct: 122 QSPGANDIWLVHEDNGKEYWIPNIADVVKKIDIADKKVYVE-LMEGLRD 169
>gi|91787573|ref|YP_548525.1| 16S rRNA-processing protein RimM [Polaromonas sp. JS666]
gi|91696798|gb|ABE43627.1| 16S rRNA processing protein RimM [Polaromonas sp. JS666]
Length = 213
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A FSG D+ ++A LR +++ R F +DE++ DL + +R+G GQV
Sbjct: 100 VAKFSGQDDRNAAEALRGARIFLPRSSFP--VASKDEYYWVDLIGLNVVNREGVPLGQVR 157
Query: 121 GVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
+ G S+L ++ T ++ +IPF + V++ I +D
Sbjct: 158 DLMTTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCITVD 208
>gi|315657117|ref|ZP_07910001.1| 16S rRNA processing protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492220|gb|EFU81827.1| 16S rRNA processing protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 192
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE--LRILKMYRKNKRFIAT 63
+ IG G+ GEV + ++P +R+ VL +N N L + + K F+ +
Sbjct: 5 VGIIGRASGVRGEVRVALRTDDP--RSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLY---------------------AKRQDFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNGAETLSGTKLYIETDAPPSCTDPGDTPDTTAEPEATDYSENTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAINLAGETLGTISDLLLAPAQDLLEVTTAEREKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DP 164
DP
Sbjct: 183 DP 184
>gi|313763661|gb|EFS35025.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL013PA1]
gi|313816838|gb|EFS54552.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL059PA1]
gi|314914663|gb|EFS78494.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA4]
gi|314919224|gb|EFS83055.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA1]
gi|314920866|gb|EFS84697.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA3]
gi|314930544|gb|EFS94375.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL067PA1]
gi|314954296|gb|EFS98702.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL027PA1]
gi|314957425|gb|EFT01528.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA1]
gi|315099288|gb|EFT71264.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL059PA2]
gi|315100478|gb|EFT72454.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL046PA1]
gi|327455039|gb|EGF01694.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA3]
gi|327457673|gb|EGF04328.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL083PA2]
gi|328755129|gb|EGF68745.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA1]
gi|328758093|gb|EGF71709.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL025PA2]
Length = 179
Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P + V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D+ + DEF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEP-NDDPDDPDEFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
I + E+ L+PF V V++ I++ I L++
Sbjct: 136 IDVSGEE-HLVPFVHQLVPTVDVASGWIVVSGIPGLLDS 173
>gi|209573736|sp|Q12CW5|RIMM_POLSJ RecName: Full=Ribosome maturation factor rimM
Length = 202
Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A FSG D+ ++A LR +++ R F +DE++ DL + +R+G GQV
Sbjct: 89 VAKFSGQDDRNAAEALRGARIFLPRSSFP--VASKDEYYWVDLIGLNVVNREGVPLGQVR 146
Query: 121 GVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
+ G S+L ++ T ++ +IPF + V++ I +D
Sbjct: 147 DLMTTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCITVD 197
>gi|260893267|ref|YP_003239364.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
gi|260865408|gb|ACX52514.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
Length = 169
Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT- 63
+ + I HG G + + + P + + ++ R +K R + +F+
Sbjct: 6 ITVGEIVAPHGYRGALKVLPLTDFPERFLGMKEAMVLLKGRRTTYTVKRARLHGKFVLLE 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G++ + A LR + R++ L ++ DL ME F +G + G++ V
Sbjct: 66 LVGVERMEEAEALRGGLVQVPREEVYP--LPPGHYYIFDLIGMEVFTEEGAFLGKIEAVL 123
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ A + +++ K LIP K V V++ K+ +
Sbjct: 124 STRANDVFSVRSPEGKEILIPALKTVVCSVDVPGRKMTV 162
>gi|299144006|ref|ZP_07037086.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518491|gb|EFI42230.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 169
Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 11/175 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYR 55
M KL + ++ I T G+ GEV I ++ ++R+ V + E + +
Sbjct: 1 MKKLSECTIIGKIINTRGIKGEVKIFPLTSS---VHRFSDLITVFIGKNLEEFEVSNVSY 57
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F IDNI+ +D LY D ELEE+ FF D+ + FD
Sbjct: 58 DDRFVYLKFKNIDNINDILRFKDEFLYIDDAD--RIELEENTFFINDIIGCKVFDLNDNE 115
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + +K+ ++ LIP V ++++ I+IDPI +N
Sbjct: 116 LGEIKDVIENPVNDLYLLKSETGES-LIPAVSQFVKKIDIDNKIIVIDPIEGLIN 169
>gi|51595185|ref|YP_069376.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis IP
32953]
gi|153949535|ref|YP_001402184.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis IP
31758]
gi|186894200|ref|YP_001871312.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis
PB1/+]
gi|59798664|sp|Q66E58|RIMM_YERPS RecName: Full=Ribosome maturation factor rimM
gi|166985979|sp|A7FLQ6|RIMM_YERP3 RecName: Full=Ribosome maturation factor rimM
gi|238691407|sp|B2K5Y9|RIMM_YERPB RecName: Full=Ribosome maturation factor rimM
gi|51588467|emb|CAH20075.1| 16S rRNA processing protein [Yersinia pseudotuberculosis IP 32953]
gi|152961030|gb|ABS48491.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis IP
31758]
gi|186697226|gb|ACC87855.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis
PB1/+]
Length = 182
Score = 42.7 bits (99), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 11 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + +++ LEED+++ DL + G G++
Sbjct: 71 IIKVKGVDDRDAANLLTNCEIFVDSTQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKII 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 129 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 177
>gi|324992791|gb|EGC24711.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK405]
Length = 172
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYE-DDVLLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|227904206|ref|ZP_04022011.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
gi|227868225|gb|EEJ75646.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
Length = 187
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I TTHGL+GEV ++ + P D R+ L + +R L I K + ++
Sbjct: 22 VARILTTHGLHGEVKVNVITDFPED--RFAEGMQLELKDDIDRVLTIKKSRPFKQFWLLQ 79
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
F I +I A +LR L +D EL + ++ D+ + D + GK G++ +
Sbjct: 80 FDEITDIDEAEKLRGKILVISEKDRG--ELPDGVYYYKDIFDCGVIDNETGKRLGKITDI 137
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA I + K + IP V ++++ + K+ ++
Sbjct: 138 QSPGANDIWLVHEDNGKEYWIPNIADVVKKIDIADKKVYVE 178
>gi|323495856|ref|ZP_08100924.1| 16S rRNA-processing protein RimM [Vibrio sinaloensis DSM 21326]
gi|323319072|gb|EGA72015.1| 16S rRNA-processing protein RimM [Vibrio sinaloensis DSM 21326]
Length = 182
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 DDKIVVGKFGATYGIRGWLKVFSYTDNTESIFDYAPWFIKQGEKWVEYKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D A + + ++ EL DEF+ DL M+ +G G V
Sbjct: 71 VVKLEGLDVREEAQLMTNFEISIDPAVLP--ELPSDEFYWRDLIGMQVVTDKGYDLGTVS 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ +L +K ++ F LIPF + V++ ++ +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKTIDRTAQRIEVD 177
>gi|167756886|ref|ZP_02429013.1| hypothetical protein CLORAM_02435 [Clostridium ramosum DSM 1402]
gi|237734596|ref|ZP_04565077.1| ribosome maturation factor rimM [Mollicutes bacterium D7]
gi|167703061|gb|EDS17640.1| hypothetical protein CLORAM_02435 [Clostridium ramosum DSM 1402]
gi|229382416|gb|EEO32507.1| ribosome maturation factor rimM [Coprobacillus sp. D7]
Length = 169
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRK 56
++KL + +GT HGL GE+ I S N+ R+ + Y N + +I+
Sbjct: 1 MEKLKIGKIVGT-HGLKGELKIRS--NSDFADKRFKKGNEIIIRYQNQDLVYKIITSRIH 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ +F +I+ + +Y + D E L+ DE+F TDL M+ +G
Sbjct: 58 KGNYLVSFRDNQDINLVEKYIGSFVYGYKDD---ELLDADEYFYTDLIGMQVVSTEGTKI 114
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V +Y+ IL I + K IP+ + +V++ E KI++ + GL
Sbjct: 115 GPVTSIYDNTRHDILNIDHN-GKNVAIPYVDAFIKDVDV-EKKIIVVMLIKGL 165
>gi|331701478|ref|YP_004398437.1| ribosome maturation factor rimM [Lactobacillus buchneri NRRL
B-30929]
gi|329128821|gb|AEB73374.1| Ribosome maturation factor rimM [Lactobacillus buchneri NRRL
B-30929]
Length = 173
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRI---LKMYRKNKRFIAT 63
+ I T GL GEV + S + P + V N+ ++ + RK+K FI
Sbjct: 6 IGKIVNTQGLKGEVRVISITDFPEKRFKVGNTVFAKLPNKHEQVALTIDGVRKHKGFILL 65
Query: 64 -FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +I+ L+ +L + ++L+ E++ + ++ D G GQV +
Sbjct: 66 HFKNHPSINDVEYLKPSELKIDEESLSSDDLKPGEYYYHQIIGLDVVDPNGNPIGQVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + ++ +K L+P + V+L KI D + GL+
Sbjct: 126 LSPGANDVWLVERDQQKDLLLPKIDSVITNVDLDAGKITAD-VPEGLD 172
>gi|88608189|ref|YP_506024.1| putative 16S rRNA processing protein RimM [Neorickettsia sennetsu
str. Miyayama]
gi|109893024|sp|Q2GES2|RIMM_NEOSM RecName: Full=Ribosome maturation factor rimM
gi|88600358|gb|ABD45826.1| putative 16S rRNA processing protein RimM [Neorickettsia sennetsu
str. Miyayama]
Length = 163
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ +V + +THG+ G V SY + + R F+ T
Sbjct: 1 MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLT 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
S + + A +L ++ L+ E++ DL + +D + + G V +Y
Sbjct: 61 LSRVGSACEAEKLVGFDVFLSESLLP--PLQVGEYYCKDLVGLAVYDLE-ECVGHVSMLY 117
Query: 124 NFGAGS-ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+FGA + +LEI K +IPFT V +++L + ++ +
Sbjct: 118 DFGAAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAV 157
>gi|226313201|ref|YP_002773095.1| 16S rRNA processing protein [Brevibacillus brevis NBRC 100599]
gi|226096149|dbj|BAH44591.1| probable 16S rRNA processing protein [Brevibacillus brevis NBRC
100599]
Length = 175
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 16 THGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IATFSGID 68
THGL GEV + + P R Y+ + + L++ + R +K F I +F G +
Sbjct: 18 THGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLSEPLKLKIASRRPHKNFEIVSFHGFE 77
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+I+ + + +L + ELEEDEF+ L +G+ G++ V GA
Sbjct: 78 HINDIEKYKGGELKIPAEALM--ELEEDEFYIHQLVGCVVVTDEGEELGKIVDVMQPGAN 135
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+ +K L+P+ + EV++ +++
Sbjct: 136 DVWVVKGK-RGEILLPYIDECIKEVDITNKRVV 167
>gi|323351452|ref|ZP_08087108.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
gi|322122676|gb|EFX94387.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
Length = 172
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|198284556|ref|YP_002220877.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198249077|gb|ACH84670.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 160
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYR-KNKRFIATFSG 66
++ + +G+ G V + S+ + + Y Y +R +L+ R + + +A +
Sbjct: 1 MLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPDRRPWVLEDGRMQGEGVVAKLAQ 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ A L ++ R D EL EF+ + L + +R+G G V G
Sbjct: 61 VEDREQARALIGQEIAVIRADLP--ELGAGEFYWSTLTGLRVLNREGIVLGTVSAFLETG 118
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
A ++ I + LIP++ A V+L +I++D
Sbjct: 119 ANDVMVIDDGKGGELLIPWSAEASAGVDLPAGQIVVD 155
>gi|167619158|ref|ZP_02387789.1| 16S rRNA-processing protein [Burkholderia thailandensis Bt4]
Length = 229
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNREL-RILKMYRKN 57
D V + + +GL G V + ++A + + L R+ R+ + +
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLHS 112
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G + +A LR +++ +R DF L DEF+ DL ++ + G G
Sbjct: 113 DAVVAHPAGSVDRDTALALRGFRVFVRRGDF--PALAADEFYWVDLIGLDVVNEAGVALG 170
Query: 118 QVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V + + G SI+ ++ T E+ LIPF V V +I++D
Sbjct: 171 KVADMIDNGVHSIMRVECPATGKDGRPTTGER--LIPFVGVYVKAVEQAAGRIVVD 224
>gi|291522196|emb|CBK80489.1| 16S rRNA processing protein RimM [Coprococcus catus GD/7]
Length = 169
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 74/164 (45%), Gaps = 12/164 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRK 56
++K + + I ++HG+ GE + + D+ R+ + + +EL I +
Sbjct: 1 MEKYLRVGVISSSHGVRGEAKVFPTTD---DVQRFKKLKTCILDTGREYKELHIESVKFF 57
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I F I +I + + L R + +LEE+E+F DL ++ +G+ +
Sbjct: 58 KQMVILKFKEIASIDEVMQYKGKDLLVTRD--QAVKLEENEYFICDLIGLKVVTDEGEDF 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G + V GA + +K K L+P +L+V+L+ ++
Sbjct: 116 GVLTDVIQTGANDVYAVKCPNGKEVLLPVIDECILDVDLERQQV 159
>gi|224116700|ref|XP_002331856.1| predicted protein [Populus trichocarpa]
gi|222875374|gb|EEF12505.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 42.4 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 33/190 (17%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRIL--KMY 54
+ V + I HGL GE+ + + P L + V + RE+ ++ + +
Sbjct: 83 EFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVELVEGRGH 142
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
K +I F GID + A L L + +++ ELEE EF++ DL M ++ G
Sbjct: 143 HGRKSWILKFGGIDTVDRAKLLVGSTLLVR--EYERPELEEGEFYSRDLIGMRVILKETG 200
Query: 114 KYWGQVCGVYNFGAGSILEI-------------------KNTMEKTFLIPFTKFAVLEVN 154
+ G V V++ G +L++ +PF + V +VN
Sbjct: 201 ECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEAIVPDVN 260
Query: 155 LQENKILIDP 164
+ E ++ I P
Sbjct: 261 MNEREMRITP 270
>gi|78183760|ref|YP_376194.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9902]
gi|109893062|sp|Q3B0H7|RIMM_SYNS9 RecName: Full=Ribosome maturation factor rimM
gi|78168054|gb|ABB25151.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9902]
Length = 180
Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLY-SNDNRELRILKMYRK-- 56
L++ + + I GL GE+ ++ ++ P + R+V + RE++ LK R+
Sbjct: 8 LEEWLTVGKIVGVQGLQGELRVNPASDFPERFTVPGPRWVRSKGSPPREMQ-LKTGRQLP 66
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGK 114
F+ +DN +A L D +L E EF DL +E
Sbjct: 67 GKSLFVVRLDSVDNRDAAEALVGSDWMVPADDRP--QLGEGEFHLLDLVGLEARLSPDSD 124
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V + + G +LEIK T LIPF + V EV+L++ +L+ P
Sbjct: 125 PIGTVTDLIS-GGNDLLEIKRTDGSKLLIPFVEAIVPEVHLKDGWLLLTP 173
>gi|309805500|ref|ZP_07699545.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
gi|308165151|gb|EFO67389.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
Length = 173
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GEV + + + P + N Y+ + ++ + + + ++
Sbjct: 6 FVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETVRFHKQAYLVK 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WGQVCGV 122
F I++I A+ + + LY +D D L + ++ L ++ FD + K G + +
Sbjct: 66 FLQINDIDEANRIVNKNLYVSDEDQTD--LPKGSYYIHQLIGLDVFDYETKTKIGILTDI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA I EI + K F IP V +V+L KI
Sbjct: 124 EMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKI 161
>gi|195978232|ref|YP_002123476.1| 16S rRNA-processing protein RimM [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|238689819|sp|B4U396|RIMM_STREM RecName: Full=Ribosome maturation factor rimM
gi|195974937|gb|ACG62463.1| 16S rRNA processing protein RimM [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 172
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S ++ + R L+ + +R ++ +++ +RK+K+F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQFDII 65
Query: 63 TFSGIDNIHSASELR--DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F G+ +I++ + + +LK+ + Q +L E EF+ + +E +++ + G++
Sbjct: 66 KFKGMYHINAIEQFKGYNLKIAKEHQG----KLAEGEFYYHQIIGLEVYEKD-QLVGEIK 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL V+++++++ ++ I GL++
Sbjct: 121 EILQPGANDVWVVKRQSKRDLLLPYIPSVVLCVDIEKHRVDVE-IMEGLDD 170
>gi|57167724|ref|ZP_00366864.1| 16S rRNA processing protein RimM, putative [Campylobacter coli
RM2228]
gi|305433229|ref|ZP_07402385.1| 16S rRNA processing protein RimM [Campylobacter coli JV20]
gi|57020846|gb|EAL57510.1| 16S rRNA processing protein RimM, putative [Campylobacter coli
RM2228]
gi|304443930|gb|EFM36587.1| 16S rRNA processing protein RimM [Campylobacter coli JV20]
Length = 179
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATF 64
+ +A +G T GL G + + + ++ + + +N +L+I N + F
Sbjct: 6 FIQVAKLGKTVGLKGYLKLYNLSDFIQQFKKGASFFTENGKSQLKIKHYNLANSSVL--F 63
Query: 65 SGIDNIHSASELRDLKLY----AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
G +N+ +A +L +L LY A RQ L++DEFF D+ + E FD + + G+V
Sbjct: 64 EGYENVEAAKQLINLILYQSIEATRQTCI---LKKDEFFYFDILKCEVFDDERR-LGKVV 119
Query: 121 GVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKIL 161
+ G + EI++ E KTF IP+ V ++++++ I
Sbjct: 120 DILEVGDSYLFEIQSDQELIDKAYAKTFFIPYIDKYVNKIDIEKYSIF 167
>gi|315655020|ref|ZP_07907924.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 51333]
gi|315490676|gb|EFU80297.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 51333]
Length = 192
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE--LRILKMYRKNKRFIAT 63
+ IG G+ GEV + ++P +R+ VL +N N L + + K F+ +
Sbjct: 5 VGIIGRASGVRGEVRVALRTDDP--RSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLY---------------------AKRQDFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNGAETLSGTKLYIETDAPPLCTDPGDTPDTTAEPEATDYSENTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAINLAGETLGTISDLLLAPAQDLLEVTTAEGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DP 164
DP
Sbjct: 183 DP 184
>gi|294791383|ref|ZP_06756540.1| 16S rRNA processing protein RimM [Scardovia inopinata F0304]
gi|294457854|gb|EFG26208.1| 16S rRNA processing protein RimM [Scardovia inopinata F0304]
Length = 221
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 81/211 (38%), Gaps = 45/211 (21%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D L+ + IG GL GEV I + ++P+ R+ +L N + + + R+
Sbjct: 13 DGLLRVCRIGRAQGLKGEVNIQVFTDSPV--LRFQPGSILLDNQGKSWTVERSRTFKNRW 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQD-----------------------FKDEELEEDE 97
I G+D+ +++ EL+ + LY + +DE+ E+
Sbjct: 71 IIKLEGVDDRNASEELKGMILYVPAPETSTDKAKSSADSDVPPVPPDAAPAQDEQTGEEG 130
Query: 98 FFNTDLEEMETF---DRQGKYWGQVCGVYNFGAGSILEIK-------------NTMEKTF 141
++ +L +E D + GV G + E+ + K
Sbjct: 131 WYPQELIGLEVLAVDDHESALAADYDGVDAHVIGHVSEVDLNNPQPLITVKLVDAGGKEA 190
Query: 142 LIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
LIPF + V V+ E IL+DP L+ T
Sbjct: 191 LIPFVEALVPIVDPDEGYILVDPPGGLLDLT 221
>gi|325695879|gb|EGD37770.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK160]
Length = 172
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ RD L + +D D LE+ EF+ ++ +E ++
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIERFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 114 -ILLGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|187924952|ref|YP_001896594.1| 16S rRNA-processing protein RimM [Burkholderia phytofirmans PsJN]
gi|209573555|sp|B2T606|RIMM_BURPP RecName: Full=Ribosome maturation factor rimM
gi|187716146|gb|ACD17370.1| 16S rRNA processing protein RimM [Burkholderia phytofirmans PsJN]
Length = 248
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 75 VEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERKSAPSLQAKMHSDSV 134
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+V
Sbjct: 135 VAHLGGVTDRDVALALRGSRVYISRSEFP--ALGADEFYWVDLLGLDVVNVAGVNLGKVA 192
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA S+L I+ + LIPF V V+ +I +D
Sbjct: 193 DMIDNGAHSVLRIEYPDTDKSGKPVIGERLIPFVGVFVKTVDQAAKQITVD 243
>gi|298346449|ref|YP_003719136.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 43063]
gi|298236510|gb|ADI67642.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 43063]
Length = 192
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRE--LRILKMYRKNKRFIAT 63
+ IG G+ GEV + ++P +R+ VL +N N L + + K F+ +
Sbjct: 5 VGIIGRASGVRGEVRVALRTDDP--RSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLY---------------------AKRQDFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNDAETLSGTKLYIETDAPPLCADAGDTPDTTADPEAADYPETTENDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAMNLAGETLGTISDLLLAPAQDLLEVTTADGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DP 164
DP
Sbjct: 183 DP 184
>gi|225870640|ref|YP_002746587.1| 16S rRNA processing protein [Streptococcus equi subsp. equi 4047]
gi|254797762|sp|C0M749|RIMM_STRE4 RecName: Full=Ribosome maturation factor rimM
gi|225700044|emb|CAW94083.1| 16S rRNA processing protein [Streptococcus equi subsp. equi 4047]
Length = 172
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 90/169 (53%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S ++ + R L+ + +R ++ +++ +RK+K+F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I++ + + L +++ +L E EF+ + +E +++ + G++ +
Sbjct: 66 KFKGMYHINAIEQFKGYSLKIAKEN--QGKLAEGEFYYHQIIGLEVYEKD-QLVGEIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL V+++++++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRQSKRDLLLPYIPSVVLCVDIEKHRVDVE-IMEGLDD 170
>gi|114567015|ref|YP_754169.1| 16S rRNA processing protein RimM [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122317986|sp|Q0AWV6|RIMM_SYNWW RecName: Full=Ribosome maturation factor rimM
gi|114337950|gb|ABI68798.1| 16S rRNA processing protein RimM [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 172
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRIL---KMYRKNK 58
DKLV + I T+G G + + + P L++ +L N +L + N
Sbjct: 4 DKLVAIGKIAGTYGYAGWLKVIPLTDFPERFYKLDKVIL--NQGGKLGTFLVDGLKAHNN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ FSGID + A ++ L + L E F++ L+ + +D + G+
Sbjct: 62 FYLFKFSGIDTVEVAQGFQNGILQIDESELY--PLPEGYFYHFQLQGLSVYDEEKGLLGE 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + GA + + + LIP K +L V L+E ++ I
Sbjct: 120 LTDIIETGANDVYVVDSPQYGEILIPAIKDVILAVKLEEKRMEI 163
>gi|83719306|ref|YP_442199.1| 16S rRNA-processing protein RimM [Burkholderia thailandensis E264]
gi|257138388|ref|ZP_05586650.1| 16S rRNA-processing protein RimM [Burkholderia thailandensis E264]
gi|109893005|sp|Q2SY00|RIMM_BURTA RecName: Full=Ribosome maturation factor rimM
gi|83653131|gb|ABC37194.1| 16S rRNA processing protein RimM [Burkholderia thailandensis E264]
Length = 229
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP------IDLNRYVLYSNDNREL-RILKMYRKN 57
D V + + +GL G V + ++A + + L R+ R+ + +
Sbjct: 53 DDAVEVGAVVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLHS 112
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A +G + +A LR +++ +R DF L DEF+ DL ++ + G G
Sbjct: 113 DAVVAHPAGSVDRDTALALRGFRVFVRRGDF--PALAADEFYWVDLIGLDVVNEAGVALG 170
Query: 118 QVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V + + G SI+ ++ T E+ LIPF V V +I++D
Sbjct: 171 KVADMIDNGVHSIMRVEYPATGKDGRPTTGER--LIPFVGVYVKAVEQAAGRIVVD 224
>gi|86607822|ref|YP_476584.1| 16S rRNA-processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|109893060|sp|Q2JPG6|RIMM_SYNJB RecName: Full=Ribosome maturation factor rimM
gi|86556364|gb|ABD01321.1| 16S rRNA processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 179
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----K 52
M + +L+ + HGL G + + +++ P R++ D L +
Sbjct: 2 MARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEGQ 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ ++ GI N A +L L+ +E+ DL + + Q
Sbjct: 62 FFPAKGLYLVRLEGIPNRTVAETWVGARLLVPAS--HRLPLQPEEYHYRDLIGLAVY-HQ 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+ GQV G+ G +LEI + + LIPF K V V+L++ + + P
Sbjct: 119 GELLGQVSGILAAGQ-DVLEITTSDHRQVLIPFVKALVPVVDLEKGALHVQP 169
>gi|238854765|ref|ZP_04645095.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|260663997|ref|ZP_05864850.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
gi|282933843|ref|ZP_06339191.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|313472282|ref|ZP_07812774.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|238832555|gb|EEQ24862.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|239529873|gb|EEQ68874.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|260561883|gb|EEX27852.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
gi|281301932|gb|EFA94186.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
Length = 170
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRFIATF 64
+A + T+HGL GEV + + P R+ + +D R+L + + ++ TF
Sbjct: 6 VAQVLTSHGLKGEVKVKVITDFP--EQRFCEGVKLFIKDDMRQLTVESGRPFKQFWLVTF 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVY 123
I +I+ A L L +D ++L E ++ + + D + + G+V +
Sbjct: 64 KEIKDINEAESLFGKTLVISEED--QDQLPEGHYYYHQIIGLSVVDNETDELIGKVTDIE 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA I ++ + K F +P+ V VNL + ++ ++ + GL +
Sbjct: 122 APGANDIWQVTPKVGKPFWLPYVSSFVKSVNLDKGEVRVE-LMEGLRD 168
>gi|262043854|ref|ZP_06016943.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330013032|ref|ZP_08307554.1| 16S rRNA processing protein RimM [Klebsiella sp. MS 92-3]
gi|259038788|gb|EEW39970.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533618|gb|EGF60332.1| 16S rRNA processing protein RimM [Klebsiella sp. MS 92-3]
Length = 183
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D +++ ++ L+ +R N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 178
>gi|329902140|ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
gi|327548863|gb|EGF33491.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
Length = 187
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
LV + + +GLNG V I +++ ++ + L ++ +++ + +
Sbjct: 19 LVQVGYVSGAYGLNGWVRIKPFSSTGDALLNARTWWLDKPALHDVDVMQAKMHSGDVVVQ 78
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+G+ +A L+ + R F L + EF+ DL + + QG+ G V +
Sbjct: 79 LAGVAGRDAAEALKGTSVQIPRSRFP--ALPDGEFYWVDLIGLAVENLQGESIGVVHDMM 136
Query: 124 NFGAGSILEIKNTM------EKTFLIPFTKFAVLEVNLQENKILID 163
+ GA IL ++ + LIPF V V+ Q KI +D
Sbjct: 137 DNGAHPILRVEAAIIPGADKADEILIPFVGQFVRTVDQQAKKITVD 182
>gi|152971458|ref|YP_001336567.1| 16S rRNA-processing protein RimM [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166226446|sp|A6TCL6|RIMM_KLEP7 RecName: Full=Ribosome maturation factor rimM
gi|150956307|gb|ABR78337.1| 16S rRNA-processing protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 182
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D +++ ++ L+ +R N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 177
>gi|238896054|ref|YP_002920790.1| 16S rRNA-processing protein RimM [Klebsiella pneumoniae NTUH-K2044]
gi|238548372|dbj|BAH64723.1| 16S rRNA-processing protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 185
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D +++ ++ L+ +R N+ I
Sbjct: 17 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDIIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 77 LKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 135 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 180
>gi|78211682|ref|YP_380461.1| 16S rRNA-processing protein [Synechococcus sp. CC9605]
gi|109893063|sp|Q3ANC6|RIMM_SYNSC RecName: Full=Ribosome maturation factor rimM
gi|78196141|gb|ABB33906.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9605]
Length = 177
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRI-LKMYRK---NKRFI 61
+ I GL GE+ ++ ++ P + R++ I LK R+ F+
Sbjct: 10 VGKIVAVQGLLGELRVNPASDFPERFTVPGPRWLRSRQGGEPSEIQLKKGRQLPGKSLFV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVC 120
F G+DN +A L ++L D EL E EF DL ++ G G V
Sbjct: 70 VRFEGVDNRSAAETLVGMELLVPADD--RPELAEGEFHLLDLVGLKARLTADGPAIGTVS 127
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
+ + G +LEI + + LIPF + V EV L+
Sbjct: 128 DLIS-GGNDLLEITTSDGRKLLIPFVEAIVPEVKLK 162
>gi|322389630|ref|ZP_08063178.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
903]
gi|321143629|gb|EFX39059.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
903]
Length = 172
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ I S + + + L+ +R ++ + + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGEMRILSVTDFADERFKKGAELALFDEKDRFVQTVTIASHRKHKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + +I++ + + L +D D LE+ EF+ ++ ++ ++ + GQ+ +
Sbjct: 66 KFKDMYHINAIEKFKGFSLKVAEEDLTD--LEDGEFYYHEIIGLDVYEND-QLIGQIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++ N++ +D I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVD-ILEGLDD 170
>gi|269797643|ref|YP_003311543.1| 16S rRNA processing protein RimM [Veillonella parvula DSM 2008]
gi|269094272|gb|ACZ24263.1| 16S rRNA processing protein RimM [Veillonella parvula DSM 2008]
Length = 165
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K + + + I HG+ G++ I + P D +E + R +K+F+
Sbjct: 1 MKHNDFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDGKEYHVASA-RFHKQFV 59
Query: 62 -ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A+F I N ++A + +R+D EL E ++ D+ +E D G G V
Sbjct: 60 LASFKEIPNRNTAELFTKKAIQVRREDLV--ELPEGRYYIFDIIGLEVQDTMGNVLGTVT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V GA + + E L + V ++N++ +++DP
Sbjct: 118 DVLQPGANDVYVVSKDGEPDQLFAAIEEVVKDINVKNKLMIVDP 161
>gi|167837424|ref|ZP_02464307.1| 16S rRNA-processing protein [Burkholderia thailandensis MSMB43]
Length = 233
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 35 LNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELE 94
L + V + + +R+ + +A +G + +A LR ++ +R DF L
Sbjct: 94 LQKGVGRDAERKFVRVTQAKLHGDTVVAHPAGSADRDAALALRSFHVFVRRGDFP--ALA 151
Query: 95 EDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI------KNTMEKTF--LIPFT 146
DEF+ DL ++ + G G+V + + G SI+ + K+ KT LIPF
Sbjct: 152 ADEFYWVDLIGLDVVNEAGVALGKVADLIDNGVHSIMRVEYPATGKDGRPKTGERLIPFV 211
Query: 147 KFAVLEVNLQENKILID 163
V V ++++D
Sbjct: 212 GVYVKAVEQAAGRVVVD 228
>gi|154483573|ref|ZP_02026021.1| hypothetical protein EUBVEN_01277 [Eubacterium ventriosum ATCC
27560]
gi|149735483|gb|EDM51369.1| hypothetical protein EUBVEN_01277 [Eubacterium ventriosum ATCC
27560]
Length = 169
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 7/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR-ELRILKMYRKNKR 59
+++L + I THG+ GEV + +N DL +L + + L + +
Sbjct: 1 MEELFRVGVISNTHGIRGEVKVYPTTDNVRRFDDLKEVILDTGKEQLNLHVTSVKYFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F DNI+ + + L R++ LEE E++ D+ + + K G +
Sbjct: 61 VILKFKEFDNINDIIPYKGMDLLVTRENAI--PLEEGEYYIADIIGSKVITDEDKILGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K K L+P + +L+ ++ ENKI+ I GL
Sbjct: 119 TDVLQTGANDVYVVKTKDGKEVLLPSIEECILDRDI-ENKIVKVHIMKGL 167
>gi|284992389|ref|YP_003410943.1| 16S rRNA processing protein RimM [Geodermatophilus obscurus DSM
43160]
gi|284065634|gb|ADB76572.1| 16S rRNA processing protein RimM [Geodermatophilus obscurus DSM
43160]
Length = 177
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSN--DNRELRILKMYRKNKRFIA 62
V++ IG HG+ GEV ++ ++P DL VL + D L I + +
Sbjct: 12 VVVGRIGRPHGVRGEVTVEVRTDDP-DLRFAPGAVLRTEPADRGPLTIAACRWHREVLLL 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ + +A ELR+ +L+ D E + D +++ L + G G V V
Sbjct: 71 AIDGVKSREAAEELRNTELHVPVADLPALE-DPDVYYDHQLVGLTARLPDGTELGTVSAV 129
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAV 150
+ GA +L ++ L+PF V
Sbjct: 130 RHEGA-DLLVVRRVEGGELLVPFVTAIV 156
>gi|260889503|ref|ZP_05900766.1| 16S rRNA processing protein RimM [Leptotrichia hofstadii F0254]
gi|260860914|gb|EEX75414.1| 16S rRNA processing protein RimM [Leptotrichia hofstadii F0254]
Length = 107
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GIDNI +A EL K+ +R E E+EF+ DL +E F K G+V V
Sbjct: 3 FEGIDNIDAAKELNGYKVKIRRDLLP--ERNEEEFYVKDLFGIEVFSENEKI-GEVTDVM 59
Query: 124 NFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKI 160
A +IL I++ + +K +IP V +++ N+I
Sbjct: 60 ETAAHNILIIEDIVTKKEIMIPLIDEFVTKIDFSNNRI 97
>gi|124024290|ref|YP_001018597.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9303]
gi|123964576|gb|ABM79332.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9303]
Length = 181
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 12 TIG---TTHGLNGEVYIDSYANNP----IDLNRYVLYSN-DNRELRILKMYRKNKR--FI 61
T+G G+ GE+ I+ ++ P + R++ N + R + +L + R ++
Sbjct: 14 TVGKLVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYV 73
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVC 120
F+G++N ++A L L D L E EF DL +E +G G V
Sbjct: 74 VKFAGVNNRNAAEALVGQNLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAEGPAIGHVI 131
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G +LEI+ + L+PF + V EV L + + + P
Sbjct: 132 DLTTAG-NDLLEIELLAGRRVLVPFVEAIVPEVQLNQGWLRLTP 174
>gi|239944618|ref|ZP_04696555.1| 16S rRNA-processing protein [Streptomyces roseosporus NRRL 15998]
gi|239991082|ref|ZP_04711746.1| 16S rRNA-processing protein [Streptomyces roseosporus NRRL 11379]
gi|291448082|ref|ZP_06587472.1| 16S rRNA processing protein [Streptomyces roseosporus NRRL 15998]
gi|291351029|gb|EFE77933.1| 16S rRNA processing protein [Streptomyces roseosporus NRRL 15998]
Length = 203
Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A + E E+ EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRSAAEALRNTLLIADVDPDELPEEED-EFYDHQLIDLDVVLADGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVIAP 162
>gi|296330817|ref|ZP_06873292.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674335|ref|YP_003866007.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151822|gb|EFG92696.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412579|gb|ADM37698.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 174
Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + + + Y+ N + + + +R +K+F +
Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGSNEPVEVTVNTHRLHKQFHLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++ +L++ + +D EL E EF+ ++ E F G+ G+V +
Sbjct: 68 QFKERQSLNEVEKLKNAIIKVPEEDLG--ELNEGEFYFHEIIGCEVFTEDGELIGKVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + I +K LIP+ + V +++ E KI I+
Sbjct: 126 LTPGANDVWVIGRKGKKDALIPYIESVVKYIDVSEKKIEIE 166
>gi|288818298|ref|YP_003432646.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
gi|288787698|dbj|BAI69445.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
gi|308751895|gb|ADO45378.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
Length = 170
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVL--YSNDNRELRILKMYRKNKRF 60
+ V++ + T+GL GE+ ++SY + L L D +I + +
Sbjct: 5 SQFVVIGKVVDTYGLKGEIKMESYLEKKHWKKLKEVFLKKRGGDFVPFKIEGVKLHGRYV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I FSG + + A + K++ + +DE++ LE ++ + GK+ G+V
Sbjct: 65 IVKFSGCEGVDQAKNYKSAKVFLPLHQLPKRK--KDEYYYFQLEGLQVYTESGKFLGKVT 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V +LE+ + IPF V EV+++ KI +
Sbjct: 123 KVLEGKPYYLLEMDHGRG---YIPFIGQMVKEVDIEGKKIKVS 162
>gi|257878613|ref|ZP_05658266.1| ribosome maturation factor rimM [Enterococcus faecium 1,230,933]
gi|257883127|ref|ZP_05662780.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,502]
gi|257891874|ref|ZP_05671527.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,410]
gi|257894444|ref|ZP_05674097.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,408]
gi|260559326|ref|ZP_05831508.1| ribosome maturation factor rimM [Enterococcus faecium C68]
gi|261208002|ref|ZP_05922680.1| ribosome maturation factor rimM [Enterococcus faecium TC 6]
gi|289566902|ref|ZP_06447309.1| 16S rRNA processing protein RimM [Enterococcus faecium D344SRF]
gi|293563834|ref|ZP_06678267.1| 16S rRNA processing protein RimM [Enterococcus faecium E1162]
gi|293567277|ref|ZP_06678631.1| 16S rRNA processing protein RimM [Enterococcus faecium E1071]
gi|294615593|ref|ZP_06695449.1| 16S rRNA processing protein RimM [Enterococcus faecium E1636]
gi|294619817|ref|ZP_06699207.1| 16S rRNA processing protein RimM [Enterococcus faecium E1679]
gi|294622897|ref|ZP_06701810.1| 16S rRNA processing protein RimM [Enterococcus faecium U0317]
gi|314938073|ref|ZP_07845381.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a04]
gi|314943595|ref|ZP_07850352.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133C]
gi|314949232|ref|ZP_07852581.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0082]
gi|314952618|ref|ZP_07855610.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133A]
gi|314992466|ref|ZP_07857888.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133B]
gi|314997371|ref|ZP_07862327.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a01]
gi|257812841|gb|EEV41599.1| ribosome maturation factor rimM [Enterococcus faecium 1,230,933]
gi|257818785|gb|EEV46113.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,502]
gi|257828234|gb|EEV54860.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,410]
gi|257830823|gb|EEV57430.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,408]
gi|260074686|gb|EEW63006.1| ribosome maturation factor rimM [Enterococcus faecium C68]
gi|260077760|gb|EEW65473.1| ribosome maturation factor rimM [Enterococcus faecium TC 6]
gi|289161308|gb|EFD09201.1| 16S rRNA processing protein RimM [Enterococcus faecium D344SRF]
gi|291590026|gb|EFF21820.1| 16S rRNA processing protein RimM [Enterococcus faecium E1071]
gi|291591536|gb|EFF23189.1| 16S rRNA processing protein RimM [Enterococcus faecium E1636]
gi|291593950|gb|EFF25434.1| 16S rRNA processing protein RimM [Enterococcus faecium E1679]
gi|291597669|gb|EFF28822.1| 16S rRNA processing protein RimM [Enterococcus faecium U0317]
gi|291604204|gb|EFF33705.1| 16S rRNA processing protein RimM [Enterococcus faecium E1162]
gi|313588558|gb|EFR67403.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a01]
gi|313593008|gb|EFR71853.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133B]
gi|313595286|gb|EFR74131.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133A]
gi|313597713|gb|EFR76558.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133C]
gi|313642562|gb|EFS07142.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a04]
gi|313644373|gb|EFS08953.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0082]
Length = 173
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L+ + + + +K +RK+K F +
Sbjct: 7 VGKIVNTQGIKGEVRVISTTDFPEE--RYKKGTVLTLFQDGKAPVELTVKSHRKHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + RD L + + D L E+EF+ ++ + + G G+V
Sbjct: 65 LSFEGHPSINDVEKYRDGILKVSKDNSVD--LAENEFYYHEIIGLHVLE-DGTELGKVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ + L+P+ V EV+L+ + ++ I GL
Sbjct: 122 ILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVE-IPEGL 168
>gi|123441195|ref|YP_001005182.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160292|ref|YP_004296869.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|166226488|sp|A1JK24|RIMM_YERE8 RecName: Full=Ribosome maturation factor rimM
gi|122088156|emb|CAL10944.1| 16S rRNA processing protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604477|emb|CBY25975.1| 16S rRNA processing protein RimM [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664522|gb|ADZ41166.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862668|emb|CBX72816.1| ribosome maturation factor rimM [Yersinia enterocolitica W22703]
Length = 182
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S N + Y + + + + R ++ I
Sbjct: 14 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ + ELEED+++ DL + G G++ +
Sbjct: 74 VKGVDDRDAANLLTNCEIVVDSKQLP--ELEEDDYYWKDLMGCQVVTTAGYELGKIIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 132 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVD 177
>gi|83644607|ref|YP_433042.1| 16S rRNA processing protein RimM [Hahella chejuensis KCTC 2396]
gi|109893019|sp|Q2SL57|RIMM_HAHCH RecName: Full=Ribosome maturation factor rimM
gi|83632650|gb|ABC28617.1| 16S rRNA processing protein RimM [Hahella chejuensis KCTC 2396]
Length = 173
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYR-KNKRFIA 62
V + I +G+ G + + S+ + P ++ RY ++ + NR L+ + + K +
Sbjct: 5 VCIGKIVGVYGVKGWLKVRSFTSPPENMLRYANWELVREDGNRSSAKLRSGKPQGKGIVI 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+D+ + A ++ + + LEE E++ LE + F +G G+V +
Sbjct: 65 ALAGVDDRNLAKSYVGCQIEIESSELP--ALEEGEYYWRQLEGLTVFTSEGVNIGRVSHL 122
Query: 123 YNFGAGSILEIKNTME----KTFLIPFTKFAVLE-VNLQENKILID 163
GA +L + + E + LIP+ +E ++L +N +++D
Sbjct: 123 IETGANDVLVVIGSAESIDKRERLIPYLPGQFIENIDLDKNLMVVD 168
>gi|255321345|ref|ZP_05362505.1| 16S rRNA processing protein RimM [Campylobacter showae RM3277]
gi|255301498|gb|EET80755.1| 16S rRNA processing protein RimM [Campylobacter showae RM3277]
Length = 167
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
+G T GL G V + + + P + + + + + ++K Y I+ F G ++I S
Sbjct: 2 LGKTVGLKGFVKLHNKGDFPNQFKKNATFCDKDGKELVVKSYNHANDTIS-FYGFEDIDS 60
Query: 73 ASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A L + +Y +++ K+ +L++ EFF D+ E ++ + G+V + GA +
Sbjct: 61 AKTLTNKTIYTTKEETRKNCKLKKGEFFYFDVIGCEIYENNQR-LGEVEDIDEVGANHLF 119
Query: 132 EIKN-------TMEKTFLIPFTKFAVLEVNLQENKI 160
+K +EK+F IP+ + +V+++ KI
Sbjct: 120 LVKTDENLISKGLEKSFYIPYIDVYIEKVDVENKKI 155
>gi|171769889|sp|A2CCX2|RIMM_PROM3 RecName: Full=Ribosome maturation factor rimM
Length = 176
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 12 TIG---TTHGLNGEVYIDSYANNP----IDLNRYVLYSN-DNRELRILKMYRKNKR--FI 61
T+G G+ GE+ I+ ++ P + R++ N + R + +L + R ++
Sbjct: 9 TVGKLVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQLPGRSLYV 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVC 120
F+G++N ++A L L D L E EF DL +E +G G V
Sbjct: 69 VKFAGVNNRNAAEALVGQNLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAEGPAIGHVI 126
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G +LEI+ + L+PF + V EV L + + + P
Sbjct: 127 DLTTAG-NDLLEIELLAGRRVLVPFVEAIVPEVQLNQGWLRLTP 169
>gi|332976616|gb|EGK13457.1| 16S rRNA processing protein RimM [Desmospora sp. 8437]
Length = 173
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKR--- 59
L+ + I THG+ GEV + S + P + +L E R + + R
Sbjct: 6 LLTVGRIAGTHGIRGEVRVHSRTDYPELRFAPGTQLLLVHPSLEEGRPITVVRARPHKDF 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ F NI+ A + L R++ E EED F+ ++ +G+ G +
Sbjct: 66 WLVQFEEWTNINQAEPFKGGLLRVSREEAV--EPEEDAFYLHEIVGARVVTTEGEPVGVI 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA + I+ LIPF V +V+ +++I
Sbjct: 124 TEILQPGANDVWVIRKDGGGEVLIPFIDDVVRKVDPSAKQVII 166
>gi|257884158|ref|ZP_05663811.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,501]
gi|257819996|gb|EEV47144.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,501]
Length = 173
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L+ + + + +K +RK+K F +
Sbjct: 7 VGKIVNTQGIKGEVRVISTTDFPEE--RYKKGTVLTLFQDGKAPVELTVKSHRKHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + RD L + + D L E+EF+ ++ + + G G+V
Sbjct: 65 LSFEGHPSINDVEKYRDGILKVSKDNSVD--LAENEFYYHEIIGLRVLE-DGTELGKVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ + L+P+ V EV+L+ + ++ I GL
Sbjct: 122 ILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVE-IPEGL 168
>gi|238791384|ref|ZP_04635023.1| Ribosome maturation factor rimM [Yersinia intermedia ATCC 29909]
gi|238729517|gb|EEQ21032.1| Ribosome maturation factor rimM [Yersinia intermedia ATCC 29909]
Length = 186
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 15 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 74
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 75 IIKVKGVDDRDAANLLTNCEIIVDSKQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKII 132
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 133 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 181
>gi|206577100|ref|YP_002237053.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae 342]
gi|288934016|ref|YP_003438075.1| 16S rRNA processing protein RimM [Klebsiella variicola At-22]
gi|290510924|ref|ZP_06550293.1| 16S rRNA processing protein RimM [Klebsiella sp. 1_1_55]
gi|238058952|sp|B5XVK4|RIMM_KLEP3 RecName: Full=Ribosome maturation factor rimM
gi|206566158|gb|ACI07934.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae 342]
gi|288888745|gb|ADC57063.1| 16S rRNA processing protein RimM [Klebsiella variicola At-22]
gi|289775917|gb|EFD83916.1| 16S rRNA processing protein RimM [Klebsiella sp. 1_1_55]
Length = 182
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D +++ ++ L+ +R N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELEGWRHHNQDIIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 177
>gi|309804277|ref|ZP_07698354.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|312871868|ref|ZP_07731952.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|312872444|ref|ZP_07732513.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|315653409|ref|ZP_07906331.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
gi|308163680|gb|EFO65950.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|311092026|gb|EFQ50401.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|311092590|gb|EFQ50950.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|315489334|gb|EFU78974.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
Length = 173
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GEV + + + P + N Y+ + ++ + + ++
Sbjct: 6 FVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQAYLVK 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WGQVCGV 122
F I++I A+ + + LY +D D L + ++ L ++ FD + K G + +
Sbjct: 66 FLQINDIDEANRIVNKNLYVSDEDQTD--LPKGSYYIHQLIGLDVFDYETKTKIGILTDI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA I EI + K F IP V +V+L KI
Sbjct: 124 EMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKI 161
>gi|123967026|ref|YP_001012107.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9515]
gi|166226464|sp|A2BYY9|RIMM_PROM5 RecName: Full=Ribosome maturation factor rimM
gi|123201392|gb|ABM73000.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9515]
Length = 179
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDN-RELRILKMYR 55
M+ D+ +++ I + G+NG++ + S ++ R++ ++ ++L+++ ++
Sbjct: 1 MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQ 60
Query: 56 K--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---D 110
K + F+ TF I N + A +L+ KL K + +L ++EF T+L ++ +
Sbjct: 61 KPGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEI--PKLNKNEFHLTELMNLKVKILEN 118
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ K G+V + N ++L IK T +K L+PF K + E++++ NK LI GL
Sbjct: 119 NKLKIIGKVVNLEN-EKNNLLVIKLLTNDKEVLVPFVKEIIPEIDIK-NKFLIITPPPGL 176
>gi|121604368|ref|YP_981697.1| 16S rRNA-processing protein RimM [Polaromonas naphthalenivorans
CJ2]
gi|209573587|sp|A1VM98|RIMM_POLNA RecName: Full=Ribosome maturation factor rimM
gi|120593337|gb|ABM36776.1| 16S rRNA processing protein RimM [Polaromonas naphthalenivorans
CJ2]
Length = 202
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A FSG+D+ +A LR +++ R F DE++ DL + +R+G G V
Sbjct: 89 VAKFSGLDDRDAAEALRGARIFLSRSSFP--AASADEYYWVDLIGLNVLNREGVALGCVR 146
Query: 121 GVYNFGAGSIL--EIKNTMEKTF------LIPFTKFAVLEVNLQENKILID 163
+ G S+L E +T E +IPF V +V++ I +D
Sbjct: 147 DLMATGPHSVLCVEYASTQEDGTSATAERMIPFVAAYVDKVDIAGKCITVD 197
>gi|328473830|gb|EGF44663.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 220]
Length = 140
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNR-ELRILKMYRKNKRF-IA 62
+ I THGL GE+ + + + P + Y+ N + E I++ +RK+K F +
Sbjct: 4 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G IH +++ L K D LEE+EF+ ++ G+ G++ +
Sbjct: 64 MFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEELGEITEI 121
Query: 123 YNFGAGSILEIKNTMEK 139
GA + +K + +K
Sbjct: 122 LTPGANDVWVVKGSDKK 138
>gi|266625654|ref|ZP_06118589.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
gi|288862441|gb|EFC94739.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
Length = 170
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRI----LKMYRKN 57
+++L+ + I +THG+ GEV + ++ + V+ +L++ +K ++
Sbjct: 1 MEQLLRVGVISSTHGVKGEVKVFPTTDDAARFKKLKQVILDTGKEQLKLEIEGVKFFKN- 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I F G D I + + + R + +L DE F DL ++ G+ +G
Sbjct: 60 -MVILKFKGYDTIEDIEKYKGKDILVTRD--QAVKLGPDENFIVDLIGLKVVTEDGEPFG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ V GA + E+K K L P + + V+L+ + +
Sbjct: 117 TLTDVIKTGANDVYEVKTAEGKEVLFPAIRECIRNVDLEAGVVTV 161
>gi|94969901|ref|YP_591949.1| 16S rRNA processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
gi|123079472|sp|Q1IMM5|RIMM_ACIBL RecName: Full=Ribosome maturation factor rimM
gi|94551951|gb|ABF41875.1| 16S rRNA processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
Length = 209
Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLY----SNDNRELRILKMYRKNKR 59
D + +A I T G GEV+ + + + P + R+ LY + REL + +
Sbjct: 10 DDFITIARIQKTQGRVGEVFSELFTDFPELFEQRHHLYVLPEKGERRELELEDHWFHKGG 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG---KYW 116
+ F GI+ I A +L ++ RQD +LEE + +DL E F+ G +
Sbjct: 70 VVLKFQGIETIDDAEKLLRSEVQIPRQDRA--QLEEGATYVSDLVGCELFEIHGSEARKV 127
Query: 117 GQVCGV-YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G V V ++ G +L +K E LIP+ + + + + +I M
Sbjct: 128 GVVADVDFSAGEAPLLVVKGDRE--HLIPYVESFLKSTDFKAKRI------------EMV 173
Query: 176 NPQ----YDCPLDSAGKK 189
PQ D PL A K+
Sbjct: 174 LPQGMLELDAPLSKAEKE 191
>gi|253682584|ref|ZP_04863381.1| 16S rRNA processing protein RimM [Clostridium botulinum D str.
1873]
gi|253562296|gb|EES91748.1| 16S rRNA processing protein RimM [Clostridium botulinum D str.
1873]
Length = 162
Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRF 60
+++ + + I THGL GE+ + + D+ R+ D + I + +
Sbjct: 1 MEQFLAVGKIINTHGLKGEIKLLPSTD---DVERFKQLKKAYIDGEVIEIEGCKFQPGKV 57
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I +D+I A L++ + R++ +L E ++ D+ +D K G++
Sbjct: 58 ILKIKDVDSIEQAQRLKNKYIKVSRENA--AKLPEGCYYEADIVGCIVYDENDKELGKID 115
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ G+ + IK E LIP K ++ +++ KI+I P+
Sbjct: 116 EIIRTGSNDVYWIKGKNE--LLIPAIKSVIVTIDVNSKKIVIKPL 158
>gi|293556485|ref|ZP_06675059.1| 16S rRNA processing protein RimM [Enterococcus faecium E1039]
gi|291601364|gb|EFF31642.1| 16S rRNA processing protein RimM [Enterococcus faecium E1039]
Length = 173
Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRI-LKMYRKNKRF-I 61
+ I T G+ GEV + S + P + RY L+ + + + +K +RK+K F +
Sbjct: 7 VGKIVNTQGIKGEVRVISTTDFPEE--RYKKGTVLTLFQDGKAPVELTVKSHRKHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + RD L + + D L E+EF+ ++ + + G G+V
Sbjct: 65 LSFEGHPSINDVEKYRDGILKVSKDNSVD--LAENEFYYHEIIGLHVLE-DGTELGKVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + ++ + L+P+ V EV+L+ + ++ I GL
Sbjct: 122 ILSPGANDVWVVQRPEKADILLPYIASVVKEVDLEAGVVRVE-IPEGL 168
>gi|108808841|ref|YP_652757.1| 16S rRNA-processing protein RimM [Yersinia pestis Antiqua]
gi|108810969|ref|YP_646736.1| 16S rRNA-processing protein RimM [Yersinia pestis Nepal516]
gi|153997660|ref|ZP_02022760.1| 16S rRNA processing protein [Yersinia pestis CA88-4125]
gi|161484858|ref|NP_668228.2| 16S rRNA-processing protein RimM [Yersinia pestis KIM 10]
gi|161511454|ref|NP_991788.2| 16S rRNA-processing protein RimM [Yersinia pestis biovar Microtus
str. 91001]
gi|162421041|ref|YP_001605453.1| 16S rRNA-processing protein RimM [Yersinia pestis Angola]
gi|165925672|ref|ZP_02221504.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936610|ref|ZP_02225177.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009999|ref|ZP_02230897.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213093|ref|ZP_02239128.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399078|ref|ZP_02304602.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421657|ref|ZP_02313410.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423837|ref|ZP_02315590.1| 16S rRNA processing protein RimM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025578|ref|YP_001722083.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis
YPIII]
gi|218930315|ref|YP_002348190.1| 16S rRNA-processing protein RimM [Yersinia pestis CO92]
gi|229838912|ref|ZP_04459071.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229896395|ref|ZP_04511563.1| 16S rRNA processing protein [Yersinia pestis Pestoides A]
gi|229899478|ref|ZP_04514620.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229901184|ref|ZP_04516307.1| 16S rRNA processing protein [Yersinia pestis Nepal516]
gi|270489367|ref|ZP_06206441.1| 16S rRNA processing protein RimM [Yersinia pestis KIM D27]
gi|294505008|ref|YP_003569070.1| 16S rRNA-processing protein [Yersinia pestis Z176003]
gi|21362863|sp|Q8ZBU8|RIMM_YERPE RecName: Full=Ribosome maturation factor rimM
gi|122382874|sp|Q1C410|RIMM_YERPA RecName: Full=Ribosome maturation factor rimM
gi|122385120|sp|Q1CLJ4|RIMM_YERPN RecName: Full=Ribosome maturation factor rimM
gi|238687264|sp|A9R0U4|RIMM_YERPG RecName: Full=Ribosome maturation factor rimM
gi|238688419|sp|B1JJ90|RIMM_YERPY RecName: Full=Ribosome maturation factor rimM
gi|108774617|gb|ABG17136.1| 16S rRNA processing protein RimM [Yersinia pestis Nepal516]
gi|108780754|gb|ABG14812.1| 16S rRNA processing protein RimM [Yersinia pestis Antiqua]
gi|115348926|emb|CAL21885.1| 16S rRNA processing protein [Yersinia pestis CO92]
gi|149289297|gb|EDM39377.1| 16S rRNA processing protein [Yersinia pestis CA88-4125]
gi|162353856|gb|ABX87804.1| 16S rRNA processing protein RimM [Yersinia pestis Angola]
gi|165915259|gb|EDR33869.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922284|gb|EDR39461.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990906|gb|EDR43207.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205880|gb|EDR50360.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960576|gb|EDR56597.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051582|gb|EDR62990.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167058007|gb|EDR67753.1| 16S rRNA processing protein RimM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752112|gb|ACA69630.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis
YPIII]
gi|229681909|gb|EEO78002.1| 16S rRNA processing protein [Yersinia pestis Nepal516]
gi|229687475|gb|EEO79549.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695278|gb|EEO85325.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700469|gb|EEO88500.1| 16S rRNA processing protein [Yersinia pestis Pestoides A]
gi|262366997|gb|ACY63554.1| 16S rRNA-processing protein [Yersinia pestis D182038]
gi|270337871|gb|EFA48648.1| 16S rRNA processing protein RimM [Yersinia pestis KIM D27]
gi|294355467|gb|ADE65808.1| 16S rRNA-processing protein [Yersinia pestis Z176003]
gi|320016487|gb|ADW00059.1| 16S rRNA processing protein [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 182
Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 11 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 71 IIKVKGVDDREAANLLTNCEIIVDSTQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKII 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 129 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 177
>gi|238785843|ref|ZP_04629812.1| Ribosome maturation factor rimM [Yersinia bercovieri ATCC 43970]
gi|238713256|gb|EEQ05299.1| Ribosome maturation factor rimM [Yersinia bercovieri ATCC 43970]
Length = 186
Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 15 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 74
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 75 IIKVKGVDDRDAANLLTNCEIIVDSKQLP--TLEEDDYYWKDLMGCQVVTTTGYELGKII 132
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 133 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKSVDLTAQRVEVD 181
>gi|322516398|ref|ZP_08069323.1| 16S rRNA processing protein RimM [Streptococcus vestibularis ATCC
49124]
gi|322125131|gb|EFX96524.1| 16S rRNA processing protein RimM [Streptococcus vestibularis ATCC
49124]
Length = 172
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + VL D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNHIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + +L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCRLKIAEENLTD--LDDGEFYYHEIIGLDVYEGDS-LIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|116621688|ref|YP_823844.1| 16S rRNA processing protein RimM [Candidatus Solibacter usitatus
Ellin6076]
gi|122254547|sp|Q024L7|RIMM_SOLUE RecName: Full=Ribosome maturation factor rimM
gi|116224850|gb|ABJ83559.1| 16S rRNA processing protein RimM [Candidatus Solibacter usitatus
Ellin6076]
Length = 176
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLY------SNDNRELRILKMYRKNK 58
V +A +G T G GEV ++ P DL L+ + + RE+ + + +
Sbjct: 9 VTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVE--EAWYHLQ 66
Query: 59 RFIATFSGIDNIHSASEL--RDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
+ F G+D I A L ++++ A ++ L+E E+F +DL E DRQ G+
Sbjct: 67 TLVLKFRGVDTISEAESLYGAEVRIPASQRI----SLDEGEYFESDLIGCEVVDRQSGQS 122
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + G +L + + LIPF + +E+N +I ++
Sbjct: 123 LGKVSAWDDGGGSGLLVVGD-----LLIPFARAICVEINPAAKRITVE 165
>gi|268596210|ref|ZP_06130377.1| ribosome maturation factor rimM [Neisseria gonorrhoeae FA19]
gi|268681472|ref|ZP_06148334.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
gi|268549998|gb|EEZ45017.1| ribosome maturation factor rimM [Neisseria gonorrhoeae FA19]
gi|268621756|gb|EEZ54156.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
Length = 169
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L + D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA IL I + LIPF + V+ I D
Sbjct: 125 METGANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|119946971|ref|YP_944651.1| 16S rRNA processing protein RimM [Psychromonas ingrahamii 37]
gi|166226470|sp|A1SZY7|RIMM_PSYIN RecName: Full=Ribosome maturation factor rimM
gi|119865575|gb|ABM05052.1| 16S rRNA processing protein RimM [Psychromonas ingrahamii 37]
Length = 175
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDN-RELRILKMYRK 56
M K + +++ G HG+ G + + SY ++P + Y ++ S +E+ I R
Sbjct: 1 MSKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F+A G D A L L+L + LEED F+ DL + G
Sbjct: 61 SNGFVAKIVGFDVREEAQALVGLELLVDSDKLPN--LEED-FYWRDLIGCQVKTDNGYDL 117
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL 151
G V + G+ +L +K F LIPF V+
Sbjct: 118 GVVTEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVI 157
>gi|239928687|ref|ZP_04685640.1| 16S rRNA-processing protein [Streptomyces ghanaensis ATCC 14672]
gi|291437011|ref|ZP_06576401.1| 16S rRNA processing protein [Streptomyces ghanaensis ATCC 14672]
gi|291339906|gb|EFE66862.1| 16S rRNA processing protein [Streptomyces ghanaensis ATCC 14672]
Length = 188
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRE---LRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATEPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++A LR+ L A+ + E E+ E+++ L +++ G+ G++ +
Sbjct: 63 FEGVRDRNAAEALRNTLLIAEVDPEERPEDED-EYYDHQLIDLDVVTADGEQVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
+ + ++ +PF + V E++L E + +I P +++ +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVFVPFVEEIVAEIDLVEQRAVITPPPGLIDDRAVRDEAAD 178
>gi|293397633|ref|ZP_06641839.1| 16S rRNA processing protein RimM [Neisseria gonorrhoeae F62]
gi|291611579|gb|EFF40648.1| 16S rRNA processing protein RimM [Neisseria gonorrhoeae F62]
Length = 169
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L + D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA IL I + LIPF + V+ I D
Sbjct: 125 METGANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|254447247|ref|ZP_05060714.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
gi|198263386|gb|EDY87664.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
Length = 170
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--------ILKMYRKNKR 59
+++ +G HG+ G + + SY + +L Y + + R + + K
Sbjct: 6 LIVGKLGGPHGVRGWIKVLSYTDPRENLFEYTPWLIERPSDRGAQWQGYDVESARPQGKG 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ ID+ +A +L ++ + ELEE E++ +L +E QG+ G+V
Sbjct: 66 WVVKLKDIDDRDAALQLMHSRVSVREDQLP--ELEEGEYYWRELIGLEVVTSQGQVLGKV 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPF 145
+ GA +L ++ E+ LIP+
Sbjct: 124 SQLLETGANDVLVVRGERER--LIPY 147
>gi|21957630|gb|AAM84479.1|AE013692_8 hypothetical protein y0895 [Yersinia pestis KIM 10]
gi|45435105|gb|AAS60665.1| 16S rRNA processing protein [Yersinia pestis biovar Microtus str.
91001]
Length = 186
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 15 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 74
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 75 IIKVKGVDDREAANLLTNCEIIVDSTQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKII 132
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 133 DMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 181
>gi|150016062|ref|YP_001308316.1| 16S rRNA-processing protein RimM [Clostridium beijerinckii NCIMB
8052]
gi|189040129|sp|A6LSN0|RIMM_CLOB8 RecName: Full=Ribosome maturation factor rimM
gi|149902527|gb|ABR33360.1| 16S rRNA processing protein RimM [Clostridium beijerinckii NCIMB
8052]
Length = 165
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
L + I THG+ GEV + + R E +IL + + R I G
Sbjct: 4 LFKIGQIINTHGIKGEVKVYPLTEDVNKFKRLETVLVGGEEKKILGVKFQKDRVILKIEG 63
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+++ A + + R++ + EL D ++ +DL+E +D K G++ V +
Sbjct: 64 IDSMNDAETYKQKYIEIPREN--EPELPPDTYYVSDLKECTIYDTNEKEIGRIFDVISTP 121
Query: 127 AGSILEIKNTMEKTFLIPFTKFAV 150
+ IK K LIP + V
Sbjct: 122 NNDVYWIKEP--KELLIPVLRDIV 143
>gi|254495799|ref|ZP_05108711.1| truncated 16S rRNA processing protein RimM [Legionella drancourtii
LLAP12]
gi|254354956|gb|EET13579.1| truncated 16S rRNA processing protein RimM [Legionella drancourtii
LLAP12]
Length = 115
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+NK IA G + + L ++++ +++ EEL+ E++ L M+ + +G+
Sbjct: 6 QNKSIIAQVEGYPERETVARLTNIEIAVQKEQL--EELQSGEYYWHQLIGMDVINAKGES 63
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT--KFAVLEVNLQENKILID 163
+G+V + G+ +L ++ EK LIP+ KF +L+VN + I +D
Sbjct: 64 FGRVIEIMPTGSNDVLIVQG--EKRHLIPYLPGKF-ILDVNSSQQLITVD 110
>gi|33241213|ref|NP_876155.1| 16S rRNA-processing protein [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|48474803|sp|Q7V9R4|RIMM_PROMA RecName: Full=Ribosome maturation factor rimM
gi|33238743|gb|AAQ00808.1| RimM protein, required for 16S rRNA processing [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 176
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIG---TTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRK-- 56
K ++ TIG GL+G+V I+ ++ P +R++ Y N+ + L R+
Sbjct: 3 KKIIWLTIGKIVAPQGLSGKVRINPSSDFPERFIKSGDRWLQYDNEEPQKIQLNSGRQIP 62
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGK 114
++ F GID+ A L KL L EF DL ++ +
Sbjct: 63 GKSIYVVEFQGIDDREKAKALVGKKLLIDSSH--RPTLAPGEFHLLDLLGLKVRLKNDHR 120
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V + + G +LE++ K L+PF K V E+ LQE +++ P
Sbjct: 121 EIGEVTNLTSAG-NDLLEVRLLSGKKVLVPFVKEIVPEIKLQEGWLMVCP 169
>gi|332701667|ref|ZP_08421755.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
gi|332551816|gb|EGJ48860.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 9/180 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRI-LKMYRKNK-RF 60
+ VL+ + +HGL GE + YA++P+ ++ L + R R ++ +R ++ R
Sbjct: 5 EWVLIGEVAKSHGLKGEFSVKYYADSPLLLDEVGHVWLSTAGGRPKRFQIRAWRGHQDRV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +GID A + R ++ K + EE + DL+ + G G +
Sbjct: 65 LLWLTGIDGRDQADDWRGAEVLLKESELPAP--EEGGVYLHDLQGLTVLLEDGSRLGTIT 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
+ + I + L P V ++L+ + I P GL + +K + D
Sbjct: 123 D-FILEPQELWSITTDKGEEVLFPAVPELVPNIDLEAGTVTIAP-PPGLLDLYLKKEEAD 180
>gi|237744032|ref|ZP_04574513.1| ribosome maturation factor rimM [Fusobacterium sp. 7_1]
gi|229431261|gb|EEO41473.1| ribosome maturation factor rimM [Fusobacterium sp. 7_1]
Length = 171
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRE--LRILKM-YRKNKRFI 61
+++ + +H L GEV + S +N L N+ +L D+++ L + K+ + ++I
Sbjct: 1 MIVAGKVLGSHNLKGEVKVISDLDNIEVLVGNKVILELADSQQKLLTVKKIEHLVANKWI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVC 120
+F I N E+R+ + +R +EEDE+ +D+ + +D +G +Y G++
Sbjct: 61 FSFEEIKNKQDTIEIRNANIKVRRDIVG---IEEDEYLVSDMIGFKVYDVKGDEYLGEIT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
+ + A I I++ +T +IP + ++ + K+L+D I MK P+
Sbjct: 118 EIMDTTAHDIYVIESEEFET-MIPDVDVFIKNIDFENRKMLVDTIKG------MKEPK 168
>gi|182435680|ref|YP_001823399.1| 16S rRNA-processing protein RimM [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776305|ref|ZP_08235570.1| Ribosome maturation factor rimM [Streptomyces cf. griseus
XylebKG-1]
gi|238689008|sp|B1VYW1|RIMM_STRGG RecName: Full=Ribosome maturation factor rimM
gi|178464196|dbj|BAG18716.1| putative 16S rRNA processing protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326656638|gb|EGE41484.1| Ribosome maturation factor rimM [Streptomyces cf. griseus
XylebKG-1]
Length = 198
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P + L + + + L + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTVEAGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR+ L A+ + E E+ EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRTGAEALRNTLLIAEVDPDELPEEED-EFYDHQLIDLDVVLADGTGIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + ++ +IPF + V E++L+E + +I P
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVITP 162
>gi|310641517|ref|YP_003946275.1| ribosome maturation factor rimm [Paenibacillus polymyxa SC2]
gi|309246467|gb|ADO56034.1| Ribosome maturation factor rimM [Paenibacillus polymyxa SC2]
Length = 171
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 25/168 (14%)
Query: 10 MATIGTTHGLNGEVYI--------DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF- 60
+ I THG+ GE+ I D +A + ++ D + + + + RF
Sbjct: 7 VGKIVNTHGIRGELKILTTTDFLEDRFAKG----SELLIVPADGK--APIPVTVETARFQ 60
Query: 61 ----IATFSGIDNIHSASELRD--LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ F NI+ + + LK+ A+R ELEE+EF+ ++ ME G
Sbjct: 61 KNMVVVKFKEYHNINDVEKYKGTLLKVSAERLG----ELEENEFYFHEVVGMEVVTEDGT 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V + GA + ++ K L+P+ + +L+VN++E ++ +
Sbjct: 117 KLGEVKEILTPGANDVWVVQMPKGKELLLPYIEDVILDVNVREKRVTV 164
>gi|85860172|ref|YP_462374.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
gi|109893058|sp|Q2LVU6|RIMM_SYNAS RecName: Full=Ribosome maturation factor rimM
gi|85723263|gb|ABC78206.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
Length = 166
Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRFIATF 64
+ I +HGL G + SY N DL+ V + R ++ K+ F
Sbjct: 6 IGEIVKSHGLKGRMKAKSYVENGEDLSSVHEAMIVKGKEEPRGYKVRKIVLHKTYFFLEL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
ID + SA L + D L DE++ DL ++ +G++ G++ ++
Sbjct: 66 ETIDTVESADSLVGSTVLIPEDD--RAALSGDEYYWRDLMGLQVVTEEGRFLGRIESIFP 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ + + + L+P +L+++L + ++++
Sbjct: 124 TGSNDVY-VCAGGSREILLPAISDVILKIDLDKKEMVV 160
>gi|283768299|ref|ZP_06341211.1| 16S rRNA processing protein RimM [Bulleidia extructa W1219]
gi|283104691|gb|EFC06063.1| 16S rRNA processing protein RimM [Bulleidia extructa W1219]
Length = 165
Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP-IDLNR-YVLYSNDNRELRILKMYRKNKRFIAT 63
K + + I THG+ GE+ + S + P I + LY +D +EL I + + ++
Sbjct: 2 KKIQVGWIQNTHGIKGELKVRSETDFPNIHFKKGKKLYLDDQKELLISSSRLQKEMYLLQ 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV- 122
F G +I+ + + LY + D L++ E++ L + +G G + V
Sbjct: 62 FVGYQDINLVQDWKGKGLYIDQND--QVHLKKGEYYRHQLIGLSVISEKGSLVGTILAVE 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + L ++ T +K L PF + V+ +E K+ ++
Sbjct: 120 ETLGAQNNLRVE-TEKKEVLYPFIPSFIDRVDQEERKVYVN 159
>gi|224373529|ref|YP_002607901.1| 16S rRNA processing protein RimM [Nautilia profundicola AmH]
gi|223589785|gb|ACM93521.1| 16S rRNA processing protein RimM [Nautilia profundicola AmH]
Length = 173
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A IG ++G+ G I + P + + +D +L I K+ KR + F GI
Sbjct: 4 IPIAKIGKSYGIKGWQKIHLLTDFPEQFKKDKTFPSDKIDLTIEKI--DLKRGLVKFKGI 61
Query: 68 DNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
D A +L + LY+ + K++ +L+E+E+F D+ + ++ G+ G+V +
Sbjct: 62 DTPEDAKKLTNRMLYSTEEQTKEDIKLKENEYFWFDIIGCDVYE-DGELLGRVKEIERAN 120
Query: 127 AGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
L I E K FLI F K V +V+++ KI D
Sbjct: 121 EADYLVINTNPELIEKKYPKRFLIDF-KRHVKDVDVENKKIEAD 163
>gi|90580368|ref|ZP_01236175.1| 16S rRNA-processing protein [Vibrio angustum S14]
gi|90438670|gb|EAS63854.1| 16S rRNA-processing protein [Vibrio angustum S14]
Length = 177
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G T+G+ G + + SY + Y + + +E+ + R + +A
Sbjct: 9 IIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEIHVESWKRHGQGLVAK 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + ++ + L ++EF+ +L M F +G G+V +
Sbjct: 69 LEGMDIREDAQVFTNAEVAVLAEQLP--ALSDEEFYWRELFGMSVFTTEGYDLGKVTDIL 126
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF 145
G+ +L +K ++ F LIPF
Sbjct: 127 ETGSNDVLVVKANLKDAFGQKERLIPF 153
>gi|145600322|ref|YP_001164398.1| 16S rRNA-processing protein RimM [Yersinia pestis Pestoides F]
gi|166226489|sp|A4TQ63|RIMM_YERPP RecName: Full=Ribosome maturation factor rimM
gi|145212018|gb|ABP41425.1| 16S rRNA processing protein RimM [Yersinia pestis Pestoides F]
Length = 182
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRF 60
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 11 DQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 71 IIKVKGVDDREAANLLTNCEIIVDSTQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKII 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 129 DMMETGSNDVMLVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 177
>gi|148926677|ref|ZP_01810358.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845196|gb|EDK22291.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 151
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A +G T GL G V + + ++ + + + +E+ +K Y + + F
Sbjct: 6 FVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNTSNSTVL-FE 64
Query: 66 GIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 65 NYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKVVD 120
Query: 122 VYNFGAGSILEIKN 135
+ GA + EI++
Sbjct: 121 ILETGASYLFEIQS 134
>gi|89075048|ref|ZP_01161489.1| 16S rRNA-processing protein [Photobacterium sp. SKA34]
gi|89049135|gb|EAR54700.1| 16S rRNA-processing protein [Photobacterium sp. SKA34]
Length = 177
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G T+G+ G + + SY + Y + + +E+ + R + +A
Sbjct: 9 IIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEIHVESWKRHGQGLVAK 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + ++ + L ++EF+ +L M F +G G+V +
Sbjct: 69 LEGMDIREDAQVFTNAEVAVLAEQLP--ALSDEEFYWRELFGMSVFTTEGYDLGKVTDIL 126
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF 145
G+ +L +K ++ F LIPF
Sbjct: 127 ETGSNDVLVVKANLKDAFGQKERLIPF 153
>gi|254493078|ref|ZP_05106249.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 1291]
gi|260441169|ref|ZP_05794985.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae DGI2]
gi|268598336|ref|ZP_06132503.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|268600689|ref|ZP_06134856.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|268683640|ref|ZP_06150502.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|291044498|ref|ZP_06570207.1| ribosome maturation factor rimM [Neisseria gonorrhoeae DGI2]
gi|226512118|gb|EEH61463.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 1291]
gi|268582467|gb|EEZ47143.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|268584820|gb|EEZ49496.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|268623924|gb|EEZ56324.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|291011392|gb|EFE03388.1| ribosome maturation factor rimM [Neisseria gonorrhoeae DGI2]
Length = 169
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L + D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|327474393|gb|EGF19799.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK408]
Length = 172
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + N L+ ++ + +++ +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + RD L + +D D LE+ EF+ ++ ++ ++ G + +
Sbjct: 66 KFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLKVYEND-ILLGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDD 170
>gi|194466486|ref|ZP_03072473.1| 16S rRNA processing protein RimM [Lactobacillus reuteri 100-23]
gi|227544360|ref|ZP_03974409.1| 16S rRNA processing protein RimM [Lactobacillus reuteri CF48-3A]
gi|300909779|ref|ZP_07127240.1| 16S rRNA processing protein RimM [Lactobacillus reuteri SD2112]
gi|194453522|gb|EDX42419.1| 16S rRNA processing protein RimM [Lactobacillus reuteri 100-23]
gi|227185623|gb|EEI65694.1| 16S rRNA processing protein RimM [Lactobacillus reuteri CF48-3A]
gi|300893644|gb|EFK87003.1| 16S rRNA processing protein RimM [Lactobacillus reuteri SD2112]
Length = 168
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKM--YRKNKRFI-A 62
+ I THG+ GEV + A R+ LY + E L + R++K F+
Sbjct: 6 VGKIVNTHGVRGEVRV--LATTDFIDERFAKGNTLYLQQSGEPLPLTIESTRQHKGFVLV 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G DNI+ + RD +L D + L++ +++ + ++ G++ G++ +
Sbjct: 64 KFVGYDNINDVEQFRDHELMVSADD--QQPLDDGQYYYHQIIGLDVETTDGRHLGKIKEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + ++ ++ L+P V V+L +N + ++
Sbjct: 122 LSPGANDVWVVERPEKRDLLLPVIDDVVKNVDLDKNLVTVE 162
>gi|59800629|ref|YP_207341.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA 1090]
gi|268594157|ref|ZP_06128324.1| ribosome maturation factor rimM [Neisseria gonorrhoeae 35/02]
gi|268602998|ref|ZP_06137165.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|268685943|ref|ZP_06152805.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
gi|67461229|sp|Q5FA58|RIMM_NEIG1 RecName: Full=Ribosome maturation factor rimM
gi|59717524|gb|AAW88929.1| putative 16S rRNA processing protein [Neisseria gonorrhoeae FA
1090]
gi|268547546|gb|EEZ42964.1| ribosome maturation factor rimM [Neisseria gonorrhoeae 35/02]
gi|268587129|gb|EEZ51805.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|268626227|gb|EEZ58627.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
Length = 169
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L + D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|160900776|ref|YP_001566358.1| 16S rRNA-processing protein RimM [Delftia acidovorans SPH-1]
gi|209573576|sp|A9BNS8|RIMM_DELAS RecName: Full=Ribosome maturation factor rimM
gi|160366360|gb|ABX37973.1| 16S rRNA processing protein RimM [Delftia acidovorans SPH-1]
Length = 189
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+AT +++ ++A LR +++ R DF + E+ E++ DL + +R+G G V
Sbjct: 81 VATSPVVNDRNTAEALRGARIFVARSDFP--QPEDGEYYWVDLLGLSVVNREGVVLGVVR 138
Query: 121 GVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G ++L + ++ E+ +IPF V +V+L I+ D
Sbjct: 139 DLLSTGPQTVLVLAYEEDGKERERMIPFVDAYVDKVDLPGKTIVAD 184
>gi|148655438|ref|YP_001275643.1| 16S rRNA processing protein RimM [Roseiflexus sp. RS-1]
gi|172048081|sp|A5USU0|RIMM_ROSS1 RecName: Full=Ribosome maturation factor rimM
gi|148567548|gb|ABQ89693.1| 16S rRNA processing protein RimM [Roseiflexus sp. RS-1]
Length = 182
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 6/162 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR----KNKRF 60
D+++L+ + GL GE+ I + + L R+V E R + R K
Sbjct: 9 DEVLLIGKVIDAFGLRGEIKIRAITDQVDHLRRHVRTVFLGEERRPFTLQRVHEPKAGIL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I + G+ + +A LR ++ + D L++DE+F L + + G G V
Sbjct: 69 ILSLGGVTDRTTAEALRGAEVTIRECDAA--PLDQDEYFIHQLYGLRVIESGGGEIGVVR 126
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V GA ++ ++ L+P V +++ +I++
Sbjct: 127 EVVQTGANDVIVVERQGRSDTLLPMIHDVVERLDVAAGQIVV 168
>gi|297617095|ref|YP_003702254.1| 16S rRNA processing protein RimM [Syntrophothermus lipocalidus DSM
12680]
gi|297144932|gb|ADI01689.1| 16S rRNA processing protein RimM [Syntrophothermus lipocalidus DSM
12680]
Length = 178
Score = 40.8 bits (94), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRELRILKMYRKNKRFIA- 62
L+ + + T G G++ + + P N ++ DN E+ ++ + F+
Sbjct: 5 LITVGEVCGTFGTEGKLKVRPLTDFPERFNGMKEVLVQQGDNVEVLTIEAVSPLRDFMVF 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID A L ++ Y K + L ED ++ L+ +E +D + G + V
Sbjct: 65 KFRGIDTREQARCL--VRAYLKVPPSEVFPLPEDCYYIFQLKGLEVYDDTRGFLGTITDV 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA + ++ LIP K V ++ L+E ++
Sbjct: 123 IQTGANDVYVVQGGPFGEVLIPAIKQVVRDIRLEEGRV 160
>gi|311745562|ref|ZP_07719347.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
gi|126578122|gb|EAZ82342.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
Length = 176
Score = 40.8 bits (94), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILK---MYRKNKRFIATF 64
+ + HGL GEV + +NP D ++ +R + + + + +A F
Sbjct: 9 LGYVAKVHGLRGEVVVVLDTDNPEDYEDLEHLFLEQKSRLVPFFLEHFVLQPGNKVLAKF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
D+++ A EL ++Y ELE+D+++ +L E FD G V VY+
Sbjct: 69 EDYDSLNQAEELVGSEVYLPLTALP--ELEDDQYYFHELIGFEVFDETIGLIGTVQVVYD 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+L + + K LIP + EV+ K+
Sbjct: 127 LETQDLLGVTHQG-KEVLIPIQDGIIQEVDKTAKKV 161
>gi|309809535|ref|ZP_07703393.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|312874410|ref|ZP_07734440.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
gi|312874549|ref|ZP_07734574.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|308170207|gb|EFO72242.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|311089940|gb|EFQ48359.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|311090022|gb|EFQ48436.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
Length = 173
Score = 40.8 bits (94), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GEV + + + P + N Y+ + ++ + + ++
Sbjct: 6 FVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQAYLVK 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WGQVCGV 122
F I++I A+ + + LY +D D L + ++ L ++ FD + K G + +
Sbjct: 66 FLQINDIDEANRIVNKNLYVSDEDQTD--LPKGSYYIHQLIGLDVFDYETKTKIGILTDI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA I EI K F IP V +V+L KI
Sbjct: 124 EMPGANDIWEITPNKGKIFWIPNISSVVKQVDLVNKKI 161
>gi|290967719|ref|ZP_06559274.1| 16S rRNA processing protein RimM [Megasphaera genomosp. type_1 str.
28L]
gi|290782235|gb|EFD94808.1| 16S rRNA processing protein RimM [Megasphaera genomosp. type_1 str.
28L]
Length = 167
Score = 40.8 bits (94), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 32/174 (18%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM---YRKNKRFIA 62
+L + I HG+ G+V I Y + + R L+M Y KR+
Sbjct: 5 ELFTIGKIVAPHGVRGDVRI---------------YPDTDFPERFLQMKYGYIAGKRYEI 49
Query: 63 T------------FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
T F+G+ + ++A L + +L R+D L+ ++ DL + +D
Sbjct: 50 TAARFHKHVILMKFAGVQDRNAAEALVNHELQVPREDLM--PLKPGRYYIFDLIGIPVYD 107
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
Q Y G + V G+ + ++ + L V E+NL E+KI+++P
Sbjct: 108 LQNTYLGILTEVLKTGSNDVYVVRTDNGEEQLFAAIPSVVKEINLDEHKIILNP 161
>gi|313884836|ref|ZP_07818588.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619527|gb|EFR30964.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNR--ELRILKMYRKNKRFIAT 63
+ + THG+ G++ + + + P N+ + +D ++ +L + +I +
Sbjct: 6 IGRVVNTHGIRGQIKVIADTDFPESRFASGNKLYILKDDQALAQVTVLDSRQAKGTYILS 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F DNI+ + L + EELE+D +++ + +E QG G++ +
Sbjct: 66 FEEFDNINQVEGFKGSWLAIDSSN--QEELEDDVYYHHQIIGLEVVTHQGLKLGKIKEIL 123
Query: 124 NFGAGSILEIK--NTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ + +K + LIP+ V EV+L++ +++I
Sbjct: 124 QLGSNDVWVVKRHENNKADALIPYIDDVVKEVDLEKGQVII 164
>gi|325981448|ref|YP_004293850.1| ribosome maturation factor rimM [Nitrosomonas sp. AL212]
gi|325530967|gb|ADZ25688.1| Ribosome maturation factor rimM [Nitrosomonas sp. AL212]
Length = 167
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT-----F 64
M I +G++G + I+ Y + L Y + + + K++ N T
Sbjct: 1 MGHIIGPYGVHGWIKINPYTEHLDGLMEYPQWWLGDEKAEWNKVHVVNGHIYGTTLLVKL 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ A++L+ +++ R D E D ++ TDL + + +G+ G V G++
Sbjct: 61 KEYSDRTQATKLKGIQIAIPRDWLPDLPENGVDGYYWTDLINAKVLNLKGEKLGTVVGLF 120
Query: 124 NFGAGSILEI--KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + +K LIP V++V+L+ +I++D
Sbjct: 121 ETGANDVLRIVKMDQEKKEILIPCISQYVMKVDLKNAQIIVD 162
>gi|296876415|ref|ZP_06900467.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
15912]
gi|296432705|gb|EFH18500.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
15912]
Length = 172
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + + L+ ++R ++ + + +RK+K F I
Sbjct: 6 VGKIVNTLGLQGEMRVLSVTDFTEERFKKGAELALFDEEDRFVQTVTIASHRKHKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + +I++ + + L +D D L+E EF+ ++ ++ ++ + GQ+ +
Sbjct: 66 KFKDMYHINAIEKFKGFSLKVAEEDLTD--LDEGEFYYHEIIGLDVYEND-QLIGQIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL +++ N++ +D I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVD-ILEGLDD 170
>gi|163839830|ref|YP_001624235.1| 16S rRNA-processing protein RimM [Renibacterium salmoninarum ATCC
33209]
gi|162953306|gb|ABY22821.1| 16S rRNA processing protein [Renibacterium salmoninarum ATCC 33209]
Length = 201
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNRELRILKM--YRKNKR-FIAT 63
V + IG HG+ GEV ++ + P + + ++S + L + R NK +
Sbjct: 29 VHVGRIGKPHGIRGEVTVEVLTDTPQERFSAGAVFSTEPTSAGPLTVETARWNKDILLLG 88
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGV 122
F +++ + A LR +L + +E E D ++ +L +E R G + G+V +
Sbjct: 89 FEEVNDRNRAETLRGTRLIFETDSVASDESESDSWYEHELIGLEA--RVGDQTVGKVSAL 146
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +L I + L+PF V EV++ I + P
Sbjct: 147 NPMPAQDLLVITTAAGEEVLVPFVAEIVPEVDIAAGFIRLVP 188
>gi|296104278|ref|YP_003614424.1| 16S rRNA-processing protein RimM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058737|gb|ADF63475.1| 16S rRNA-processing protein RimM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 179
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+ +G+ G + + S A++ + + + E L+ +R N+ I
Sbjct: 11 IVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKGGKWEEVELESWRHHNQDIIIK 70
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 71 LKGVDDRDAANALTNCEIVVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 128
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 129 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATQTIEVD 174
>gi|209573735|sp|A9WP46|RIMM_RENSM RecName: Full=Ribosome maturation factor rimM
Length = 175
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNRELRILKM--YRKNKR-FIAT 63
V + IG HG+ GEV ++ + P + + ++S + L + R NK +
Sbjct: 3 VHVGRIGKPHGIRGEVTVEVLTDTPQERFSAGAVFSTEPTSAGPLTVETARWNKDILLLG 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGV 122
F +++ + A LR +L + +E E D ++ +L +E R G + G+V +
Sbjct: 63 FEEVNDRNRAETLRGTRLIFETDSVASDESESDSWYEHELIGLEA--RVGDQTVGKVSAL 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
A +L I + L+PF V EV++ I + P
Sbjct: 121 NPMPAQDLLVITTAAGEEVLVPFVAEIVPEVDIAAGFIRLVP 162
>gi|148544376|ref|YP_001271746.1| 16S rRNA-processing protein RimM [Lactobacillus reuteri DSM 20016]
gi|184153740|ref|YP_001842081.1| 16S rRNA-processing protein RimM [Lactobacillus reuteri JCM 1112]
gi|227363199|ref|ZP_03847333.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM2-3]
gi|325682696|ref|ZP_08162212.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM4-1A]
gi|166985956|sp|A5VKN5|RIMM_LACRD RecName: Full=Ribosome maturation factor rimM
gi|229564323|sp|B2G819|RIMM_LACRJ RecName: Full=Ribosome maturation factor rimM
gi|148531410|gb|ABQ83409.1| 16S rRNA processing protein RimM [Lactobacillus reuteri DSM 20016]
gi|183225084|dbj|BAG25601.1| 16S rRNA processing protein RimM [Lactobacillus reuteri JCM 1112]
gi|227071805|gb|EEI10094.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM2-3]
gi|324977046|gb|EGC13997.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM4-1A]
Length = 168
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 10 MATIGTTHGLNGEV-------YIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI- 61
+ I THG+ GEV +ID L Y+ S + L I + R++K F+
Sbjct: 6 VGKIVNTHGVRGEVRVLATTDFIDERFAKGNTL--YLQQSGEPLPLTI-ESTRQHKGFVL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G DNI+ + RD +L D + L++ +++ + ++ G++ G++
Sbjct: 63 VKFVGYDNINDVEQFRDHELMVSADD--QQPLDDGQYYYHQIIGLDVETTDGRHLGKIKE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA + ++ ++ L+P V V+L +N + ++
Sbjct: 121 ILSPGANDVWVVERPEKRDLLLPVIDEVVKNVDLDKNFVTVE 162
>gi|330836481|ref|YP_004411122.1| Ribosome maturation factor rimM [Spirochaeta coccoides DSM 17374]
gi|329748384|gb|AEC01740.1| Ribosome maturation factor rimM [Spirochaeta coccoides DSM 17374]
Length = 173
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 13 IGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKM--YRKNKR-FIATFSG 66
I T HG+ GEV + + + P L L S D + +R K+ R R I F
Sbjct: 13 IKTPHGIRGEVKVVLFGDAPEWFKKLKNVELRSPDGKAIRTCKVETCRMTSRMLIVKFQE 72
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME-TFDRQGKYWGQVCGVYNF 125
D +A + +++ R+ K LE+ E++ +DL T D Q V G +
Sbjct: 73 FDTPETARSVSGWEVWIPRE--KAAPLEKGEYYLSDLMGCNLTVDGQAV--AHVVGFVDT 128
Query: 126 GAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILI 162
+LE+ +++ +T+ +PF+ +V++ I++
Sbjct: 129 VHPILLEVVASVDGRTYYVPFSAHFTGDVDVTGKTIVL 166
>gi|312863918|ref|ZP_07724156.1| 16S rRNA processing protein RimM [Streptococcus vestibularis F0396]
gi|311101454|gb|EFQ59659.1| 16S rRNA processing protein RimM [Streptococcus vestibularis F0396]
Length = 172
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + VL D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNHIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGDS-LIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|317049259|ref|YP_004116907.1| 16S rRNA processing protein RimM [Pantoea sp. At-9b]
gi|316950876|gb|ADU70351.1| 16S rRNA processing protein RimM [Pantoea sp. At-9b]
Length = 182
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
V++ +G +G+ G + + S A + D + + +L L+ ++ N+ I
Sbjct: 14 VVLGKMGAAYGIRGWLKVFSSTEEAESIFDYQPWFIQHAGQWQLVELEGWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+GID+ +A++L + ++ LEE +++ DL + + +G G+V +
Sbjct: 74 VNGIDDRDAAAQLTNCEITVDSAQLP--ALEEGDYYWKDLMGCKVVNLEGYEMGKVIDLM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKKVDLSTGTIEVD 177
>gi|225025696|ref|ZP_03714888.1| hypothetical protein EIKCOROL_02598 [Eikenella corrodens ATCC
23834]
gi|224941477|gb|EEG22686.1| hypothetical protein EIKCOROL_02598 [Eikenella corrodens ATCC
23834]
Length = 160
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ I + +A LR + KR DF E E E++ DL + +RQ + G V +
Sbjct: 59 FAEISDRDAAQLLRGYTIEIKRSDF--EPAREGEYYWADLVGLTVHNRQNELIGTVNSLM 116
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA IL + + LIPF + V+L++ I+ D
Sbjct: 117 ETGAHDILVVDGEHGRK-LIPFVDHYIDNVDLEQGSIIAD 155
>gi|332289617|ref|YP_004420469.1| 16S rRNA-processing protein RimM [Gallibacterium anatis UMN179]
gi|330432513|gb|AEC17572.1| 16S rRNA-processing protein RimM [Gallibacterium anatis UMN179]
Length = 174
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FI 61
K+ ++ +G+T+G+ G + + S YA + D + L + ++ +R + + I
Sbjct: 5 KIGVVGKLGSTYGIRGWLRVYSSTEYAESIFDYQPWFLNIKKQWQPVEIEGWRHHSQDLI 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L ++++ EL+E EF+ DL + QG G V
Sbjct: 65 VKIKGVDDREQAQTLANIEIGVDLNQLP--ELDEGEFYWHDLIGCRVINLQGYDMGVVSE 122
Query: 122 VYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLEVNLQENKILID 163
+ G+ +L ++ + F LIP+ V V+L I +D
Sbjct: 123 LMETGSNDVLVVQANGKDAFAKQERLIPYIDAVVKRVDLSTKVIEVD 169
>gi|160892785|ref|ZP_02073575.1| hypothetical protein CLOL250_00316 [Clostridium sp. L2-50]
gi|156865826|gb|EDO59257.1| hypothetical protein CLOL250_00316 [Clostridium sp. L2-50]
Length = 163
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 12/152 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRFIA 62
M I HG+ GEV + + DLNR+ ++ + E +
Sbjct: 1 MGVITAPHGIKGEVKVYPTTD---DLNRFKSLKKCFLVSGSKEIETECTSCKFLKNMVVL 57
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+G D+I+ LR + R+D LE+ EFF D+ + +D+ G + V
Sbjct: 58 KFAGYDSINDVEALRQYDILVNREDAV--ALEDGEFFICDVIGSKVYDQNDTEIGVIDDV 115
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVN 154
A I IK + +P K V +++
Sbjct: 116 LETPANHIFVIKKKGQDDIYVPVVKEWVTDID 147
>gi|258593817|emb|CBE70158.1| 16S rRNA processing protein, putative function [NC10 bacterium
'Dutch sediment']
Length = 175
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 18 GLNGEVYIDSYANN-PIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
GLNGEV + YA++ I L+ + D E + ++ + + ++ G+ I
Sbjct: 17 GLNGEVKVQPYADSIVIAAGAATLHLRAATGDLVEYVVERVRQVGRAWVLQLRGVQTIEQ 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A +L +L + L + +++ DL + G+ G++ + GA +
Sbjct: 77 AEQLVGRELLISKSTAPT--LPDGTYYHADLIGLRVVTEDGRELGRIVDILETGANDVYV 134
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + +L+P T+ V +V+L +LI
Sbjct: 135 VHGGGSE-WLVPATREVVRKVDLARKMMLI 163
>gi|116071641|ref|ZP_01468909.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
gi|116065264|gb|EAU71022.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
Length = 180
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLY-SNDNRELRILKMYRK-- 56
L++ + + I GL GE+ ++ ++ P + R+V + RE++ LK R+
Sbjct: 8 LEEWLTVGKIVGVQGLQGELRVNPASDFPERFTVPGPRWVRSKGSAPREVQ-LKSGRQLP 66
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGK 114
F+ +DN ++A L D L E EF DL +E
Sbjct: 67 GKSLFVVRLDSVDNRNAAEALVGSDWMVPADDRP--ALGEGEFHLLDLVGLEARLSLDSD 124
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G V + + G +L+IK + T LIPF + V EV+L++ +L+ P
Sbjct: 125 PIGTVTDLIS-GGNDLLQIKRSNGSTLLIPFVEAIVPEVHLKDGWLLLTP 173
>gi|72383019|ref|YP_292374.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
NATL2A]
gi|109893031|sp|Q46IK7|RIMM_PROMT RecName: Full=Ribosome maturation factor rimM
gi|72002869|gb|AAZ58671.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str.
NATL2A]
Length = 176
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-NRELRILK--M 53
M + DK + + I GL G++ I ++ P R++ +++ E+++ K +
Sbjct: 1 MFEKDKWMTIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
++ + G+ SA E+ KL L +DE+ DL +E R+G
Sbjct: 61 IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDS--RPMLSKDEYHYHDLIGLEA--RRG 116
Query: 114 KYWGQVCGVYNF--GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ V + G +LEI+ K L+PF K V E+ ++E +LI+P
Sbjct: 117 PSKALIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINP 169
>gi|260435475|ref|ZP_05789445.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
gi|260413349|gb|EEX06645.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
Length = 177
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRI-LKMYR 55
M + ++ + + I GL GE+ ++ ++ P R++ I LK R
Sbjct: 1 MAETNEWLSVGKIVGVQGLQGELRVNPASDFPERFTAPGPRWLRSRKGGEPTEIQLKKGR 60
Query: 56 K---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDR 111
+ F+ GID+ +A L +L D ELEE EF DL +E
Sbjct: 61 QLPGKSLFVVRLEGIDSRSAAETLVGHELLVSADDRP--ELEEGEFHLLDLLGLEARLTA 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G G V + + G +LEI + + LIPF + V +V L++
Sbjct: 119 DGPAVGTVSDLIS-GGNDLLEITTSEGRKLLIPFVEAIVPKVQLEDG 164
>gi|24379321|ref|NP_721276.1| 16S rRNA-processing protein RimM [Streptococcus mutans UA159]
gi|48474854|sp|Q8DUN7|RIMM_STRMU RecName: Full=Ribosome maturation factor rimM
gi|24377244|gb|AAN58582.1|AE014928_3 putative 16S rRNA processing protein [Streptococcus mutans UA159]
Length = 172
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK+K F I F G+ +I+ + RD L D LE+ EF+ ++ ++ ++
Sbjct: 56 HRKHKNFDIVKFKGLYHINDVEKYRDFTLKVTEDHLAD--LEDGEFYYHEIIGLDVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GQV + GA + +K +K L+P+ +L+V++ +I
Sbjct: 114 -ILIGQVKEILQPGANDVWVVKRKGKKDLLLPYIPSVILKVDVPNGRI 160
>gi|221068772|ref|ZP_03544877.1| 16S rRNA processing protein RimM [Comamonas testosteroni KF-1]
gi|220713795|gb|EED69163.1| 16S rRNA processing protein RimM [Comamonas testosteroni KF-1]
Length = 189
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 56 KNKRF-----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
K RF +AT + + ++A LR +++ R+ F + ++ EF+ DL ++ +
Sbjct: 71 KQARFHADTIVATSQEVADRNAAEALRGARIFVAREHFP--KTDDGEFYWVDLMGLQVVN 128
Query: 111 RQGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
R+G G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 129 REGVALGVVRDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 184
>gi|254492677|ref|ZP_05105848.1| 16S rRNA processing protein RimM [Methylophaga thiooxidans DMS010]
gi|224462198|gb|EEF78476.1| 16S rRNA processing protein RimM [Methylophaga thiooxydans DMS010]
Length = 172
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M ++ + + I G+ G V + S+ + ++ Y L+ + E +K+ + +
Sbjct: 1 MATSEEFIPVGKISGAFGIKGWVKVFSFTDPRTNILEYSPLFLSRQGEWIEIKVSGGHLQ 60
Query: 60 FIATFSGIDNIHSASELRDL---KLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
GI N+ +++ L +L K++ E EEDEF+ +DL+ + + + +
Sbjct: 61 GKGVVMGIANVTDRDQVQPLIGSELAIKKEQL--EPAEEDEFYWSDLQGLTVMNLEDETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLE-VNLQENKILID 163
GQV + GA +L +K E T LIPF +++ V+L + I +D
Sbjct: 119 GQVDHLLETGANDVLVVKAKGENTERLIPFVMEEIVKAVDLDKQLIQVD 167
>gi|148652017|ref|YP_001279110.1| 16S rRNA processing protein RimM [Psychrobacter sp. PRwf-1]
gi|172048453|sp|A5WBW9|RIMM_PSYWF RecName: Full=Ribosome maturation factor rimM
gi|148571101|gb|ABQ93160.1| 16S rRNA processing protein RimM [Psychrobacter sp. PRwf-1]
Length = 176
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/167 (17%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D L+ + + +G+ G +++ S + Y + + + L + + R+
Sbjct: 7 DSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWRRQGTGI 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A F + + + A + + ++ + EEDE++ +DL + ++Q + G V
Sbjct: 67 VAQFEQVPDRNVAETMNGVSIWIDKDSLP--STEEDEYYWSDLVGLSVINKQDECLGTVK 124
Query: 121 GVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILID 163
++ GA I+++ + ++ +IP+ K V V+L ++++D
Sbjct: 125 ELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVVDLAAGRMVVD 171
>gi|256847351|ref|ZP_05552797.1| 16S rRNA processing protein RimM [Lactobacillus coleohominis
101-4-CHN]
gi|256716015|gb|EEU30990.1| 16S rRNA processing protein RimM [Lactobacillus coleohominis
101-4-CHN]
Length = 171
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 74/161 (45%), Gaps = 11/161 (6%)
Query: 10 MATIGTTHGLNGEVY---IDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF-IATF 64
+ I THG+ GEV I +A+ ++ ++ + + ++ R +K + F
Sbjct: 9 VGKIVNTHGIRGEVRVVPITDFADERFKAGSQLVIEKNHEYIPVTIEKARPHKGMELVKF 68
Query: 65 SGIDNIHSASELRD--LKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G DNI+ + RD L + +QD EL + E++ + ++ G++ G++ +
Sbjct: 69 QGFDNINEVEKFRDCFLAVSGDQQD----ELADGEYYYHQIIGLDVVTVDGRHLGKIKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + ++ + L+P + +V+L + + ++
Sbjct: 125 MSPGANDVWVVQRENQSDLLLPVINDVIKDVDLAKQVVTVE 165
>gi|169837239|ref|ZP_02870427.1| 16S rRNA processing protein rimM [candidate division TM7
single-cell isolate TM7a]
Length = 113
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K+ I F IDN+ SA EL K+ +R E ED+F+ DL +E F K G
Sbjct: 3 KKAILDFEEIDNVDSAKELNGYKVKIRRDLLP--EKSEDDFYIKDLFGLEVFSENNKI-G 59
Query: 118 QVCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKI 160
++ V A +IL I++ +K +IP V +++ KI
Sbjct: 60 EIVDVMETAAHNILIIEDIDTKKEIMIPLIDEFVTKIDFPNGKI 103
>gi|312866720|ref|ZP_07726934.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
F0405]
gi|311097801|gb|EFQ56031.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
F0405]
Length = 175
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK+K F I F + +I++ + + L +D D L+E EF+ ++ ++ ++
Sbjct: 59 HRKHKNFDIIKFKDMYHINAIEKFKGFSLKVAEEDLTD--LDEGEFYYHEIIGLDVYEND 116
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GQ+ + GA + +K ++ L+P+ VL +++ N++ +D I GL++
Sbjct: 117 -QLIGQIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVD-ILEGLDD 173
>gi|125623777|ref|YP_001032260.1| 16S rRNA-processing protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|166226447|sp|A2RJS5|RIMM_LACLM RecName: Full=Ribosome maturation factor rimM
gi|124492585|emb|CAL97530.1| 16S rRNA processing protein rimM [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070546|gb|ADJ59946.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 171
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-----FI 61
+ TI T GL GEV I +AN VL D+++ I + K+ R ++
Sbjct: 7 VGTIVNTQGLQGEVRILPSTDFANERFSKGA-VLALFDDKDNYIQDLKVKSGRLQKNFYV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G +I+ + + + +++ EEL + EF+ ++ + +D GQ+
Sbjct: 66 VKFEGFYHINDVEKYKGYVVKIAQEN--QEELNDGEFYYHEIIGSDVYDND-ILIGQISE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL+V++ ++++ +D I GL++
Sbjct: 123 ILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVD-IMEGLDD 171
>gi|167581078|ref|ZP_02373952.1| 16S rRNA-processing protein [Burkholderia thailandensis TXDOH]
Length = 221
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
R+ + + +A +G + +A LR +++ +R DF L DEF+ DL ++
Sbjct: 96 RVTQAKLHSDAVVAHPAGSVDRDTALALRGFRVFVRRGDF--PALAADEFYWVDLIGLDV 153
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQEN 158
+ G G+V + + G SI+ ++ T E+ LIPF V V
Sbjct: 154 VNEAGVALGKVADMIDNGVHSIMRVEYPATGKDGRPTTGER--LIPFVGVYVKAVEQAAG 211
Query: 159 KILID 163
+I++D
Sbjct: 212 RIVVD 216
>gi|307546452|ref|YP_003898931.1| 16S rRNA processing protein RimM [Halomonas elongata DSM 2581]
gi|307218476|emb|CBV43746.1| 16S rRNA processing protein RimM [Halomonas elongata DSM 2581]
Length = 183
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVL-YSNDNRELRILKMYRKNKRFIAT 63
V++ + + +G+ G + + SY + +D +VL + R+ + K +A
Sbjct: 14 VVLGKLTSPYGVKGWLRVYSYTSPMEGILDYGEWVLRHRGVESRYRLAQGRLHGKGLVAR 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L ++ + E E+D+F+ LE + +G G+V ++
Sbjct: 74 LEGVDGRDQAESLAGAEVLLPTAELP-ELPEDDDFYWYQLEGLSVVTTEGVALGRVEYLF 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
GA ++ IK ++ L+PF V+ EV+L+ ++++D
Sbjct: 133 ETGANDVMVIKGRDGESIDARERLLPFLPDEVVREVDLEAGRMVVD 178
>gi|240080061|ref|ZP_04724604.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA19]
gi|240122851|ref|ZP_04735807.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
Length = 160
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIATF 64
M I G+ G + I + Y+++ +D + L + D + + + K N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQVKF 59
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 60 EGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNLME 117
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA IL I + LIPF + V+ I D
Sbjct: 118 TGANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 155
>gi|323493647|ref|ZP_08098768.1| 16S rRNA-processing protein RimM [Vibrio brasiliensis LMG 20546]
gi|323312170|gb|EGA65313.1| 16S rRNA-processing protein RimM [Vibrio brasiliensis LMG 20546]
Length = 182
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 DDKIVVGKFGATYGIRGWLKVFSYTDNTESIFDYTPWFIKQGEKWVEYKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +D A + + ++ EL DEF+ DL M+ +G G V
Sbjct: 71 VVKLEDLDVREEAQLMTNFEISIDPAVLP--ELPSDEFYWRDLIGMQVVTDKGYDLGIVS 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
+ G+ +L IK ++ F LIPF + V++ ++ + +I +D
Sbjct: 129 DMLETGSNDVLVIKANLKDAFGQKERLIPFLEEQVIKNIDREAQRIEVD 177
>gi|134301360|ref|YP_001121328.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis WY96-3418]
gi|166226442|sp|A4IWA6|RIMM_FRATW RecName: Full=Ribosome maturation factor rimM
gi|134049137|gb|ABO46208.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 169
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ LNGE+ + S AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I+N +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|295097176|emb|CBK86266.1| 16S rRNA processing protein RimM [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 179
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+ +G+ G + + S + + Y + + E+ + N+ I
Sbjct: 11 IVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKAGKWEEVELESWRHHNQDIIIK 70
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 71 LKGIDDRDAANALTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 128
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 129 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTQTIEVD 174
>gi|311068122|ref|YP_003973045.1| 16S rRNA-processing protein RimM [Bacillus atrophaeus 1942]
gi|310868639|gb|ADP32114.1| 16S rRNA-processing protein RimM [Bacillus atrophaeus 1942]
Length = 174
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNR--YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S +A + Y+ S +++ ++ +R +K+F +
Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGKTLYLFMSGSKEPVQVTVQTHRLHKQFHLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++ EL++ + +D EL+ E++ ++ E + G+ G + +
Sbjct: 68 QFKERPSLNDVEELKNAIIKVPEEDLG--ELDAGEYYFHEIIGCEVYTEDGERIGVIREI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + ++ +K LIP+ + V ++++ E KI I
Sbjct: 126 LTPGANDVWVVERKGQKDALIPYIESIVKDIDVTEKKIQI 165
>gi|78780083|ref|YP_398195.1| 16S rRNA-processing protein [Prochlorococcus marinus str. MIT 9312]
gi|123553678|sp|Q318D6|RIMM_PROM9 RecName: Full=Ribosome maturation factor rimM
gi|78713582|gb|ABB50759.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9312]
Length = 179
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSNDN-RELRIL 51
M+ +K +++ I + HG+NG++ + S + D R++ N+ ++ +
Sbjct: 1 MINNNKWLVVGLITSCHGINGQLKVKSLS----DFEERFLKPGIRWLQKENEPPSKIELT 56
Query: 52 KMYRKNKR--FIATFSGIDNIHSASELRDLKLYAKRQDF---KDEELEEDEFFNTDLEEM 106
+++ + FI GI+N + A L+ K+ K K EE E N +++ +
Sbjct: 57 SGFKQPGKETFIIKLQGINNRNQAERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTL 116
Query: 107 ETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
E + + K G+V + N ++ +K LIPF K V V+++ N ++I+P
Sbjct: 117 E--NEELKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPLVDIKNNFLIINP 172
>gi|296314964|ref|ZP_06864905.1| 16S rRNA processing protein RimM [Neisseria polysaccharea ATCC
43768]
gi|296838161|gb|EFH22099.1| 16S rRNA processing protein RimM [Neisseria polysaccharea ATCC
43768]
Length = 169
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTVSVTLEAGKVVNSELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|257066789|ref|YP_003153045.1| 16S rRNA processing protein RimM [Anaerococcus prevotii DSM 20548]
gi|256798669|gb|ACV29324.1| 16S rRNA processing protein RimM [Anaerococcus prevotii DSM 20548]
Length = 162
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A + TTHG+ G V + S+++ ++ + L I + + + F
Sbjct: 3 ITVAEVITTHGIKGNVKVKSFSDYEKRFDKGSKVYIGDELLTIEDSFDQKGLKVIKFVEY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDE---ELEEDEFFNTDLEEMETFD---RQGKYWGQVCG 121
++I+ + LKL K ++E EL+EDEF+ L ++T+ + GK + G
Sbjct: 63 NDINDS-----LKLVGKDITIEEEDLGELKEDEFYIYKLIGLDTYSNGQKVGKVKDVISG 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
VY + I+ T K L+P K + V++ NKI +D
Sbjct: 118 VY---PNDVYVIETTDNKEILLPALKTVIKNVDIANNKIEVD 156
>gi|313673957|ref|YP_004052068.1| 16S rRNA processing protein rimm [Calditerrivibrio nitroreducens
DSM 19672]
gi|312940713|gb|ADR19905.1| 16S rRNA processing protein RimM [Calditerrivibrio nitroreducens
DSM 19672]
Length = 171
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDNREL---RILKMYRKNKRFIATF 64
+ + THGL+GE+ + N ++ Y+L + L +I + N + F
Sbjct: 6 IGFVKGTHGLDGEIKLAMNTENIEMMENLEYLLLGKNRNPLFSGKIEYIAPMNDLLLVKF 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I++I +A + + ++ E DE + +E + FD G +G +
Sbjct: 66 ENINDIDAAMKFKGYEVLVPENLLPAEN--SDEVYWFKIEGADVFDENGTKFGTLIDYIE 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ I IK +K +LI K VL++++ +KI+I
Sbjct: 124 GGSSDIFRIKGFDDKYYLISNNKSHVLKIDVDNHKIVI 161
>gi|312139214|ref|YP_004006550.1| 16S rRNA processing protein rimm [Rhodococcus equi 103S]
gi|325673479|ref|ZP_08153170.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
gi|311888553|emb|CBH47865.1| 16S rRNA processing protein RimM [Rhodococcus equi 103S]
gi|325555500|gb|EGD25171.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
Length = 188
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMY--------RKNK 58
+++ + +HG+ GE+ ++ + P + R+ + + R+ R K++ +
Sbjct: 3 LVVGRVAKSHGIRGELVVEVRTDEPEE--RFAVGAELRGRKPRENKLHTYTVEAAREHSG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK---- 114
R + G+ + +A LR D + + DEF++ +LE + G+
Sbjct: 61 RLLLRLEGVADRTAADNLRGTLFVIDTADLTPSD-DPDEFYDHELEGLTVRMAAGRPDAG 119
Query: 115 -YWGQVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILIDP 164
G V V + AG +L I+ + + L+PF V V++ + I IDP
Sbjct: 120 TPVGTVLEVLHSAAGELLSIRPEGQTSGELLVPFVTAIVPTVSVADGLIEIDP 172
>gi|238798964|ref|ZP_04642427.1| Ribosome maturation factor rimM [Yersinia mollaretii ATCC 43969]
gi|238717193|gb|EEQ09046.1| Ribosome maturation factor rimM [Yersinia mollaretii ATCC 43969]
Length = 186
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S N + Y + + + + + R ++ I
Sbjct: 18 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIK 77
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ + LEED+++ DL + G G++ +
Sbjct: 78 VKGVDDRDAANLLTNCEIIVDSKQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKIIDMM 135
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 136 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVD 181
>gi|300870911|ref|YP_003785782.1| putative RimM protein [Brachyspira pilosicoli 95/1000]
gi|300688610|gb|ADK31281.1| putative RimM protein required for 16S processing [Brachyspira
pilosicoli 95/1000]
Length = 159
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 17 HGLNGEV---YIDS--YANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIH 71
HGLNGEV +ID +A+ PI N +Y DN+E +I+ + +KNK F+ ID+I
Sbjct: 2 HGLNGEVECTFIDKSYFASLPILNNNTNIYI-DNQEYKIINIKKKNKSFVFKLEKIDSID 60
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A L +Y ++ L+++ F+ ++ D GK +G+V +Y+ + +
Sbjct: 61 DAKALIGKDIYIDYENLP--SLDDNSFYEAEIIGYNVIDSNGKLYGKVVDLYSLPSNYVF 118
Query: 132 EIK-NTMEKTFLIPFT 146
I ++ IPF
Sbjct: 119 VISLEDSKEEVSIPFV 134
>gi|290580675|ref|YP_003485067.1| putative 16S rRNA processing protein [Streptococcus mutans NN2025]
gi|254997574|dbj|BAH88175.1| putative 16S rRNA processing protein [Streptococcus mutans NN2025]
Length = 172
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK+K F I F G+ +I+ + RD L D LE+ EF+ ++ ++ ++
Sbjct: 56 HRKHKNFDIVKFKGLYHINDVEKYRDFTLKVTEDHLVD--LEDGEFYYHEIIGLDVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GQV + GA + +K +K L+P+ +L+V++ +I
Sbjct: 114 -ILIGQVKEILQPGANDVWVVKRKGKKDLLLPYIPSVILKVDVPNGRI 160
>gi|161502227|ref|YP_001569339.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189040850|sp|A9MGT6|RIMM_SALAR RecName: Full=Ribosome maturation factor rimM
gi|160863574|gb|ABX20197.1| hypothetical protein SARI_00251 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 183
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
V++ +G+++G+ G + + S A + D + + D + L+ ++ N+ I
Sbjct: 15 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKADQWQQVQLESWKHHNQDLIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|119486516|ref|ZP_01620574.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
gi|119456418|gb|EAW37549.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
Length = 203
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 46/196 (23%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYS--NDNRELRILKMYRKNKR--FI 61
+ I GL+GEV ++ + P R++L ++ + + +L+ + R ++
Sbjct: 7 IGKIVAAQGLDGEVRVNPNTDFPERFLEPGTRWLLQPGQSEPQPIELLEGRQIPGRSLYV 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI+N A LR+ L+ + D LEE+EF+ DL +E F++ K +V G
Sbjct: 67 LELEGIENREQAEALRNSTLFVSKSDRP--HLEENEFYLVDLIGLEVFNQLTK---EVIG 121
Query: 122 VYN--FGAGS-ILEIK---NTMEKT---------------------------FLIPFTKF 148
V AG+ +LE++ +T+E + LIPF K
Sbjct: 122 VVISLVPAGNDLLEVELYSSTLEPSEIPLDPDQSSADVSPTRRKKRKSKPKTVLIPFVKE 181
Query: 149 AVLEVNLQENKILIDP 164
V V+L +N++ I P
Sbjct: 182 IVPVVDLNKNRVEITP 197
>gi|171778252|ref|ZP_02919458.1| hypothetical protein STRINF_00300 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282952|gb|EDT48376.1| hypothetical protein STRINF_00300 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 182
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKRF-I 61
+ I T GL GE+ + S + + ++ ++ + +R E+ I +RK K F I
Sbjct: 16 VGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIAS-HRKQKNFDI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ +I+ + + L ++ ELE+ EF+ ++ ++ ++ GQV
Sbjct: 75 IKFKGMYHINDIEKYKGCTLKVAEENLS--ELEDGEFYYHEIIGLDVYEND-VLVGQVKE 131
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL V++ N++ +D I GL++
Sbjct: 132 ILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIAANRVDVD-ILEGLDD 180
>gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1]
gi|300073623|gb|ADJ63022.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1]
Length = 204
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 32/189 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL-NRYVLY----SNDNRELRILKMYRKNKR 59
D LV + + +G+ G + + Y++ L N + +++ +++ +
Sbjct: 13 DDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSGD 72
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A +G+ + ++A ++ + R+ F L+++EF+ DL + QG++ G V
Sbjct: 73 VVARLTGVADRNAAEAMKGTVVSISRKHFP--ALDDNEFYWVDLIGSAVENLQGEHLGVV 130
Query: 120 CGVYNFGAGSILEIKNTMEKT-------------------------FLIPFTKFAVLEVN 154
+ + GA IL++ ++ T LIPF V V
Sbjct: 131 SDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQ 190
Query: 155 LQENKILID 163
E KI++D
Sbjct: 191 QSEKKIIVD 199
>gi|288550296|ref|ZP_05969897.2| 16S rRNA processing protein RimM [Enterobacter cancerogenus ATCC
35316]
gi|288315695|gb|EFC54633.1| 16S rRNA processing protein RimM [Enterobacter cancerogenus ATCC
35316]
Length = 179
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+ +G+ G + + S + + Y + + E+ + N+ I
Sbjct: 11 IVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKAGKWEEVELESWRHHNQDIIIK 70
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 71 LKGVDDRDAANALTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYSLGKVIDMM 128
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 129 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTQTIEVD 174
>gi|87122823|ref|ZP_01078694.1| 16S rRNA processing protein RimM [Marinomonas sp. MED121]
gi|86161875|gb|EAQ63169.1| 16S rRNA processing protein RimM [Marinomonas sp. MED121]
Length = 181
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID----LNRYVLYSNDNRELRILKMYRKNKR-FIATF 64
+ I + +G+ G V I S+ +PI+ + + L + + L R R +A
Sbjct: 16 VGRITSVYGVKGWVKIYSH-TDPIEGIFKYSHWWLKTRTGWQAIELNQGRLQGRGLVAAV 74
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G + E+ + +Y + QD D L+E +++ + LE ++ +G G+V +
Sbjct: 75 KGYTDRDLVKEICGMDIYIEAQDLPD--LDEGDYYWSQLEGLKVITEEGVLLGKVAQMME 132
Query: 125 FGAGSILEIKNTM----EKTFLIPFTK-FAVLEVNLQENKILI--DP 164
GA +L ++ + LIP+ VL V+L++ ++L+ DP
Sbjct: 133 TGANDVLVVRACEGSLDREERLIPYVPDMYVLNVDLKQGQMLVNWDP 179
>gi|194097807|ref|YP_002000850.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae NCCP11945]
gi|239998300|ref|ZP_04718224.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 35/02]
gi|240013482|ref|ZP_04720395.1| 16S rRNA-processing protein [Neisseria gonorrhoeae DGI18]
gi|240015921|ref|ZP_04722461.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA6140]
gi|240112271|ref|ZP_04726761.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|240115015|ref|ZP_04729077.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|240117300|ref|ZP_04731362.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|240120554|ref|ZP_04733516.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID24-1]
gi|240125049|ref|ZP_04737935.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|240127562|ref|ZP_04740223.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
gi|193933097|gb|ACF28921.1| Probable 16S rRNA-processing protein rimM [Neisseria gonorrhoeae
NCCP11945]
gi|317163583|gb|ADV07124.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 160
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIATF 64
M I G+ G + I + Y+++ +D + L + D + + + K N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHL-AKDGKTVSVTLEAGKVVNGELQVKF 59
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID+ SA LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 60 EGIDDRDSAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDDTVLGKVSNLME 117
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 118 TGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 155
>gi|313890632|ref|ZP_07824260.1| 16S rRNA processing protein RimM [Streptococcus pseudoporcinus SPIN
20026]
gi|313121149|gb|EFR44260.1| 16S rRNA processing protein RimM [Streptococcus pseudoporcinus SPIN
20026]
Length = 172
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI---LKMYRKNKRF-IA 62
+ I T GL GE+ + S +A+ + +D + + +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVSDFADERFQKGSVLALFDDKNQFVTNVEIASHRKQKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F ++I++ + + L D L +DEF+ ++ ++ ++ + GQV +
Sbjct: 66 KFKEHNHINAIEKYKGFTLKVSESHLSD--LPKDEFYYHEIIGLDVYE-GNQLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ +L V+L+ +++ +D I GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVILNVDLEHHRVEVD-IMEGLDD 170
>gi|209573749|sp|A1R7G4|RIMM_ARTAT RecName: Full=Ribosome maturation factor rimM
Length = 184
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG HG+ GEV + + P + +V+ L I + F
Sbjct: 5 VARIGKPHGIRGEVTVQVLTDAPSERFVAGTEFVVEPASAGPLTIRSARWNKDILLLGFE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVYN 124
I + ++A +R KL+ + ++ DE+ +E ++ +L +E R G + G+V +
Sbjct: 65 EIADRNAAEVIRGAKLFIETEELSDEDDDEG-WYEHELVGLEA--RVGSQVVGKVAALST 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL---NNTTMKNPQYDC 181
+L + K LIPF V EVN++ ILI P +GL N+ K P+
Sbjct: 122 LPVQDLLTVTTEEGKEILIPFVDEIVPEVNVEGGYILITP-PSGLFEINDENAKEPK--- 177
Query: 182 PLDSAG 187
D AG
Sbjct: 178 --DGAG 181
>gi|294634742|ref|ZP_06713272.1| 16S rRNA processing protein RimM [Edwardsiella tarda ATCC 23685]
gi|291091841|gb|EFE24402.1| 16S rRNA processing protein RimM [Edwardsiella tarda ATCC 23685]
Length = 181
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
+DK V++ +G+ +G+ G + + S A + D + + L+ +R + +
Sbjct: 9 MDKAVILGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQGGKWVAIELESWRNHSQD 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ GID+ +A+ L + ++ LEE +++ DL + G G+V
Sbjct: 69 LVIKIKGIDDRDAANALVNREIAVDESQLP--ALEEGDYYWKDLMGCQVVTVAGYELGKV 126
Query: 120 CGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+ G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 127 TAMMETGSNDVLVVKANLKDAFGIKERLIPFLDGQVIKKVDLTAKSIEVD 176
>gi|284928664|ref|YP_003421186.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
gi|284809123|gb|ADB94828.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
Length = 195
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRE-LRILKM----YRK 56
+D ++ + TI GL GE+ + S + P +++ S+ N+ L+ +K+ Y
Sbjct: 10 IDNMLKIGTIVGPRGLKGELKVLSSTDFPERFEISEEHWISDPNKSTLQSVKLISSRYVM 69
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-K 114
K +I GI+ + A LR+ KL+ EL++DE+ + L +E + ++ K
Sbjct: 70 EKNIYIVRLQGIETRNQAELLRNYKLFISNHSIP--ELKKDEYHISQLINLEVYHQKTKK 127
Query: 115 YWGQVCGVYNFGAGSI-LEIKNTM------EKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G V V+ G + +E++N ++ FL+PF V V+L +I ++P
Sbjct: 128 LIGIVTDVFTTGHDLLEIELENPSLPESDKKQKFLVPFVYEIVPIVDLVNRRIELNPPKG 187
Query: 168 GLNNTTMK 175
L+ + +K
Sbjct: 188 LLDLSIVK 195
>gi|119962451|ref|YP_948176.1| 16S rRNA-processing protein RimM [Arthrobacter aurescens TC1]
gi|119949310|gb|ABM08221.1| 16S rRNA processing protein RimM [Arthrobacter aurescens TC1]
Length = 213
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG HG+ GEV + + P + +V+ L I + F
Sbjct: 34 VARIGKPHGIRGEVTVQVLTDAPSERFVAGTEFVVEPASAGPLTIRSARWNKDILLLGFE 93
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVCGVYN 124
I + ++A +R KL+ + ++ DE+ +E ++ +L +E R G + G+V +
Sbjct: 94 EIADRNAAEVIRGAKLFIETEELSDEDDDEG-WYEHELVGLEA--RVGSQVVGKVAALST 150
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL---NNTTMKNPQYDC 181
+L + K LIPF V EVN++ ILI P +GL N+ K P+
Sbjct: 151 LPVQDLLTVTTEEGKEILIPFVDEIVPEVNVEGGYILITP-PSGLFEINDENAKEPK--- 206
Query: 182 PLDSAG 187
D AG
Sbjct: 207 --DGAG 210
>gi|124026761|ref|YP_001015876.1| 16S rRNA-processing protein [Prochlorococcus marinus str. NATL1A]
gi|166226463|sp|A2C552|RIMM_PROM1 RecName: Full=Ribosome maturation factor rimM
gi|123961829|gb|ABM76612.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. NATL1A]
Length = 176
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-NRELRILK--M 53
M + DK + + I GL G++ I ++ P R++ +++ E+++ K +
Sbjct: 1 MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
++ + G+ SA E+ KL L +DE+ DL +E R G
Sbjct: 61 IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDS--RPMLSKDEYHYHDLIGLEA--RSG 116
Query: 114 KYWGQVCGVYNF--GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ V + G +LEI+ K L+PF K V E+ ++E +LI+P
Sbjct: 117 PSKALIGYVTDLIKGGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINP 169
>gi|259501564|ref|ZP_05744466.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|302191462|ref|ZP_07267716.1| 16S rRNA-processing protein RimM [Lactobacillus iners AB-1]
gi|325911843|ref|ZP_08174247.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
gi|259167082|gb|EEW51577.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|325476349|gb|EGC79511.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
Length = 173
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GEV + + + P + + Y+ + ++ + + ++
Sbjct: 6 FVGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISAGDQKVKMTVETARFHKQAYLVK 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WGQVCGV 122
F I++I A+ + + LY +D D L + ++ L ++ FD + K G + +
Sbjct: 66 FLQINDIDEANRIVNKNLYVSDEDQTD--LPKGSYYIHQLIGLDVFDYETKRKIGILTDI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA I EI + K F IP V +V+L KI
Sbjct: 124 EMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKI 161
>gi|261401426|ref|ZP_05987551.1| 16S rRNA processing protein RimM [Neisseria lactamica ATCC 23970]
gi|269208560|gb|EEZ75015.1| 16S rRNA processing protein RimM [Neisseria lactamica ATCC 23970]
Length = 169
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
V M I G+ G + I + YA++ +D + L + L+ + N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAADTEYADSLLDYPEWQLVKDGKTVAVSLEGGKVANGELQVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI++ SA LR + R+ F EE E++ DL M D+ G+V +
Sbjct: 68 FEGINDRDSAFSLRGYTIEIPREAFA--PTEEGEYYWADLVGMTVTDKDNTVLGKVSSLM 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L + + LIPF V V+ I+ D
Sbjct: 126 ETGANDVLVVDGEYGQ-ILIPFVSQYVETVDAGSKTIIAD 164
>gi|228477093|ref|ZP_04061731.1| 16S rRNA processing protein RimM [Streptococcus salivarius SK126]
gi|228251112|gb|EEK10283.1| 16S rRNA processing protein RimM [Streptococcus salivarius SK126]
Length = 172
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + VL D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNYIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGD-TLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|300865592|ref|ZP_07110369.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
gi|300336407|emb|CBN55519.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
Length = 210
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 57/207 (27%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA----- 62
V + TI GLNGEV + Y N+ D L R K + F+
Sbjct: 5 VEIGTIVAPQGLNGEVRV--YPNS--DFPERFLEPGQRWMQRPGKAEPEPIEFLGGRYIP 60
Query: 63 -------TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
+G++NI A LR +L+ D LEE EF+ DL ++ F +Q G+
Sbjct: 61 GKGIYAVQLAGVENIDEAEALRGCQLFVSASD--RPHLEEGEFYVRDLIGLQVFYQQTGE 118
Query: 115 YWGQVCGVYNFGAGSILEIK--------NTME---------------------------- 138
G V + G ILE++ N +E
Sbjct: 119 MLGTVVDIIPAG-NDILEVELQQKPEPANILEEESATGQVATHPSQRRSKKQKERPLKSK 177
Query: 139 -KTFLIPFTKFAVLEVNLQENKILIDP 164
KT LIPF + V V + + +I I P
Sbjct: 178 SKTVLIPFVQEIVPIVEIGQRRIEITP 204
>gi|262202022|ref|YP_003273230.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
gi|262085369|gb|ACY21337.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
Length = 172
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GEV +D ++P L + +RE + R
Sbjct: 3 LVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGRMPKGAGDREFTVTAARHHAGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ + + + + +A LR + + + + + DEF++ +LE + G G V
Sbjct: 63 LLSLAEVTDRGAADGLRGVLFLIDSSEAQPSD-DPDEFYDHELEGVPVSTVDGVSVGVVE 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V + G +L ++ + L+PF + V V +I+IDP
Sbjct: 122 SVLHLPGGELLSVRTEDRREVLVPFVRQIVPTVT--REQIVIDP 163
>gi|166364114|ref|YP_001656387.1| 16S rRNA processing protein RimM-like protein [Microcystis
aeruginosa NIES-843]
gi|209573583|sp|B0JU07|RIMM_MICAN RecName: Full=Ribosome maturation factor rimM
gi|166086487|dbj|BAG01195.1| 16S rRNA processing protein RimM homolog [Microcystis aeruginosa
NIES-843]
Length = 192
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVL------YSNDNRELRILK---MYRKNKRF 60
+ TI GL GE+ + S ++ P + + + RE+ +L+ + KN +
Sbjct: 8 IGTIVAPQGLEGELRVLSVSDFPERFQKRGMRGIQGPQGGEIREITLLRGRELPGKNV-Y 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQV 119
+ G++N A LR KL+A + + L+ DE+ ++L +E + G+ G V
Sbjct: 67 VIKLEGVENREQAEALRGYKLWANK--LEKPRLKADEYHVSELVNLEVYHHLTGEKIGVV 124
Query: 120 CGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++ + IL ++ + E L+PF K V V+L+ +I I P
Sbjct: 125 VDIF-WAGNDILAVQLEANLASVKKKSPSSDSEARALVPFVKEIVPLVDLKAARIEIAP 182
>gi|269468481|gb|EEZ80142.1| 16S rRNA processing protein RimM [uncultured SUP05 cluster
bacterium]
Length = 190
Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
K +L+ I G+ G V + S+ N ++ Y + + + L I+K + K +
Sbjct: 28 KRLLVGKINGLFGIQGWVKVFSHTNPRKNILSYQPWHIEVNGQWQTLDIIKGREQGKTLV 87
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A + ++ A + +Y + +L + E++ DL + +++ G+V G
Sbjct: 88 AQIKDVHDMDQARTFIGIDIYINKSQL--PKLNKGEYYWEDLIGLNVINQEKIVLGKVSG 145
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+ S+L + K +P+ + ++ V++ + +I++D
Sbjct: 146 LVDTGSNSVLVVNG--RKEHWVPYIEPFLISVDIDKQQIVVD 185
>gi|304440223|ref|ZP_07400113.1| 16S rRNA processing protein RimM [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371272|gb|EFM24888.1| 16S rRNA processing protein RimM [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 164
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRK 56
+K D+L++ I THG+ G + + + D+NR Y++ D+ ++ I
Sbjct: 1 MKTDQLII-GKILNTHGIKGTIKVQPITS---DINRFKSLNYIIL--DDLKIEISNRRIS 54
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N G D+I+ + +Y D + L+E E+F + + +D +
Sbjct: 55 NNLVYLDLKGYDDINKVLPFKGKYIYILEDDRIN--LKEGEYFQYQVIGLNCYDAENNLL 112
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G V + ILEI++ +PF ++ V+L E I+++PI
Sbjct: 113 GTVKSILENPVHDILEIEDECNTVHYVPFIDNFIVSVDL-EKGIILNPIEG 162
>gi|75481545|sp|Q57L30|RIMM_SALCH RecName: Full=Ribosome maturation factor rimM
gi|62128879|gb|AAX66582.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 183
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y+ + + +++++ N+ I
Sbjct: 15 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYLPWFIQKAGQWQQVQLESWKHHNQDLIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|299532546|ref|ZP_07045936.1| 16S rRNA-processing protein RimM [Comamonas testosteroni S44]
gi|298719493|gb|EFI60460.1| 16S rRNA-processing protein RimM [Comamonas testosteroni S44]
Length = 189
Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 56 KNKRF-----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
K RF +AT + + ++A LR +++ R+ F + E+ EF+ DL + +
Sbjct: 71 KQARFHADTIVATSLEVADRNAAEALRGARVFVAREHFP--KTEDGEFYWVDLMGLNVVN 128
Query: 111 RQGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
R+G G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 129 REGVTLGVVKDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 184
>gi|55821405|ref|YP_139847.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus LMG
18311]
gi|55823330|ref|YP_141771.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus
CNRZ1066]
gi|67461281|sp|Q5LYY1|RIMM_STRT1 RecName: Full=Ribosome maturation factor rimM
gi|67461287|sp|Q5M3J4|RIMM_STRT2 RecName: Full=Ribosome maturation factor rimM
gi|55737390|gb|AAV61032.1| 16S rRNA processing protein [Streptococcus thermophilus LMG 18311]
gi|55739315|gb|AAV62956.1| 16S rRNA processing protein [Streptococcus thermophilus CNRZ1066]
gi|312278733|gb|ADQ63390.1| Ribosome maturation factor rimM [Streptococcus thermophilus ND03]
Length = 172
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + VL D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNYIMDVEVASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGN-TLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|309808810|ref|ZP_07702695.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325913425|ref|ZP_08175791.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|329919878|ref|ZP_08276816.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
gi|308167936|gb|EFO70069.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325477194|gb|EGC80340.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|328936968|gb|EGG33398.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
Length = 173
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GEV + + + P + + Y+ + ++ + + ++
Sbjct: 6 FVGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISAGDQKVKMTVETARFHKQAYLVK 65
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WGQVCGV 122
F I++I A+ + + LY +D D L + ++ L ++ FD + K G + +
Sbjct: 66 FLQINDIDEANRIVNKNLYVSDEDQTD--LPKGSYYIHQLIGLDVFDYETKRKIGILTDI 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA I EI + K F IP V +V+L K+
Sbjct: 124 EMPGANDIWEITPSKGKPFWIPNISSVVKQVDLVNKKV 161
>gi|291278681|ref|YP_003495516.1| 16S rRNA processing protein RimM [Deferribacter desulfuricans SSM1]
gi|290753383|dbj|BAI79760.1| 16S rRNA processing protein RimM [Deferribacter desulfuricans SSM1]
Length = 178
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDN---RELRILKMYRKNKRFIATF 64
+ I +HGL+GEV + P + ++ + + + LR+ + + N+ ++ F
Sbjct: 14 IGIIKNSHGLDGEVKVLPVTEYPELFETLEVLMLAKETEIVKALRVSSVRQHNEFYLIKF 73
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
ID+I +A +L + EL+E+E++ +++ + FD + + G++
Sbjct: 74 ENIDDIETAKKLSGYNIMYPANLLP--ELDENEYYWFEIKGFKVFDMENNFVGELEDYEE 131
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ IK+ E FLI + VL+++ +I+I+
Sbjct: 132 TGSVEAFRIKSENE-YFLISNNPYHVLKIDKINKRIVIN 169
>gi|162139559|ref|YP_217663.2| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715732|gb|EFZ07303.1| Ribosome maturation factor rimM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 182
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y+ + + +++++ N+ I
Sbjct: 14 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYLPWFIQKAGQWQQVQLESWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 177
>gi|325963712|ref|YP_004241618.1| 16S rRNA processing protein RimM [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469799|gb|ADX73484.1| 16S rRNA processing protein RimM [Arthrobacter phenanthrenivorans
Sphe3]
Length = 182
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A IG HG+ GEV + + P D +V+ L ++ + F
Sbjct: 5 VARIGKPHGIRGEVTVQVLTDAPGDRFVPGTEFVVEPASAGPLTVVSARWNKDILLLGFE 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQVCGVYN 124
I + A LR KL+ + ++ +++ ++ ++ +L +E R G G+V +
Sbjct: 65 EIGTRNEAETLRGAKLFIETEELDEDD--DEGWYEHELVGLEA--RVGSNVVGKVAALNT 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
A +L + L+PF + V EVN++E IL+ P A
Sbjct: 121 GTAQDLLMVTTPDGDEILVPFVEQIVPEVNIEEGYILLTPPAG 163
>gi|264677034|ref|YP_003276940.1| 16S rRNA processing protein RimM [Comamonas testosteroni CNB-2]
gi|262207546|gb|ACY31644.1| 16S rRNA processing protein RimM [Comamonas testosteroni CNB-2]
Length = 186
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 56 KNKRF-----IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
K RF +AT + + ++A LR +++ R+ F + E+ EF+ DL + +
Sbjct: 68 KQARFHADTIVATSLEVADRNAAEALRGARVFVAREHFP--KTEDGEFYWVDLMGLNVVN 125
Query: 111 RQGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
R+G G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 126 REGVTLGVVKDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 181
>gi|116628129|ref|YP_820748.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus LMD-9]
gi|122267275|sp|Q03JS0|RIMM_STRTD RecName: Full=Ribosome maturation factor rimM
gi|116101406|gb|ABJ66552.1| 16S rRNA processing protein RimM [Streptococcus thermophilus LMD-9]
Length = 172
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKM----YRKNKRF-IA 62
+ I T GL GE+ + S + + + VL D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFTDERFKKKSVLALFDDKDNYIMDVEVASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGN-TLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|169335119|ref|ZP_02862312.1| hypothetical protein ANASTE_01526 [Anaerofustis stercorihominis DSM
17244]
gi|169257857|gb|EDS71823.1| hypothetical protein ANASTE_01526 [Anaerofustis stercorihominis DSM
17244]
Length = 162
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRFIATF 64
V++ I HG+ GE+ + + D+NR+ + N+E + + I
Sbjct: 5 VVIGKIFNVHGIKGELKVRPLTD---DINRFKILKRCFIKNKEYEVSAARINKDQIILKL 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ + A L++ + R+D LEE E+F DL+ ++ D G + V
Sbjct: 62 KGLDDRNEAEILKNEYVEVLREDSVG--LEEGEYFIEDLKGLKVLDEDDNEIGIMSDVLT 119
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
A I K K ++P K +LE+N+ E
Sbjct: 120 NAAIDIYVFK-IEGKEQMLPALKENILEINIDE 151
>gi|329117617|ref|ZP_08246334.1| 16S rRNA processing protein RimM [Streptococcus parauberis NCFD
2020]
gi|326908022|gb|EGE54936.1| 16S rRNA processing protein RimM [Streptococcus parauberis NCFD
2020]
Length = 172
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S ++ + N L++ ++ ++ +++ +R K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVSDFTEERFQKGNLLALFNEKDQFVKDVEIVNHRIQKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++I+ + + L D L+EDEF+ ++ ++ ++ G V +
Sbjct: 66 KFKDMNHINVVEKFKGYTLKISEDKLTD--LDEDEFYYHEIIGLDVYE-DDVLIGTVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + ++ +K L+P+ +L V+L+EN++ +D I GL++
Sbjct: 123 LQPGANDVWVVQRKGKKDLLLPYIPPVILNVDLEENRVDVD-IMEGLDD 170
>gi|311278434|ref|YP_003940665.1| 16S rRNA processing protein RimM [Enterobacter cloacae SCF1]
gi|308747629|gb|ADO47381.1| 16S rRNA processing protein RimM [Enterobacter cloacae SCF1]
Length = 182
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+ +G+ G + + S A + D + + + L+ +R N+ I
Sbjct: 14 IVLGKMGSCYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQAVELEGWRHHNQDIIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYDLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 177
>gi|116328321|ref|YP_798041.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331047|ref|YP_800765.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|122281203|sp|Q04SW3|RIMM_LEPBJ RecName: Full=Ribosome maturation factor rimM
gi|122283890|sp|Q050Y7|RIMM_LEPBL RecName: Full=Ribosome maturation factor rimM
gi|116121065|gb|ABJ79108.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124736|gb|ABJ76007.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 176
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEM 106
E+ +L++ N +F+ F GI A + L+ + E +DEF+ DL +
Sbjct: 52 EIILLEIRPHNGKFVVRFEGIATPEEAEKWVGGILFLPQNLLPKIE-TKDEFYVRDLIGL 110
Query: 107 ETFDRQGKY--WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI-LID 163
+ D GK W ++ + + A IL + E+ LIPF V E+NL++ I LI
Sbjct: 111 QAIDEFGKSLNW-KLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNLEKKTIVLIQ 169
Query: 164 P 164
P
Sbjct: 170 P 170
>gi|317014535|gb|ADU81971.1| 16S rRNA-processing protein RimM [Helicobacter pylori Gambia94/24]
Length = 184
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMY-------R 55
++L+ IG + GLNG + + ++ P L + V S N LK Y
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSLKDYVIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ ++ K L+E EFF DL + ++ +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEEESKKLCVLKEGEFFYCDLIGLSVVEKN-E 119
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQTDYFMVETTLNLVGKGLAKIFLIPYRDFYIQEILLQDKKI 172
>gi|67924212|ref|ZP_00517652.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
gi|67853931|gb|EAM49250.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
Length = 190
Score = 38.9 bits (89), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKR-----FI 61
+ TI GL GE+ + S + P + + L S N L +++ +I
Sbjct: 11 IGTIVAPKGLRGELKVLSSTDFPERFKNPGKRWLKSPQNASLEPIELISGKPVAGKNIYI 70
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
GI+N + A LR KL D +L E+E+ + L +++ +D+ GK G V
Sbjct: 71 VRLQGIENRNQAENLRGHKLLI--LDETPPKLSEEEYHVSQLIDLDVYDQNTGKMIGNVV 128
Query: 121 GVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+++ G +LEIK + EK +PF V V+L+++KI I+P
Sbjct: 129 DIFSAGH-DLLEIKLITDTETEVKHKKEKKVFVPFVYEIVPVVDLEQHKIEINP 181
>gi|296112616|ref|YP_003626554.1| 16S rRNA processing protein RimM [Moraxella catarrhalis RH4]
gi|295920310|gb|ADG60661.1| 16S rRNA processing protein RimM [Moraxella catarrhalis RH4]
gi|326560876|gb|EGE11241.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 7169]
gi|326563886|gb|EGE14137.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 46P47B1]
gi|326566558|gb|EGE16704.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 12P80B1]
gi|326566895|gb|EGE17034.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 103P14B1]
gi|326569775|gb|EGE19825.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC8]
gi|326570806|gb|EGE20831.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC1]
gi|326571619|gb|EGE21634.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC7]
gi|326575102|gb|EGE25030.1| 16S rRNA processing protein RimM [Moraxella catarrhalis CO72]
gi|326576812|gb|EGE26719.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 101P30B1]
gi|326577735|gb|EGE27611.1| 16S rRNA processing protein RimM [Moraxella catarrhalis O35E]
Length = 185
Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYR-KNKRFI 61
+++ +AT+ +G+ G +++ S + + + + + + + +K +R + + +
Sbjct: 17 EMIKIATLKKPYGIKGWLWVFSQTDERASIFQMQPWWMKTATGFKPLTVKDWRIQGQGLV 76
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F+ + + + A + ++ + +L +DE++ +DL + + Q + G +
Sbjct: 77 ACFNEVPDRNVAETMNGTSIWVCKDHLP--KLADDEYYWSDLIGLTVMNEQAENLGVIKE 134
Query: 122 VYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILI 162
++ GA I+ +K T + + LIP+ VL V+L +L+
Sbjct: 135 MFETGAHEIISLKPTAQSIDNEPRLIPWHSDVVLSVDLSAGTMLV 179
>gi|184155698|ref|YP_001844038.1| 16S rRNA-processing protein RimM [Lactobacillus fermentum IFO 3956]
gi|238692980|sp|B2GD26|RIMM_LACF3 RecName: Full=Ribosome maturation factor rimM
gi|183227042|dbj|BAG27558.1| 16S rRNA processing protein RimM [Lactobacillus fermentum IFO 3956]
Length = 169
Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF 60
+L + I THG+ GEV + D D L D + + ++ R +K
Sbjct: 2 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 61
Query: 61 I-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L QD ELEE +++ + + G+ G++
Sbjct: 62 VLVKFKQFNNINEVQHFRDAELKVADQD--QAELEEGQYYYHQIIGLTAETVDGRVLGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + + L+P V EV+L K++++
Sbjct: 120 KEILAPGANDVWVVDRKQKTDLLLPVIDDVVKEVDLAGGKVIVE 163
>gi|332522194|ref|ZP_08398446.1| 16S rRNA processing protein RimM [Streptococcus porcinus str.
Jelinkova 176]
gi|332313458|gb|EGJ26443.1| 16S rRNA processing protein RimM [Streptococcus porcinus str.
Jelinkova 176]
Length = 172
Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI---LKMYRKNKRF-IA 62
+ I T GL GE+ + S +A+ + ND + + +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVSDFADERFQKGSVLALFNDKNQFVADVEISSHRKQKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F ++I++ + + L D L +DEF+ ++ ++ ++ + + GQV +
Sbjct: 66 KFKDHNHINAIEKYKGFTLKVSENYLSD--LADDEFYYHEIIGLDVYE-ENQLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K +K L+P+ +L V+L+ +++ + I GL++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPSVILNVDLEHHRVDV-VIMEGLDD 170
>gi|255036342|ref|YP_003086963.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
gi|254949098|gb|ACT93798.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
Length = 186
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 9/186 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKM----YRKNKR 59
D L+ I THG G V I + P D +Y EL + +K
Sbjct: 4 DNCYLLGYIVRTHGTAGNVVIYLDVDYPEDYGDLETVYVEIKGELVPYFVDEINLQKQSN 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF ID I A +L LY +D EL EDEF+ +++ + D+ G V
Sbjct: 64 AIVTFEDIDTIEKAQKLVGSSLYMPLEDLA--ELGEDEFYYHEIKGFKVVDQTKGDLGIV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
VY+ ++ + + LIP V++ + +L++ + GL + N
Sbjct: 122 REVYSLNGQDLIAM-DFQGSEVLIPTANDIVIKADKDAKSLLVN-LPEGLLEVYLDNSSD 179
Query: 180 DCPLDS 185
P D+
Sbjct: 180 SIPDDA 185
>gi|227515709|ref|ZP_03945758.1| 16S rRNA processing protein RimM [Lactobacillus fermentum ATCC
14931]
gi|227085957|gb|EEI21269.1| 16S rRNA processing protein RimM [Lactobacillus fermentum ATCC
14931]
Length = 216
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF 60
+L + I THG+ GEV + D D L D + + ++ R +K
Sbjct: 49 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 108
Query: 61 I-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L QD ELEE +++ + + G+ G++
Sbjct: 109 VLVKFKQFNNINEVQHFRDAELKVADQD--QAELEEGQYYYHQIIGLTAETVDGRVLGKI 166
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + + L+P V EV+L K++++
Sbjct: 167 KEILAPGANDVWVVDREQKTDLLLPVIDDVVKEVDLAGGKVIVE 210
>gi|149911443|ref|ZP_01900060.1| 16S rRNA-processing protein [Moritella sp. PE36]
gi|149805474|gb|EDM65481.1| 16S rRNA-processing protein [Moritella sp. PE36]
Length = 168
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRKNKRFIAT 63
+++ +G +G+ G + I+S+ + P + Y + + + E+ + R K IA
Sbjct: 1 MVVGRLGAVYGIKGWMKINSFTDIPEGIFNYSPWLIEQKGEWVEVALEDFKRHGKGLIAK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+GID A L ++ EDEF+ DL +G G+V +
Sbjct: 61 LAGIDIREEAQSLTGAEIAINADQLP---ALEDEFYWRDLIGCSVETDKGYTLGKVTDMM 117
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAV-LEVNLQENKILI--DP 164
G+ +L IK F L+P+ V + V++ KI++ DP
Sbjct: 118 ETGSNDVLVIKANATDAFGKKERLVPYLDGQVIISVDITAQKIIVNWDP 166
>gi|187931090|ref|YP_001891074.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
mediasiatica FSC147]
gi|238691537|sp|B2SFE3|RIMM_FRATM RecName: Full=Ribosome maturation factor rimM
gi|187711999|gb|ACD30296.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 169
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I+N +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANGVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|162448032|ref|YP_001621164.1| 16S rRNA processing protein [Acholeplasma laidlawii PG-8A]
gi|209573539|sp|A9NHF8|RIMM_ACHLI RecName: Full=Ribosome maturation factor rimM
gi|161986139|gb|ABX81788.1| 16S rRNA processing protein [Acholeplasma laidlawii PG-8A]
Length = 159
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNKRFIATFS 65
+ + THG+ GEV I + D +R+V + D + +I + + + +F
Sbjct: 5 IGKVVQTHGIKGEVKIKPHT----DFDRFVKGFDVIIKDTK-YKIQTVREQKDLLLVSFV 59
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G + L+ ++Y + +LE D F L ++ +D+ G V + +
Sbjct: 60 GYPTLTDVEHLKQQEIYTDEEPL---DLESDAFHLPKLIGLKVYDQHNYLIGTVLELVDV 116
Query: 126 GAGSILEI-KNTMEKTFLIPF 145
G +L I ++ KT LIPF
Sbjct: 117 PQGYLLRILRDDNGKTVLIPF 137
>gi|56964055|ref|YP_175786.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
gi|56910298|dbj|BAD64825.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
Length = 190
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 16 THGLNGEVYIDSYANNPID--LNRYVLYSNDNRE----LRILKMYRKNKRF-IATFSGID 68
THG+ GEV + S + P + N VL + + L ++ +R +K F + TF G +
Sbjct: 30 THGVRGEVRVLSNTDFPEERYANGSVLKVAKSPQAEGTLVTVRSHRTHKNFDLLTFEGYN 89
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+I+ + LY EL+E E++ ++ D +G G++ + GA
Sbjct: 90 SINEVECFKGSYLYVSEDQLS--ELDEHEYYYHEIIGCTVVDEEGTKLGKIKDIIETGAN 147
Query: 129 SILEIKNTMEKTFLIPF 145
+ + K L+P+
Sbjct: 148 DVWVVDRQQRKDLLLPY 164
>gi|306831607|ref|ZP_07464765.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306833750|ref|ZP_07466876.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304424087|gb|EFM27227.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304426392|gb|EFM29506.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 182
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKRF-I 61
+ I T GL GE+ + S + + ++ ++ + +R E+ I +RK K F I
Sbjct: 16 VGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIAS-HRKQKNFDI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV
Sbjct: 75 VKFKGMYHINDIEKYKGCTLKVAEENLSD--LDDGEFYYHEIIGLDVYEND-VLIGQVKE 131
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL V++ N+I +D + GL++
Sbjct: 132 ILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDVAGNRIDVD-VLEGLDD 180
>gi|260663079|ref|ZP_05863972.1| 16S rRNA processing protein RimM [Lactobacillus fermentum 28-3-CHN]
gi|260552700|gb|EEX25700.1| 16S rRNA processing protein RimM [Lactobacillus fermentum 28-3-CHN]
Length = 169
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRF 60
+L + I THG+ GEV + D D L D + + ++ R +K
Sbjct: 2 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 61
Query: 61 I-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L QD ELEE +++ + + G+ G++
Sbjct: 62 VLVKFKQFNNINEVQHFRDAELKVADQD--QAELEEGQYYYHQIIGLTAETVDGRVLGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + + L+P V EV+L K++++
Sbjct: 120 KEILAPGANDVWVVDREQKTDLLLPVIDDVVKEVDLAGGKVIVE 163
>gi|89257006|ref|YP_514368.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica LVS]
gi|115315366|ref|YP_764089.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica OSU18]
gi|156503206|ref|YP_001429271.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009386|ref|ZP_02274317.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica FSC200]
gi|254368259|ref|ZP_04984279.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica 257]
gi|254369856|ref|ZP_04985866.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica FSC022]
gi|290954474|ref|ZP_06559095.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica URFT1]
gi|295312079|ref|ZP_06802892.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica URFT1]
gi|109893017|sp|Q2A1N4|RIMM_FRATH RecName: Full=Ribosome maturation factor rimM
gi|122324647|sp|Q0BKD2|RIMM_FRATO RecName: Full=Ribosome maturation factor rimM
gi|166226440|sp|A7NEB2|RIMM_FRATF RecName: Full=Ribosome maturation factor rimM
gi|89144837|emb|CAJ80176.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica LVS]
gi|115130265|gb|ABI83452.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica OSU18]
gi|134254069|gb|EBA53163.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica 257]
gi|156253809|gb|ABU62315.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122815|gb|EDO66944.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica FSC022]
Length = 169
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I+N +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|59798128|sp|Q5WFN5|RIMM_BACSK RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 16 THGLNGEVYIDSYANNPID--LNRYVLYSNDNRE----LRILKMYRKNKRF-IATFSGID 68
THG+ GEV + S + P + N VL + + L ++ +R +K F + TF G +
Sbjct: 13 THGVRGEVRVLSNTDFPEERYANGSVLKVAKSPQAEGTLVTVRSHRTHKNFDLLTFEGYN 72
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+I+ + LY EL+E E++ ++ D +G G++ + GA
Sbjct: 73 SINEVECFKGSYLYVSEDQLS--ELDEHEYYYHEIIGCTVVDEEGTKLGKIKDIIETGAN 130
Query: 129 SILEIKNTMEKTFLIPF 145
+ + K L+P+
Sbjct: 131 DVWVVDRQQRKDLLLPY 147
>gi|158335184|ref|YP_001516356.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
gi|209573538|sp|B0CFM3|RIMM_ACAM1 RecName: Full=Ribosome maturation factor rimM
gi|158305425|gb|ABW27042.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
Length = 192
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYR-----KNKRF 60
+ TI HGLNGEV + ++ P R+++ + +++ R + +
Sbjct: 23 VGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVERKGIY 82
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQV 119
+ + ++ + L+ KL + D L E E++ +DL + D Q + G V
Sbjct: 83 VVKLANVNFRDQSEALKGTKLLVRSNDRP--TLAEGEYYLSDLIGVTVVDHQTQAVVGSV 140
Query: 120 CGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + G +LEI+ + KT L+PF V V++ +I I P
Sbjct: 141 VSLASAG-NDLLEIQLDNTTKTILLPFVSALVPIVDIATKRIEITP 185
>gi|89091992|ref|ZP_01164947.1| putative 16S rRNA processing protein RimM [Oceanospirillum sp.
MED92]
gi|89083727|gb|EAR62944.1| putative 16S rRNA processing protein RimM [Oceanospirillum sp.
MED92]
Length = 177
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +I + +G+ G V I S + ++ Y + + L + + + K IA
Sbjct: 10 LIVGSITSVYGVKGWVKIFSNTDPMENIANYSPWLLKVDGQIKPLEVDSVKKHGKGLIAK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ A + + LEE EF+ + LE + + + G+V +
Sbjct: 70 LVGVDDRDVARNFCGMDILVNADLLP--ALEEGEFYWSQLENLLVYTESDQLLGKVVRLM 127
Query: 124 NFGAGSILEIKNTM----EKTFLIPFTKFAVL-EVNLQENKILID 163
GA +L ++ T +K L+P+ V+ E+NL+ + +D
Sbjct: 128 ETGANDVLVVRGTADSIDQKERLLPYLPDQVIKEINLETGTMRVD 172
>gi|117624830|ref|YP_853743.1| 16S rRNA-processing protein [Escherichia coli APEC O1]
gi|170681223|ref|YP_001744791.1| 16S rRNA-processing protein RimM [Escherichia coli SMS-3-5]
gi|187775815|ref|ZP_02798472.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4196]
gi|189009961|ref|ZP_02803593.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4076]
gi|189402631|ref|ZP_02783684.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4401]
gi|189403179|ref|ZP_02793703.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4486]
gi|189404126|ref|ZP_02787407.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4501]
gi|189405285|ref|ZP_02814517.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC869]
gi|189406162|ref|ZP_02826732.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC508]
gi|191169052|ref|ZP_03030815.1| 16S rRNA processing protein RimM [Escherichia coli B7A]
gi|191174576|ref|ZP_03036071.1| 16S rRNA processing protein RimM [Escherichia coli F11]
gi|193064059|ref|ZP_03045144.1| 16S rRNA processing protein RimM [Escherichia coli E22]
gi|193071700|ref|ZP_03052601.1| 16S rRNA processing protein RimM [Escherichia coli E110019]
gi|194430174|ref|ZP_03062675.1| 16S rRNA processing protein RimM [Escherichia coli B171]
gi|194435112|ref|ZP_03067348.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1012]
gi|194439326|ref|ZP_03071404.1| 16S rRNA processing protein RimM [Escherichia coli 101-1]
gi|208807311|ref|ZP_03249648.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4206]
gi|208812607|ref|ZP_03253936.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4045]
gi|208821784|ref|ZP_03262104.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4042]
gi|209396490|ref|YP_002272079.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4115]
gi|217327249|ref|ZP_03443332.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
TW14588]
gi|227888174|ref|ZP_04005979.1| 16S rRNA-processing protein [Escherichia coli 83972]
gi|261255685|ref|ZP_05948218.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
FRIK966]
gi|291283880|ref|YP_003500698.1| 16S rRNA-processing protein rimM [Escherichia coli O55:H7 str.
CB9615]
gi|300819919|ref|ZP_07100102.1| 16S rRNA processing protein RimM [Escherichia coli MS 107-1]
gi|300825116|ref|ZP_07105209.1| 16S rRNA processing protein RimM [Escherichia coli MS 119-7]
gi|300900206|ref|ZP_07118394.1| 16S rRNA processing protein RimM [Escherichia coli MS 198-1]
gi|300921152|ref|ZP_07137531.1| 16S rRNA processing protein RimM [Escherichia coli MS 115-1]
gi|300925600|ref|ZP_07141470.1| 16S rRNA processing protein RimM [Escherichia coli MS 182-1]
gi|300930667|ref|ZP_07146053.1| 16S rRNA processing protein RimM [Escherichia coli MS 187-1]
gi|300940946|ref|ZP_07155470.1| 16S rRNA processing protein RimM [Escherichia coli MS 21-1]
gi|300949003|ref|ZP_07163056.1| 16S rRNA processing protein RimM [Escherichia coli MS 116-1]
gi|300957392|ref|ZP_07169606.1| 16S rRNA processing protein RimM [Escherichia coli MS 175-1]
gi|300986822|ref|ZP_07177811.1| 16S rRNA processing protein RimM [Escherichia coli MS 45-1]
gi|300990722|ref|ZP_07179307.1| 16S rRNA processing protein RimM [Escherichia coli MS 200-1]
gi|301026376|ref|ZP_07189822.1| 16S rRNA processing protein RimM [Escherichia coli MS 69-1]
gi|301326727|ref|ZP_07220041.1| 16S rRNA processing protein RimM [Escherichia coli MS 78-1]
gi|301644050|ref|ZP_07244066.1| 16S rRNA processing protein RimM [Escherichia coli MS 146-1]
gi|309794119|ref|ZP_07688543.1| 16S rRNA processing protein RimM [Escherichia coli MS 145-7]
gi|331658756|ref|ZP_08359698.1| 16S rRNA processing protein RimM [Escherichia coli TA206]
gi|331669358|ref|ZP_08370204.1| 16S rRNA processing protein RimM [Escherichia coli TA271]
gi|331684264|ref|ZP_08384856.1| 16S rRNA processing protein RimM [Escherichia coli H299]
gi|209573578|sp|B1LPB5|RIMM_ECOSM RecName: Full=Ribosome maturation factor rimM
gi|238058950|sp|B5Z227|RIMM_ECO5E RecName: Full=Ribosome maturation factor rimM
gi|115513954|gb|ABJ02029.1| 16S rRNA processing protein [Escherichia coli APEC O1]
gi|170518941|gb|ACB17119.1| 16S rRNA processing protein RimM [Escherichia coli SMS-3-5]
gi|187770590|gb|EDU34434.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4196]
gi|189003397|gb|EDU72383.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4076]
gi|189354552|gb|EDU72971.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4401]
gi|189362106|gb|EDU80525.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4486]
gi|189367231|gb|EDU85647.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4501]
gi|189370850|gb|EDU89266.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC869]
gi|189376158|gb|EDU94574.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC508]
gi|190900893|gb|EDV60679.1| 16S rRNA processing protein RimM [Escherichia coli B7A]
gi|190905149|gb|EDV64793.1| 16S rRNA processing protein RimM [Escherichia coli F11]
gi|192929294|gb|EDV82903.1| 16S rRNA processing protein RimM [Escherichia coli E22]
gi|192954995|gb|EDV85497.1| 16S rRNA processing protein RimM [Escherichia coli E110019]
gi|194411799|gb|EDX28120.1| 16S rRNA processing protein RimM [Escherichia coli B171]
gi|194416643|gb|EDX32776.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1012]
gi|194421688|gb|EDX37697.1| 16S rRNA processing protein RimM [Escherichia coli 101-1]
gi|208727112|gb|EDZ76713.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4206]
gi|208733884|gb|EDZ82571.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4045]
gi|208741907|gb|EDZ89589.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4042]
gi|209157890|gb|ACI35323.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4115]
gi|217319616|gb|EEC28041.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
TW14588]
gi|227834814|gb|EEJ45280.1| 16S rRNA-processing protein [Escherichia coli 83972]
gi|290763753|gb|ADD57714.1| 16S rRNA-processing protein rimM [Escherichia coli O55:H7 str.
CB9615]
gi|294491107|gb|ADE89863.1| 16S rRNA processing protein RimM [Escherichia coli IHE3034]
gi|300305690|gb|EFJ60210.1| 16S rRNA processing protein RimM [Escherichia coli MS 200-1]
gi|300315827|gb|EFJ65611.1| 16S rRNA processing protein RimM [Escherichia coli MS 175-1]
gi|300356263|gb|EFJ72133.1| 16S rRNA processing protein RimM [Escherichia coli MS 198-1]
gi|300395562|gb|EFJ79100.1| 16S rRNA processing protein RimM [Escherichia coli MS 69-1]
gi|300407874|gb|EFJ91412.1| 16S rRNA processing protein RimM [Escherichia coli MS 45-1]
gi|300411902|gb|EFJ95212.1| 16S rRNA processing protein RimM [Escherichia coli MS 115-1]
gi|300418295|gb|EFK01606.1| 16S rRNA processing protein RimM [Escherichia coli MS 182-1]
gi|300451530|gb|EFK15150.1| 16S rRNA processing protein RimM [Escherichia coli MS 116-1]
gi|300454270|gb|EFK17763.1| 16S rRNA processing protein RimM [Escherichia coli MS 21-1]
gi|300461464|gb|EFK24957.1| 16S rRNA processing protein RimM [Escherichia coli MS 187-1]
gi|300522388|gb|EFK43457.1| 16S rRNA processing protein RimM [Escherichia coli MS 119-7]
gi|300527507|gb|EFK48569.1| 16S rRNA processing protein RimM [Escherichia coli MS 107-1]
gi|300846587|gb|EFK74347.1| 16S rRNA processing protein RimM [Escherichia coli MS 78-1]
gi|301077595|gb|EFK92401.1| 16S rRNA processing protein RimM [Escherichia coli MS 146-1]
gi|308122024|gb|EFO59286.1| 16S rRNA processing protein RimM [Escherichia coli MS 145-7]
gi|315284816|gb|EFU44261.1| 16S rRNA processing protein RimM [Escherichia coli MS 110-3]
gi|315290951|gb|EFU50316.1| 16S rRNA processing protein RimM [Escherichia coli MS 153-1]
gi|315298673|gb|EFU57927.1| 16S rRNA processing protein RimM [Escherichia coli MS 16-3]
gi|320177025|gb|EFW52046.1| 16S rRNA processing protein RimM [Shigella dysenteriae CDC 74-1112]
gi|320182478|gb|EFW57372.1| 16S rRNA processing protein RimM [Shigella boydii ATCC 9905]
gi|320188943|gb|EFW63602.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC1212]
gi|320194772|gb|EFW69401.1| 16S rRNA processing protein RimM [Escherichia coli WV_060327]
gi|320198381|gb|EFW72983.1| 16S rRNA processing protein RimM [Escherichia coli EC4100B]
gi|324005824|gb|EGB75043.1| 16S rRNA processing protein RimM [Escherichia coli MS 57-2]
gi|324012446|gb|EGB81665.1| 16S rRNA processing protein RimM [Escherichia coli MS 60-1]
gi|324016588|gb|EGB85807.1| 16S rRNA processing protein RimM [Escherichia coli MS 117-3]
gi|326344360|gb|EGD68118.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
1125]
gi|326347729|gb|EGD71446.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
1044]
gi|330912371|gb|EGH40881.1| 16S rRNA processing protein RimM [Escherichia coli AA86]
gi|331053338|gb|EGI25367.1| 16S rRNA processing protein RimM [Escherichia coli TA206]
gi|331063026|gb|EGI34939.1| 16S rRNA processing protein RimM [Escherichia coli TA271]
gi|331077879|gb|EGI49085.1| 16S rRNA processing protein RimM [Escherichia coli H299]
Length = 183
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 178
>gi|288905522|ref|YP_003430744.1| 16S rRNA-processing protein [Streptococcus gallolyticus UCN34]
gi|325978512|ref|YP_004288228.1| ribosome maturation factor rimM [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732248|emb|CBI13815.1| putative 16S rRNA-processing protein [Streptococcus gallolyticus
UCN34]
gi|325178440|emb|CBZ48484.1| Ribosome maturation factor rimM [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 172
Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKRF-I 61
+ I T GL GE+ + S + + ++ ++ + +R E+ I +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIAS-HRKQKNFDI 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV
Sbjct: 65 VKFKGMYHINDIEKYKGCTLKVAEENLSD--LDDGEFYYHEIIGLDVYEND-VLIGQVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL V++ N+I +D + GL++
Sbjct: 122 ILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDVAGNRIDVD-VLEGLDD 170
>gi|91211942|ref|YP_541928.1| 16S rRNA-processing protein RimM [Escherichia coli UTI89]
gi|237706804|ref|ZP_04537285.1| 16S rRNA-processing protein [Escherichia sp. 3_2_53FAA]
gi|254037684|ref|ZP_04871742.1| ribosome maturation factor rimM [Escherichia sp. 1_1_43]
gi|293411997|ref|ZP_06654720.1| 16S rRNA processing protein RimM [Escherichia coli B354]
gi|293415879|ref|ZP_06658519.1| 16S rRNA processing protein RimM [Escherichia coli B185]
gi|293448958|ref|ZP_06663379.1| 16S rRNA processing protein RimM [Escherichia coli B088]
gi|331643324|ref|ZP_08344455.1| 16S rRNA processing protein RimM [Escherichia coli H736]
gi|331648350|ref|ZP_08349438.1| 16S rRNA processing protein RimM [Escherichia coli M605]
gi|331654065|ref|ZP_08355065.1| 16S rRNA processing protein RimM [Escherichia coli M718]
gi|331674049|ref|ZP_08374811.1| 16S rRNA processing protein RimM [Escherichia coli TA280]
gi|331678599|ref|ZP_08379273.1| 16S rRNA processing protein RimM [Escherichia coli H591]
gi|332280697|ref|ZP_08393110.1| ribosome maturation factor rimM [Shigella sp. D9]
gi|109893048|sp|Q31XD7|RIMM_SHIBS RecName: Full=Ribosome maturation factor rimM
gi|109893049|sp|Q32CY0|RIMM_SHIDS RecName: Full=Ribosome maturation factor rimM
gi|109893050|sp|Q3YYN0|RIMM_SHISS RecName: Full=Ribosome maturation factor rimM
gi|25364897|pir||G91062 hypothetical protein ECs3471 [imported] - Escherichia coli (strain
O157:H7, substrain RIMD 0509952)
gi|25364899|pir||C85907 hypothetical protein yfjA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517030|gb|AAG57719.1|AE005490_14 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109377|gb|AAN81579.1|AE016764_261 16S rRNA processing protein rimM [Escherichia coli CFT073]
gi|13362942|dbj|BAB36894.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856675|gb|AAZ89382.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242115|gb|ABB62825.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246563|gb|ABB67271.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073516|gb|ABE08397.1| 16S rRNA processing protein RimM [Escherichia coli UTI89]
gi|209762548|gb|ACI79586.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762550|gb|ACI79587.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762552|gb|ACI79588.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762554|gb|ACI79589.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762556|gb|ACI79590.1| hypothetical protein ECs3471 [Escherichia coli]
gi|226839308|gb|EEH71329.1| ribosome maturation factor rimM [Escherichia sp. 1_1_43]
gi|226899844|gb|EEH86103.1| 16S rRNA-processing protein [Escherichia sp. 3_2_53FAA]
gi|291322048|gb|EFE61477.1| 16S rRNA processing protein RimM [Escherichia coli B088]
gi|291432068|gb|EFF05050.1| 16S rRNA processing protein RimM [Escherichia coli B185]
gi|291468768|gb|EFF11259.1| 16S rRNA processing protein RimM [Escherichia coli B354]
gi|323935678|gb|EGB31995.1| 16S rRNA processing protein RimM [Escherichia coli E1520]
gi|323941374|gb|EGB37558.1| 16S rRNA processing protein RimM [Escherichia coli E482]
gi|323946265|gb|EGB42298.1| 16S rRNA processing protein RimM [Escherichia coli H120]
gi|323951193|gb|EGB47069.1| 16S rRNA processing protein RimM [Escherichia coli H252]
gi|323957025|gb|EGB52751.1| 16S rRNA processing protein RimM [Escherichia coli H263]
gi|323960534|gb|EGB56163.1| 16S rRNA processing protein RimM [Escherichia coli H489]
gi|323963917|gb|EGB59410.1| 16S rRNA processing protein RimM [Escherichia coli M863]
gi|323971449|gb|EGB66685.1| 16S rRNA processing protein RimM [Escherichia coli TA007]
gi|323978483|gb|EGB73566.1| 16S rRNA processing protein RimM [Escherichia coli TW10509]
gi|324111244|gb|EGC05226.1| 16S rRNA processing protein RimM [Escherichia fergusonii B253]
gi|324120065|gb|EGC13941.1| 16S rRNA processing protein RimM [Escherichia coli E1167]
gi|331036795|gb|EGI09019.1| 16S rRNA processing protein RimM [Escherichia coli H736]
gi|331042097|gb|EGI14239.1| 16S rRNA processing protein RimM [Escherichia coli M605]
gi|331047447|gb|EGI19524.1| 16S rRNA processing protein RimM [Escherichia coli M718]
gi|331068788|gb|EGI40181.1| 16S rRNA processing protein RimM [Escherichia coli TA280]
gi|331073429|gb|EGI44750.1| 16S rRNA processing protein RimM [Escherichia coli H591]
gi|332103049|gb|EGJ06395.1| ribosome maturation factor rimM [Shigella sp. D9]
Length = 185
Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 17 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 77 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 135 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 180
>gi|270264056|ref|ZP_06192324.1| 16S rRNA processing protein RimM [Serratia odorifera 4Rx13]
gi|270042249|gb|EFA15345.1| 16S rRNA processing protein RimM [Serratia odorifera 4Rx13]
Length = 182
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
+++ +G+T+G+ G + + S N D + + +L L+ ++++ + I
Sbjct: 14 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQWQLVELEDWKRHSQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ + ELE D+++ DL + G G+V +
Sbjct: 74 VKGVDDRDAANLLTNREIVVDSEQLP--ELEGDDYYWKDLMGCQVVTTTGYELGKVVDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE 152
G+ ++ +K ++ F L+PF V++
Sbjct: 132 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIK 165
>gi|120555193|ref|YP_959544.1| 16S rRNA-processing protein RimM [Marinobacter aquaeolei VT8]
gi|171769205|sp|A1U2Y8|RIMM_MARAV RecName: Full=Ribosome maturation factor rimM
gi|120325042|gb|ABM19357.1| 16S rRNA processing protein RimM [Marinobacter aquaeolei VT8]
gi|302608134|emb|CBW44416.1| 16S rRNA processing protein [Marinobacter hydrocarbonoclasticus]
Length = 175
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIATF 64
++ I + G+ G + + SY + + Y +L +R+ + R+ + +
Sbjct: 9 VIGRITSVFGVKGWLKVFSYTDPKDGILNYRDWTLLLDGKRIPIRLEEGRRQGQGIVVRL 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID+ A ++ + EL E EF+ LE ++ F +G+ G+V +
Sbjct: 69 KGIDDREVARTYCGAEIRVPTEQLP--ELPEGEFYWHQLEGLDVFTVEGECLGKVHHLLE 126
Query: 125 FGAGSILEIKNTM----EKTFLIPFTKFAVL-EVNLQENKILID 163
G+ +L + T ++ LIP+ V+ +V+L+ +++++D
Sbjct: 127 TGSNDVLVVHATAGSIDQRERLIPYLPDQVVQQVDLKGSRMVVD 170
>gi|300905072|ref|ZP_07122881.1| 16S rRNA processing protein RimM [Escherichia coli MS 84-1]
gi|301305747|ref|ZP_07211834.1| 16S rRNA processing protein RimM [Escherichia coli MS 124-1]
gi|300403023|gb|EFJ86561.1| 16S rRNA processing protein RimM [Escherichia coli MS 84-1]
gi|300839001|gb|EFK66761.1| 16S rRNA processing protein RimM [Escherichia coli MS 124-1]
gi|315253135|gb|EFU33103.1| 16S rRNA processing protein RimM [Escherichia coli MS 85-1]
Length = 183
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ K +LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSS--KLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 178
>gi|156932850|ref|YP_001436766.1| 16S rRNA-processing protein RimM [Cronobacter sakazakii ATCC
BAA-894]
gi|166226439|sp|A7MEG3|RIMM_ENTS8 RecName: Full=Ribosome maturation factor rimM
gi|156531104|gb|ABU75930.1| hypothetical protein ESA_00647 [Cronobacter sakazakii ATCC BAA-894]
Length = 183
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D + + + L+ ++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ D LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLPD--LEEGDYYWKDLIGCQVVTTEGYSLGKVIDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVVKANLKDAFGIKERLLPFLDGQVIKKVDLATQTIEVD 178
>gi|402166|emb|CAA52886.1| 21kD protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 183
Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V++ +G+++G+ G + + S A + D + + + L+ ++K N+ I
Sbjct: 14 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKKHHNQDLII 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 74 KLKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDM 131
Query: 123 YNFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|154174403|ref|YP_001408554.1| 16S rRNA processing protein RimM [Campylobacter curvus 525.92]
gi|171769257|sp|A7GZB2|RIMM_CAMC5 RecName: Full=Ribosome maturation factor rimM
gi|112803066|gb|EAU00410.1| 16S rRNA processing protein RimM [Campylobacter curvus 525.92]
Length = 176
Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIATF 64
+ V +A IG GL G V + + + P + V + D E I+K Y +K A F
Sbjct: 4 EFVEVAIIGRCVGLKGCVKLHNKGDFPEQFKKNAVFFDKDGNEF-IIKSYDVSKE-TALF 61
Query: 65 SGIDNIHSASELRDLKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G ++I A L + LY ++ K+ +L+E EFF D+ + + G+ G V +
Sbjct: 62 EGYEDIDLAKSLVNKILYTTKELTRKNCKLKEGEFFYFDVLGLNIVE-NGEILGVVKDIE 120
Query: 124 NFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ ++L +K + K F +P+ V+ V+L+ +IL + L N+
Sbjct: 121 DNLNNALLYVKTSDDLVSIGFAKNFYVPYIDRFVISVSLENKEILTKDAKSILENS 176
>gi|332525243|ref|ZP_08401416.1| 16S rRNA-processing protein RimM [Rubrivivax benzoatilyticus JA2]
gi|332108525|gb|EGJ09749.1| 16S rRNA-processing protein RimM [Rubrivivax benzoatilyticus JA2]
Length = 191
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 18 GLNGEVYIDSYANNPIDL---NRYVLYSNDNRE-------LRILKMYRKNKRFIATFSGI 67
G+ G + + ++++P L R+ L ++ + LR+ + +AT +
Sbjct: 31 GVKGGIKVKPFSSDPQALFSSKRWFLEPSEAKPGHQVPPLLRVASAREQGDAVVATIHDL 90
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ A L +++ R F + EDEF+ DL ++ +R G+V G+ G
Sbjct: 91 TDRDLAQALAGARIFIARSSFPTPD--EDEFYWVDLIGLDARNRADVVLGRVVGLVETGP 148
Query: 128 GSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILID 163
+L ++ EK LIPF V V+L + +D
Sbjct: 149 HCVLRVQPADEKADEILIPFVAAYVDRVDLAGATVHVD 186
>gi|320546970|ref|ZP_08041271.1| 16S rRNA processing protein RimM [Streptococcus equinus ATCC 9812]
gi|320448372|gb|EFW89114.1| 16S rRNA processing protein RimM [Streptococcus equinus ATCC 9812]
Length = 172
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + ++ ++ + +R L +++ +RK K F I
Sbjct: 6 VGRIVNTQGLQGEMRVLSVTDFAEERFKKGSKLAVFDDKDRFLLDVEIASHRKQKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ ELE+ EF+ ++ ++ ++ GQ+ +
Sbjct: 66 KFKGMYHINDIEKYKGCSLKVAEENLS--ELEDGEFYYHEIIGLDVYEND-VLIGQIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ +L V++ N++ +D + GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVAGNRVDVD-VLEGLDD 170
>gi|123969347|ref|YP_001010205.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
AS9601]
gi|166226465|sp|A2BTI7|RIMM_PROMS RecName: Full=Ribosome maturation factor rimM
gi|123199457|gb|ABM71098.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. AS9601]
Length = 179
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 20/178 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---------SNDNRELRIL 51
M+ ++ +++ I + HG+NG++ + S + D L S ++ ++
Sbjct: 1 MIIKNEWLIVGFITSCHGINGQLKVKSLS----DFEERFLKPGMRWLQKESEHPSKIELI 56
Query: 52 KMYRKNKR--FIATFSGIDNIHSASELRDLKLYAKR---QDFKDEELEEDEFFNTDLEEM 106
+++ + FI F GI+ + A +L+ KL K K EE E + +++ +
Sbjct: 57 SGFKQPGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTL 116
Query: 107 ETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
E + + K G+V + N ++ +K LIPF K V V+++ N ++I+P
Sbjct: 117 E--NDELKIIGKVINLENEKNNLLIIELFKNQKKVLIPFVKEIVPLVDIKNNFLIINP 172
>gi|319946982|ref|ZP_08021216.1| 16S rRNA processing protein RimM [Streptococcus australis ATCC
700641]
gi|319747030|gb|EFV99289.1| 16S rRNA processing protein RimM [Streptococcus australis ATCC
700641]
Length = 172
Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK+K F I F + +I++ + + L D D L+E EF+ ++ ++ ++
Sbjct: 56 HRKHKNFDIIKFKDMYHINAIEKFKGFSLKVAEGDLTD--LDEGEFYYHEIIGLDVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ VL +++ N++ +D I GL++
Sbjct: 114 -NLIGQIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLSIDIPGNRVDVD-ILEGLDD 170
>gi|30064007|ref|NP_838178.1| 16S rRNA-processing protein RimM [Shigella flexneri 2a str. 2457T]
gi|56480152|ref|NP_708456.2| 16S rRNA-processing protein RimM [Shigella flexneri 2a str. 301]
gi|89109409|ref|AP_003189.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
W3110]
gi|90111466|ref|NP_417099.4| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
MG1655]
gi|110642769|ref|YP_670499.1| 16S rRNA-processing protein RimM [Escherichia coli 536]
gi|110806724|ref|YP_690244.1| 16S rRNA-processing protein RimM [Shigella flexneri 5 str. 8401]
gi|157154813|ref|YP_001463927.1| 16S rRNA-processing protein RimM [Escherichia coli E24377A]
gi|157162084|ref|YP_001459402.1| 16S rRNA-processing protein RimM [Escherichia coli HS]
gi|161367544|ref|NP_289161.2| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 EDL933]
gi|161486146|ref|NP_755011.2| 16S rRNA-processing protein RimM [Escherichia coli CFT073]
gi|161950061|ref|YP_404316.2| 16S rRNA-processing protein RimM [Shigella dysenteriae Sd197]
gi|161984877|ref|YP_409099.2| 16S rRNA-processing protein RimM [Shigella boydii Sb227]
gi|161986471|ref|YP_311617.2| 16S rRNA-processing protein RimM [Shigella sonnei Ss046]
gi|162139719|ref|NP_311498.3| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
Sakai]
gi|170019115|ref|YP_001724069.1| 16S rRNA-processing protein RimM [Escherichia coli ATCC 8739]
gi|170082212|ref|YP_001731532.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
DH10B]
gi|188495797|ref|ZP_03003067.1| 16S rRNA processing protein RimM [Escherichia coli 53638]
gi|195940202|ref|ZP_03085584.1| 16S rRNA-processing protein [Escherichia coli O157:H7 str. EC4024]
gi|209920083|ref|YP_002294167.1| 16S rRNA-processing protein RimM [Escherichia coli SE11]
gi|215487958|ref|YP_002330389.1| 16S rRNA-processing protein RimM [Escherichia coli O127:H6 str.
E2348/69]
gi|218555187|ref|YP_002388100.1| 16S rRNA-processing protein RimM [Escherichia coli IAI1]
gi|218559528|ref|YP_002392441.1| 16S rRNA-processing protein RimM [Escherichia coli S88]
gi|218690726|ref|YP_002398938.1| 16S rRNA-processing protein RimM [Escherichia coli ED1a]
gi|218696232|ref|YP_002403899.1| 16S rRNA-processing protein RimM [Escherichia coli 55989]
gi|218701120|ref|YP_002408749.1| 16S rRNA-processing protein RimM [Escherichia coli IAI39]
gi|218706109|ref|YP_002413628.1| 16S rRNA-processing protein RimM [Escherichia coli UMN026]
gi|238901768|ref|YP_002927564.1| 16S rRNA processing protein [Escherichia coli BW2952]
gi|253772498|ref|YP_003035329.1| 16S rRNA-processing protein RimM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162578|ref|YP_003045686.1| 16S rRNA-processing protein RimM [Escherichia coli B str. REL606]
gi|254794554|ref|YP_003079391.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
TW14359]
gi|256019573|ref|ZP_05433438.1| 16S rRNA-processing protein RimM [Shigella sp. D9]
gi|256024865|ref|ZP_05438730.1| 16S rRNA-processing protein RimM [Escherichia sp. 4_1_40B]
gi|260845289|ref|YP_003223067.1| 16S rRNA processing protein [Escherichia coli O103:H2 str. 12009]
gi|260856697|ref|YP_003230588.1| 16S rRNA processing protein [Escherichia coli O26:H11 str. 11368]
gi|260869289|ref|YP_003235691.1| 16S rRNA processing protein [Escherichia coli O111:H- str. 11128]
gi|261227491|ref|ZP_05941772.1| 16S rRNA processing protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|293406115|ref|ZP_06650041.1| ribosome maturation factor rimM [Escherichia coli FVEC1412]
gi|297517104|ref|ZP_06935490.1| 16S rRNA-processing protein RimM [Escherichia coli OP50]
gi|298381848|ref|ZP_06991445.1| ribosome maturation factor rimM [Escherichia coli FVEC1302]
gi|306812474|ref|ZP_07446672.1| 16S rRNA-processing protein RimM [Escherichia coli NC101]
gi|307139329|ref|ZP_07498685.1| 16S rRNA-processing protein RimM [Escherichia coli H736]
gi|307315080|ref|ZP_07594664.1| 16S rRNA processing protein RimM [Escherichia coli W]
gi|309784648|ref|ZP_07679283.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1617]
gi|312965539|ref|ZP_07779770.1| 16S rRNA processing protein RimM [Escherichia coli 2362-75]
gi|312973150|ref|ZP_07787323.1| 16S rRNA processing protein RimM [Escherichia coli 1827-70]
gi|67472030|sp|P0A7X6|RIMM_ECOLI RecName: Full=Ribosome maturation factor rimM; AltName: Full=21K
gi|67472031|sp|P0A7X7|RIMM_ECOL6 RecName: Full=Ribosome maturation factor rimM
gi|67472032|sp|P0A7X8|RIMM_ECO57 RecName: Full=Ribosome maturation factor rimM
gi|67472033|sp|P0A7X9|RIMM_SHIFL RecName: Full=Ribosome maturation factor rimM
gi|122957241|sp|Q0T176|RIMM_SHIF8 RecName: Full=Ribosome maturation factor rimM
gi|123343733|sp|Q0TEN1|RIMM_ECOL5 RecName: Full=Ribosome maturation factor rimM
gi|166985944|sp|A7ZQ48|RIMM_ECO24 RecName: Full=Ribosome maturation factor rimM
gi|166985955|sp|A8A3B5|RIMM_ECOHS RecName: Full=Ribosome maturation factor rimM
gi|171704424|sp|A1AED9|RIMM_ECOK1 RecName: Full=Ribosome maturation factor rimM
gi|189040838|sp|B1IVM5|RIMM_ECOLC RecName: Full=Ribosome maturation factor rimM
gi|209573742|sp|Q1R8B7|RIMM_ECOUT RecName: Full=Ribosome maturation factor rimM
gi|226694912|sp|B7MIU6|RIMM_ECO45 RecName: Full=Ribosome maturation factor rimM
gi|226694913|sp|B7NSA7|RIMM_ECO7I RecName: Full=Ribosome maturation factor rimM
gi|226734087|sp|B7M977|RIMM_ECO8A RecName: Full=Ribosome maturation factor rimM
gi|226734088|sp|B7N6J4|RIMM_ECOLU RecName: Full=Ribosome maturation factor rimM
gi|229564321|sp|B1XBT0|RIMM_ECODH RecName: Full=Ribosome maturation factor rimM
gi|238058951|sp|B6I630|RIMM_ECOSE RecName: Full=Ribosome maturation factor rimM
gi|254797747|sp|B7UH57|RIMM_ECO27 RecName: Full=Ribosome maturation factor rimM
gi|254797748|sp|B7LDJ7|RIMM_ECO55 RecName: Full=Ribosome maturation factor rimM
gi|254797749|sp|B7MYA1|RIMM_ECO81 RecName: Full=Ribosome maturation factor rimM
gi|259585643|sp|C4ZYM6|RIMM_ECOBW RecName: Full=Ribosome maturation factor rimM
gi|30042263|gb|AAP17988.1| hypothetical protein S2845 [Shigella flexneri 2a str. 2457T]
gi|56383703|gb|AAN44163.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|85675479|dbj|BAA16493.2| 16S rRNA processing protein [Escherichia coli str. K12 substr.
W3110]
gi|87082136|gb|AAC75657.2| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
MG1655]
gi|110344361|gb|ABG70598.1| 16S rRNA processing protein RimM [Escherichia coli 536]
gi|110616272|gb|ABF04939.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157067764|gb|ABV07019.1| 16S rRNA processing protein RimM [Escherichia coli HS]
gi|157076843|gb|ABV16551.1| 16S rRNA processing protein RimM [Escherichia coli E24377A]
gi|169754043|gb|ACA76742.1| 16S rRNA processing protein RimM [Escherichia coli ATCC 8739]
gi|169890047|gb|ACB03754.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
DH10B]
gi|188490996|gb|EDU66099.1| 16S rRNA processing protein RimM [Escherichia coli 53638]
gi|209913342|dbj|BAG78416.1| 16S rRNA processing protein [Escherichia coli SE11]
gi|215266030|emb|CAS10445.1| 16S rRNA processing protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218352964|emb|CAU98764.1| 16S rRNA processing protein [Escherichia coli 55989]
gi|218361955|emb|CAQ99556.1| 16S rRNA processing protein [Escherichia coli IAI1]
gi|218366297|emb|CAR04048.1| 16S rRNA processing protein [Escherichia coli S88]
gi|218371106|emb|CAR18934.1| 16S rRNA processing protein [Escherichia coli IAI39]
gi|218428290|emb|CAR09067.1| 16S rRNA processing protein [Escherichia coli ED1a]
gi|218433206|emb|CAR14104.1| 16S rRNA processing protein [Escherichia coli UMN026]
gi|222034310|emb|CAP77051.1| 16S rRNA-processing protein rimM [Escherichia coli LF82]
gi|238859735|gb|ACR61733.1| 16S rRNA processing protein [Escherichia coli BW2952]
gi|242378203|emb|CAQ32978.1| ribosome maturation protein [Escherichia coli BL21(DE3)]
gi|253323542|gb|ACT28144.1| 16S rRNA processing protein RimM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974479|gb|ACT40150.1| 16S rRNA-processing protein [Escherichia coli B str. REL606]
gi|253978646|gb|ACT44316.1| 16S rRNA-processing protein [Escherichia coli BL21(DE3)]
gi|254593954|gb|ACT73315.1| 16S rRNA processing protein [Escherichia coli O157:H7 str. TW14359]
gi|257755346|dbj|BAI26848.1| 16S rRNA processing protein [Escherichia coli O26:H11 str. 11368]
gi|257760436|dbj|BAI31933.1| 16S rRNA processing protein [Escherichia coli O103:H2 str. 12009]
gi|257765645|dbj|BAI37140.1| 16S rRNA processing protein [Escherichia coli O111:H- str. 11128]
gi|260448318|gb|ACX38740.1| 16S rRNA processing protein RimM [Escherichia coli DH1]
gi|281179654|dbj|BAI55984.1| 16S rRNA processing protein [Escherichia coli SE15]
gi|284922554|emb|CBG35641.1| 16S rRNA processing protein [Escherichia coli 042]
gi|291426121|gb|EFE99153.1| ribosome maturation factor rimM [Escherichia coli FVEC1412]
gi|298276988|gb|EFI18504.1| ribosome maturation factor rimM [Escherichia coli FVEC1302]
gi|305854512|gb|EFM54950.1| 16S rRNA-processing protein RimM [Escherichia coli NC101]
gi|306905509|gb|EFN36043.1| 16S rRNA processing protein RimM [Escherichia coli W]
gi|307554621|gb|ADN47396.1| 16S rRNA processing protein [Escherichia coli ABU 83972]
gi|307625842|gb|ADN70146.1| 16S rRNA-processing protein RimM [Escherichia coli UM146]
gi|308927545|gb|EFP73017.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1617]
gi|309702988|emb|CBJ02319.1| 16S rRNA processing protein [Escherichia coli ETEC H10407]
gi|310333092|gb|EFQ00306.1| 16S rRNA processing protein RimM [Escherichia coli 1827-70]
gi|312289787|gb|EFR17676.1| 16S rRNA processing protein RimM [Escherichia coli 2362-75]
gi|312947180|gb|ADR28007.1| 16S rRNA-processing protein RimM [Escherichia coli O83:H1 str. NRG
857C]
gi|313648286|gb|EFS12730.1| 16S rRNA processing protein RimM [Shigella flexneri 2a str. 2457T]
gi|315061922|gb|ADT76249.1| 16S rRNA processing protein [Escherichia coli W]
gi|315137226|dbj|BAJ44385.1| 16S rRNA processing protein RimM [Escherichia coli DH1]
gi|315615306|gb|EFU95941.1| 16S rRNA processing protein RimM [Escherichia coli 3431]
gi|320640790|gb|EFX10288.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
G5101]
gi|320646135|gb|EFX15080.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H- str.
493-89]
gi|320651432|gb|EFX19833.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H- str. H
2687]
gi|320657037|gb|EFX24860.1| 16S rRNA-processing protein RimM [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662701|gb|EFX30045.1| 16S rRNA-processing protein RimM [Escherichia coli O55:H7 str. USDA
5905]
gi|320667518|gb|EFX34442.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
LSU-61]
gi|323156262|gb|EFZ42421.1| 16S rRNA processing protein RimM [Escherichia coli EPECa14]
gi|323159127|gb|EFZ45120.1| 16S rRNA processing protein RimM [Escherichia coli E128010]
gi|323167731|gb|EFZ53426.1| 16S rRNA processing protein RimM [Shigella sonnei 53G]
gi|323173075|gb|EFZ58706.1| 16S rRNA processing protein RimM [Escherichia coli LT-68]
gi|323177266|gb|EFZ62854.1| 16S rRNA processing protein RimM [Escherichia coli 1180]
gi|323184517|gb|EFZ69891.1| 16S rRNA processing protein RimM [Escherichia coli 1357]
gi|323188400|gb|EFZ73689.1| 16S rRNA processing protein RimM [Escherichia coli RN587/1]
gi|323377498|gb|ADX49766.1| 16S rRNA processing protein RimM [Escherichia coli KO11]
gi|332088116|gb|EGI93241.1| 16S rRNA processing protein RimM [Shigella boydii 5216-82]
gi|332089239|gb|EGI94346.1| 16S rRNA processing protein RimM [Shigella dysenteriae 155-74]
gi|332344477|gb|AEE57811.1| 16S rRNA processing protein RimM [Escherichia coli UMNK88]
gi|332754032|gb|EGJ84404.1| 16S rRNA processing protein RimM [Shigella flexneri K-671]
gi|332755633|gb|EGJ85996.1| 16S rRNA processing protein RimM [Shigella flexneri 2747-71]
gi|332765586|gb|EGJ95799.1| 16S rRNA processing protein RimM [Shigella flexneri 2930-71]
gi|332999383|gb|EGK18968.1| 16S rRNA processing protein RimM [Shigella flexneri VA-6]
gi|333000792|gb|EGK20366.1| 16S rRNA processing protein RimM [Shigella flexneri K-218]
gi|333000980|gb|EGK20550.1| 16S rRNA processing protein RimM [Shigella flexneri K-272]
gi|333015516|gb|EGK34855.1| 16S rRNA processing protein RimM [Shigella flexneri K-227]
gi|333015852|gb|EGK35188.1| 16S rRNA processing protein RimM [Shigella flexneri K-304]
Length = 182
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177
>gi|325496324|gb|EGC94183.1| 16S rRNA-processing protein RimM [Escherichia fergusonii ECD227]
Length = 185
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 17 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 77 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVIDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 135 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 180
>gi|301167137|emb|CBW26716.1| 16S rRNA processing protein [Bacteriovorax marinus SJ]
Length = 180
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWG 117
+ I + + + +L + R DF L+EDEF+ +DL ++ + + + +G
Sbjct: 68 KVITYLEEVTDRNKVEDLIPFNISVSRDDFPS--LDEDEFYLSDLVGLDVLEEESMEPYG 125
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+V Y+ A +L +K + ++ +PF + +N++EN I TMK P
Sbjct: 126 KVSDFYDNTAQVVLVVKGSGKRVLELPFIEEFFPTINIEENYI------------TMKIP 173
Query: 178 QY 179
Y
Sbjct: 174 DY 175
>gi|218680101|ref|ZP_03527998.1| 16S rRNA-processing protein [Rhizobium etli CIAT 894]
Length = 48
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 142 LIPFTKFAVLEVNLQENKILIDPIAAGL 169
LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 2 LIPFSEASVLEIDLEAGTLLIDPLAAGL 29
>gi|301050478|ref|ZP_07197357.1| 16S rRNA processing protein RimM [Escherichia coli MS 185-1]
gi|300297825|gb|EFJ54210.1| 16S rRNA processing protein RimM [Escherichia coli MS 185-1]
Length = 183
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 178
>gi|187730041|ref|YP_001881398.1| 16S rRNA-processing protein RimM [Shigella boydii CDC 3083-94]
gi|218547873|ref|YP_002381664.1| 16S rRNA-processing protein RimM [Escherichia fergusonii ATCC
35469]
gi|226734089|sp|B7LUW5|RIMM_ESCF3 RecName: Full=Ribosome maturation factor rimM
gi|238691732|sp|B2TYN0|RIMM_SHIB3 RecName: Full=Ribosome maturation factor rimM
gi|187427033|gb|ACD06307.1| 16S rRNA processing protein RimM [Shigella boydii CDC 3083-94]
gi|218355414|emb|CAQ88023.1| 16S rRNA processing protein [Escherichia fergusonii ATCC 35469]
Length = 182
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177
>gi|183597520|ref|ZP_02959013.1| hypothetical protein PROSTU_00794 [Providencia stuartii ATCC 25827]
gi|188023166|gb|EDU61206.1| hypothetical protein PROSTU_00794 [Providencia stuartii ATCC 25827]
Length = 182
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLY-SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S +A + D + + S + + + NK I
Sbjct: 14 IVLGKLGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRSGQWQHIELEDWKHHNKDIILK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ EL+ +E++ DL + QG G + +
Sbjct: 74 LKGVDDRDAATLLTNFEIVVDSAQLP--ELDNNEYYWKDLMGCQVVTLQGYNLGTITDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L+ I +D
Sbjct: 132 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLKSKLIEVD 177
>gi|253573495|ref|ZP_04850838.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847023|gb|EES75028.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
Length = 172
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP----IDLNRYVLY---SNDNRELRILKMYRKN 57
D L+ + I THG+ GE+ + + P +R ++ + + E+ +
Sbjct: 3 DSLLTVGKIVNTHGIRGELRVLLQTDFPEVRFAPKSRLLIVHPETGERLEVTVQSARPYK 62
Query: 58 KRFIATFSGIDNIHSASEL--RDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +I F NI+ RDLK+ +K + EL E+E++ ++ +G+
Sbjct: 63 QMYIVKFVEFSNINDVERFKGRDLKV-SKAESV---ELPENEYYFHEIIGCRVVSDEGEE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G++ + GA + K K L+P VL+VN++E I +
Sbjct: 119 LGEIVEILRPGANDVWVAKLPNGKQLLLPVIDDVVLDVNVKEKIITV 165
>gi|298530725|ref|ZP_07018127.1| 16S rRNA processing protein RimM [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510099|gb|EFI34003.1| 16S rRNA processing protein RimM [Desulfonatronospira thiodismutans
ASO3-1]
Length = 178
Score = 38.1 bits (87), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 7/163 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YV-LYSNDNRELRILKMYRKNKRFI 61
L+ + HGL GE+ I YA++P+ L + Y+ + R R +
Sbjct: 6 LLTCGKVVKPHGLKGEICIIWYADSPLLLKKAEKIYLRMPGKRPRAFTPESSREHGSRLL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I A + R ++ A +D + +++E + +L F G+Y G + G
Sbjct: 66 LQLEQITGRDQAEKWRGAEILADSKDLPRD--DDNEIYLHELLGCSVFLDSGEYLGVLQG 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G + EI + + L P ++ ++ + K +I P
Sbjct: 124 FVPRKNGEVWEIVDEKGREILFPAEDEFIVHLDPEAKKAVISP 166
>gi|257061858|ref|YP_003139746.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8802]
gi|256592024|gb|ACV02911.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8802]
Length = 186
Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKN-----KRFI 61
+ I GL GE+ + S ++ P + L S D ++ +++ R ++
Sbjct: 10 IGRIVAAQGLKGELKVMSSSDFPERFEKPGTRWLQSPDRLSIQEVELVRGRYVPGKNLYV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
+ I + A LRD L D +L EDE+ +DL + + +Q G+ G V
Sbjct: 70 IKLAEIADRTQAETLRDYTLLVPSSDRP--QLNEDEYHVSDLINLTVYHQQTGEEIGVVT 127
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + G +LE++ NT K LIPF V V+L +I I+P
Sbjct: 128 DMLSAG-NDLLEVQLNTLNSSENTSSKKVLIPFVYEIVPVVDLVNKRIEINP 178
>gi|313675828|ref|YP_004053824.1| 16S rRNA processing protein rimm [Marivirga tractuosa DSM 4126]
gi|312942526|gb|ADR21716.1| 16S rRNA processing protein RimM [Marivirga tractuosa DSM 4126]
Length = 182
Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+KLD+ + + HGL GE+YI + P D ++L + I + KN
Sbjct: 1 MKLDQCFQLGMVLKPHGLKGELYISLDTDYPEDYQELESVFLLQNGKLVPFFIEHIQLKN 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + F +++ A LR L+ + EL ++F+ ++ + D + G
Sbjct: 61 KEALVKFEDVEDKEGALALRGSTLHLPLTELP--ELTGNQFYFHEISGFQIEDTEKGMLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
V V+ G ++ + + K LIP +L V+ +EN +L
Sbjct: 119 VVKEVFEAGHQDLIGM-DYKGKEVLIPINDDVILNVD-RENSLL 160
>gi|260881183|ref|ZP_05893339.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
gi|260849730|gb|EEX69737.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
Length = 180
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI------LKMYRKNKRFI 61
V + +G HG++GE+ I I L + D +E+ + ++ + +K+FI
Sbjct: 18 VTIGKVGAAHGIHGEMRI-------IPLTDFTERFADMKEVMVGDELLHIESCKYHKQFI 70
Query: 62 A-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F A L L R + LEE EF+ D+ + +D G G V
Sbjct: 71 LLKFREYPVREDAMRLTGRLLTVDRSEAV--PLEEGEFYTFDIIGLTVYDETGNTLGTVE 128
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ + + + + LIP K V +++ ++++D
Sbjct: 129 NVLRTGSNDVYQARRPDGRELLIPALKAVVKVIDVAGGRMVVD 171
>gi|322373350|ref|ZP_08047886.1| 16S rRNA processing protein RimM [Streptococcus sp. C150]
gi|321278392|gb|EFX55461.1| 16S rRNA processing protein RimM [Streptococcus sp. C150]
Length = 172
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKM----YRKNKRF-I 61
+ I T GL GE+ + S +A+ + +L D+++ I+ + +RK+K F I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFK-KKSLLALFDDKDNYIMDVEVASHRKHKNFDI 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV
Sbjct: 65 VKFKGLYHINDVEKYKGYSLKVAEENLTD--LDDGEFYYHEIIGLDVYEGD-TLIGQVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K +K L+P+ VL+V++ +I ++ + GL++
Sbjct: 122 ILQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVE-LMEGLDD 170
>gi|254468713|ref|ZP_05082119.1| 16S rRNA processing protein RimM [beta proteobacterium KB13]
gi|207087523|gb|EDZ64806.1| 16S rRNA processing protein RimM [beta proteobacterium KB13]
Length = 165
Score = 38.1 bits (87), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSN--DNRELRILKMYRKNK 58
++ LV++ I + +G+ G V I + A N I L N D + I ++ + +
Sbjct: 1 MENLVIIGKIISAYGIKGWVKIRPFTETAKNFIQYKTQFLSRNQKDWNRVEIKEIKIQGQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA D S S A+ Q +L EDEF+ DL ++ D + G+
Sbjct: 61 DVIADIGLTDRDQSISHKGYFLAIARDQL---PQLPEDEFYWDDLIGLKVIDVDREDLGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ GA +L + E+ LIP+ + +V+ I +D
Sbjct: 118 VVGLIETGANDVLVVSGDRER--LIPYIPQVIKKVDTHNQLIEVD 160
>gi|308187874|ref|YP_003932005.1| 16S rRNA-processing protein rimM [Pantoea vagans C9-1]
gi|308058384|gb|ADO10556.1| 16S rRNA-processing protein rimM [Pantoea vagans C9-1]
Length = 182
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 14 IVLGKMGAAYGIRGWLKVFSSTEDAESIFNYQPWFIQRAGKWQQVELEGWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A++L + ++ LEE +++ DL + + +G G+V +
Sbjct: 74 VKGIDDRDAAAQLTNCEIQVDSTQLP--SLEEGDYYWKDLMGCQVVNLEGYEMGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIRKVDLSTGVIEVD 177
>gi|113953430|ref|YP_729432.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9311]
gi|123132772|sp|Q0IDP0|RIMM_SYNS3 RecName: Full=Ribosome maturation factor rimM
gi|113880781|gb|ABI45739.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9311]
Length = 187
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYV-LYSNDNRELRIL--KMYRKNKRFIA 62
+ T+ GL GE+ ++ ++ P R++ + +E+ +L + ++
Sbjct: 21 VGTLVGAQGLKGELRLNPASDFPERFTEPGTRWLQAKGSAPKEVELLEGRQLPGKSLYVV 80
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVCG 121
G++N SA L + +D EL E EF DL +E + G V
Sbjct: 81 RLKGVNNRASAEALVGCTVLVPAKDRP--ELAEGEFHLLDLVGLEARLAGSDEPIGTVSN 138
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ + G +LEIK KT L+PF + V +V L+E
Sbjct: 139 LIS-GGNDLLEIKLNSGKTVLVPFVEAIVPDVQLEEG 174
>gi|283786228|ref|YP_003366093.1| 16S rRNA processing protein [Citrobacter rodentium ICC168]
gi|282949682|emb|CBG89301.1| 16S rRNA processing protein [Citrobacter rodentium ICC168]
Length = 182
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+++G+ G + + S A + D + + + L+ +R N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWRHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVD 177
>gi|225551813|ref|ZP_03772756.1| 16S rRNA processing protein RimM [Borrelia sp. SV1]
gi|225371608|gb|EEH01035.1| 16S rRNA processing protein RimM [Borrelia sp. SV1]
Length = 166
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNR--ELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N+ +L ++N E +++ + K
Sbjct: 1 MFIKGVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNNSSVEAKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRSLIGFELWV--DDLLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|168262153|ref|ZP_02684126.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464152|ref|ZP_02698069.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194445761|ref|YP_002041938.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448986|ref|YP_002046680.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470975|ref|ZP_03076959.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735018|ref|YP_002115685.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197247653|ref|YP_002147611.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262483|ref|ZP_03162557.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197301201|ref|ZP_03166323.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|198245720|ref|YP_002216685.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388134|ref|ZP_03214746.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929602|ref|ZP_03220676.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205357377|ref|ZP_02347273.2| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205357811|ref|ZP_03223844.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205358802|ref|ZP_03224142.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205359386|ref|ZP_03224284.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|213424864|ref|ZP_03357614.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|289806537|ref|ZP_06537166.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|194404424|gb|ACF64646.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407290|gb|ACF67509.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457339|gb|EDX46178.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194710520|gb|ACF89741.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633267|gb|EDX51681.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197211356|gb|ACH48753.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240738|gb|EDY23358.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197287839|gb|EDY27227.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197940236|gb|ACH77569.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605232|gb|EDZ03777.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321321|gb|EDZ06521.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205322055|gb|EDZ09894.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205329278|gb|EDZ16042.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331817|gb|EDZ18581.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336450|gb|EDZ23214.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205349285|gb|EDZ35916.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|321223466|gb|EFX48531.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614477|gb|EFY11408.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322662636|gb|EFY58844.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|323131019|gb|ADX18449.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323221545|gb|EGA05958.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323234696|gb|EGA18782.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323253267|gb|EGA37097.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257063|gb|EGA40772.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323269614|gb|EGA53067.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 183
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|241667832|ref|ZP_04755410.1| 16S rRNA processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876375|ref|ZP_05249085.1| 16S rRNA processing protein rimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842396|gb|EET20810.1| 16S rRNA processing protein rimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 169
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN--RELRILKMYRKNKRF 60
V +A IG T+ L+GE+ + A++ L N Y+ ++ + L+ + R+ +
Sbjct: 5 FVEIAKIGATYKLDGELNLYPLASSIETLLSYGNWYIQLPANSAWQPLKDESVLRRADKL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ ++++ +A + + + ++ ++ DE + TDL + +G+V
Sbjct: 65 YIKLASVNDVETAKKYVNSLIGVPKEALP--KVGNDEAYFTDLIGCTIVNTANDSFGKVI 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ GA +L K ++ +LIP+ K ++ +L KI++D
Sbjct: 123 GIIETGANEVLVCKKDSDE-YLIPYVKQYIVSEDLDLKKIVVD 164
>gi|330446981|ref|ZP_08310632.1| 16S rRNA processing protein RimM [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491172|dbj|GAA05129.1| 16S rRNA processing protein RimM [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 177
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G T+G+ G + + SY + Y + + +E + R + +A
Sbjct: 9 IIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEFHVESWKRHGQGLVAK 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A + ++ + L ++EF+ +L M +G G+V +
Sbjct: 69 LEGMDIREEAQVFTNAEVAVLAEQLP--ALSDEEFYWRELFGMSVVTTEGYDLGKVTDIL 126
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF 145
G+ +L +K ++ F LIPF
Sbjct: 127 ETGSNDVLVVKANLKDAFGQKERLIPF 153
>gi|116512362|ref|YP_809578.1| 16S rRNA-processing protein [Lactococcus lactis subsp. cremoris
SK11]
gi|123125479|sp|Q02Y16|RIMM_LACLS RecName: Full=Ribosome maturation factor rimM
gi|116108016|gb|ABJ73156.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp.
cremoris SK11]
Length = 171
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 10 MATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-----FI 61
+ TI T GL GEV + +AN VL D+++ I + K+ R ++
Sbjct: 7 VGTIVNTQGLQGEVRVLPSTDFANERFSKGA-VLALFDDKDNYIQDLKVKSGRLQKNFYV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G +I+ + + + +++ EEL + EF+ ++ + ++ GQ+
Sbjct: 66 VKFEGFYHINDVEKYKGYVVKIAQEN--QEELNDGEFYYHEIIGSDVYEND-ILIGQISE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K ++ L+P+ VL+V++ ++++ +D I GL++
Sbjct: 123 ILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVD-IMEGLDD 171
>gi|218904971|ref|YP_002452805.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
gi|218537285|gb|ACK89683.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
Length = 106
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G N++ + + L EL E E++ ++ +G+ G + V
Sbjct: 2 TFEGYGNVNEVEQFKGSLLKVPEDQLG--ELAEGEYYYHEIIGCNVVTEEGEALGTIKEV 59
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + IK + LIP+ VL+VN+ ENK++ + GL
Sbjct: 60 LSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNI-ENKLVTIHVMEGL 105
>gi|159028219|emb|CAO88029.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 192
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS---NDNRELRILKMYRKNKR-----FI 61
+ TI GL GE+ + S ++ P + + E+R + + R + ++
Sbjct: 8 IGTIVAPQGLEGELRVLSVSDFPERFQKRGIRGIQETQGGEIREITLLRGRELPGKNVYV 67
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVC 120
G++N A LR KL+A + + L+ DE+ ++L +E + G+ G V
Sbjct: 68 IKLEGVENREQAQALRGYKLWANK--LEKPRLKADEYHVSELVNLEVYHHLTGEKIGVVV 125
Query: 121 GVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + IL ++ + + T L+PF K V V+L+ +I I P
Sbjct: 126 DIL-WAGNDILAVQLEANLASVKKKSPSSDSKATALVPFVKEIVPLVDLKAARIEIAP 182
>gi|329297077|ref|ZP_08254413.1| 16S rRNA-processing protein RimM [Plautia stali symbiont]
Length = 182
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLY-SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S +A + D + + + +++ + N+ I
Sbjct: 14 IILGKMGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRAGQWQQVELEGWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A++L + ++ LEE +++ DL + + G G+V +
Sbjct: 74 VKGIDDRDAAAQLTNCEITVDSTQLP--ALEEGDYYWKDLMGCKVVNLDGYEMGKVIDLM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKKVDLATGTIEVD 177
>gi|16761528|ref|NP_457145.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765990|ref|NP_461605.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142999|ref|NP_806341.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414640|ref|YP_151715.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161615607|ref|YP_001589572.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197363567|ref|YP_002143204.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|207858023|ref|YP_002244674.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213419596|ref|ZP_03352662.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213581512|ref|ZP_03363338.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622615|ref|ZP_03375398.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647493|ref|ZP_03377546.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|238909518|ref|ZP_04653355.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289824173|ref|ZP_06543768.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|61230458|sp|P0A2B5|RIMM_SALTY RecName: Full=Ribosome maturation factor rimM
gi|61230463|sp|P0A2B6|RIMM_SALTI RecName: Full=Ribosome maturation factor rimM
gi|67461314|sp|Q5PFF7|RIMM_SALPA RecName: Full=Ribosome maturation factor rimM
gi|189040851|sp|A9MZ50|RIMM_SALPB RecName: Full=Ribosome maturation factor rimM
gi|238689950|sp|B5BE93|RIMM_SALPK RecName: Full=Ribosome maturation factor rimM
gi|238690393|sp|B5QUG3|RIMM_SALEP RecName: Full=Ribosome maturation factor rimM
gi|25364905|pir||AG0833 16S rRNA processing protein [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16421221|gb|AAL21564.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503829|emb|CAD05854.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138632|gb|AAO70201.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128897|gb|AAV78403.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161364971|gb|ABX68739.1| hypothetical protein SPAB_03388 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197095044|emb|CAR60590.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|206709826|emb|CAR34178.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247867|emb|CBG25696.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994817|gb|ACY89702.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159235|emb|CBW18750.1| 16S rRNA processing protein rimM. Probable 16S rRNA processing
protein rimM [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913698|dbj|BAJ37672.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087153|emb|CBY96920.1| Ribosome maturation factor rimM [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322621458|gb|EFY18311.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624319|gb|EFY21152.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629382|gb|EFY26160.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633622|gb|EFY30364.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638335|gb|EFY35033.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639773|gb|EFY36456.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647365|gb|EFY43861.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650465|gb|EFY46875.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656042|gb|EFY52342.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661436|gb|EFY57661.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322667009|gb|EFY63184.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671378|gb|EFY67501.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677615|gb|EFY73678.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681559|gb|EFY77589.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683959|gb|EFY79969.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195528|gb|EFZ80706.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197901|gb|EFZ83024.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203079|gb|EFZ88111.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205320|gb|EFZ90295.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210530|gb|EFZ95414.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323218189|gb|EGA02901.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323223765|gb|EGA08070.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230952|gb|EGA15070.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323238735|gb|EGA22785.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241435|gb|EGA25466.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246868|gb|EGA30835.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323260464|gb|EGA44075.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264479|gb|EGA47985.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326624441|gb|EGE30786.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332989599|gb|AEF08582.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 182
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 14 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 177
>gi|227510445|ref|ZP_03940494.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190097|gb|EEI70164.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 174
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRFIAT 63
+ I T GL GEV + + + P N + ++ L L++ RK+K F+
Sbjct: 6 VGKIVNTQGLKGEVRVIAITDFPEKRFKKGNTIFAQTEKSKALISLEIDGVRKHKGFVLL 65
Query: 64 -FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G I+ L+ L D++L+ E++ + ++ ++ GQ+ +
Sbjct: 66 HFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVYEGD-NLIGQIKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ GA + ++ +K L+P V EV+L+ +KI ++ I GL++
Sbjct: 125 LSPGANDVWVVQRKAKKDLLLPKIDSVVKEVDLKNHKINVE-IPEGLDDA 173
>gi|223889503|ref|ZP_03624089.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 64b]
gi|223885189|gb|EEF56293.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 64b]
Length = 166
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNR--ELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N+ +L N++ E++++ + K
Sbjct: 1 MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKNNSSSVEVKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|223986421|ref|ZP_03636426.1| hypothetical protein HOLDEFILI_03738 [Holdemania filiformis DSM
12042]
gi|223961617|gb|EEF66124.1| hypothetical protein HOLDEFILI_03738 [Holdemania filiformis DSM
12042]
Length = 179
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 39 VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEF 98
V ++E+ I + + G+ NI+ + +L ++ L E E+
Sbjct: 51 VCLPEGDQEVTIAAVKEHKGLLLVLLEGVTNINQVERYKGCELAVDQEALPP--LAEGEY 108
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ L+ ++ D QG G V + A +++ +K K LIP+ V +V+LQ
Sbjct: 109 YFFQLKGLKAIDPQGNELGTVVRMEASAAQNLIRLKKPDGKQALIPYIDVFVKQVDLQAK 168
Query: 159 KILIDPI 165
I +D I
Sbjct: 169 TITLDLI 175
>gi|227513454|ref|ZP_03943503.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227524597|ref|ZP_03954646.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
gi|227083327|gb|EEI18639.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227088272|gb|EEI23584.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
Length = 174
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKM--YRKNKRFIAT 63
+ I T GL GEV + + + P N + ++ L L++ RK+K F+
Sbjct: 6 VGKIVNTQGLKGEVRVIAITDFPEKRFKKGNTIFAQTEKSKALISLEIDGVRKHKGFVLL 65
Query: 64 -FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G I+ L+ L D++L+ E++ + ++ ++ GQV +
Sbjct: 66 HFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVYEGD-NLVGQVKEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ GA + ++ +K L+P + EV+L+ +KI ++ I GL++
Sbjct: 125 LSPGANDVWVVQRKAKKDLLLPKIDSVIKEVDLKNHKINVE-IPEGLDDA 173
>gi|251788623|ref|YP_003003344.1| 16S rRNA-processing protein RimM [Dickeya zeae Ech1591]
gi|247537244|gb|ACT05865.1| 16S rRNA processing protein RimM [Dickeya zeae Ech1591]
Length = 182
Score = 37.7 bits (86), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL----RILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S + + Y + N+ L I N+ +
Sbjct: 14 IVLGKLGSTYGIKGWLRVFSSTEDAESIFDYQPWFIRNKGLWQPIEIESWRHHNQDLVIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A+ L + ++ EL+E +++ DL + G G+V +
Sbjct: 74 LKGIDDREAANLLTNCEIVVDSAQLP--ELDEGDYYWKDLIGCDVVTIGGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L ++ ++ + LIPF T+ + ++L ++I +D
Sbjct: 132 ETGSNDVLVVRANLKDAYGVKERLIPFLTEQVIKHIDLSTHRIEVD 177
>gi|332528267|ref|ZP_08404272.1| 16S rRNA-processing protein RimM [Hylemonella gracilis ATCC 19624]
gi|332042287|gb|EGI78608.1| 16S rRNA-processing protein RimM [Hylemonella gracilis ATCC 19624]
Length = 193
Score = 37.7 bits (86), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+AT + + +A LR +++ R F +DE++ DL ++ +R+ GQV
Sbjct: 84 VATAHEVTDRSAAEALRGARIFVSRSSFPTPN--QDEYYWVDLLGLDVVNRESVLLGQVR 141
Query: 121 GVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G ++L I + +IPF V V+L +I +D
Sbjct: 142 DLQSTGPQTVLVIAYDGPDGKPAERMIPFVSAYVDGVDLAARRISVD 188
>gi|170765933|ref|ZP_02900744.1| 16S rRNA processing protein RimM [Escherichia albertii TW07627]
gi|170125079|gb|EDS94010.1| 16S rRNA processing protein RimM [Escherichia albertii TW07627]
Length = 183
Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRLIEVD 178
>gi|238022961|ref|ZP_04603387.1| hypothetical protein GCWU000324_02883 [Kingella oralis ATCC 51147]
gi|237865769|gb|EEP66907.1| hypothetical protein GCWU000324_02883 [Kingella oralis ATCC 51147]
Length = 169
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR---ELRILKMY 54
M V M I G+ G + + S Y ++ +D ++ L E+ KM
Sbjct: 1 MSNTQNWVAMGYIKGAFGIKGWIKVQSNTEYTDSLLDYPQWRLSKGKEHILAEVESGKM- 59
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ I + +A+ LR + R+ F E EE E++ DL M +R+G
Sbjct: 60 -AGDELQVKLAHIHDRDAAALLRGYTIEVPREQF--EPTEEGEYYWADLVGMAVKNREGI 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+V + GA IL ++ + LIPF + + V+ + +I D
Sbjct: 117 HLGEVINLMETGAHDILIVRGEHGEK-LIPFVEQFIDNVDNENRQITCD 164
>gi|313668922|ref|YP_004049206.1| 16S rRNA processing protein [Neisseria lactamica ST-640]
gi|309379004|emb|CBX22457.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006384|emb|CBN87847.1| putative 16S rRNA processing protein [Neisseria lactamica 020-06]
Length = 169
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
V M I G+ G + I + YA++ +D + L + L+ + N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAADTEYADSLLDYPEWQLVKDGKTVAVSLEGGKVANGELQVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI++ SA LR + R+ F EE E++ DL M ++ G+V +
Sbjct: 68 FEGINDRDSAFSLRGYTIEIPREAFA--PTEEGEYYWADLVGMTVANKDNTVLGKVSSLM 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L + + LIPF V V+ I+ D
Sbjct: 126 ETGANDVLVVDGEYGQ-ILIPFVSQYVETVDAGSKTIIAD 164
>gi|320354481|ref|YP_004195820.1| 16S rRNA processing protein RimM [Desulfobulbus propionicus DSM
2032]
gi|320122983|gb|ADW18529.1| 16S rRNA processing protein RimM [Desulfobulbus propionicus DSM
2032]
Length = 180
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 11/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRIL---KMYRKN-K 58
D V + I HG+ GE+ I S+ P +LNRY + ++D ++ + R N
Sbjct: 10 DDFVALGLITRPHGIRGELKIRSFTEKPENLNRYRRLFLASDVSSAKLEFTNVLARVNGS 69
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + A EL + ++ +D EF+ L+ + G+ G
Sbjct: 70 SVILRLKECTDRDRAEELVGMLIWVPSKDLPPT--AAGEFYLHSLQGKQARTTDGQELGT 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G +IL I+ E+ +L+P + V++ EN +++D
Sbjct: 128 VETFLAGGGQNILVIRQGGEE-YLVPVVGAFI--VSITENMVILD 169
>gi|205355554|ref|ZP_03222325.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346788|gb|EDZ33420.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 132
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 64 FSGIDNIHSASELRDLKLYAK----RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ++I A EL +L L+ RQ K L++DEFF D+ E E F+ + K G+V
Sbjct: 16 FENYEDIEKAKELTNLILFQSIEKSRQTCK---LKKDEFFYFDILECEVFE-EDKRLGKV 71
Query: 120 CGVYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQENKIL 161
+ GA + EI++ K F IP+ V +++++ +I
Sbjct: 72 VDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQIF 120
>gi|77919816|ref|YP_357631.1| 16S rRNA processing protein [Pelobacter carbinolicus DSM 2380]
gi|109893029|sp|Q3A2E6|RIMM_PELCD RecName: Full=Ribosome maturation factor rimM
gi|77545899|gb|ABA89461.1| 16S rRNA processing protein RimM [Pelobacter carbinolicus DSM 2380]
Length = 175
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDNRELRILKMYRKNK----- 58
D L+L IGT HGL G++ I S + P+ + L E +LK R+
Sbjct: 7 DLLILGVVIGT-HGLRGDLKIRGSDQDFPLLSKMHQLVFLREGE-TVLKCARRKAGWYKG 64
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +G ++ + L ++ +R D L E++ L+ M DR+ G
Sbjct: 65 HLLLQIAGYRDVRAVQHLVGCEVAVRRDDVPG--LPAGEYYWFQLKGMTAVDRRLGALGC 122
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ ++ A I I + L+P K + +V+L+ N+IL D
Sbjct: 123 LEDIFTTAAHDIYVINGDYGEV-LVPAVKAFIADVDLESNRILFD 166
>gi|331664173|ref|ZP_08365082.1| 16S rRNA processing protein RimM [Escherichia coli TA143]
gi|331058630|gb|EGI30608.1| 16S rRNA processing protein RimM [Escherichia coli TA143]
Length = 183
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V +
Sbjct: 75 LKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRLIEVD 178
>gi|111115529|ref|YP_710147.1| hypothetical protein BAPKO_0741 [Borrelia afzelii PKo]
gi|216263682|ref|ZP_03435677.1| 16S rRNA processing protein RimM [Borrelia afzelii ACA-1]
gi|122956329|sp|Q0SMF7|RIMM_BORAP RecName: Full=Ribosome maturation factor rimM
gi|110890803|gb|ABH01971.1| hypothetical protein BAPKO_0741 [Borrelia afzelii PKo]
gi|215980526|gb|EEC21347.1| 16S rRNA processing protein RimM [Borrelia afzelii ACA-1]
Length = 166
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKR 59
+ + I +++G+NG I S +NN D N VL N E++++ + K+
Sbjct: 1 MFIKGVILSSYGVNGYARIKSISNNFCDFINLKNNKVLLKKSNGFAIEVKVIDVNIKSNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F GID S L +L+ D L+E E++ L T + G+V
Sbjct: 61 LFLKFEGIDAPESVKPLIGFELWV--DDSLASSLKEGEYYLGKLIGY-TIVNDNRKLGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE+K + K F IPF + ++ +E I
Sbjct: 118 VAFFEYLNNVFLEVKVGI-KFFFIPFLSIYIGNIDAREKTI 157
>gi|188534779|ref|YP_001908576.1| 16S rRNA-processing protein RimM [Erwinia tasmaniensis Et1/99]
gi|188029821|emb|CAO97702.1| 16S rRNA-processing protein RimM [Erwinia tasmaniensis Et1/99]
Length = 185
Score = 37.4 bits (85), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMY-RKNKRFIAT 63
+++ +G+ +G+ G + + S A + D + + +L L+ + R N+ I
Sbjct: 17 LILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A L + ++ + EL+ +++ DL + +G G+V +
Sbjct: 77 VKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQVVTVEGYELGKVIDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L +K ++ F LIPF V++ V+L I +D
Sbjct: 135 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIKVD 180
>gi|121610858|ref|YP_998665.1| 16S rRNA-processing protein RimM [Verminephrobacter eiseniae
EF01-2]
gi|209573627|sp|A1WPU0|RIMM_VEREI RecName: Full=Ribosome maturation factor rimM
gi|121555498|gb|ABM59647.1| 16S rRNA processing protein RimM [Verminephrobacter eiseniae
EF01-2]
Length = 192
Score = 37.4 bits (85), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMYRKNKRFI 61
I GL G + Y+ +P L R+ L L I + +
Sbjct: 25 IADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAARGAKAFGGTVLLPIRQAKDHGGMVL 84
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A ID+ ++A LR +++ R E++ DL ++ +RQG GQV
Sbjct: 85 AWAQDIDDRNTAEALRGARIFVPRS--SFPSPPPGEYYWVDLIGLQVINRQGLALGQVRE 142
Query: 122 VYNFGAGSILEIKNTMEKTF---LIPFTKFAVLEVNLQENKILID 163
+ GA ++L + + + +IPF V +V L + +I++D
Sbjct: 143 LRATGAQTLLVLAHEQDGKAGKRMIPFVPAFVDQVELPQKRIIVD 187
>gi|27904846|ref|NP_777972.1| 16S rRNA processing protein rimM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|29427604|sp|P59425|RIMM_BUCBP RecName: Full=Ribosome maturation factor rimM
gi|27904244|gb|AAO27077.1| 16S rRNA processing protein rimM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 180
Score = 37.4 bits (85), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 12/163 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRK--NKRFIATFS 65
+A G HG+ G + + SY ++ YV + + + ++IL Y K K F+ +
Sbjct: 12 IAKFGAAHGILGWIRVFSYTEKKENIFDYVPWFIKKEQKIIKILPKYWKILKKTFLVKIN 71
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
++N A +L + + ++ +L +E++ D+ + FD G+V +
Sbjct: 72 DVNNRSMAQKLTNYDILINQKTL--PKLNNNEYYWKDIVDCTVFDTNFIKLGRVSELIRT 129
Query: 126 GAGSIL-----EIKNTMEKTFLIPFTKFAVL-EVNLQENKILI 162
+ IL IKN + LIPF ++ EVN+ KI+I
Sbjct: 130 PSNDILVVKASNIKNISQNDMLIPFLHPQIISEVNINNKKIVI 172
>gi|259909408|ref|YP_002649764.1| 16S rRNA-processing protein RimM [Erwinia pyrifoliae Ep1/96]
gi|224965030|emb|CAX56561.1| 16S rRNA-processing protein [Erwinia pyrifoliae Ep1/96]
Length = 182
Score = 37.4 bits (85), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMY-RKNKRFIAT 63
+++ +G+ +G+ G + + S A + D + + +L L+ + R N+ I
Sbjct: 14 LILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A L + ++ + EL+ +++ DL + +G G+V +
Sbjct: 74 VKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQVVTVEGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L +K ++ F LIPF V++ V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIKVD 177
>gi|332976867|gb|EGK13690.1| 16S rRNA-processing protein RimM [Psychrobacter sp. 1501(2011)]
Length = 176
Score = 37.4 bits (85), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/167 (17%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D L+ + + +G+ G +++ S + + Y + + + L + + ++
Sbjct: 7 DSLMKIGQLKKPYGIKGWLWVFSETEDREAIFSYSPWWMKTATGFKPLTVTEWRKQGTGI 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A F + + + A + + ++ + E EDE++ +DL + ++Q + G +
Sbjct: 67 VAQFEQVPDRNIAETMNGVSIWIDKDSLP--ETGEDEYYWSDLVGLSVINKQQECLGTIK 124
Query: 121 GVYNFGAGSILEI---KNTM-EKTFLIPFTKFAVLEVNLQENKILID 163
++ GA I+++ K+++ ++ +IP+ K V V+L ++++D
Sbjct: 125 ELFETGAHPIMKVVPSKDSIDDEPRMIPWHKQTVDVVDLAAGQMIVD 171
>gi|283479486|emb|CAY75402.1| 16S rRNA-processing protein rimM [Erwinia pyrifoliae DSM 12163]
Length = 185
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMY-RKNKRFIAT 63
+++ +G+ +G+ G + + S A + D + + +L L+ + R N+ I
Sbjct: 17 LILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A L + ++ + EL+ +++ DL + +G G+V +
Sbjct: 77 VKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQVVTVEGYELGKVIDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L +K ++ F LIPF V++ V+L I +D
Sbjct: 135 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIKVD 180
>gi|83589818|ref|YP_429827.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
gi|109893023|sp|Q2RJV5|RIMM_MOOTA RecName: Full=Ribosome maturation factor rimM
gi|83572732|gb|ABC19284.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
Length = 176
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 16 THGLNGEVYIDSYANNPIDL---NRYVLYSN--DNRELR-----ILKMYRKNKRFIATFS 65
THG+ GEV + + P R +L D RE R ++ + I +
Sbjct: 14 THGIRGEVKVFPLTDFPERFRPGTRLILEQEGADGREGRTFPVTVISVRPGKGNLILKLA 73
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I++ A +R L K + ++ E L E ++ L + G++ G + +
Sbjct: 74 EINDADQAGAVRGATL--KVEPWEVEPLPEGHYYIYQLLGSRVYTTGGEFLGILRDILAT 131
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + ++N LIP K V +V+L +I ++ + GL +
Sbjct: 132 GANDVYVVRNEDAGEILIPALKTVVRQVDLARKEIRVE-LPPGLRD 176
>gi|291086323|ref|ZP_06355423.2| 16S rRNA processing protein RimM [Citrobacter youngae ATCC 29220]
gi|291068897|gb|EFE07006.1| 16S rRNA processing protein RimM [Citrobacter youngae ATCC 29220]
Length = 183
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ SA+ L + ++ LEE ++ DL + +G G+V +
Sbjct: 75 LKGVDDRDSANLLTNCEIVVDSSQLP--ALEEGSYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|255994438|ref|ZP_05427573.1| 16S rRNA processing protein RimM [Eubacterium saphenum ATCC 49989]
gi|255993151|gb|EEU03240.1| 16S rRNA processing protein RimM [Eubacterium saphenum ATCC 49989]
Length = 168
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M K D +V+ T+ G+ GE+ + S+A +P + ++ D + + +
Sbjct: 1 MQKEDFIVIGKTLAP-FGVRGEIKVKSFAQSPDRFKKLPEVHIGDKPYIVESAKIQDHNT 59
Query: 60 FIATFSGIDNIHSASELR-DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + GID+ +AS++R D+ + A E E+E + DL ++ +++ KY G+
Sbjct: 60 VILSLGGIDDRDAASDVRGDVYMTASLL-----EPTENEVYIRDLRGLKVYEKD-KYIGE 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
+ + IK K L+P T + +++Q+ K+ + + AG+ T
Sbjct: 114 ILRAEIIAGRELYLIKLPDGKELLLPCTAEFIKTIDMQDRKMQV-VLPAGIMETA 167
>gi|270307929|ref|YP_003329987.1| 16S rRNA processing protein RimM [Dehalococcoides sp. VS]
gi|270153821|gb|ACZ61659.1| 16S rRNA processing protein RimM [Dehalococcoides sp. VS]
Length = 166
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+L+ + G+NG + I + P D+ +L + + + + + S
Sbjct: 7 ILIGKVLGIWGMNGGLKIGVLTDFPERFDIGNKLLIRRTAYTVS--QTSWQKAQAVIHLS 64
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I +I +A EL + K +L E +++ L +E G+ GQ+ + +
Sbjct: 65 EITDIDAAEELIGAPVEIPFSALK--KLPEGVYYDFQLIGLEVVGLSGEKIGQIKEILHM 122
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ I I K LIP K V E+NLQ K++IDPI L+
Sbjct: 123 PSNDIYVISYG-AKEALIPAVKDVVKEINLQTYKMIIDPIPGLLD 166
>gi|304384769|ref|ZP_07367115.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
gi|304328963|gb|EFL96183.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
Length = 192
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+A I T GL GE+ + +Y + P + L + + + + + +
Sbjct: 27 VAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPFKGMW 86
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+D+I+ + + + L K + + +EL + EF+ ++ + T G+ G+V
Sbjct: 87 LIQLAGLDSINEVEKFKGMML--KIAEDQLQELADGEFYQHEIIGL-TVIEDGQTLGKVK 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ ++G + ++ +K L+P+ VL+V+L ++ +
Sbjct: 144 EILSYGPNDVWVVERPGKKDLLLPYLNDVVLKVDLDKSIV 183
>gi|238926146|ref|ZP_04657906.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304437005|ref|ZP_07396968.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|238886036|gb|EEQ49674.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304369956|gb|EFM23618.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 169
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+ +++ IG HG+ G++ I + P + + L I + + + + F
Sbjct: 10 DERIVIGRIGAPHGVRGDLRIIPLTDFPERFAQMREVMAGDELLHITAVKPQGRNILMHF 69
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
D +A L L R + L+E E++ D+ + D G G V V
Sbjct: 70 REYDVRETAQRLTGRVLTVPRAEAA--PLDEGEYYVFDIVGLTVRDEDGNELGTVTDVLR 127
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVN 154
G+ + +++ L+P + V ++
Sbjct: 128 TGSNDVYAVRDAEGHELLVPALRTVVQNID 157
>gi|205353712|ref|YP_002227513.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|259585651|sp|B5RD84|RIMM_SALG2 RecName: Full=Ribosome maturation factor rimM
gi|205273493|emb|CAR38470.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628818|gb|EGE35161.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 182
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 14 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 74 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLYGQVIKKVDLATRTIEVD 177
>gi|325206560|gb|ADZ02013.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M04-240196]
Length = 169
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNSELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|294101556|ref|YP_003553414.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
gi|293616536|gb|ADE56690.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
Length = 176
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRIL-----KMYRKNK 58
LV + I HGL G + I + P + +Y D + L +L K
Sbjct: 6 LVTIGRIVGVHGLRGGIKIFPLTDFPQRFFTMKNLAVYGEDEKPLAVLTVQDMKFLDGKG 65
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
+A + SA L+D + ++ LEE E++ DL M+ F++ G+Y G
Sbjct: 66 IIVAETRELQTPKSAESLKDCLIKITSEE--RYSLEEGEYWIDDLIGMKVFEKGSGRYLG 123
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V V+ G I + + K IP + +V++ +N+++ + GL
Sbjct: 124 MVHNVFFAGENDIYTVISDDGKEHFIPAVSEFIKKVDI-DNRVMEVEMIEGL 174
>gi|195941516|ref|ZP_03086898.1| hypothetical protein Bbur8_01361 [Borrelia burgdorferi 80a]
gi|218249955|ref|YP_002375197.1| 16S rRNA processing protein RimM [Borrelia burgdorferi ZS7]
gi|224532408|ref|ZP_03673038.1| 16S rRNA processing protein RimM [Borrelia burgdorferi WI91-23]
gi|225548897|ref|ZP_03769874.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 94a]
gi|225550051|ref|ZP_03771012.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 118a]
gi|226320465|ref|ZP_03796031.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 29805]
gi|226321395|ref|ZP_03796922.1| 16S rRNA processing protein RimM [Borrelia burgdorferi Bol26]
gi|218165143|gb|ACK75204.1| 16S rRNA processing protein RimM [Borrelia burgdorferi ZS7]
gi|224512715|gb|EEF83086.1| 16S rRNA processing protein RimM [Borrelia burgdorferi WI91-23]
gi|225369510|gb|EEG98962.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 118a]
gi|225370500|gb|EEG99936.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 94a]
gi|226233191|gb|EEH31943.1| 16S rRNA processing protein RimM [Borrelia burgdorferi Bol26]
gi|226234107|gb|EEH32822.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 29805]
gi|312149398|gb|ADQ29469.1| 16S rRNA processing protein RimM [Borrelia burgdorferi N40]
Length = 166
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N VL N E++++ + K
Sbjct: 1 MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|322379256|ref|ZP_08053642.1| 16S rRNA processing protein [Helicobacter suis HS1]
gi|322379867|ref|ZP_08054154.1| 16S rRNA processing protein [Helicobacter suis HS5]
gi|321147702|gb|EFX42315.1| 16S rRNA processing protein [Helicobacter suis HS5]
gi|321148293|gb|EFX42807.1| 16S rRNA processing protein [Helicobacter suis HS1]
Length = 172
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 38 YVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL-YAKRQDFKDEELEED 96
Y + R L I K Y I F G++ A L L ++++ K L E
Sbjct: 41 YAYHIGSPRSLSI-KQYIAKPSLI-FFEGLETPELAKTLTGYTLAMSEKETLKYCHLAEG 98
Query: 97 EFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
EF + L +E + +G G+V V + + + L ++++ K+FLIP+ +L V+L
Sbjct: 99 EFLYSQLIGLE-IEEEGTILGRVVSVDDLASMAYLRVQSS-NKSFLIPYIARYILRVDLS 156
Query: 157 ENKI 160
+I
Sbjct: 157 TQRI 160
>gi|87123200|ref|ZP_01079051.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
gi|86168920|gb|EAQ70176.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
Length = 182
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 11/157 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYV-LYSNDNR--ELRILKMYRKNKRFIA 62
+ T+ GL GE+ I+ + P R++ + R EL + + F+
Sbjct: 16 VGTVVGAQGLGGELRINPASEFPERFTTPGTRWLQARGGEPRPVELSSGRQLPGKQLFVV 75
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQGKYWGQVCG 121
F G+++ +A L L + D L + EF DL +E + G V
Sbjct: 76 RFDGVNDRSAAEALVGQTLLVRADDRP--ALADGEFHLLDLVGLEVRLQADAEAIGSVTD 133
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ + G +LE++ T + LIPF + V EV+L+E
Sbjct: 134 LIS-GGNDLLEVERTDGRKQLIPFVEAIVPEVHLEEG 169
>gi|288922432|ref|ZP_06416620.1| 16S rRNA processing protein RimM [Frankia sp. EUN1f]
gi|288346235|gb|EFC80576.1| 16S rRNA processing protein RimM [Frankia sp. EUN1f]
Length = 214
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE--------FF 99
LR++ + R + F G+ + ++A LR L DE E ++
Sbjct: 86 LRVVTSRWHSGRLLVRFDGVGDRNAAEALRGTLLTID----SDESGPPAEPDDDDGDLWW 141
Query: 100 NTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
+ DL + G G V V + AG +L I LIPF + V V+L+
Sbjct: 142 DRDLVGLRAQTPAGDPLGDVIDVVHSPAGEMLAISRAGGGEHLIPFVREIVPTVDLEAGH 201
Query: 160 ILIDP 164
I++DP
Sbjct: 202 IVVDP 206
>gi|327289756|ref|XP_003229590.1| PREDICTED: plectin-like [Anolis carolinensis]
Length = 4389
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TFSG+ ASEL + K+ +K+Q E+L++ + DL E+ + R + + GV
Sbjct: 3116 TFSGLRAPVPASELLESKVLSKKQY---EQLKDGKKSVKDLAEVASVKRYLQGSDCIAGV 3172
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
Y L I M + L+P T +LE L+DP+
Sbjct: 3173 YVEETKEKLNIYEAMRRALLMPSTATVLLEAQ-AATGFLVDPV 3214
>gi|254374940|ref|ZP_04990421.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3548]
gi|151572659|gb|EDN38313.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3548]
Length = 169
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I++ +A + + + +Q +L EDE + DL + +G V
Sbjct: 65 YIKLANINDADTAKKYVNALIGVPKQALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|15595042|ref|NP_212831.1| 16S rRNA-processing protein RimM [Borrelia burgdorferi B31]
gi|224533375|ref|ZP_03673969.1| 16S rRNA processing protein RimM [Borrelia burgdorferi CA-11.2a]
gi|3914651|sp|O51640|RIMM_BORBU RecName: Full=Ribosome maturation factor rimM
gi|2688631|gb|AAC67046.1| conserved hypothetical protein [Borrelia burgdorferi B31]
gi|224513540|gb|EEF83897.1| 16S rRNA processing protein RimM [Borrelia burgdorferi CA-11.2a]
Length = 166
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N VL N E++++ + K
Sbjct: 1 MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|108563513|ref|YP_627829.1| 16S rRNA-processing protein RimM [Helicobacter pylori HPAG1]
gi|107837286|gb|ABF85155.1| 16S rRNA processing protein [Helicobacter pylori HPAG1]
Length = 184
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMY-------R 55
++L+ IG + GLNG + + ++ P L + V S N K Y
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKI 160
+ G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 FLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKI 172
>gi|109947826|ref|YP_665054.1| 16S rRNA-processing protein RimM [Helicobacter acinonychis str.
Sheeba]
gi|123362565|sp|Q17WC1|RIMM_HELAH RecName: Full=Ribosome maturation factor rimM
gi|109715047|emb|CAK00055.1| 16S rRNA processing protein RimM [Helicobacter acinonychis str.
Sheeba]
Length = 180
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 22/172 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--------LYSNDNRELRILKMYR--K 56
++L+ IG + GLNG + + ++ P L + V +S+ + + ++ Y K
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAK 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKY 115
N F+ T I+ A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 61 NLLFLET---INTPEMARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVVE-ENEI 116
Query: 116 WGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 117 LGKVIEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKI 168
>gi|312869889|ref|ZP_07730028.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
gi|311094474|gb|EFQ52779.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
Length = 168
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 10 MATIGTTHGLNGEV-------YIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI- 61
+ I THG+ GEV ++D L Y+ + EL I + R++K FI
Sbjct: 6 VGKIVNTHGIRGEVRVLPTTDFVDERFAPQQKL--YLQGTGAPVELTI-ERSRQHKGFIL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G DNI+ R+ +L D + LE+ +++ + + G+ G+V
Sbjct: 63 VKFVGYDNINDVESFRNHELMVSAAD--QQPLEDGQYYYHQIIGLTVKTVAGEELGKVKE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + ++ + L+P V +V+L ++L++
Sbjct: 121 ILAPGANDVWVVERPGKADLLLPVIDDVVKQVDLDNGQVLVE 162
>gi|172045867|sp|Q1CSB7|RIMM_HELPH RecName: Full=Ribosome maturation factor rimM
Length = 181
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMY-------R 55
++L+ IG + GLNG + + ++ P L + V S N K Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 61 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 116
Query: 115 YWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKI 160
+ G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 117 FLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKI 169
>gi|332678856|gb|AEE87985.1| 16S rRNA processing protein RimM [Francisella cf. novicida Fx1]
Length = 169
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IGTT+ L+GE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGTTYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I++ +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|217032541|ref|ZP_03438031.1| hypothetical protein HPB128_172g4 [Helicobacter pylori B128]
gi|216945746|gb|EEC24370.1| hypothetical protein HPB128_172g4 [Helicobacter pylori B128]
Length = 181
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----------NDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V S + +E I +
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCASSFKEYTIHSYEHA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 61 KNLLFLET---IQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 117 ILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKI 169
>gi|298735848|ref|YP_003728373.1| 16S rRNA processing protein RimM [Helicobacter pylori B8]
gi|298355037|emb|CBI65909.1| 16S rRNA processing protein RimM [Helicobacter pylori B8]
Length = 184
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----------NDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V S + +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCTSSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 64 KNLLFLET---IQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKI 172
>gi|157369098|ref|YP_001477087.1| 16S rRNA-processing protein RimM [Serratia proteamaculans 568]
gi|166985970|sp|A8GA19|RIMM_SERP5 RecName: Full=Ribosome maturation factor rimM
gi|157320862|gb|ABV39959.1| 16S rRNA processing protein RimM [Serratia proteamaculans 568]
Length = 182
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/154 (18%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
+++ +G+T+G+ G + + S N D +++ + + L+ ++++ + I
Sbjct: 14 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A+ L + ++ + LE D+++ DL + G G+V +
Sbjct: 74 VKGIDDRDAANLLTNCEIVVDSEQLP--PLEGDDYYWKDLMGCQVVTTSGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE 152
G+ ++ ++ ++ F L+PF V++
Sbjct: 132 ETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIK 165
>gi|89098668|ref|ZP_01171550.1| 16S rRNA-processing protein [Bacillus sp. NRRL B-14911]
gi|89086630|gb|EAR65749.1| 16S rRNA-processing protein [Bacillus sp. NRRL B-14911]
Length = 186
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + P + + ++ + +++ +K +R++K F +
Sbjct: 21 VGKIVNTHGVRGEVRVVSRTDFPEERYKAGSHLFLFQAGSKEPVKLTVKTHRQHKSFDLL 80
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G+D+++ A +L+ L +LEE+E++ ++ + G++ +
Sbjct: 81 TFEGLDSLNEAEKLKGAILKVSEDQLG--QLEENEYYFHEILGCTVKTIDEEEIGEITEI 138
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + + +K LIP+ + V +V+++E I+I+P+ L+
Sbjct: 139 LTPGANDVWVVSKKGQKDILIPYIEDVVKKVDVKEKVIIIEPMEGLLS 186
>gi|317009759|gb|ADU80339.1| 16S rRNA-processing protein RimM [Helicobacter pylori India7]
Length = 184
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----------IDLNRYVLYSNDNRELRILKMYR 55
++L+ IG + GLNG + + ++ P LN + S+ + +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSIAPLNAFSFASSFKEYIIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 64 KNLLFLET---IQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKI 172
>gi|307637818|gb|ADN80268.1| 16S rRNA processing protein [Helicobacter pylori 908]
gi|325996416|gb|ADZ51821.1| 16S rRNA processing protein [Helicobacter pylori 2018]
gi|325998004|gb|ADZ50212.1| 16S rRNA processing protein [Helicobacter pylori 2017]
Length = 181
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMY-------R 55
++L+ IG + GLNG + + ++ P L + V S N K Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + ++ +
Sbjct: 61 KNLLFLET---IHTPEKAKELANLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEKN-E 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 117 ILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKI 169
>gi|167627276|ref|YP_001677776.1| 16S rRNA-processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189040841|sp|B0TX17|RIMM_FRAP2 RecName: Full=Ribosome maturation factor rimM
gi|167597277|gb|ABZ87275.1| 16S rRNA processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 169
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILK---MYRKNKRF 60
V +A IG T+ L+GE+ + A++ L Y + N + LK + R+ +
Sbjct: 5 FVEIAKIGATYKLDGELNLYPLASSIETLLSYGDWYIQLPANSAWQPLKDESVLRRADKL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ ++++ +A + + + ++ ++ DE + TDL + +G+V
Sbjct: 65 YIKLASVNDVETAKKYVNSLIGVPKEALP--KVGNDEAYFTDLIGCTIVNTANDSFGKVI 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ GA +L K ++ +LIP+ K ++ +L KI++D
Sbjct: 123 GIIETGANEVLVCKKDSDE-YLIPYVKQYIVSEDLDLKKIVVD 164
>gi|15645763|ref|NP_207940.1| 16S rRNA-processing protein RimM [Helicobacter pylori 26695]
gi|14423883|sp|O25767|RIMM_HELPY RecName: Full=Ribosome maturation factor rimM
gi|2314304|gb|AAD08193.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 184
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----------IDLNRYVLYSNDNRELRILKMYR 55
++L+ IG + GLNG + + ++ P LN + S+ + +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYIIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 64 KNLLFLET---IQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKI 172
>gi|304404223|ref|ZP_07385885.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
gi|304347201|gb|EFM13033.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
Length = 176
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 13/151 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP-------IDLNRYVLYSNDNRELRILKMYRKN 57
+K + + THG+ GEV I + P L + N ++ ++ +
Sbjct: 3 EKWFTVGKLVNTHGIRGEVKIWPQTDFPDVRFAPGSKLTLFEEGKNGRLDVEVVSSRSQK 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ G DNI+ + + L QD D L+EDE++ ++ G+ G
Sbjct: 63 NVYVLKLKGYDNINDVEKYKGWILKVSEQDLID--LDEDEYYYHEIIGCVVITDAGEELG 120
Query: 118 QVCGVYNFGAGSILEIK----NTMEKTFLIP 144
V + + GA + +K N K LIP
Sbjct: 121 TVTEILSPGANDVWVVKGKGANGRPKEILIP 151
>gi|118602951|ref|YP_904166.1| 16S rRNA processing protein RimM [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|209573592|sp|A1AXN8|RIMM_RUTMC RecName: Full=Ribosome maturation factor rimM
gi|118567890|gb|ABL02695.1| 16S rRNA processing protein RimM [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 189
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRE-LRILKMYRKNKRF 60
DK +L+ I + G+ G V I S+ + N + + + + N + L I++ + K
Sbjct: 26 DKRLLIGQINSLFGVQGWVKIFSHTHPRENILFYQPWHINVDANWQTLEIIQGCVQAKTI 85
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A + + A + LY K+ +L+ E++ DL +E ++ G+V
Sbjct: 86 VAQIKDVFDKEQARAYIGIDLYIKKSQLP--QLKSGEYYWDDLIGLEVINKAKIILGKVS 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+ ++L I E+ +P+ +++V++ IL+D
Sbjct: 144 NLVDTGSNNVLVING--EREHWVPYISPFLIKVDIDNQIILVD 184
>gi|306820934|ref|ZP_07454554.1| 16S rRNA processing protein RimM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551048|gb|EFM39019.1| 16S rRNA processing protein RimM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 165
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIAT 63
+K + + I T GL GE I Y + + Y +Y + + + + N IA
Sbjct: 4 NKRIRIGKIVKTQGLKGEFKIYPYTTDSSSFSSYKNIYVDGVGDYSFEYVRQNNNVLIAK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+++I L + ++ D+ ++ ++EE E+ ++L ++ +D + G++ V
Sbjct: 64 FKGLNSIDDLPALINKDIFI---DYSEKRQMEEGEYLISELIGLKVYDGE-NLIGEIKDV 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+GA + + + LIP + V ++++ K++++ I
Sbjct: 120 LLYGANDVFCVIDMENNERLIPNVRQFVKNIDIENKKVIVNLIKG 164
>gi|15676496|ref|NP_273635.1| 16S rRNA-processing protein [Neisseria meningitidis MC58]
gi|304388171|ref|ZP_07370294.1| 16S rRNA processing protein RimM [Neisseria meningitidis ATCC
13091]
gi|14423894|sp|Q9K0K3|RIMM_NEIMB RecName: Full=Ribosome maturation factor rimM
gi|7225821|gb|AAF41019.1| 16S rRNA processing protein RimM [Neisseria meningitidis MC58]
gi|304337847|gb|EFM03993.1| 16S rRNA processing protein RimM [Neisseria meningitidis ATCC
13091]
gi|325139856|gb|EGC62388.1| 16S rRNA processing protein RimM [Neisseria meningitidis CU385]
gi|325144022|gb|EGC66332.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240013]
Length = 169
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|260598987|ref|YP_003211558.1| 16S rRNA-processing protein RimM [Cronobacter turicensis z3032]
gi|260218164|emb|CBA33000.1| Ribosome maturation factor rimM [Cronobacter turicensis z3032]
Length = 169
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
+++ +G+ +G+ G + + S A + D + + + L+ ++ N+ I
Sbjct: 1 MVLGKMGSCYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGQWQQVQLESWKHHNQDIIIK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ D LEE +++ DL + +G G+V +
Sbjct: 61 LKGVDDRDAANLLTNCEIVVDSSQLPD--LEEGDYYWKDLIGCQVVTTEGYTLGKVIDMM 118
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F L+PF V+ +V+L I +D
Sbjct: 119 ETGSNDVLVVKANLKDAFGIKERLLPFLDGQVIKKVDLATQTIEVD 164
>gi|126697136|ref|YP_001092022.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9301]
gi|166226462|sp|A3PF96|RIMM_PROM0 RecName: Full=Ribosome maturation factor rimM
gi|126544179|gb|ABO18421.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9301]
Length = 179
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSND-NRELRIL 51
M+ ++ + + I + HG+NG+V + S + D R++ N+ ++ ++
Sbjct: 1 MINKNEWLTVGLITSCHGINGQVKVKSLS----DFEERFLKPGMRWLQKENEPPSKIELI 56
Query: 52 KMYRKNKR--FIATFSGIDNIHSASELRDLKLYA---KRQDFKDEELEEDEFFNTDLEEM 106
+++ + FI GI+ + A +L+ K+ K K EE E N +++ +
Sbjct: 57 SGFKQPGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTL 116
Query: 107 ETFDRQGKYWGQVCGVYNFGAG-SILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
E + + K G+V + N I+E+ KN +K LIPF K V V+++ ++I+P
Sbjct: 117 E--NDELKTIGKVINLENEKNNLLIIELFKN--QKKVLIPFVKEIVPLVDIKNQFVIINP 172
>gi|216264800|ref|ZP_03436792.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 156a]
gi|215981273|gb|EEC22080.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 156a]
Length = 166
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN---RELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N VL N E++++ + K
Sbjct: 1 MFIKGVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNGSSVEVKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|172036717|ref|YP_001803218.1| 16S rRNA-processing protein RimM [Cyanothece sp. ATCC 51142]
gi|209573575|sp|B1WZK0|RIMM_CYAA5 RecName: Full=Ribosome maturation factor rimM
gi|171698171|gb|ACB51152.1| rRNA processing protein [Cyanothece sp. ATCC 51142]
Length = 191
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP----IDLNRYVLYSNDNR----ELRILKMYRKNKRFI 61
+ TI + GL GE+ + S + P I R++ +D EL K +I
Sbjct: 11 IGTIVSARGLKGELKVLSSTDFPERFEIPGKRWLQPPHDPYPQAIELISGKSVAGKNIYI 70
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
GI+N + A LR KL D + ELEE+E+ + L ++ + + G+ G V
Sbjct: 71 VRLEGIENRNQAETLRGYKLLI--MDQELPELEEEEYHVSQLINVQVYHHKTGELLGTVI 128
Query: 121 GVYNFGAGSILEI----------KNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
++ G +LEI K T E+ LIPF V V+L+ N+I I+P
Sbjct: 129 DLFTTGH-DLLEIQLINNSEREAKKTKERKVLIPFVYEIVPVVDLENNRIEINP 181
>gi|217034226|ref|ZP_03439644.1| hypothetical protein HP9810_2g5 [Helicobacter pylori 98-10]
gi|216943286|gb|EEC22748.1| hypothetical protein HP9810_2g5 [Helicobacter pylori 98-10]
Length = 181
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKMYRK 56
++L+ IG + GLNG + + ++ P L + V Y++ +E I++ Y
Sbjct: 1 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSYASSFKE-YIIRSYEH 59
Query: 57 NKRFIATFSGIDNIHS---ASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQ 112
K + ++ IH+ A EL +L L+ + K L++ EFF DL + + +
Sbjct: 60 AKNLLF----LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-E 114
Query: 113 GKYWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+V + A S++E + K FLIP+ F + E+ LQ+ KI +
Sbjct: 115 NEILGKVIEIQRISQIDYFLVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDKKITTN 172
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 173 NAKTLLENS 181
>gi|33862161|ref|NP_893722.1| 16S rRNA-processing protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|48474356|sp|Q7UZQ3|RIMM_PROMP RecName: Full=Ribosome maturation factor rimM
gi|33634379|emb|CAE20064.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 179
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNR-ELRILKM 53
M+ ++ +++ I + G+NG++ I S ++ P R++ N+ E +
Sbjct: 1 MINHNEWLIVGLITSPQGINGKIKIKSLSDFEERFTKPGK--RWIQKGNETPIEFELTHG 58
Query: 54 YRK--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME---T 108
++K + FI TF GI+N A L+ K+ K +L E+ T+L + +
Sbjct: 59 FKKPGKESFIITFKGINNRTQAENLKGQKILVKVDAI--PKLSHGEYHLTELINLNVKIS 116
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ Q G+V + N ++L I KN E LIPF K V V++++N IL+ P
Sbjct: 117 ENNQLHIIGKVINLSN-EKNNLLVIQLLKNNKE--VLIPFVKEIVPIVDIKKNFILLTP- 172
Query: 166 AAGL 169
+GL
Sbjct: 173 PSGL 176
>gi|221217854|ref|ZP_03589321.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 72a]
gi|221192160|gb|EEE18380.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 72a]
Length = 166
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN---RELRILKMYRKNKR 59
+ + I +++G+NG + S +NN D N VL N E++++ + K
Sbjct: 1 MFIKGVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNGSSVEVKVVDVNIKGNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F ID + L +L+ D L+E E++ L + K G+V
Sbjct: 61 LFLKFEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE++ + K F IPF + ++N QE I
Sbjct: 118 VAFFEYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|270290353|ref|ZP_06196578.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
gi|270281134|gb|EFA26967.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
Length = 192
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---------IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+A I T GL GE+ + +Y + P + L + + + + + +
Sbjct: 27 VAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPFKGMW 86
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+D+I+ + + + L K + + +EL + EF+ + + T G+ G+V
Sbjct: 87 LIQLAGLDSINEVEKFKGMML--KIAEDQLQELADGEFYQHKIIGL-TVIEDGQTLGKVK 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ ++G + ++ +K L+P+ VL+V+L ++ +
Sbjct: 144 EILSYGPNDVWVVERPGKKDLLLPYLNDVVLKVDLDKSIV 183
>gi|207093060|ref|ZP_03240847.1| hypothetical protein HpylHP_09749 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 184
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 41/182 (22%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--------------------YVLYSNDNR 46
++L+ IG + GLNG + + ++ P L + YV++S +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSRASSFKDYVIHSYE-- 61
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEE 105
+ KN F+ T I A EL +L L+ + K L+E EFF DL
Sbjct: 62 -------HAKNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVG 111
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQEN 158
+ + + + G+V + ++ T+ K FLIP+ F + E+ LQ+
Sbjct: 112 LSVVE-ENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDK 170
Query: 159 KI 160
KI
Sbjct: 171 KI 172
>gi|321469395|gb|EFX80375.1| hypothetical protein DAPPUDRAFT_304007 [Daphnia pulex]
Length = 541
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 21 GEVYIDSYANNPI--DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRD 78
VYI S+ + P+ D+NR + + + L+ +N A ++++ + L
Sbjct: 250 ARVYIGSFWDQPLRYDMNRRLFEAEEQDLFSDLQSLPRN----AALRKLNDLIKRARLAK 305
Query: 79 LKLY---AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN 135
+ Y A R+DF F D ++ E G+ + Q+ Y G +IK
Sbjct: 306 VHAYIIAALRKDFP-------TMFGKDAKKKELIKNLGQIYDQIQREYQISPGDFPDIKK 358
Query: 136 TMEKTFLIPFTKFAVLEVNLQE--NKILIDPIA 166
E+ FTKF L+ L E +++L + IA
Sbjct: 359 MQEQLVHHDFTKFPPLKPRLLEAVDRMLAEDIA 391
>gi|238756461|ref|ZP_04617768.1| Ribosome maturation factor rimM [Yersinia ruckeri ATCC 29473]
gi|238705310|gb|EEP97720.1| Ribosome maturation factor rimM [Yersinia ruckeri ATCC 29473]
Length = 186
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S N + Y + S + + + R ++ I
Sbjct: 18 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQVSGKWQHVELEDWKRHSQDLIIK 77
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+D+ +A+ L + ++ + EL+ D+++ DL + G G++ +
Sbjct: 78 VKDVDDRDAANLLTNCEIIVDSKQLP--ELDGDDYYWKDLMGCQVVTTTGYELGKIIDMM 135
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ ++ +K ++ F L+PF V++ V+L ++ +D
Sbjct: 136 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVD 181
>gi|210135308|ref|YP_002301747.1| 16S rRNA-processing protein RimM [Helicobacter pylori P12]
gi|210133276|gb|ACJ08267.1| 16S rRNA processing protein RimM [Helicobacter pylori P12]
Length = 184
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 41/182 (22%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--------------------YVLYSNDNR 46
++L+ IG + GLNG + + ++ P L + YV++S +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSFASSFKDYVIHSYE-- 61
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEE 105
+ KN F+ T I A EL +L L+ + K L+E EFF DL
Sbjct: 62 -------HAKNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVG 111
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQEN 158
+ + + + G+V + ++ T + K FLIP+ F + E+ LQ+
Sbjct: 112 LSVVE-ENEILGKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIQEILLQDK 170
Query: 159 KI 160
KI
Sbjct: 171 KI 172
>gi|312148287|gb|ADQ30946.1| 16S rRNA processing protein RimM [Borrelia burgdorferi JD1]
Length = 166
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S +NN D N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNVSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVNNNKK-LGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|15606340|ref|NP_213719.1| hypothetical protein aq_1057 [Aquifex aeolicus VF5]
gi|3914653|sp|O67156|RIMM_AQUAE RecName: Full=Ribosome maturation factor rimM
gi|2983543|gb|AAC07118.1| hypothetical protein aq_1057 [Aquifex aeolicus VF5]
Length = 166
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+++ V++ + T GL GE+ + YA + N +Y D + + + +
Sbjct: 2 MEEYVVIGKVLDTFGLEGELKVRPYAPPEVFENLEKVYLKRKGGDWVPFEVEWVDFIDDK 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G D+I + + KL+ ++ + EL E+E++ +L ME +GK G+V
Sbjct: 62 VIIKFKGYDSIDEVEQFKGAKLFLPKE--ELPELGEEEYYAYELVGMEVETDKGKKLGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V + G L + + L+PF VL+V+ + KI++
Sbjct: 120 ERVQDMGPYDALVLDK---ENLLVPFVSDIVLKVDKENKKIIV 159
>gi|261393038|emb|CAX50630.1| putative 16S rRNA processing protein RimM [Neisseria meningitidis
8013]
Length = 169
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRSYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTK 147
GA +L I + LIPF
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVS 148
>gi|152997770|ref|YP_001342605.1| 16S rRNA processing protein RimM [Marinomonas sp. MWYL1]
gi|209573568|sp|A6W1U1|RIMM_MARMS RecName: Full=Ribosome maturation factor rimM
gi|150838694|gb|ABR72670.1| 16S rRNA processing protein RimM [Marinomonas sp. MWYL1]
Length = 181
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELRILKMYRKNKR-F 60
++ +++ I + +G+ G V + S+ D + L + + L R R
Sbjct: 11 EQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVELSQGRLQGRGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A+ G + ++ + +Y + ELEE +++ + LE + ++G G+V
Sbjct: 71 VASVKGYTDRDQVKDICGMDVYIDAAELP--ELEEGDYYWSQLEGLRVITKEGVLLGKVS 128
Query: 121 GVYNFGAGSILEIKNTMEKTF-----LIPFTKFA-VLEVNLQENKILID 163
+ GA ++ ++ E +F LIP+ VL ++L++ ++++D
Sbjct: 129 QLMETGANDVIVVR-ACEGSFDREERLIPYAPGTYVLNIDLEQQEMVVD 176
>gi|88797969|ref|ZP_01113556.1| 16S rRNA-processing protein [Reinekea sp. MED297]
gi|88779166|gb|EAR10354.1| 16S rRNA-processing protein [Reinekea sp. MED297]
Length = 177
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-------DNRELRILKMY 54
+K + V++ I + +G+ G V + SY P+D R + Y + D + + K
Sbjct: 4 LKPEDYVVLGNISSVYGIKGWVKVYSY-TEPMD--RILEYGSWTLRKGQDLILVEVDKGR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
K +A G+D+ A + ++ + EL E +++ +LE + +
Sbjct: 61 SHGKGMVAHLKGVDDREVAKQYSGYEICVPQDRLP--ELPEGDYYWYELEGLAVVTTKDV 118
Query: 115 YWGQVCGVYNFGAGS---ILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
G V Y AGS +L +K + LIP+ VL+V+L+ +IL+D
Sbjct: 119 RLGVVD--YLMSAGSSNDVLVVKGDQHCADRRERLIPYVDQFVLDVSLEAGRILVD 172
>gi|224584528|ref|YP_002638326.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224469055|gb|ACN46885.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 185
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 17 VVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ LEE +++ DL + +G G+V +
Sbjct: 77 LKGVDDRDAANLLTNCEIVVDSSQLP--ALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L IK ++ F L+PF V+ +V L I +D
Sbjct: 135 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVVLATRTIEVD 180
>gi|170017562|ref|YP_001728481.1| RimM protein, required for 16S rRNA processing [Leuconostoc citreum
KM20]
gi|209573566|sp|B1MZT5|RIMM_LEUCK RecName: Full=Ribosome maturation factor rimM
gi|169804419|gb|ACA83037.1| RimM protein, required for 16S rRNA processing [Leuconostoc citreum
KM20]
Length = 172
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-----FIATF 64
+ TI THG+ GEV I + + D + + + + ++ R ++ F
Sbjct: 9 VGTIVNTHGIRGEVKIMAITDFAADRFKKGAALQIETKQGFVPVTVQSSRLHKNMWLVLF 68
Query: 65 SGIDNIHSASELR--DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ NI+ + + D+ +Y + + E L +DE++ ++ + G+ G V +
Sbjct: 69 EGVTNINEIEKYKTNDIYVYGEAR----EALGDDEYYYDEIIDSRVVSLSGEAIGVVSEI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K + LIP V V++ I ID + L+
Sbjct: 125 MTTGANDVWVVKRPGQSDALIPMIDDVVKSVDVANKLITIDVLEGLLD 172
>gi|59798656|sp|Q65VG2|RIMM_MANSM RecName: Full=Ribosome maturation factor rimM
gi|52306548|gb|AAU37048.1| RimM protein [Mannheimia succiniciproducens MBEL55E]
Length = 178
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYR 55
M K+D+ + + +G+T+G+ G + I S N D + L D + L+ ++
Sbjct: 1 MNKMDRQRIETVGKLGSTYGIRGWLRIYSSTENAESIFDYQPWFLKIKDQWQAIELETWK 60
Query: 56 K-NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I I++ +A L ++++ F LEE +F+ DL + + QG
Sbjct: 61 HHNHELIVKLKNINDRETAQTLANVEIGVDLSVFP--ALEEGDFYWHDLIGCQVVNLQGY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G V + G+ +L ++ + F LIPF V++ V+L I +D
Sbjct: 119 AMGTVSEMMETGSNDVLVVRANAKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVD 173
>gi|332673945|gb|AEE70762.1| 16S rRNA processing protein RimM [Helicobacter pylori 83]
Length = 184
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 27/175 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V Y++ +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSAAPLNAFSYASSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G+V + A S++E + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQIDYFLVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDQKI 172
>gi|121634386|ref|YP_974631.1| 16S rRNA-processing protein [Neisseria meningitidis FAM18]
gi|166226459|sp|A1KSK0|RIMM_NEIMF RecName: Full=Ribosome maturation factor rimM
gi|120866092|emb|CAM09830.1| putative 16S rRNA processing protein [Neisseria meningitidis FAM18]
gi|325127718|gb|EGC50629.1| 16S rRNA processing protein RimM [Neisseria meningitidis N1568]
gi|325131956|gb|EGC54656.1| 16S rRNA processing protein RimM [Neisseria meningitidis M6190]
gi|325137627|gb|EGC60204.1| 16S rRNA processing protein RimM [Neisseria meningitidis ES14902]
gi|325141854|gb|EGC64299.1| 16S rRNA processing protein RimM [Neisseria meningitidis 961-5945]
Length = 169
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTVSVTLEAGKVVNSELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPF 145
GA +L I + LIPF
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPF 146
>gi|212639587|ref|YP_002316107.1| 16S rRNA-processing protein RimM [Anoxybacillus flavithermus WK1]
gi|212561067|gb|ACJ34122.1| RimM protein, required for 16S rRNA processing [Anoxybacillus
flavithermus WK1]
Length = 174
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKM--YRKNKRF-IAT 63
+ I THG+ GEV + S +A + + +N+ +K+ +R +K F + T
Sbjct: 9 VGKIVNTHGIRGEVRVISRTDFAEERYKIGNVLYIFMENKPPVEVKVASHRVHKSFDLLT 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G DNI+ + + K + + + L E E++ ++ G+ G++ +
Sbjct: 69 FEGYDNINLVEPFKGAII--KIPETQLQPLNEGEYYFHEIIGCTVVTEDGEPIGEIKEIL 126
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + +K LIP+ V +V++ ENK + + GL
Sbjct: 127 TPGANDVWVVKRKKGGDVLIPYIDDVVKQVDV-ENKTITIHVMEGL 171
>gi|262363071|gb|ACY59792.1| 16S rRNA processing protein [Yersinia pestis D106004]
Length = 169
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 14 GTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
G+T+G+ G + + S N + Y + + + + + R ++ I G+D+
Sbjct: 7 GSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIKVKGVDD 66
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+A+ L + ++ LEED+++ DL + G G++ + G+
Sbjct: 67 REAANLLTNCEIIVDSTQLP--ALEEDDYYWKDLMGCQVVTTTGYELGKIIDMMETGSND 124
Query: 130 ILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 125 VMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 164
>gi|238758268|ref|ZP_04619447.1| Ribosome maturation factor rimM [Yersinia aldovae ATCC 35236]
gi|238703598|gb|EEP96136.1| Ribosome maturation factor rimM [Yersinia aldovae ATCC 35236]
Length = 182
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S N + Y + + + + R ++ I
Sbjct: 14 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+D+ +A+ L + ++ + LEED+++ DL + G G++ +
Sbjct: 74 VKDVDDRDAANLLTNCEIIVDSKQLP--TLEEDDYYWKDLMGCQVVTTTGYELGKIIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ +K ++ F L+PF V+ +V+L ++ +D
Sbjct: 132 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVD 177
>gi|304399180|ref|ZP_07381047.1| 16S rRNA processing protein RimM [Pantoea sp. aB]
gi|304353234|gb|EFM17614.1| 16S rRNA processing protein RimM [Pantoea sp. aB]
Length = 182
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 14 IVLGKMGAAYGIRGWLKVFSSTEDAESIFNYQPWFIQRAGKWQQVELEGWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI++ +A++L + ++ LEE +++ DL + + +G G+V +
Sbjct: 74 VKGIEDRDAAAQLTNCEIQVDSTQLP--SLEEGDYYWKDLMGCQVVNLEGYEMGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIRKVDLSTGVIEVD 177
>gi|308177296|ref|YP_003916702.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
gi|307744759|emb|CBT75731.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
Length = 180
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKR-FIATF 64
+A IG HG+ GEV + P + ++ + L + K R NK + +F
Sbjct: 5 VARIGKPHGIRGEVTAQVMTDTPDERFTSGEELIVVDGPVKTLTV-KSARWNKTILLLSF 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
I++ + A LR +L D +E E + DE++ +L +++ G+ G + +
Sbjct: 64 KEINDRNQAETLRGARLEI---DVSEEPEDDSDEWYEHELLDLKVM-LDGEQVGVITALR 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A +L +N+ + +PF V E++ + ++I P A L
Sbjct: 120 TNPAQDLLVFENSEGQEIYLPFVDEFVPEIDPEAGIVVITPPAGLLT 166
>gi|116333580|ref|YP_795107.1| RimM protein, required for 16S rRNA processing [Lactobacillus
brevis ATCC 367]
gi|122269733|sp|Q03RU6|RIMM_LACBA RecName: Full=Ribosome maturation factor rimM
gi|116098927|gb|ABJ64076.1| 16S rRNA processing protein RimM [Lactobacillus brevis ATCC 367]
Length = 172
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/161 (17%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP-----IDLNRYVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ TI THG+ GEV + + + P + Y + + + + R++K F +
Sbjct: 6 VGTIVNTHGIKGEVRVVATTDFPESRFAVGSTLYAFQKDQATPVTLTVASVRQHKNFYLL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G +I+ + L + + +L E++ + ++ G+ G++ +
Sbjct: 66 SFEGKPSINDVEIFKQSTLKVTDNELESNDLRPGEYYYHQIVGLDAVTVDGENLGKIKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + + L+P + V+L + K++++
Sbjct: 126 LSPGANDVWVVARPGKSDLLLPKIDQVIKRVDLDQGKVIVE 166
>gi|242240275|ref|YP_002988456.1| 16S rRNA-processing protein RimM [Dickeya dadantii Ech703]
gi|242132332|gb|ACS86634.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech703]
Length = 182
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFIAT 63
+++ IG+T+G+ G + + S A++ D + + + + ++ +R N+ I
Sbjct: 14 IVLGKIGSTYGIRGWLKVFSSTEEADSIFDYQPWFIQNKGQWQQVEIESWRYHNQSLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+D+ +A+ L + ++ EL++ EF+ DL + G G+V +
Sbjct: 74 IKHVDDRDAANLLTNCEIVVDSTQLP--ELDDGEFYWKDLIGCDVVTVSGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L ++ ++ + LIPF V++ ++L +I +D
Sbjct: 132 ETGSNDVLVVRANLKDAYGVKERLIPFLNEQVIKHIDLSARRIEVD 177
>gi|316985245|gb|EFV64196.1| 16S rRNA processing protein RimM [Neisseria meningitidis H44/76]
gi|325200722|gb|ADY96177.1| 16S rRNA processing protein RimM [Neisseria meningitidis H44/76]
Length = 160
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F EEDE++ TDL M ++
Sbjct: 52 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVL 109
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L I + LIPF + V+ I D
Sbjct: 110 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 155
>gi|261839877|gb|ACX99642.1| 16S rRNA processing protein RimM [Helicobacter pylori 52]
Length = 184
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 27/175 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V ++ +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVRVAPLNAFFCASSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I + A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTLEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G+V + A S++E + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQIDYFLVETARSLIE--KGLAKIFLIPYRDFYIKEILLQDKKI 172
>gi|254804474|ref|YP_003082695.1| 16S rRNA processing protein [Neisseria meningitidis alpha14]
gi|254668016|emb|CBA04386.1| 16S rRNA processing protein [Neisseria meningitidis alpha14]
Length = 169
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTK 147
GA +L I + LIPF
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVS 148
>gi|317011345|gb|ADU85092.1| 16S rRNA-processing protein RimM [Helicobacter pylori SouthAfrica7]
Length = 181
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----------NDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V S + +E I +
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKEYTIHSYEHA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L+E EFF DL + + + +
Sbjct: 61 KNLLFLET---IHTPERARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVVE-ENE 116
Query: 115 YWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKI 160
G++ + ++ T + K FLIP+ F V E+ LQ+ KI
Sbjct: 117 ILGKIIEIQRISHTDYFMVETTPSLVEKGLAKIFLIPYRDFYVKEILLQDKKI 169
>gi|161511002|ref|YP_087633.2| 16S rRNA-processing protein [Mannheimia succiniciproducens MBEL55E]
Length = 175
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRK-NKRFIATFS 65
+ +G+T+G+ G + I S N D + L D + L+ ++ N I
Sbjct: 9 VGKLGSTYGIRGWLRIYSSTENAESIFDYQPWFLKIKDQWQAIELETWKHHNHELIVKLK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I++ +A L ++++ F LEE +F+ DL + + QG G V +
Sbjct: 69 NINDRETAQTLANVEIGVDLSVFP--ALEEGDFYWHDLIGCQVVNLQGYAMGTVSEMMET 126
Query: 126 GAGSILEIKNTMEKTF-----LIPFTKFAVLE-VNLQENKILID 163
G+ +L ++ + F LIPF V++ V+L I +D
Sbjct: 127 GSNDVLVVRANAKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVD 170
>gi|206895320|ref|YP_002247049.1| hypothetical protein COPRO5265_0701 [Coprothermobacter
proteolyticus DSM 5265]
gi|206737937|gb|ACI17015.1| hypothetical protein COPRO5265_0701 [Coprothermobacter
proteolyticus DSM 5265]
Length = 160
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM-YRKNKRFIATFSG 66
+ + G GL GE+Y + Y + I Y + L++ ++ + RF+ G
Sbjct: 6 ICLGRFGKVFGLKGEIYFNLYGSEDILRTTDEFYLENGTLLKVERLGVGPDGRFVVKLLG 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
D S + K+Y K + K D + ++L EM+ GQV
Sbjct: 66 YDTPESVETFVNQKVYVKGRSGKG-----DTYTTSELLEMDVI-----VNGQV------- 108
Query: 127 AGSILEIKNTMEKTFLI----------PFTKFAV 150
G +L+++ T E FL+ PFT+ A+
Sbjct: 109 VGRVLDLQGTDEAPFLLLDINGELRRAPFTREAL 142
>gi|302874780|ref|YP_003843413.1| 16S rRNA processing protein RimM [Clostridium cellulovorans 743B]
gi|307690604|ref|ZP_07633050.1| 16S rRNA-processing protein RimM [Clostridium cellulovorans 743B]
gi|302577637|gb|ADL51649.1| 16S rRNA processing protein RimM [Clostridium cellulovorans 743B]
Length = 164
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 2/156 (1%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
+ I HGL GE + ++ N+ +E + + ++ I GID
Sbjct: 7 VGIITNVHGLKGEFKVKPLTDDIRRFNKLKKVFIKGKEYNVSWCKLQPQKVIVKVEGIDT 66
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+ A ++ + R++ +L E +F DL D GK G + V G+
Sbjct: 67 VEEAMRYKNEYMQVDRENAI--KLPEGRYFVADLIGCNVVDHNGKDEGVIKDVIFTGSND 124
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ + LIP V +++++ I I P+
Sbjct: 125 VYWSIREGREDLLIPVIDPVVDTIDIEKRVITIQPV 160
>gi|321315368|ref|YP_004207655.1| 16S rRNA-processing protein RimM [Bacillus subtilis BSn5]
gi|320021642|gb|ADV96628.1| 16S rRNA-processing protein RimM [Bacillus subtilis BSn5]
Length = 174
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + + + Y+ N + + + +R +K+F +
Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGHNEPVEVTVNTHRLHKQFHLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F N++ EL++ + K + + EL E EF+ ++ E F +G+ G+V +
Sbjct: 68 QFKERQNLNEVEELKNAII--KVPEEELGELNEGEFYFHEIIGCEVFTEEGELIGKVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + I +K LIP+ + V ++++E KI I+
Sbjct: 126 LTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIE 166
>gi|326382874|ref|ZP_08204564.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
gi|326198464|gb|EGD55648.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
Length = 175
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 16 THGLNGEVYIDSYANNPIDLNRYVLYS-----------NDNRELRILKMYRKNKRFIATF 64
THG+ GEV +D ++P D R+ + + E + R + +
Sbjct: 11 THGIRGEVVVDIRTDDPAD--RFAVGTRLRGRAARNAGGGETEYEVTAARMHAGRLLLSL 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + A LR D D + DEF++ +LE + G G V V +
Sbjct: 69 ADVRGREEADRLRGTLFVIDAADV-DSGDDPDEFYDHELEGLPVSTVDGVEVGVVKEVLH 127
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI-----LIDPI 165
G +L + T + L+PF + V V + +I LI+PI
Sbjct: 128 LPGGELLSVTTTDGREVLVPFVREIVPTVTREGIEIDPPDGLIEPI 173
>gi|209573744|sp|A8L5A4|RIMM_FRASN RecName: Full=Ribosome maturation factor rimM
Length = 218
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
+++ DL + G G+V V + G IL I +L+PF + V V+
Sbjct: 144 WWDRDLVGLHARTPAGDVLGEVVDVIHSPGGEILAIGRPEGGEYLVPFVREIVPTVDPAA 203
Query: 158 NKILIDP 164
I++DP
Sbjct: 204 GHIVVDP 210
>gi|261346217|ref|ZP_05973861.1| 16S rRNA processing protein RimM [Providencia rustigianii DSM 4541]
gi|282565523|gb|EFB71058.1| 16S rRNA processing protein RimM [Providencia rustigianii DSM 4541]
Length = 182
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLY-SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S +A + D + + S + + I NK I
Sbjct: 14 IVLGKLGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRSGQWQHIEIEDWKHHNKDIIVK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+++ +A+ L + ++ ELE +E++ DL G G V +
Sbjct: 74 LKGVEDRDAATLLTNFEIAVDSTQLP--ELENNEYYWKDLMGCHVVTLDGYDLGTVVDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVLE 152
G+ +L IK ++ F L+PF V++
Sbjct: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165
>gi|158313002|ref|YP_001505510.1| 16S rRNA-processing protein RimM [Frankia sp. EAN1pec]
gi|158108407|gb|ABW10604.1| 16S rRNA processing protein RimM [Frankia sp. EAN1pec]
Length = 225
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
+++ DL + G G+V V + G IL I +L+PF + V V+
Sbjct: 151 WWDRDLVGLHARTPAGDVLGEVVDVIHSPGGEILAIGRPEGGEYLVPFVREIVPTVDPAA 210
Query: 158 NKILIDP 164
I++DP
Sbjct: 211 GHIVVDP 217
>gi|317178550|dbj|BAJ56338.1| 16S rRNA processing protein [Helicobacter pylori F30]
Length = 184
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRILKMYRKN 57
++L+ IG + GLNG + + ++ P L + V + + + I+ Y
Sbjct: 4 MLLVGRIGKSIGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCASSFKEYIIHSYEHA 63
Query: 58 KRFIATFSGIDNIHS---ASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQG 113
K + ++ IH+ A EL +L L+ + K L++ EFF DL + + +
Sbjct: 64 KNLLF----LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-EN 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ G+V + ++ T + K FLIP+ F + E+ LQ+ KI +
Sbjct: 119 EVLGKVIEIQRISQIDYFMVETTRNLVEKGLAKIFLIPYRDFYIKEIFLQDQKITTNNAK 178
Query: 167 AGLNNT 172
L N+
Sbjct: 179 TLLENS 184
>gi|269140192|ref|YP_003296893.1| 16S rRNA-processing protein [Edwardsiella tarda EIB202]
gi|267985853|gb|ACY85682.1| 16S rRNA-processing protein [Edwardsiella tarda EIB202]
gi|304560023|gb|ADM42687.1| 16S rRNA processing protein RimM [Edwardsiella tarda FL6-60]
Length = 181
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
V++ +G+ +G+ G + + S A + D + + L+ +R N+ ++
Sbjct: 13 VVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAIELESWRSHNQDWVVK 72
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A+ + + ++ L+E +++ DL + G G+V +
Sbjct: 73 IKGIDDRDAANAMVNREIIVDESQMP--SLDEGDYYWKDLMGCQVVTVSGYALGKVTAMM 130
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ +L +K ++ F LIPF V+ +V+L I +D
Sbjct: 131 ETGSNDVLVVKANLKDAFGMKERLIPFLDGQVIKKVDLTAKSIEVD 176
>gi|146318473|ref|YP_001198185.1| 16S rRNA-processing protein RimM [Streptococcus suis 05ZYH33]
gi|253751601|ref|YP_003024742.1| 16S rRNA processing protein [Streptococcus suis SC84]
gi|253753503|ref|YP_003026644.1| 16S rRNA processing protein [Streptococcus suis P1/7]
gi|253755672|ref|YP_003028812.1| 16S rRNA processing protein [Streptococcus suis BM407]
gi|166226483|sp|A4VUJ6|RIMM_STRSY RecName: Full=Ribosome maturation factor rimM
gi|145689279|gb|ABP89785.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
05ZYH33]
gi|251815890|emb|CAZ51504.1| 16S rRNA processing protein [Streptococcus suis SC84]
gi|251818136|emb|CAZ55930.1| 16S rRNA processing protein [Streptococcus suis BM407]
gi|251819749|emb|CAR45623.1| 16S rRNA processing protein [Streptococcus suis P1/7]
gi|292558256|gb|ADE31257.1| RimM [Streptococcus suis GZ1]
gi|319758040|gb|ADV69982.1| 16S rRNA-processing protein RimM [Streptococcus suis JS14]
Length = 172
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRI---LKMYRKNKRF-IA 62
+ I T GL GE+ + S +A + +D + + + +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDKDQFAMEVEIASHRKAKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D LE+ EF+ ++ ++ ++ GQ+ +
Sbjct: 66 KFKGMYHINDIEKYKGFSLKIAEENLTD--LEDGEFYYHEIIGLDVYEND-ILIGQIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GA + +K +K L+P+ VL +++ N++
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV 160
>gi|90414890|ref|ZP_01222855.1| 16S rRNA-processing protein [Photobacterium profundum 3TCK]
gi|90324004|gb|EAS40598.1| 16S rRNA-processing protein [Photobacterium profundum 3TCK]
Length = 177
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIA 62
LV++ +G T+G+ G + + SY + Y + + + ++I + + +A
Sbjct: 8 LVVVGKLGATYGIKGWLKVFSYTEQSESIFAYQPWLIKVKGEWKPIQIESWKKHGQGIVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D A + ++ L +EF+ +L M +G G+V +
Sbjct: 68 KLEGLDIREDAQIFTNAEVAVHADQLP--ALSGEEFYWRELYGMSVVTTEGYDLGKVTDI 125
Query: 123 YNFGAGSILEIKNTMEKTF-----LIPF 145
G+ +L +K ++ F LIPF
Sbjct: 126 LETGSNDVLVVKANLKDAFGQKERLIPF 153
>gi|281602017|gb|ADA75001.1| 16S rRNA-processing protein rimM [Shigella flexneri 2002017]
Length = 164
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGID 68
+G+++G+ G + + S + + Y + + +++++ N+ I G+D
Sbjct: 1 MGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVD 60
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A+ L + ++ +LEE +++ DL + +G G+V + G+
Sbjct: 61 DRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSN 118
Query: 129 SILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
+L IK ++ F L+PF V+ +V+L I +D
Sbjct: 119 DVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 159
>gi|157148121|ref|YP_001455440.1| 16S rRNA-processing protein RimM [Citrobacter koseri ATCC BAA-895]
gi|157085326|gb|ABV15004.1| hypothetical protein CKO_03931 [Citrobacter koseri ATCC BAA-895]
Length = 183
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V +
Sbjct: 75 LKGVDDRDSANLLTNCEIVVDSSQLP--ALEDGSYYWKDLMGCQVVTTEGYDLGKVVDMM 132
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L I +D
Sbjct: 133 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 178
>gi|54310150|ref|YP_131170.1| 16S rRNA-processing protein RimM [Photobacterium profundum SS9]
gi|59798725|sp|Q6LMV8|RIMM_PHOPR RecName: Full=Ribosome maturation factor rimM
gi|46914589|emb|CAG21368.1| putative 16S rRNA processing protein RimM [Photobacterium profundum
SS9]
Length = 177
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIA 62
LV++ +G T+G+ G + + SY + Y + + + ++I + + +A
Sbjct: 8 LVVVGKLGATYGIKGWLKVFSYTEQSESIFAYQPWLIKVKGEWKPIQIESWKKHGQGMVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D A + ++ L +EF+ +L M +G G+V +
Sbjct: 68 KLEGLDIREDAQIFTNAEVAVHADQLP--ALSGEEFYWRELYGMSVVTTEGYDLGKVTDI 125
Query: 123 YNFGAGSILEIKNTMEKTF-----LIPF 145
G+ +L +K ++ F LIPF
Sbjct: 126 LETGSNDVLVVKANLKDAFGQKERLIPF 153
>gi|208435044|ref|YP_002266710.1| 16S rRNA processing protein [Helicobacter pylori G27]
gi|208432973|gb|ACI27844.1| 16S rRNA processing protein [Helicobacter pylori G27]
Length = 184
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 41/182 (22%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--------------------YVLYSNDNR 46
++L+ IG + GLNG + + ++ P L + YV++S +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSRASSFKDYVIHSYE-- 61
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEE 105
+ KN F+ T I A EL +L L+ + K L+E EFF DL
Sbjct: 62 -------HAKNLLFLET---IHTPEKAKELTNLGLFMSEVESKKLCVLKEGEFFYCDLVG 111
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQEN 158
+ + + + G+V + ++ T + K FLIP+ F + E+ LQ+
Sbjct: 112 LSVVE-ENEILGKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIKEILLQDK 170
Query: 159 KI 160
KI
Sbjct: 171 KI 172
>gi|317177897|dbj|BAJ55686.1| 16S rRNA processing protein [Helicobacter pylori F16]
Length = 184
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V Y++ +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSYASSFKEYIIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I + A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTLEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKI 160
G+V + ++ + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQIDYFLVETARSLVGKGLAKIFLIPYRDFYIKEILLQDQKI 172
>gi|188995016|ref|YP_001929268.1| 16S rRNA-processing protein RimM [Porphyromonas gingivalis ATCC
33277]
gi|188594696|dbj|BAG33671.1| probable 16S rRNA processing protein [Porphyromonas gingivalis ATCC
33277]
Length = 175
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKM-- 53
M+ LD L + +G HG+ GE N + + L+ + R EL L +
Sbjct: 1 MIDLDSLEHIGVLGKPHGVQGE------CNARLTADLSTLFEEEERLFLFFELDALPVPF 54
Query: 54 ----YRKNKRFIAT--FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
YR+ I F+GI++ + L+ +R+ F + +E F
Sbjct: 55 RLIGYREKTDDITLLRFAGIESKEEMERYTGVSLFMERRYFDTDSIE---FTWEHFIGFT 111
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
FDR+G++ G + V +L I K L+P + + E+++ K+
Sbjct: 112 VFDREGRFVGTIDDVDESTLNVLLSITTPEGKELLLPVAEDLLEEIDVPNRKL 164
>gi|223932095|ref|ZP_03624099.1| 16S rRNA processing protein RimM [Streptococcus suis 89/1591]
gi|302023714|ref|ZP_07248925.1| 16S rRNA-processing protein RimM [Streptococcus suis 05HAS68]
gi|330832750|ref|YP_004401575.1| 16S rRNA processing protein [Streptococcus suis ST3]
gi|223899076|gb|EEF65433.1| 16S rRNA processing protein RimM [Streptococcus suis 89/1591]
gi|329306973|gb|AEB81389.1| 16S rRNA processing protein [Streptococcus suis ST3]
Length = 172
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK K F I F G+ +I+ + + L ++ D LE+ EF+ ++ ++ ++
Sbjct: 56 HRKAKNFDIIKFKGMYHINDIEKYKGFSLKIAEENLTD--LEDGEFYYHEIIGLDVYEND 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GQ+ + GA + +K +K L+P+ VL +++ N++
Sbjct: 114 -ILIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV 160
>gi|298492126|ref|YP_003722303.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
0708]
gi|298234044|gb|ADI65180.1| single-stranded-DNA-specific exonuclease RecJ ['Nostoc azollae'
0708]
Length = 696
Score = 35.8 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 95 EDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLI-PFTKFAVLEV 153
E F L + F+ + + CG+Y AGS L IKNT K +I P K +L +
Sbjct: 603 EQLFITPTLSKRTNFEYNERQY--TCGIYQNSAGSELRIKNTEGKVLVIQPENKLGLLGI 660
Query: 154 NLQENKILIDPIAAGLNNTTMKNPQYD 180
N ++ K + PQYD
Sbjct: 661 NREDAK-----------KVDLSLPQYD 676
>gi|172045629|sp|A8ANE1|RIMM_CITK8 RecName: Full=Ribosome maturation factor rimM
Length = 182
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V +
Sbjct: 74 LKGVDDRDSANLLTNCEIVVDSSQLP--ALEDGSYYWKDLMGCQVVTTEGYDLGKVVDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L I +D
Sbjct: 132 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 177
>gi|307706338|ref|ZP_07643150.1| 16S rRNA processing protein RimM [Streptococcus mitis SK321]
gi|307618256|gb|EFN97411.1| 16S rRNA processing protein RimM [Streptococcus mitis SK321]
Length = 172
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 50 ILKMYRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
I+ +RK K F I F + +I++ + + L +D D L++ EF+ ++ +E
Sbjct: 52 IIASHRKQKNFDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEV 109
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ G + + GA + +K ++ L+P+ VL V++ N++ ++ I G
Sbjct: 110 YEGDN-LIGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVE-ILEG 167
Query: 169 LNN 171
L++
Sbjct: 168 LDD 170
>gi|325197804|gb|ADY93260.1| 16S rRNA processing protein RimM [Neisseria meningitidis G2136]
gi|325203684|gb|ADY99137.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240355]
Length = 160
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F EEDE++ TDL M ++
Sbjct: 52 NSELQVKFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVL 109
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
G+V + GA +L I + LIPF
Sbjct: 110 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVS 139
>gi|78188774|ref|YP_379112.1| 16S rRNA processing protein RimM [Chlorobium chlorochromatii CaD3]
gi|109893007|sp|Q3ASF6|RIMM_CHLCH RecName: Full=Ribosome maturation factor rimM
gi|78170973|gb|ABB28069.1| 16S rRNA processing protein RimM [Chlorobium chlorochromatii CaD3]
Length = 167
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 8/144 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRE-LRILKMYRKNKRF 60
+L L I GL GEV ++ + P + +V S + +++ K
Sbjct: 2 ELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F GID A+ L L+ ++ + E+ + ++ M D GK +G V
Sbjct: 62 WLFFEGIDTFEQATTLVGFSLFITEEELAPQP--ENHVYRHEIVGMRVVDGNGKLFGTVT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIP 144
++N A + E++ KT L+P
Sbjct: 120 DIFNMPAHDVYEVQ-VEGKTVLLP 142
>gi|325283491|ref|YP_004256032.1| Ribosome maturation factor rimM [Deinococcus proteolyticus MRP]
gi|324315300|gb|ADY26415.1| Ribosome maturation factor rimM [Deinococcus proteolyticus MRP]
Length = 199
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 18 GLNGEV--YIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASE 75
GL G V ++ A +DL R + +LR ++ SGI+ +A++
Sbjct: 22 GLKGGVKLFVLGEAEQLVDLPRVWVEGWGWLKLRRAELLYPG--IALHLSGIETREAAAD 79
Query: 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN 135
LR +YA + LEE ++ L + D G++ G+V V + G +L + +
Sbjct: 80 LRGANVYAHDDELP--ALEEGSYYYHQLRGLPVLDSAGEHLGEVVDVMDMGHQDLLVVSH 137
Query: 136 TMEKTFLIPFTKFAVLEVNLQENKILID 163
++ +V LQ +LI+
Sbjct: 138 DYGES-----------QVPLQAPYVLIE 154
>gi|322382563|ref|ZP_08056443.1| 16S rRNA processing-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153479|gb|EFX45884.1| 16S rRNA processing-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 169
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ I THGL GE+ I + + P V + I FI
Sbjct: 4 VGAIANTHGLRGELKIIPHTDFAEERFAPGSKLMAVDLKGKEMPVEIASARLHKNAFIVK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F +I+ L+ L + + ++LEE E++ ++ F G+ G + +
Sbjct: 64 FKQFHHINEVEPLKGGLLKVEEKYL--QKLEEGEYYFHEILGCTAFTMDGEELGTIKDIL 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + + K L+P+ + V EV++ +NKI+ + GL
Sbjct: 122 TPGANHVWVVSGPKYKQILLPYIEDVVKEVDV-DNKIVRVKLLEGL 166
>gi|16078665|ref|NP_389484.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309477|ref|ZP_03591324.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313802|ref|ZP_03595607.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318726|ref|ZP_03600020.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322997|ref|ZP_03604291.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|3914642|sp|O31740|RIMM_BACSU RecName: Full=Ribosome maturation factor rimM
gi|2633974|emb|CAB13475.1| 16S rRNA processing protein [Bacillus subtilis subsp. subtilis str.
168]
gi|291484153|dbj|BAI85228.1| 16S rRNA processing protein [Bacillus subtilis subsp. natto
BEST195]
Length = 174
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKRF-IA 62
+ I THG+ GEV + S + + + Y+ N + + + +R +K+F +
Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTHRLHKQFHLL 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F N++ EL++ + K + + EL E EF+ ++ E F +G+ G+V +
Sbjct: 68 QFKERQNLNEVEELKNAII--KVPEEELGELNEGEFYFHEIIGCEVFTEEGELIGKVKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + I +K LIP+ + V ++++E KI I+
Sbjct: 126 LTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIE 166
>gi|237753412|ref|ZP_04583892.1| 16S:rRNA processing protein RimM [Helicobacter winghamensis ATCC
BAA-430]
gi|229375679|gb|EEO25770.1| 16S:rRNA processing protein RimM [Helicobacter winghamensis ATCC
BAA-430]
Length = 173
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
+A IG + G G+V + ++ P +Y + +L L+ Y K IA F I++
Sbjct: 3 VAKIGRSLGFKGDVVLHLLSDFPESFKAGNVYHSQVGDLT-LESYSLQKS-IAKFQEINS 60
Query: 70 IHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A ++ + LY+ +++ K++ +LE++ FF +L + G+ G++ + F
Sbjct: 61 KEEAKQIVNCILYSTQEESKEQCKLEDNAFFWFELIGGLIVES-GEVLGEIGEIDRFCNQ 119
Query: 129 SILEIKNT-------MEKTFLIPFTKFAVLEV 153
L IK + K+FLIP+ +L+V
Sbjct: 120 DYLHIKTNSVLVAQGLPKSFLIPYNTRYILKV 151
>gi|237729524|ref|ZP_04560005.1| 16S rRNA-processing protein [Citrobacter sp. 30_2]
gi|226908130|gb|EEH94048.1| 16S rRNA-processing protein [Citrobacter sp. 30_2]
Length = 185
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 17 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIK 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V +
Sbjct: 77 LKGVDDRDSANLLTNCEIVVDSSQLP--ALEDGSYYWKDLMGCQVVTTEGYDLGKVVDMM 134
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTKFAVL-EVNLQENKILID 163
G+ ++ IK ++ F L+PF V+ +V+L I +D
Sbjct: 135 ETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVD 180
>gi|56707321|ref|YP_169217.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669791|ref|YP_666348.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC198]
gi|224456385|ref|ZP_03664858.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254369999|ref|ZP_04986006.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC033]
gi|254874157|ref|ZP_05246867.1| rimM, 16S rRNA-processing protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|67461299|sp|Q5NIC5|RIMM_FRATT RecName: Full=Ribosome maturation factor rimM
gi|123063602|sp|Q14JS8|RIMM_FRAT1 RecName: Full=Ribosome maturation factor rimM
gi|56603813|emb|CAG44784.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320124|emb|CAL08167.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis FSC198]
gi|151568244|gb|EDN33898.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC033]
gi|254840156|gb|EET18592.1| rimM, 16S rRNA-processing protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158447|gb|ADA77838.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis NE061598]
Length = 169
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I+N +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ A +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETDANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|126322954|ref|XP_001364193.1| PREDICTED: similar to plectin 11 isoform 1 [Monodelphis domestica]
Length = 4690
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TFSG+ +ASEL + K+ ++ Q E+L+E + DL E + R + + G+
Sbjct: 3445 TFSGLRTPVAASELLESKVISRAQF---EQLKEGKKSVKDLSETDLVKRFLQGTDSIAGI 3501
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
Y L + M++ L P T +LE +IDPI
Sbjct: 3502 YVEETKEKLTLYQAMKRNLLRPGTAIVLLEAQ-AATGFMIDPI 3543
>gi|21672656|ref|NP_660723.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25009062|sp|Q8K9F5|RIMM_BUCAP RecName: Full=Ribosome maturation factor rimM
gi|21623292|gb|AAM67934.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 175
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL---KMYRKNKRFIATF 64
+L+ IG +G+ G V S+ N + Y + ++ I+ K + N FI
Sbjct: 12 ILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKWKKHNNNFIIHI 71
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
I + + S+ +L+++ + L+EDE++ D+ + + F+ + +Y G+V +
Sbjct: 72 ENILDRSTVSKFTNLEIFIDKSIL--PILKEDEYYWNDVIDCKVFNSRKEYLGKVINL 127
>gi|271501690|ref|YP_003334716.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech586]
gi|270345245|gb|ACZ78010.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech586]
Length = 182
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL----RILKMYRKNKRFIAT 63
V++ +G+T+G+ G + + S + + Y + N+ L I N+ +
Sbjct: 14 VVLGKLGSTYGIKGWLRVFSSTEDTESIFDYQPWFIRNKGLWQPIEIESWRHHNQDLVIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
ID+ +A+ L + ++ EL+E +++ DL + G G+V +
Sbjct: 74 IKDIDDREAANLLTNCEIVVDSAQLP--ELDEGDYYWKDLIGCDVVTVGGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNTMEKTF-----LIPF-TKFAVLEVNLQENKILID 163
G+ +L ++ ++ + LIPF T+ + V+L ++I +D
Sbjct: 132 ETGSNDVLVVRANLKDAYGVKERLIPFLTEQVIKHVDLSTHRIEVD 177
>gi|312898906|ref|ZP_07758294.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
gi|310620068|gb|EFQ03640.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
Length = 166
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 2/155 (1%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
+ I HG+ G+V + + P D + I + + F GI +
Sbjct: 9 IGQIVAPHGVRGDVRVYPDTDFPERFLTMKYAYIDGVKYEITDARFHKRVVLMKFVGIHD 68
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+ L +L RQD LEE + + D+ FD++ G V + G+
Sbjct: 69 RNGVEPLLHKELQVTRQDLM--PLEEGQHYVFDIIGCRVFDKENNVLGTVTDILKTGSND 126
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + + K L+ +L V+ I+ DP
Sbjct: 127 VYIVTDEDGKELLLAVIPQVILSVDTDTKTIIADP 161
>gi|126322958|ref|XP_001364346.1| PREDICTED: similar to plectin 11 isoform 3 [Monodelphis domestica]
Length = 4553
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TFSG+ +ASEL + K+ ++ Q E+L+E + DL E + R + + G+
Sbjct: 3308 TFSGLRTPVAASELLESKVISRAQF---EQLKEGKKSVKDLSETDLVKRFLQGTDSIAGI 3364
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
Y L + M++ L P T +LE +IDPI
Sbjct: 3365 YVEETKEKLTLYQAMKRNLLRPGTAIVLLEAQ-AATGFMIDPI 3406
>gi|308063932|gb|ADO05819.1| 16S rRNA-processing protein RimM [Helicobacter pylori Sat464]
Length = 184
Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRILKMYR-- 55
++L+ IG + GLNG + + ++ P L + V + + + + Y
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I + A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTLEKAKELTNLGLFMSESESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+V + A S++E + K FLIP+ F + E+ LQ+ KI +
Sbjct: 120 ILGKVIEIQRISQIDYFMVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDKKITTNNA 177
Query: 166 AAGLNNT 172
L N+
Sbjct: 178 KTLLENS 184
>gi|260584022|ref|ZP_05851770.1| 16S rRNA processing protein RimM [Granulicatella elegans ATCC
700633]
gi|260158648|gb|EEW93716.1| 16S rRNA processing protein RimM [Granulicatella elegans ATCC
700633]
Length = 171
Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF-I 61
+ I T GL GEV + S + D RY + + +L +K +R++K F +
Sbjct: 7 VGKIVNTQGLRGEVRVISTTDFAED--RYQKGVELALFRDGEFEKLLTIKSHRRHKNFDL 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
TF I RD L D +E E++ +++ ++ +E +G++ G+V
Sbjct: 65 LTFEDHSRIEDVEGYRDC-LLKVSSDALEELEEDELYYH-EVVGLEIITDEGEHLGKVSE 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + G+ + +K +K LIPF + V +++ +ENK + GL
Sbjct: 123 ILSPGSNDVWVVKQKGKKDLLIPFIEPVVYKID-KENKQAFIHVLEGL 169
>gi|24215089|ref|NP_712570.1| 16S rRNA-processing protein RimM [Leptospira interrogans serovar
Lai str. 56601]
gi|45657430|ref|YP_001516.1| 16S rRNA-processing protein RimM [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|46397691|sp|Q8F3L3|RIMM_LEPIN RecName: Full=Ribosome maturation factor rimM
gi|56749631|sp|Q72S29|RIMM_LEPIC RecName: Full=Ribosome maturation factor rimM
gi|24196147|gb|AAN49588.1| RimM protein [Leptospira interrogans serovar Lai str. 56601]
gi|45600669|gb|AAS70153.1| 16S rRNA processing protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 176
Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 41 YSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFN 100
+ +E+ +L++ +FI F G+ A++ L+ ++ E ++EF+
Sbjct: 46 FHFPEKEITLLEIRPHGGKFIVRFEGVTTPEEAAKWIGGFLFLPQKLLPKIE-TKNEFYI 104
Query: 101 TDLEEMETFDRQGKY--WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
TDL ++ D GK W ++ V + A IL + LIPF + V +++L++N
Sbjct: 105 TDLIGLQAIDESGKKLDW-KLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDLEKN 163
Query: 159 KI-LIDP 164
I LI P
Sbjct: 164 TIVLIQP 170
>gi|313891424|ref|ZP_07825040.1| 16S rRNA processing protein RimM [Dialister microaerophilus UPII
345-E]
gi|313120199|gb|EFR43375.1| 16S rRNA processing protein RimM [Dialister microaerophilus UPII
345-E]
Length = 168
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/163 (15%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+K D+++++ I HG+ G++ + + P I N +Y + + +++ +
Sbjct: 4 MKTDEMIVVGRIVAPHGVRGDLRVLPEIDKPEIFKNIKHIYFGE-KSYKVISSRPHKNIY 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+ + +++ + L + + +E E++ +L +ME + ++G + G +
Sbjct: 63 IMKIEGVTDRNTSESMVGLSASLAKDEIPP--CKEGEYYCFELLDMEVYTQEGTFVGTLK 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + ++ +P + +V+++ K+ ++
Sbjct: 121 EIIETGANDVYTVIGPDKEEIYLPAIPSCIKKVDVESRKMTVE 163
>gi|218248799|ref|YP_002374170.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8801]
gi|226694911|sp|B7K5W1|RIMM_CYAP8 RecName: Full=Ribosome maturation factor rimM
gi|218169277|gb|ACK68014.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8801]
Length = 186
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKN-----KRFI 61
+ I GL GE+ + S ++ P + L S D ++ +++ R ++
Sbjct: 10 IGRIVAAQGLKGELKVMSSSDFPERFEKPGTRWLQSPDRLSIQEVELVRGRYVPGKNLYV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
+ I + A LRD L D +L E E+ +DL + + +Q G+ G V
Sbjct: 70 IKLAEIADRTQAETLRDYTLLVPSSDRP--QLNEGEYHVSDLINLTVYHQQTGEEIGVVT 127
Query: 121 GVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + G +LE++ NT K LIPF V V+L +I I+P
Sbjct: 128 DMLSAG-NDLLEVQLNTLNSSENTSSKKVLIPFVYEIVPVVDLVNKRIEINP 178
>gi|126322956|ref|XP_001364270.1| PREDICTED: similar to plectin 11 isoform 2 [Monodelphis domestica]
Length = 4553
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TFSG+ +ASEL + K+ ++ Q E+L+E + DL E + R + + G+
Sbjct: 3308 TFSGLRTPVAASELLESKVISRAQF---EQLKEGKKSVKDLSETDLVKRFLQGTDSIAGI 3364
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
Y L + M++ L P T +LE +IDPI
Sbjct: 3365 YVEETKEKLTLYQAMKRNLLRPGTAIVLLEAQ-AATGFMIDPI 3406
>gi|254671923|emb|CBA04257.1| 16S rRNA processing protein [Neisseria meningitidis alpha275]
gi|325202614|gb|ADY98068.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240149]
Length = 160
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F EEDE++ TDL M ++
Sbjct: 52 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVL 109
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK 147
G+V + GA +L I + LIPF
Sbjct: 110 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVS 139
>gi|19113115|ref|NP_596323.1| Nrap [Schizosaccharomyces pombe 972h-]
gi|74582969|sp|O94676|UTP22_SCHPO RecName: Full=U3 small nucleolar RNA-associated protein 22;
Short=U3 snoRNA-associated protein 22
gi|4176525|emb|CAA22881.1| Nrap [Schizosaccharomyces pombe]
Length = 1097
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEM-ETFDRQGKYWGQVCGVYN 124
I++IHS + R KL K+++ +D L + F L E+ +GKY+
Sbjct: 30 SIEDIHSLASKRK-KLNEKKENLEDLTLLKTSAFELKLNELIREISVRGKYFRH------ 82
Query: 125 FGAGSILE-IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +E IK+ + KT +IP T F NL+++K +I P+A L+
Sbjct: 83 --ANTFVEKIKDLIFKTPVIPETNFWSACKNLEKDKKVIVPLAEPLS 127
>gi|288928880|ref|ZP_06422726.1| phosphoglycerate mutase [Prevotella sp. oral taxon 317 str. F0108]
gi|288329864|gb|EFC68449.1| phosphoglycerate mutase [Prevotella sp. oral taxon 317 str. F0108]
Length = 229
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 GLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELR 77
GL+ +V SY I+ + L + L ++K +R N+R SG++ +A +
Sbjct: 47 GLDFDVCYTSYLKRAINTQQIALKVMEREWLPVIKSWRLNERHYGALSGLNKKETAEKYG 106
Query: 78 DLKLYAKRQDF--KDEELEEDEFFNT 101
D +++ R+ F + ++EED ++
Sbjct: 107 DEQVHIWRRSFDVRPPQMEEDNVYSA 132
>gi|118498129|ref|YP_899179.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida U112]
gi|194323356|ref|ZP_03057140.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida FTE]
gi|166226441|sp|A0Q860|RIMM_FRATN RecName: Full=Ribosome maturation factor rimM
gi|118424035|gb|ABK90425.1| 16S rRNA processing protein RimM [Francisella novicida U112]
gi|194322720|gb|EDX20200.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida FTE]
Length = 169
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLDGELNLYPLANSIETLISYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I++ +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|118100027|ref|XP_001232953.1| PREDICTED: similar to huntingtin interacting protein 1 [Gallus
gallus]
Length = 1018
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 22 EVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL 81
+++ S++++P + N + D+++ I ++YR+ A +++ + SE R L+L
Sbjct: 345 DIFGSSFSSDPFNFNSQNGMNKDDKDRLIEQLYRE---IGALKEELESFKAESERRGLQL 401
Query: 82 ----------YAKRQDFKDEELEEDEFFNTDLEEME 107
A+++ K + L++ EF T+LEE++
Sbjct: 402 RGRISELEAELAEQRHLKQQALDDSEFLRTELEELK 437
>gi|208779458|ref|ZP_03246803.1| 16S rRNA processing protein RimM [Francisella novicida FTG]
gi|254373480|ref|ZP_04988968.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571206|gb|EDN36860.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3549]
gi|208744419|gb|EDZ90718.1| 16S rRNA processing protein RimM [Francisella novicida FTG]
Length = 169
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRF 60
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++ +
Sbjct: 5 FVEIAKIGATYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKV 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ I++ +A + + + ++ +L EDE + DL + +G V
Sbjct: 65 YIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGVVV 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L K +LIP+ K ++ +L KI++D
Sbjct: 123 DIIETGANEVLVCKED-NSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|34541051|ref|NP_905530.1| 16S rRNA-processing protein RimM [Porphyromonas gingivalis W83]
gi|48474342|sp|Q7MUW2|RIMM_PORGI RecName: Full=Ribosome maturation factor rimM
gi|34397366|gb|AAQ66429.1| 16S rRNA processing protein RimM, putative [Porphyromonas
gingivalis W83]
Length = 175
Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKM-- 53
M+ LD L + +G HG+ GE N + + L+ + R EL L +
Sbjct: 1 MIDLDSLEHIGVLGKPHGVQGE------CNARLTADLSTLFEEEERLFLFFELDALPVPF 54
Query: 54 ----YRKNKRFIAT--FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
YR+ I F+GI++ + + L+ +R+ F + +E F
Sbjct: 55 RLIGYREKTDDITLLRFAGIESKEEMEQYTGVSLFMERRYFDTDSIE---FTWEHFIGFT 111
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
FDR+G + G + V +L I K L+P + + E+++ K+
Sbjct: 112 VFDREGCFVGTIDDVDESTLNVLLSITTPEGKELLLPVAEDLLEEIDVPNRKL 164
>gi|325133892|gb|EGC56548.1| 16S rRNA processing protein RimM [Neisseria meningitidis M13399]
Length = 169
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNGELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A LR + R+ F EEDE++ DL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLRGYTIEIPREAFA--PTEEDEYYWADLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L I + LIPF + V+ I D
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD 164
>gi|281492128|ref|YP_003354108.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
gi|281375811|gb|ADA65308.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
Length = 171
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
++K + TI T GL GEV + + R+ VL D+++ I + K+ R
Sbjct: 1 MEKFYKVGTIVNTQGLQGEVRV--MPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGR 58
Query: 60 -----FIATFSGIDNIHSASELRD--LKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDR 111
++ F G +I+ + + +K+ + Q D D E E +D+ E +
Sbjct: 59 PQKNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDVL-- 116
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ +L V++ ++++ + I GL++
Sbjct: 117 ----IGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVSQHRVDV-SIMEGLDD 171
>gi|288800675|ref|ZP_06406132.1| phosphoglycerate mutase [Prevotella sp. oral taxon 299 str. F0039]
gi|288332136|gb|EFC70617.1| phosphoglycerate mutase [Prevotella sp. oral taxon 299 str. F0039]
Length = 230
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 GLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELR 77
G++ ++ SY I+ + +L + L + K Y+ N+R SG++ +A +
Sbjct: 47 GIDFDICFTSYLKRAINTQQIILKEMEREWLPVFKSYKLNERHYGALSGLNKKETAEKYG 106
Query: 78 D--LKLYAKRQDFKDEELEEDEFFNT 101
D +K++ + D + +EED +N+
Sbjct: 107 DDQVKIWRRSFDVRPPMMEEDNQYNS 132
>gi|255018465|ref|ZP_05290591.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
F2-515]
Length = 94
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 93 LEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
LEE+EF+ ++ G+ G++ + GA + +K +K LIP+ V E
Sbjct: 17 LEENEFYFHEIIGCTVVTTDGEELGEITEILTPGANDVWVVKGADKKEKLIPYIADVVKE 76
Query: 153 VNLQENKILIDPIAAGLN 170
+N+ + KI I+ + L+
Sbjct: 77 INIDDQKITIEVMEGLLD 94
>gi|194911114|ref|XP_001982290.1| GG11128 [Drosophila erecta]
gi|190656928|gb|EDV54160.1| GG11128 [Drosophila erecta]
Length = 1272
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+ CGV N A S ++ T K+ + LE NL + L+ P+ A NT ++N
Sbjct: 254 ESCGVANTLASSFVDKNVTFAKSLITSGETIEELEANLHSGRKLLGPMVASDVNTFLENE 313
Query: 178 --QYDCPLDSA 186
Q++ PL SA
Sbjct: 314 LMQHEFPLFSA 324
>gi|289167676|ref|YP_003445945.1| 16S_rRNA processing protein RimM [Streptococcus mitis B6]
gi|288907243|emb|CBJ22078.1| 16S rRNA processing protein RimM [Streptococcus mitis B6]
Length = 172
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKM--YRKNKRF-IA 62
+ I T GL GE+ + S + + + L+ N+ ++ + + +RK K F I
Sbjct: 6 VGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKNQFVQTVTIASHRKQKNFDII 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + +I++ + + L +D D L++ EF+ ++ +E ++ G + +
Sbjct: 66 KFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGDN-LIGTIKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA + +K ++ L+P+ VL V++ N++ ++ I GL++
Sbjct: 123 LQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVE-ILEGLDD 170
>gi|308183252|ref|YP_003927379.1| 16S rRNA-processing protein RimM [Helicobacter pylori PeCan4]
gi|308065437|gb|ADO07329.1| 16S rRNA-processing protein RimM [Helicobacter pylori PeCan4]
Length = 184
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 27/175 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V ++ +E I +
Sbjct: 4 VLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSAAPLNAFFCASSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ ++ K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEEESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G+V + A S++E + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQIDYFMVETARSLVE--KGLAKIFLIPYRDFYIQEILLQDKKI 172
>gi|307704583|ref|ZP_07641488.1| 16S rRNA processing protein RimM [Streptococcus mitis SK597]
gi|307621880|gb|EFO00912.1| 16S rRNA processing protein RimM [Streptococcus mitis SK597]
Length = 172
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 54 YRKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+RK+K F I F + +I++ + + L +D D L++ EF+ ++ +E ++
Sbjct: 56 HRKHKNFDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + + GA + +K ++ L+P+ VL V++ N++ ++ I GL++
Sbjct: 114 N-LIGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVNVE-ILEGLDD 170
>gi|293374722|ref|ZP_06621030.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
gi|292646636|gb|EFF64638.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
Length = 168
Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNREL--RILKMYRKNKRF-IA 62
+ I TH L GEV + S N+ R+ L+ N E I+ +R++K +
Sbjct: 6 VGKIVNTHALQGEVKVVS--NSDFKEERFKKGSQLFIEFNGEYIEVIVATHREHKGADLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++I+ + + L ++ D L+E+EF+ ++ G+ G++ +
Sbjct: 64 KFKHLNSINDVEKYKGCDLLVSAENLDD--LDENEFYYFEIIGCTVKATTGEEIGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
GA + +K +K LIP+ + V V+++ +++I+ +
Sbjct: 122 LETGANDVWVVKRKGQKDALIPYIEDVVKSVDVEAKEVIIEVL 164
>gi|15612141|ref|NP_223793.1| 16S rRNA-processing protein RimM [Helicobacter pylori J99]
gi|14423908|sp|Q9ZK65|RIMM_HELPJ RecName: Full=Ribosome maturation factor rimM
gi|4155670|gb|AAD06656.1| putative [Helicobacter pylori J99]
Length = 181
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 41/182 (22%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--------------------YVLYSNDNR 46
++L+ IG + GLNG + + ++ P L + YV++S +
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCASSFKDYVIHSYE-- 58
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEE 105
+ KN F+ T I A EL +L L+ + K L+E EFF DL
Sbjct: 59 -------HAKNLLFLET---IRTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLIG 108
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQEN 158
+ + + G+V + ++ T + K FLIP+ F + E+ LQ+
Sbjct: 109 LSVVEGN-EILGKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIQEILLQDK 167
Query: 159 KI 160
KI
Sbjct: 168 KI 169
>gi|297794617|ref|XP_002865193.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
gi|297311028|gb|EFH41452.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
Length = 654
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSN-------DNRELRILKMY 54
LV + + HGL GE+ I + P DL R L D EL + +
Sbjct: 81 LVEVGFLSGVHGLQGEICIKPNTDFP-DLRFSKPGRRWLKQQLMGQEKIDEVELVEGRPH 139
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
K +I F G+D++ +L L A+ EL++DEF++ DL M+ ++ G
Sbjct: 140 PAQKSWILKFRGLDDVDQVRQLVGATLLAEDD--DRPELDDDEFYSRDLVGMKVLLKETG 197
Query: 114 KYWGQVCGVYNFGAGSIL--------EIKNTMEKT---FLIPFTKFAVLEVNLQENKILI 162
+ G V +++ G +L E+ N KT IPF V +V+L+ ++ I
Sbjct: 198 QLVGTVANIFDNGGNDLLHVLLDSSMEVCNGSAKTNQLVWIPFVDAIVPDVDLERKEMYI 257
Query: 163 DPIAAGLNNTTMK 175
P GL M+
Sbjct: 258 TP-PKGLLEVNMR 269
>gi|325840597|ref|ZP_08167078.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
gi|325490246|gb|EGC92579.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
Length = 168
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNREL--RILKMYRKNKRF-IA 62
+ I TH L GEV + S N+ R+ L+ N E I+ +R++K +
Sbjct: 6 VGKIVNTHALQGEVKVVS--NSDFKEERFKKGNQLFIEFNGEYIEVIVATHREHKGADLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++I+ + + L ++ D L+E+EF+ ++ G+ G++ +
Sbjct: 64 KFKHLNSINDVEKYKGCDLLVSAENLDD--LDENEFYYFEIIGCTVKATTGEEIGEITEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + +K +K LIP+ + V V+++ +++I+ + L
Sbjct: 122 LETGANDVWVVKRKGQKDALIPYIEDVVKSVDVEAKEVIIEVLEGLL 168
>gi|261377990|ref|ZP_05982563.1| 16S rRNA processing protein RimM [Neisseria cinerea ATCC 14685]
gi|269145861|gb|EEZ72279.1| 16S rRNA processing protein RimM [Neisseria cinerea ATCC 14685]
Length = 169
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIAT 63
V M I G+ G + I + Y+++ +D + L + + L+ + N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWQLVKDGKTVVVTLEEGKVVNGELQVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI++ A LR + R+ F EE E++ DL M ++ G+V +
Sbjct: 68 FEGINDRDLAFSLRGYTIEIPREAFA--PTEEGEYYWADLVGMTVTNKDNTILGKVSNLM 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA +L + N LIPF V V+ I+ D
Sbjct: 126 ETGANDVL-VVNGKYGQILIPFVSQYVETVDTGSKTIIAD 164
>gi|261838475|gb|ACX98241.1| 16s rRNA processing protein [Helicobacter pylori 51]
Length = 184
Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V ++ +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSAAPLNAFFCASSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+V + A S++E + K FLIP+ F + E+ LQ+ KI +
Sbjct: 120 ILGKVIEIQRISQIDYFLVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDQKITTNNA 177
Query: 166 AAGLNNT 172
L N+
Sbjct: 178 KTLLENS 184
>gi|218767728|ref|YP_002342240.1| 16S rRNA-processing protein RimM [Neisseria meningitidis Z2491]
gi|14423893|sp|Q9JVK9|RIMM_NEIMA RecName: Full=Ribosome maturation factor rimM
gi|121051736|emb|CAM08040.1| putative 16S rRNA processing protein [Neisseria meningitidis Z2491]
gi|325129771|gb|EGC52580.1| 16S rRNA processing protein RimM [Neisseria meningitidis
OX99.30304]
gi|325135813|gb|EGC58425.1| 16S rRNA processing protein RimM [Neisseria meningitidis M0579]
gi|325207636|gb|ADZ03088.1| 16S rRNA processing protein RimM [Neisseria meningitidis NZ-05/33]
Length = 169
Score = 34.3 bits (77), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKMYRK--NKRFIA 62
V M I G+ G + I + Y+++ +D + L D + + + K N
Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV-KDGKTISVTLEAGKVVNSELQV 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++ A L + R+ F EEDE++ TDL M ++ G+V +
Sbjct: 67 KFEGINDRDLAFSLHGYTIEIPREAFA--PTEEDEYYWTDLVGMTVVNKDHTVLGKVSNL 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTK 147
GA +L I + LIPF
Sbjct: 125 METGANDVLMIDGEHGQ-ILIPFVS 148
>gi|219669775|ref|YP_002460210.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense
DCB-2]
gi|219540035|gb|ACL21774.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense
DCB-2]
Length = 170
Score = 34.3 bits (77), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 9/152 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSN-DNRELRILKMYRKNKRFIAT 63
VL+ + HG+ GE+ + +NP L +L N + R L++L T
Sbjct: 4 VLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSEVYLT 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI+ A +R + A R L+E ++ +LE M+ ++ G + V
Sbjct: 64 LEGINTRDEAEAIRGWAVKADRDQVPP--LKEGWYY-FELEGMQVYEGD-VLLGTLAQVI 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL 155
GA + +K + +P K V V++
Sbjct: 120 QTGANDVYLVKGD-QGEICVPALKTVVKHVDV 150
>gi|315587037|gb|ADU41418.1| 16S rRNA processing protein RimM [Helicobacter pylori 35A]
Length = 184
Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----------LYSNDNRELRILKM-YR 55
++L+ IG + GLNG + + ++ P L + V ++ +E I +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSAAPLNAFFCTSSFKEYTIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+V + A S++E + K FLIP+ F + E+ LQ+ KI +
Sbjct: 120 VLGKVIEIQRISQIDYFLVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDKKITTNNA 177
Query: 166 AAGLNNT 172
L N+
Sbjct: 178 KTLLENS 184
>gi|308184890|ref|YP_003929023.1| 16S rRNA-processing protein RimM [Helicobacter pylori SJM180]
gi|308060810|gb|ADO02706.1| 16S rRNA-processing protein RimM [Helicobacter pylori SJM180]
Length = 184
Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 41/182 (22%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--------------------YVLYSNDNR 46
++L+ IG + GLNG + + ++ P L + YV++S +
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYE-- 61
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEE 105
+ KN F+ T I A EL +L L+ + K L+E EFF DL
Sbjct: 62 -------HAKNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVG 111
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQEN 158
+ + + + G+V + ++ T+ K FLIP+ + E+ LQ+
Sbjct: 112 LSVVE-ENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDLYIQEILLQDK 170
Query: 159 KI 160
KI
Sbjct: 171 KI 172
>gi|15673547|ref|NP_267721.1| 16S rRNA-processing protein [Lactococcus lactis subsp. lactis
Il1403]
gi|13878679|sp|Q9CFB6|RIMM_LACLA RecName: Full=Ribosome maturation factor rimM
gi|12724568|gb|AAK05663.1|AE006387_6 16S rRNA processing protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407033|gb|ADZ64104.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
CV56]
Length = 171
Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
++K + TI T GL GEV + + R+ VL D+++ I + K+ R
Sbjct: 1 MEKFYKVGTIVNTQGLQGEVRV--MPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGR 58
Query: 60 -----FIATFSGIDNIHSASELRD--LKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDR 111
++ F G +I+ + + +K+ + Q D D E E +D+ E +
Sbjct: 59 PQKNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVYENDIL-- 116
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ +L V++ ++++ + I GL++
Sbjct: 117 ----IGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHRVDV-SIMEGLDD 171
>gi|152991966|ref|YP_001357687.1| 16S rRNA processing protein RimM [Sulfurovum sp. NBC37-1]
gi|166226484|sp|A6Q771|RIMM_SULNB RecName: Full=Ribosome maturation factor rimM
gi|151423827|dbj|BAF71330.1| 16S rRNA processing protein RimM [Sulfurovum sp. NBC37-1]
Length = 178
Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
+A IG T GL G++ + + + P Y ++ EL I + KR F G +
Sbjct: 10 FIAQIGRTVGLWGDLKLHLHTDFPEQFKVGNSYQSNRGELTISDI--NFKRGTIRFQGYE 67
Query: 69 NIHSASELRDLKLYAKRQDFKDE-ELEEDEFF 99
+I +A +L + KLYA K++ LEE + F
Sbjct: 68 SIDAAKKLTNTKLYADEAQTKEQCPLEEGQHF 99
>gi|217426808|gb|ACK44516.1| AT5G10090-like protein [Arabidopsis arenosa]
Length = 590
Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVN---LQENKILIDPI 165
F+R+G W + C N S + N T I FTK E N LQENK+L +P+
Sbjct: 19 FNRRG-LWSKKCPADNSSHKSTMSSSNASTATANIQFTKSPCTEFNPRKLQENKVLPEPV 77
>gi|329121414|ref|ZP_08250039.1| 16S rRNA processing protein RimM [Dialister micraerophilus DSM
19965]
gi|327469704|gb|EGF15171.1| 16S rRNA processing protein RimM [Dialister micraerophilus DSM
19965]
Length = 168
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/163 (15%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+K D++ ++ I HG+ G++ + + P I N +Y + + +++ +
Sbjct: 4 MKTDEMTVVGRIVAPHGVRGDLRVLPEIDKPEIFKNIKHIYFGE-KSYKVISSRPHKNIY 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+ + +++ + L + + +E E++ +L +ME + ++G + G +
Sbjct: 63 IMKVEGVTDRNTSESMVGLSASLSKDEIPP--CKEGEYYCFELLDMEVYTQEGTFVGTLK 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA + + ++ +P + +V+++ K+ ++
Sbjct: 121 EIIETGANDVYTVIGPDKEEIYLPAIPSCIKKVDVESRKMTVE 163
>gi|313836660|gb|EFS74374.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA2]
gi|314928167|gb|EFS91998.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL044PA1]
gi|314972166|gb|EFT16263.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA3]
gi|328907970|gb|EGG27730.1| 16S rRNA processing protein RimM [Propionibacterium sp. P08]
Length = 180
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 16 THGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFSGIDNIH 71
HGL G+V ++ + P + V R +L +++ I F + N +
Sbjct: 17 AHGLRGDVVVEVRTDEPDERFGVGATVRVEGARRDDLTVVRSRWAKGSLIVAFDEVSNRN 76
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A LR L + ++ + DEF++ L + D G G V V + A +L
Sbjct: 77 GAEGLRGSVLVVD-VEADEDPDDPDEFWDRRLRGLTVVDESGSTRGTVKDVLHMPAQDVL 135
Query: 132 EIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
I E+ L+PF V V++ +I++ + L+
Sbjct: 136 VIDVGGEEC-LVPFVHQLVPTVDVASGRIVVSSVPGLLD 173
>gi|317012926|gb|ADU83534.1| 16S rRNA-processing protein RimM [Helicobacter pylori Lithuania75]
Length = 189
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIA 62
++L+ IG + GLNG + + ++ P L + V S N + K Y + I
Sbjct: 4 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSFVSSFKEYVIKEYVIH 63
Query: 63 TFSGIDNI---------HSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQ 112
++ N+ A EL +L L+ + K L++ EFF DL + + +
Sbjct: 64 SYEHAKNLLFLETIQTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-E 122
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
+ G+V + ++ T+ K FLIP+ F + E+ LQ+ KI
Sbjct: 123 NEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKI 177
>gi|317180880|dbj|BAJ58666.1| 16S rRNA processing protein [Helicobacter pylori F32]
Length = 184
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 27/175 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP-----------IDLNRYVLYSNDNRELRILKMYR 55
++L+ IG + GLNG + + ++ P LN + S+ + +
Sbjct: 4 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVGVAPLNAFSCTSSFKEYIIHSYEHA 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
KN F+ T I A EL +L L+ + K L++ EFF DL + + + +
Sbjct: 64 KNLLFLET---IHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVVE-ENE 119
Query: 115 YWGQVCGVYNFG---------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G+V + A S++E + K FLIP+ F + E+ LQ+ KI
Sbjct: 120 ILGKVIEIQRISQIDYFLVETARSLVE--KGLAKIFLIPYRDFYIKEILLQDQKI 172
>gi|304383750|ref|ZP_07366209.1| phosphoglycerate mutase [Prevotella marshii DSM 16973]
gi|304335274|gb|EFM01545.1| phosphoglycerate mutase [Prevotella marshii DSM 16973]
Length = 229
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 18 GLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELR 77
G++ +V SY I+ + +L D L ++K Y+ N+R SG++ +A +
Sbjct: 47 GIDFDVCFTSYLRRAINTQQIILKEMDREWLPVIKSYKLNERHYGALSGLNKKETAEKYG 106
Query: 78 DLKLYAKRQDF 88
D +++ R+ F
Sbjct: 107 DEQVHLWRRSF 117
Searching..................................................done
Results from round 2
>gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040390|gb|ACT57186.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 190
Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats.
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF
Sbjct: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC
Sbjct: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD
Sbjct: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
Query: 181 CPLDSAGKKS 190
CPLDSAGKKS
Sbjct: 181 CPLDSAGKKS 190
>gi|222150103|ref|YP_002551060.1| 16S rRNA-processing protein RimM [Agrobacterium vitis S4]
gi|221737085|gb|ACM38048.1| 16S rRNA processing protein RimM [Agrobacterium vitis S4]
Length = 221
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 109/178 (61%), Gaps = 1/178 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMA IG GL GEV + S+ +P+ L Y L++ D R +L +
Sbjct: 32 MTKLENPVLMAVIGAAQGLRGEVRVKSFTADPMALGDYGKLHAGDGRVFEVLDIREAKTV 91
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+L+ +R DEEL++DEF+ DLE + D +G +G V
Sbjct: 92 VVVRFRGVNDRNAAEALNGLELFIERSALPDEELDDDEFYYADLEGLAVVDAEGNSYGTV 151
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V++FGAG +LE+K ++ L+PF++ AVL+++L+E K+LIDP AAGL + + P
Sbjct: 152 TAVFDFGAGDLLEVKGPGKRPVLVPFSEAAVLQIDLEEGKLLIDPEAAGLKDDGSEEP 209
>gi|86359540|ref|YP_471432.1| 16S rRNA-processing protein [Rhizobium etli CFN 42]
gi|86283642|gb|ABC92705.1| 16S rRNA processing protein [Rhizobium etli CFN 42]
Length = 217
Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y +L+S D R IL++
Sbjct: 30 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGLLHSTDGRSFEILEIREMKNV 89
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 90 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEALDDKGVSYGTV 149
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL +
Sbjct: 150 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPE 204
>gi|218513354|ref|ZP_03510194.1| 16S rRNA-processing protein [Rhizobium etli 8C-3]
Length = 206
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R IL++
Sbjct: 18 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDGRSFEILEIREMKNV 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D G +G V
Sbjct: 78 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDHGVSYGTV 137
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 138 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 193
>gi|209551324|ref|YP_002283241.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238058953|sp|B5ZTH9|RIMM_RHILW RecName: Full=Ribosome maturation factor rimM
gi|209537080|gb|ACI57015.1| 16S rRNA processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 189
Score = 217 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VIVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 176
>gi|109893039|sp|Q2K381|RIMM_RHIEC RecName: Full=Ribosome maturation factor rimM
Length = 188
Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y +L+S D R IL++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGLLHSTDGRSFEILEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEALDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL +
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPE 175
>gi|190893807|ref|YP_001980349.1| 16S rRNA processing protein [Rhizobium etli CIAT 652]
gi|209573647|sp|B3PR17|RIMM_RHIE6 RecName: Full=Ribosome maturation factor rimM
gi|190699086|gb|ACE93171.1| 16S rRNA processing protein [Rhizobium etli CIAT 652]
Length = 193
Score = 217 bits (554), Expect = 6e-55, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R IL++
Sbjct: 5 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDGRSFEILEIREMKNV 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+LY +R + DEELE+DEF+ DLE +E D QG +G V
Sbjct: 65 VVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDQGVSYGTV 124
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 125 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 180
>gi|172046212|sp|Q1MAK4|RIMM_RHIL3 RecName: Full=Ribosome maturation factor rimM
Length = 189
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEEL+EDEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELDEDEFYYADLEGLEARDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 176
>gi|116254277|ref|YP_770115.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
viciae 3841]
gi|115258925|emb|CAK10034.1| putative 16S rRNA processing protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 193
Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 5 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEEL+EDEF+ DLE +E D +G +G V
Sbjct: 65 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELDEDEFYYADLEGLEARDDKGVSYGTV 124
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 125 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 180
>gi|241206760|ref|YP_002977856.1| 16S rRNA-processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860650|gb|ACS58317.1| 16S rRNA processing protein RimM [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 189
Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV +Y +P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGGAQGLRGEVRAKAYTADPGALGDYGHLHSMDGRSFEVLEIREMKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ ++A L L+LY +R + DEELE+DEF+ DLE +E D +G +G V
Sbjct: 61 VVVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGVSYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL +
Sbjct: 121 TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVEDPEE 176
>gi|163757327|ref|ZP_02164416.1| 16S rRNA-processing protein [Hoeflea phototrophica DFL-43]
gi|162284829|gb|EDQ35111.1| 16S rRNA-processing protein [Hoeflea phototrophica DFL-43]
Length = 202
Score = 213 bits (544), Expect = 9e-54, Method: Composition-based stats.
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL+ +L+ IG G+ GEV + + +P+ + Y LYS D R IL
Sbjct: 8 MSKLENPILIGIIGAAQGIRGEVRVKPFTEDPMAIAEYGALYSEDGRRFEILDHRLAKTV 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L+ L LY R DE+LEE E+F+ DLE +E +D +G++WG+V
Sbjct: 68 VVVRFRGINDRNAAEALKGLNLYIDRSSLDDEDLEEGEYFHADLEGLEAWDAEGQFWGEV 127
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV +FG G +LE++ K +IPFT AV +V+L+ +IL+DPIAAGL +T +
Sbjct: 128 SGVLDFGGGDLLELREDGRKPVVIPFTLAAVPKVDLEAGRILVDPIAAGLIDTGEDDEPG 187
Query: 180 DCPLDSAGKKS 190
+ D G+
Sbjct: 188 E-GFDGKGEGP 197
>gi|260464186|ref|ZP_05812379.1| 16S rRNA processing protein RimM [Mesorhizobium opportunistum
WSM2075]
gi|259029989|gb|EEW31272.1| 16S rRNA processing protein RimM [Mesorhizobium opportunistum
WSM2075]
Length = 199
Score = 212 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K V MA IG HG+ GE+ + ++ P+ L Y LYS D R +I+ + N
Sbjct: 1 MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYSRDGRAFQIIDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGVTDRNTAEALAGTELFVDRSMLPDD-GEEDEFYHADLIGLEVRDDTGAALGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V+NFG G IL++ K LIPFT+ AV +V++ E + IDP AAGL P
Sbjct: 120 VAVHNFGGGDILDVTLGGRKGVLIPFTQAAVPQVSIAEGFVRIDPAAAGLVEDEDGEPPR 179
Query: 180 DCPLDSAGKK 189
+ D G+
Sbjct: 180 EEDFDPKGRP 189
>gi|17986432|ref|NP_539066.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 1 str.
16M]
gi|23502765|ref|NP_698892.1| 16S rRNA-processing protein RimM [Brucella suis 1330]
gi|62290769|ref|YP_222562.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 1 str.
9-941]
gi|82700681|ref|YP_415255.1| 16S rRNA-processing protein RimM [Brucella melitensis biovar
Abortus 2308]
gi|148559613|ref|YP_001259739.1| 16S rRNA-processing protein RimM [Brucella ovis ATCC 25840]
gi|161619833|ref|YP_001593720.1| 16S rRNA-processing protein [Brucella canis ATCC 23365]
gi|163843938|ref|YP_001628342.1| 16S rRNA-processing protein [Brucella suis ATCC 23445]
gi|189024984|ref|YP_001935752.1| 16S rRNA-processing protein RimM [Brucella abortus S19]
gi|225628114|ref|ZP_03786149.1| 16S rRNA processing protein RimM [Brucella ceti str. Cudo]
gi|225853352|ref|YP_002733585.1| 16S rRNA-processing protein RimM [Brucella melitensis ATCC 23457]
gi|237816276|ref|ZP_04595269.1| 16S rRNA processing protein RimM [Brucella abortus str. 2308 A]
gi|254690059|ref|ZP_05153313.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 6 str. 870]
gi|254694547|ref|ZP_05156375.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 3 str.
Tulya]
gi|254696172|ref|ZP_05158000.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 2 str.
86/8/59]
gi|254700559|ref|ZP_05162387.1| 16S rRNA-processing protein RimM [Brucella suis bv. 5 str. 513]
gi|254704929|ref|ZP_05166757.1| 16S rRNA-processing protein RimM [Brucella suis bv. 3 str. 686]
gi|254707557|ref|ZP_05169385.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis
M163/99/10]
gi|254708906|ref|ZP_05170717.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis B2/94]
gi|254713667|ref|ZP_05175478.1| 16S rRNA-processing protein RimM [Brucella ceti M644/93/1]
gi|254715979|ref|ZP_05177790.1| 16S rRNA-processing protein RimM [Brucella ceti M13/05/1]
gi|254731090|ref|ZP_05189668.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 4 str. 292]
gi|256030432|ref|ZP_05444046.1| 16S rRNA-processing protein RimM [Brucella pinnipedialis M292/94/1]
gi|256045522|ref|ZP_05448405.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059891|ref|ZP_05450078.1| 16S rRNA-processing protein RimM [Brucella neotomae 5K33]
gi|256112249|ref|ZP_05453170.1| 16S rRNA-processing protein RimM [Brucella melitensis bv. 3 str.
Ether]
gi|256258312|ref|ZP_05463848.1| 16S rRNA-processing protein RimM [Brucella abortus bv. 9 str. C68]
gi|256263162|ref|ZP_05465694.1| ribosome maturation factor rimM [Brucella melitensis bv. 2 str.
63/9]
gi|256370317|ref|YP_003107828.1| 16S rRNA-processing protein [Brucella microti CCM 4915]
gi|260169342|ref|ZP_05756153.1| 16S rRNA-processing protein RimM [Brucella sp. F5/99]
gi|260546036|ref|ZP_05821776.1| ribosome maturation factor rimM [Brucella abortus NCTC 8038]
gi|260562832|ref|ZP_05833318.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
16M]
gi|260567596|ref|ZP_05838066.1| ribosome maturation factor rimM [Brucella suis bv. 4 str. 40]
gi|260755594|ref|ZP_05867942.1| ribosome maturation factor rimM [Brucella abortus bv. 6 str. 870]
gi|260758820|ref|ZP_05871168.1| ribosome maturation factor rimM [Brucella abortus bv. 4 str. 292]
gi|260760544|ref|ZP_05872887.1| ribosome maturation factor rimM [Brucella abortus bv. 2 str.
86/8/59]
gi|260884620|ref|ZP_05896234.1| ribosome maturation factor rimM [Brucella abortus bv. 9 str. C68]
gi|261214867|ref|ZP_05929148.1| ribosome maturation factor rimM [Brucella abortus bv. 3 str. Tulya]
gi|261217744|ref|ZP_05932025.1| ribosome maturation factor rimM [Brucella ceti M13/05/1]
gi|261315041|ref|ZP_05954238.1| ribosome maturation factor rimM [Brucella pinnipedialis M163/99/10]
gi|261316402|ref|ZP_05955599.1| ribosome maturation factor rimM [Brucella pinnipedialis B2/94]
gi|261321408|ref|ZP_05960605.1| ribosome maturation factor rimM [Brucella ceti M644/93/1]
gi|261323862|ref|ZP_05963059.1| ribosome maturation factor rimM [Brucella neotomae 5K33]
gi|261751063|ref|ZP_05994772.1| ribosome maturation factor rimM [Brucella suis bv. 5 str. 513]
gi|261755625|ref|ZP_05999334.1| ribosome maturation factor rimM [Brucella suis bv. 3 str. 686]
gi|261758858|ref|ZP_06002567.1| ribosome maturation factor rimM [Brucella sp. F5/99]
gi|265987474|ref|ZP_06100031.1| ribosome maturation factor rimM [Brucella pinnipedialis M292/94/1]
gi|265991946|ref|ZP_06104503.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993678|ref|ZP_06106235.1| ribosome maturation factor rimM [Brucella melitensis bv. 3 str.
Ether]
gi|294851156|ref|ZP_06791829.1| 16S rRNA processing protein RimM [Brucella sp. NVSL 07-0026]
gi|297247157|ref|ZP_06930875.1| 16S rRNA processing protein RimM [Brucella abortus bv. 5 str.
B3196]
gi|54039057|sp|P66652|RIMM_BRUSU RecName: Full=Ribosome maturation factor rimM
gi|54041927|sp|P66651|RIMM_BRUME RecName: Full=Ribosome maturation factor rimM
gi|75496198|sp|Q57AY3|RIMM_BRUAB RecName: Full=Ribosome maturation factor rimM
gi|109893002|sp|Q2YLT0|RIMM_BRUA2 RecName: Full=Ribosome maturation factor rimM
gi|166226428|sp|A5VSP2|RIMM_BRUO2 RecName: Full=Ribosome maturation factor rimM
gi|189040127|sp|A9M8Q1|RIMM_BRUC2 RecName: Full=Ribosome maturation factor rimM
gi|189040128|sp|B0CIR9|RIMM_BRUSI RecName: Full=Ribosome maturation factor rimM
gi|238689405|sp|B2S869|RIMM_BRUA1 RecName: Full=Ribosome maturation factor rimM
gi|254797745|sp|C0RFF9|RIMM_BRUMB RecName: Full=Ribosome maturation factor rimM
gi|17982028|gb|AAL51330.1| 16S ribosomal RNA processing protein rimm [Brucella melitensis bv.
1 str. 16M]
gi|23348784|gb|AAN30807.1| 16S rRNA processing protein RimM [Brucella suis 1330]
gi|62196901|gb|AAX75201.1| RimM, 16S rRNA processing protein [Brucella abortus bv. 1 str.
9-941]
gi|82616782|emb|CAJ11871.1| ATP/GTP-binding site motif A (P-loop):RimM protein [Brucella
melitensis biovar Abortus 2308]
gi|148370870|gb|ABQ60849.1| 16S rRNA processing protein RimM [Brucella ovis ATCC 25840]
gi|161336644|gb|ABX62949.1| 16S rRNA processing protein RimM [Brucella canis ATCC 23365]
gi|163674661|gb|ABY38772.1| 16S rRNA processing protein RimM [Brucella suis ATCC 23445]
gi|189020556|gb|ACD73278.1| RimM protein [Brucella abortus S19]
gi|225616939|gb|EEH13986.1| 16S rRNA processing protein RimM [Brucella ceti str. Cudo]
gi|225641717|gb|ACO01631.1| 16S rRNA processing protein RimM [Brucella melitensis ATCC 23457]
gi|237788343|gb|EEP62558.1| 16S rRNA processing protein RimM [Brucella abortus str. 2308 A]
gi|256000480|gb|ACU48879.1| 16S rRNA-processing protein [Brucella microti CCM 4915]
gi|260096143|gb|EEW80019.1| ribosome maturation factor rimM [Brucella abortus NCTC 8038]
gi|260152848|gb|EEW87940.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
16M]
gi|260157114|gb|EEW92194.1| ribosome maturation factor rimM [Brucella suis bv. 4 str. 40]
gi|260669138|gb|EEX56078.1| ribosome maturation factor rimM [Brucella abortus bv. 4 str. 292]
gi|260670976|gb|EEX57797.1| ribosome maturation factor rimM [Brucella abortus bv. 2 str.
86/8/59]
gi|260675702|gb|EEX62523.1| ribosome maturation factor rimM [Brucella abortus bv. 6 str. 870]
gi|260874148|gb|EEX81217.1| ribosome maturation factor rimM [Brucella abortus bv. 9 str. C68]
gi|260916474|gb|EEX83335.1| ribosome maturation factor rimM [Brucella abortus bv. 3 str. Tulya]
gi|260922833|gb|EEX89401.1| ribosome maturation factor rimM [Brucella ceti M13/05/1]
gi|261294098|gb|EEX97594.1| ribosome maturation factor rimM [Brucella ceti M644/93/1]
gi|261295625|gb|EEX99121.1| ribosome maturation factor rimM [Brucella pinnipedialis B2/94]
gi|261299842|gb|EEY03339.1| ribosome maturation factor rimM [Brucella neotomae 5K33]
gi|261304067|gb|EEY07564.1| ribosome maturation factor rimM [Brucella pinnipedialis M163/99/10]
gi|261738842|gb|EEY26838.1| ribosome maturation factor rimM [Brucella sp. F5/99]
gi|261740816|gb|EEY28742.1| ribosome maturation factor rimM [Brucella suis bv. 5 str. 513]
gi|261745378|gb|EEY33304.1| ribosome maturation factor rimM [Brucella suis bv. 3 str. 686]
gi|262764659|gb|EEZ10580.1| ribosome maturation factor rimM [Brucella melitensis bv. 3 str.
Ether]
gi|263003012|gb|EEZ15305.1| ribosome maturation factor rimM [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093067|gb|EEZ17217.1| ribosome maturation factor rimM [Brucella melitensis bv. 2 str.
63/9]
gi|264659671|gb|EEZ29932.1| ribosome maturation factor rimM [Brucella pinnipedialis M292/94/1]
gi|294819745|gb|EFG36744.1| 16S rRNA processing protein RimM [Brucella sp. NVSL 07-0026]
gi|297174326|gb|EFH33673.1| 16S rRNA processing protein RimM [Brucella abortus bv. 5 str.
B3196]
gi|326409917|gb|ADZ66982.1| RimM protein [Brucella melitensis M28]
gi|326539630|gb|ADZ87845.1| 16S rRNA processing protein RimM [Brucella melitensis M5-90]
Length = 189
Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 1/189 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPPH 180
Query: 180 DCPLDSAGK 188
+
Sbjct: 181 ESGKKPKKP 189
>gi|256158416|ref|ZP_05456314.1| 16S rRNA-processing protein RimM [Brucella ceti M490/95/1]
gi|256253836|ref|ZP_05459372.1| 16S rRNA-processing protein RimM [Brucella ceti B1/94]
gi|261220971|ref|ZP_05935252.1| ribosome maturation factor rimM [Brucella ceti B1/94]
gi|265996930|ref|ZP_06109487.1| ribosome maturation factor rimM [Brucella ceti M490/95/1]
gi|260919555|gb|EEX86208.1| ribosome maturation factor rimM [Brucella ceti B1/94]
gi|262551398|gb|EEZ07388.1| ribosome maturation factor rimM [Brucella ceti M490/95/1]
Length = 189
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 1/189 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLIADEHDNPSH 180
Query: 180 DCPLDSAGK 188
+
Sbjct: 181 ESGKKPKKP 189
>gi|319780737|ref|YP_004140213.1| 16S rRNA processing protein RimM [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166625|gb|ADV10163.1| 16S rRNA processing protein RimM [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 199
Score = 210 bits (537), Expect = 5e-53, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M KL V MA IG HG+ GE+ + ++ P+ L Y LY+ D R +I+ + N
Sbjct: 1 MSKLQNPVQMAVIGAAHGIKGELRVKTFTGEPLALADYGPLYARDGRAFQIVDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGIADRNAAEALAGTELFVDRSMLPDD-GEEDEFYHADLVGLEVRDDTGAVLGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V+NFG G IL++ K LIPFT+ AV +V++ E + +DP AAGL +
Sbjct: 120 VAVHNFGGGDILDVTLGGRKGVLIPFTQAAVPQVSIAEGFVRVDPAAAGLVDDEDGGGPR 179
Query: 180 DCPLDSAGKK 189
+ D G+
Sbjct: 180 EEDFDPKGRP 189
>gi|13473626|ref|NP_105194.1| 16S rRNA-processing protein RimM [Mesorhizobium loti MAFF303099]
gi|21362871|sp|Q98EE0|RIMM_RHILO RecName: Full=Ribosome maturation factor rimM
gi|14024376|dbj|BAB50980.1| putative 16S rRNA processing protein [Mesorhizobium loti
MAFF303099]
Length = 199
Score = 210 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K V MA IG HG+ GE+ + ++ P+ L Y LY+ D R +I + N
Sbjct: 1 MSKPQNPVQMAVIGAAHGIKGELRVKTFTGEPMALADYGPLYARDGRAFQITDIRPANTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI + ++A L +L+ R D+ EEDEF++ DL +E D G G+V
Sbjct: 61 VVVRFKGISDRNAAEALAGTELFVDRSMLPDD-GEEDEFYHADLVGLEVRDDTGTALGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V+NFG G IL++ K LIPFT+ AV +V++ E + +DP+AAGL +
Sbjct: 120 VAVHNFGGGDILDVTLAGRKGVLIPFTQAAVPDVSVAEGFVRVDPVAAGLVEDEDGDAPR 179
Query: 180 DCPLDSAGKK 189
+ D G+
Sbjct: 180 EEDFDPKGRP 189
>gi|254717977|ref|ZP_05179788.1| 16S rRNA-processing protein RimM [Brucella sp. 83/13]
gi|265982920|ref|ZP_06095655.1| ribosome maturation factor rimM [Brucella sp. 83/13]
gi|306838930|ref|ZP_07471757.1| 16S rRNA processing protein RimM [Brucella sp. NF 2653]
gi|306842935|ref|ZP_07475569.1| 16S rRNA processing protein RimM [Brucella sp. BO2]
gi|264661512|gb|EEZ31773.1| ribosome maturation factor rimM [Brucella sp. 83/13]
gi|306286863|gb|EFM58388.1| 16S rRNA processing protein RimM [Brucella sp. BO2]
gi|306406000|gb|EFM62252.1| 16S rRNA processing protein RimM [Brucella sp. NF 2653]
Length = 189
Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 6/191 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNAAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDGDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL ++
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPHAAGLI-----ADEH 175
Query: 180 DCPLDSAGKKS 190
D P +GKK
Sbjct: 176 DTPPHESGKKP 186
>gi|222087527|ref|YP_002546064.1| 16S rRNA processing protein RimM [Agrobacterium radiobacter K84]
gi|254797739|sp|B9JCM0|RIMM_AGRRK RecName: Full=Ribosome maturation factor rimM
gi|221724975|gb|ACM28131.1| 16S rRNA processing protein RimM [Agrobacterium radiobacter K84]
Length = 190
Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats.
Identities = 79/176 (44%), Positives = 112/176 (63%), Gaps = 1/176 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV ++ ++P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGAAQGLRGEVRARAFTSDPTALGDYGHLHSMDGRIFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G++N +A L L+LY +R + D+ELE+DEFF TDLE +E D +G +G V
Sbjct: 61 VIVRFRGVNNRDAAEALNGLELYIERDNLPDDELEDDEFFYTDLEGLEAVDDKGTAYGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GVY+FGAG +LE+K ++ LIPF++ AVLE++L+ KILIDP+AAGL ++
Sbjct: 121 SGVYDFGAGDLLELKGPGKRPVLIPFSEAAVLEIDLEGGKILIDPMAAGLIDSPDD 176
>gi|306843366|ref|ZP_07475967.1| 16S rRNA processing protein RimM [Brucella sp. BO1]
gi|306276057|gb|EFM57757.1| 16S rRNA processing protein RimM [Brucella sp. BO1]
Length = 189
Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 1/183 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + IL+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKAYEILEARVAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+++ ++A L +L+ R DEEL+EDEFF TDL +E D GK +G V
Sbjct: 61 VIVRFKGVNDRNTAEALNGTELFIDRSQLPDEELDEDEFFQTDLIGLEAVDEDGKSYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + I ++P AAGL NP +
Sbjct: 121 SAIFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGIIKVEPYAAGLIADEHDNPPH 180
Query: 180 DCP 182
+
Sbjct: 181 ESG 183
>gi|150398292|ref|YP_001328759.1| 16S rRNA-processing protein RimM [Sinorhizobium medicae WSM419]
gi|150029807|gb|ABR61924.1| 16S rRNA processing protein RimM [Sinorhizobium medicae WSM419]
Length = 206
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 20 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNV 79
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ +A L L+L+ +R + D++L+EDEFF DLE ME DR GK +G V
Sbjct: 80 VVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSV 139
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 140 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 199
Query: 180 DCPL 183
P
Sbjct: 200 PFPT 203
>gi|110635771|ref|YP_675979.1| 16S rRNA-processing protein [Mesorhizobium sp. BNC1]
gi|122965539|sp|Q11CR1|RIMM_MESSB RecName: Full=Ribosome maturation factor rimM
gi|110286755|gb|ABG64814.1| 16S rRNA processing protein RimM [Chelativorans sp. BNC1]
Length = 212
Score = 207 bits (527), Expect = 7e-52, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
++ V +A IG HG+ GEV + ++ +P+ L Y L+ D R L++ + + I
Sbjct: 14 IENPVQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMVDGRVLQVAAIRPAKEVVIV 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+D ++A L L+ R E+LEE+EF+ DL M D +G+ G+V V
Sbjct: 74 RFKGVDGRNAAEALNGEALFVDRSALP-EKLEEEEFYYADLIGMAVLDEKGENLGRVVAV 132
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC- 181
+NFGAG +LE + T +IPFT+ AV +++L N I ID I AGL+N + + +
Sbjct: 133 HNFGAGDLLEFRENSGPTVIIPFTRDAVPDIDLSNNTIRIDSITAGLDNAELSGEEDEAE 192
Query: 182 -PLDSAGKKS 190
P + G +
Sbjct: 193 GPESARGSRP 202
>gi|148251974|ref|YP_001236559.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. BTAi1]
gi|166226426|sp|A5E909|RIMM_BRASB RecName: Full=Ribosome maturation factor rimM
gi|146404147|gb|ABQ32653.1| 16S rRNA processing protein RimM [Bradyrhizobium sp. BTAi1]
Length = 198
Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ KL+ +A IG HG+ GEV + ++ +P+ + Y + + +R + K +
Sbjct: 1 MSKLICVAKIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVAKAREAKDHLV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
AT G+ + ++A L L+LY R E ++DE+++ DL + G G+V
Sbjct: 61 ATIKGVTDRNAAERLNGLELYVPRDRLP--ETDDDEYYHADLIGLAAETTAGAPLGRVLA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
++NFGAG I+EI T ++PFT V V+L +++I+ A +
Sbjct: 119 IHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELPAEIEGEDQDSSDNAGS 178
Query: 182 PLDSA 186
P A
Sbjct: 179 PEGDA 183
>gi|153008278|ref|YP_001369493.1| 16S rRNA-processing protein RimM [Ochrobactrum anthropi ATCC 49188]
gi|166226460|sp|A6WXG0|RIMM_OCHA4 RecName: Full=Ribosome maturation factor rimM
gi|151560166|gb|ABS13664.1| 16S rRNA processing protein RimM [Ochrobactrum anthropi ATCC 49188]
Length = 189
Score = 205 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 3/191 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + +L+
Sbjct: 1 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIAEYGLLYDEQGKSYEVLEARPAKTV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L +L+ R D+EL+EDEFF TDL + D +GK +G V
Sbjct: 61 VVVRFKGINDRNAAEALNGTELFIDRSQLPDDELDEDEFFQTDLIGLLAVDAEGKTYGVV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++L + +L++P AAGL +
Sbjct: 121 SALFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDLDKGTLLVEPYAAGLIAD--DEDER 178
Query: 180 DCPLDSAGKKS 190
KKS
Sbjct: 179 PQNEKKKPKKS 189
>gi|239833041|ref|ZP_04681370.1| 16S rRNA processing protein RimM [Ochrobactrum intermedium LMG
3301]
gi|239825308|gb|EEQ96876.1| 16S rRNA processing protein RimM [Ochrobactrum intermedium LMG
3301]
Length = 212
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 3/190 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M + + + +A IG HG GEV + ++ +P+ + Y +LY + +L+
Sbjct: 25 MPRPENPIQLAVIGAAHGTRGEVRVKTFTGDPLAIADYGLLYDEQGKSYEVLEARPAKTV 84
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L +L+ R D+EL+EDEF+ TDL + D +GK +G V
Sbjct: 85 VVVRFKGINDRNAAEALNGTELFIDRSQLPDDELDEDEFYQTDLIGLLAVDAEGKPYGVV 144
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+++FG G ++E+ ++ LIPFT+ AV E++ + +L++P AAGL +
Sbjct: 145 SALFDFGGGDLIELSEKGKRPMLIPFTEAAVPEIDFDKGILLVEPHAAGLI--AEDEDER 202
Query: 180 DCPLDSAGKK 189
KK
Sbjct: 203 PQGEKKKPKK 212
>gi|118591421|ref|ZP_01548819.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
gi|118436093|gb|EAV42736.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
Length = 184
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 5/180 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
D+ VLMA IG HG+ GEV + Y ++P+ Y + + + R + + + I
Sbjct: 6 DQKVLMAKIGAAHGIRGEVRVKPYGDDPLSFADYGILTTRDGKRSFEVERARVQKTVVIT 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI + + A EL + L+ R E EEDEF+ +DL ++ D+ G+ G++ V
Sbjct: 66 KFKGITDRNQAEELNGIDLFIDRDQLP--EPEEDEFYYSDLTGLDVLDQTGETLGKIIAV 123
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCP 182
+FGAG +LE++ ++F IPFTK V E++L+ ++ + + T + P D P
Sbjct: 124 QDFGAGDLLEVRPKRGRSFYIPFTKDFVPEIDLENGRVCVSLPEDYFSEGTPE-PSTDAP 182
>gi|15966996|ref|NP_387349.1| 16S rRNA-processing protein [Sinorhizobium meliloti 1021]
gi|307302464|ref|ZP_07582221.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti BL225C]
gi|307316206|ref|ZP_07595650.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti AK83]
gi|21362866|sp|Q92L42|RIMM_RHIME RecName: Full=Ribosome maturation factor rimM
gi|15076269|emb|CAC47822.1| Probable 16S rRNA processing protein [Sinorhizobium meliloti 1021]
gi|306898046|gb|EFN28788.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti AK83]
gi|306903134|gb|EFN33724.1| 16S rRNA processing protein RimM [Sinorhizobium meliloti BL225C]
Length = 187
Score = 202 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPAALGDYGNLHSEDGRVFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ +A L L+L+ +R + D++L+EDEFF DLE +E DR GK +G V
Sbjct: 61 VVVRFRGINDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGLEAVDRTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 121 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 180
Query: 180 DCPL 183
P
Sbjct: 181 PFPT 184
>gi|22001903|sp|Q8UBZ8|RIMM_AGRT5 RecName: Full=Ribosome maturation factor rimM
Length = 188
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 73/184 (39%), Positives = 111/184 (60%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ +LMA IG GL GEV + +Y ++P+ L Y L + D R IL++
Sbjct: 1 MAKLENPILMAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V
Sbjct: 61 VVVRFRGINDRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
VY+FGAG +LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL + Q
Sbjct: 121 SAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGLIDNPDDKDQN 180
Query: 180 DCPL 183
Sbjct: 181 GMSP 184
>gi|209573734|sp|A6UE44|RIMM_SINMW RecName: Full=Ribosome maturation factor rimM
Length = 187
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M +L VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ +A L L+L+ +R + D++L+EDEFF DLE ME DR GK +G V
Sbjct: 61 VVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K++IDP AAGL + P
Sbjct: 121 TGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGK 180
Query: 180 DCPL 183
P
Sbjct: 181 PFPT 184
>gi|328541717|ref|YP_004301826.1| ribosome maturation factor rimM [polymorphum gilvum SL003B-26A1]
gi|326411469|gb|ADZ68532.1| Ribosome maturation factor rimM [Polymorphum gilvum SL003B-26A1]
Length = 183
Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 4/181 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNK 58
M +LMA IG HG+ GEV + + ++P+ Y ++ +R ++ +
Sbjct: 1 MSSASDRILMARIGAAHGVRGEVRVKPFGDDPLSFADYGPLETADGSRRFEVVGARVQKT 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F GID+ +A L L LY R+ E +DEF++ DL +E D +G
Sbjct: 61 VVITRFKGIDDRTAAEALNGLDLYVPRERLP--EPGDDEFYHADLIGLEAVDAAASRFGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V V +FGAG +LEI+ ++F +PFT+ V V+L ++++D L+ T ++
Sbjct: 119 VVAVQDFGAGDLLEIRPDRGRSFYVPFTQAFVPTVDLAAGRVVLDLPDDYLSEGTDEDRS 178
Query: 179 Y 179
Sbjct: 179 R 179
>gi|254504892|ref|ZP_05117043.1| 16S rRNA processing protein RimM [Labrenzia alexandrii DFL-11]
gi|222440963|gb|EEE47642.1| 16S rRNA processing protein RimM [Labrenzia alexandrii DFL-11]
Length = 186
Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKR 59
K + VLMA IG HG+ GEV + + ++P+ Y + + + + ++ +
Sbjct: 3 SKETQKVLMAKIGAAHGVRGEVRVKPFGDDPLSFTDYGVLTTKDGKQSFEVVSARVQKTV 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + + + A EL +LY R E +EDEF+ +DL ++ D QG+ G++
Sbjct: 63 VVTKFKEVTDRNRAEELNGTELYIDRDQLP--ETDEDEFYYSDLNGLDVKDPQGELLGKI 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V +FGAG + EI+ KTF IPFTK V +NL ++ D L++
Sbjct: 121 VAVQDFGAGDLFEIRPKRGKTFYIPFTKEFVPTINLDSGFVVADLPEDYLSDEKPDPESS 180
Query: 180 DCPLD 184
D
Sbjct: 181 TDSPD 185
>gi|146337523|ref|YP_001202571.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. ORS278]
gi|166226427|sp|A4YK99|RIMM_BRASO RecName: Full=Ribosome maturation factor rimM
gi|146190329|emb|CAL74325.1| 16S rRNA processing protein, putative function [Bradyrhizobium sp.
ORS278]
Length = 199
Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ KL+ +A IG HG+ GEV + ++ +P+ + Y + + +R + K +
Sbjct: 2 MSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLV 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F GI + ++A L ++LY R E ++DE+++ DL + G G+V
Sbjct: 62 ASFKGITDRNAAERLNGVELYVPRDRLP--ETDDDEYYHADLIGLAAETTAGAPLGRVLA 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++NFGAG I+EI T ++PFT V V+L +++I+
Sbjct: 120 IHNFGAGDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELPDEI 166
>gi|325294071|ref|YP_004279935.1| Ribosome maturation factor rimM [Agrobacterium sp. H13-3]
gi|325061924|gb|ADY65615.1| Ribosome maturation factor rimM [Agrobacterium sp. H13-3]
Length = 188
Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ +LMA IG GL GEV + +Y + P+ L Y L S D R IL++
Sbjct: 1 MAKLENPILMAKIGGAQGLRGEVRVSTYTDEPMALGDYGNLVSADGRVFEILEVREGKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F GI++ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V
Sbjct: 61 VVVRFRGINDRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
VY+FGAG +LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL + +
Sbjct: 121 SAVYDFGAGDLLELKGAGRRPALIPFSEAAVLEIDLEARRILIDPMAAGLIDNPDDKDET 180
Query: 180 DCPL 183
Sbjct: 181 GASP 184
>gi|227823735|ref|YP_002827708.1| 16S rRNA-processing protein RimM [Sinorhizobium fredii NGR234]
gi|254797759|sp|C3MAG2|RIMM_RHISN RecName: Full=Ribosome maturation factor rimM
gi|227342737|gb|ACP26955.1| 16S rRNA processing protein RimM [Sinorhizobium fredii NGR234]
Length = 187
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 1/184 (0%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M KL+ VLMATIG GL GEV + S+ ++P L Y L+S D R +L++
Sbjct: 1 MTKLENPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEVRETKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GI++ +A L L+L+ +R + D++L+EDEFF DLE +E D GK +G V
Sbjct: 61 VIVRFRGINDRSAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGLEAVDGTGKSYGSV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
GV++FGAG +LE+K + LIPFT+++VLE++L+ K+L+DP+AAGL ++
Sbjct: 121 TGVFDFGAGDLLELKGPGRRPVLIPFTEWSVLEIDLEAGKLLVDPVAAGLVEDKDESLDK 180
Query: 180 DCPL 183
P
Sbjct: 181 QFPT 184
>gi|295399788|ref|ZP_06809769.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111700|ref|YP_003990016.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
gi|294978191|gb|EFG53788.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216801|gb|ADP75405.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
Length = 172
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
++K + I THG+ GEV + S + P + + Y+ + + +K +R +
Sbjct: 1 MEKWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFMEKSQEPIEVIVKSHRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + +F G DNI+ + + L EL E E++ ++ +G+
Sbjct: 61 KSFDLLSFEGYDNINLVEKFKGAMLKVPESQL--GELNEGEYYFHEIIGCTVVTEEGETV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + +K K LIP+ + V V+++ I I P+ L
Sbjct: 119 GTVSEILTPGANDVWVVKRNNGKEALIPYIEDIVKNVDVEAKIITIRPMEGLLE 172
>gi|239826593|ref|YP_002949217.1| 16S rRNA-processing protein RimM [Geobacillus sp. WCH70]
gi|259585645|sp|C5D8U4|RIMM_GEOSW RecName: Full=Ribosome maturation factor rimM
gi|239806886|gb|ACS23951.1| 16S rRNA processing protein RimM [Geobacillus sp. WCH70]
Length = 172
Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
++K + I THG+ GEV + S + P + + Y+ + + +K +R +
Sbjct: 1 MEKWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFMEKSKEPVAVTVKSHRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G DNI+ + + L EL+E E++ ++ +G+
Sbjct: 61 KSFDLLAFEGYDNINLVEKFKGAMLKVPESQL--GELDEGEYYFHEIIGCTVVTEEGETI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + +K K LIP+ + V V+++ I I P+ L
Sbjct: 119 GTVKEILTPGANDVWVVKRDNGKEVLIPYIEDVVKNVDVETKTITIRPMEGLLE 172
>gi|49476238|ref|YP_034279.1| 16s rRNA processing protein rimM [Bartonella henselae str.
Houston-1]
gi|59798261|sp|Q6G1R8|RIMM_BARHE RecName: Full=Ribosome maturation factor rimM
gi|49239046|emb|CAF28346.1| 16s rRNA processing protein rimM [Bartonella henselae str.
Houston-1]
Length = 180
Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats.
Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V + ++ P L Y LY + I+ + + K I
Sbjct: 7 KLKNKVCLAIIGMPHGIKGDVLLKILSSEPQRLKTYGTLYDDRGHSYEIVMLRMQKKNAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G+++ +A LR + LY R D+ L EDEF+ DL + D G+ G+V G
Sbjct: 67 VHFKGVEDRSAAEALRGIHLYVARDQLVDD-LTEDEFYQVDLIGLRVQDCTGRILGEVSG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
++NFGAG +LE++ KT LIPF+K AVLEV + +++DP+AAGL++
Sbjct: 126 LFNFGAGDLLEMRLNTGKTVLIPFSKAAVLEVCIASGFLVVDPVAAGLSDGGENT 180
>gi|27375594|ref|NP_767123.1| 16S rRNA-processing protein RimM [Bradyrhizobium japonicum USDA
110]
gi|46397690|sp|Q89X39|RIMM_BRAJA RecName: Full=Ribosome maturation factor rimM
gi|27348731|dbj|BAC45748.1| 16S rRNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 173
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 4/174 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ LV +A IG HG+ G V + ++ +P + RY +L + R+ + + +
Sbjct: 1 MSALVCVARIGAAHGVRGAVKLWTFTEDPFAIKRYGPLLSKDGKRQFEVAQAREAKDHLV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ATF G+ A L ++LY R+ +EDE+++TDL + G+ G+V
Sbjct: 61 ATFKGVTTRDEAERLNGIELYVAREKLPAT--DEDEYYHTDLIGLAAVTTDGEPLGRVLA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
++NFGAG I+EI + L+PF+ V EV++ ++++ + +
Sbjct: 119 IHNFGAGDIIEIAPPKGASLLLPFSNAVVPEVDVAGGRVVVALPQEIAGDEAEE 172
>gi|163869251|ref|YP_001610507.1| 16S rRNA-processing protein RimM [Bartonella tribocorum CIP 105476]
gi|189040126|sp|A9IZB5|RIMM_BART1 RecName: Full=Ribosome maturation factor rimM
gi|161018954|emb|CAK02512.1| 16S rRNA processing protein [Bartonella tribocorum CIP 105476]
Length = 181
Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V++ + +P Y LY + R I+ + + I
Sbjct: 7 KLKNKVYLAIIGMPHGIRGDVFVKILSADPQRFKSYGTLYDDMGRSYEIVTLRTQKNNAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G++N ++A L+ + LY R D+ L EDEF+ DL + + GK G+VCG
Sbjct: 67 VRFKGVENRNAAESLKGIHLYVMRDQLIDD-LREDEFYQVDLIGLRVQEYGGKILGEVCG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
NFGAG +LEI+ K LIPF+K AV E+ + +++DP+AAGL + +
Sbjct: 126 FCNFGAGDLLEIRLNTGKRMLIPFSKVAVPEICMDSGFLIVDPMAAGLRDGEEND 180
>gi|316931784|ref|YP_004106766.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris DX-1]
gi|315599498|gb|ADU42033.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris DX-1]
Length = 176
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P +N Y + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVNDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R E DE+++ DL + G G+V ++N
Sbjct: 65 KGVTTRDEAERLNGVELYVARDKLPPTE--ADEYYHADLIGLAAVTTAGDALGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
FGAG I+EI T L+PFT V V+L +++I+ + + T +P+
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIE-LPNEIEGDTPNHPE 175
>gi|115522357|ref|YP_779268.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
BisA53]
gi|122297959|sp|Q07UU6|RIMM_RHOP5 RecName: Full=Ribosome maturation factor rimM
gi|115516304|gb|ABJ04288.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris
BisA53]
Length = 176
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 5/175 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIAT 63
K + +A IG HG+ G + + + +P+ + Y + + +R + +AT
Sbjct: 4 KRICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGSRRFEVETAREAKDHLVAT 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + A L ++LY R E +E E+++ DL + G+ G+V ++
Sbjct: 64 LKGVASRDDAVRLNGIELYIDRDQLP--ETDEGEYYHADLIGLAAVTAAGEPLGKVAAIH 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
NFGAG I+EI T L+PFT V V+L+ +++I+ + + T +P+
Sbjct: 122 NFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLEGGRVVIE-MPGEIEGDTPNHPE 175
>gi|240851323|ref|YP_002972726.1| 16S rRNA processing protein RimM [Bartonella grahamii as4aup]
gi|240268446|gb|ACS52034.1| 16S rRNA processing protein RimM [Bartonella grahamii as4aup]
Length = 185
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL V +A IG HG+ G+V++ + P Y LY + R I+ + + + I
Sbjct: 7 KLKNKVYLAIIGMPHGIKGDVFVKILSAEPQRFKSYSTLYDDMGRSYEIVTLRIQKNKAI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G++N + A L+ ++LY R D+ L+EDEF+ DL + D GK G+VCG
Sbjct: 67 VRFKGVENRNVAESLKGIRLYVMRDQLIDD-LDEDEFYQVDLIGLRVQDCGGKVVGEVCG 125
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+NFGAG +LEI+ K LIPF+K AV E+ + +++DP+AAGL++ + +
Sbjct: 126 FFNFGAGDLLEIRLNTSKRVLIPFSKVAVPEICMDSGFLVVDPMAAGLSDGGDNDKKE 183
>gi|39933320|ref|NP_945596.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
CGA009]
gi|59798745|sp|Q6ND66|RIMM_RHOPA RecName: Full=Ribosome maturation factor rimM
gi|39652945|emb|CAE25687.1| putative 16S rRNA processing protein [Rhodopseudomonas palustris
CGA009]
Length = 176
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P ++ Y + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R E DE+++ DL + G G+V ++N
Sbjct: 65 KGVTTRDEAERLNGVELYVARDKLPPTE--ADEYYHADLIGLAAVTTTGDPLGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
FGAG I+EI T L+PFT V V+L +++I+P + T +P+
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAVGQVVIEPPNE-IEGDTPNHPE 175
>gi|192288675|ref|YP_001989280.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris TIE-1]
gi|238692575|sp|B3Q855|RIMM_RHOPT RecName: Full=Ribosome maturation factor rimM
gi|192282424|gb|ACE98804.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris TIE-1]
Length = 176
Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G V + S+ +P ++ Y + R+ I + T
Sbjct: 5 LICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L ++LY R E DE+++ DL + G G+V ++N
Sbjct: 65 KGVATRDEAERLNGVELYVARDKLPPTE--ADEYYHADLIGLAAVTTAGDALGKVVAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
FGAG I+EI T L+PFT V V+L +++I+ + + T +P+
Sbjct: 123 FGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVIE-LPNEIEGDTPNHPE 175
>gi|228998618|ref|ZP_04158205.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
gi|228761086|gb|EEM10045.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
Length = 188
Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M+ + K + I THG+ GE+ + S + P + + Y+ + L + + +
Sbjct: 15 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASH 74
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G +N+ +L+ + + EL E E++ ++ + +G
Sbjct: 75 RQHKTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQL--GELAEGEYYYHEIIGCKVVTEEG 132
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 133 EDLGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNIENKLVTIHVMEGLL 188
>gi|85714455|ref|ZP_01045443.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
gi|85698902|gb|EAQ36771.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
Length = 202
Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
++ V +A IG HGL GEV + ++ +P+ + RY + + R+L + +A
Sbjct: 31 ERRVCVARIGAAHGLRGEVRLWTFTEDPMSVMRYGPLTTRDGARQLEVAHARAAKDHLVA 90
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF+G+ A L +LY R + ++DEF++ DL + D G G V +
Sbjct: 91 TFTGVTTREEAERLNGTELYVARDKLP--KTDDDEFYHADLIGLAAVDAAGTTLGTVAAI 148
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+NFGAG I+EI T L+PFT V V++ +++I+ I +
Sbjct: 149 HNFGAGDIIEIAPAQGPTLLLPFTDAVVPTVDIAGGRVVIE-IPGEIGGDKPD 200
>gi|315121878|ref|YP_004062367.1| 16S rRNA-processing protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495280|gb|ADR51879.1| 16S rRNA-processing protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 190
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 126/190 (66%), Positives = 158/190 (83%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
MVK +KLVL+ATIGTTHGL GEVY++SYA+NP+DL+RY+LYS+D +E +IL +Y+ NKR
Sbjct: 1 MVKSEKLVLIATIGTTHGLKGEVYVNSYASNPMDLSRYILYSDDAKEFKILDIYQNNKRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IATF GI +IHSA +LR LKLYA+RQDFKDEELEEDEFFN DLEE+ETFD QGKYWG++C
Sbjct: 61 IATFDGIYDIHSAEKLRHLKLYARRQDFKDEELEEDEFFNADLEELETFDLQGKYWGKIC 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
G+Y+FGAG++LE K++ EK FLIPFTK VL VNL+ENKILID ++AGL+ T K+ ++
Sbjct: 121 GIYDFGAGAVLEFKDSKEKKFLIPFTKSTVLSVNLKENKILIDSVSAGLDCMTKKDKNHE 180
Query: 181 CPLDSAGKKS 190
C S G
Sbjct: 181 CQSSSPGDIP 190
>gi|84501321|ref|ZP_00999526.1| 16S rRNA processing protein RimM [Oceanicola batsensis HTCC2597]
gi|84390612|gb|EAQ03100.1| 16S rRNA processing protein RimM [Oceanicola batsensis HTCC2597]
Length = 166
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND-NRELRILKMYRKNKRFIA 62
+ + V + I ++G+ GEV + S+ +P + Y + D + F A
Sbjct: 1 MTETVCVGAIAGSYGVRGEVRLKSFCADPEAIAEYGPLTGDNGASYSVTLTRPIKNGFAA 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ A L+ ++L+A R E EDEF++ DL + D G G + V
Sbjct: 61 RLGGVATKEEADALKGVQLFAPRDRLPATE--EDEFYHADLIGLRVVDTGGTEIGTIRAV 118
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GAG +LEIK + T L+PFT+ V V+L K++ DP
Sbjct: 119 MDHGAGDLLEIKGPGLKNTVLLPFTRACVPTVDLAGGKVVADPPEGL 165
>gi|228992570|ref|ZP_04152497.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
gi|228767204|gb|EEM15840.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
Length = 188
Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M+ + K + I THG+ GE+ + S + P + + Y+ + L + + +
Sbjct: 15 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASH 74
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G +N+ +L+ + + EL E E++ ++ + +G
Sbjct: 75 RQHKTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQL--GELAEGEYYYHEIIGCKVVTEEG 132
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 133 EDLGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 188
>gi|254472163|ref|ZP_05085563.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
gi|211958446|gb|EEA93646.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
Length = 185
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 3/184 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKR 59
K + +LMA IG HG+ GEV + + ++P+ Y + +R+ ++ + +
Sbjct: 3 NKPEDRILMAQIGAAHGIRGEVRVKPFGDDPLSFGDYGKLESEDGSRKFKVKRARVQKNV 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+++ + A L LKLY R+ + E +EDEF+++DL ++ D + G V
Sbjct: 63 VVTKFEGVNDRNEAEALNGLKLYIPRERLPETE-DEDEFYHSDLIGLKALDENKEQIGTV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+ +FGAG ++EI K+ L PFTK V +NL+E + + +
Sbjct: 122 LALLDFGAGDLIEIAPKSGKSLLFPFTKAVVPVINLKEGFVEVHAPEGFYEEGEKEPEDG 181
Query: 180 DCPL 183
P
Sbjct: 182 SEPS 185
>gi|299133091|ref|ZP_07026286.1| 16S rRNA processing protein RimM [Afipia sp. 1NLS2]
gi|298593228|gb|EFI53428.1| 16S rRNA processing protein RimM [Afipia sp. 1NLS2]
Length = 180
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNK 58
M K + + +A IG HG+ GEV + + + + + Y S + R+ + +
Sbjct: 1 MAKAAQKICVAKIGAAHGVRGEVRLWPFTEDLLAVLHYGPLSTKDGARQFEVARARAAKD 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+AT G+ + +A L ++LY R E ++ E+++ DL + D QG G
Sbjct: 61 HLVATLKGVADRDAAERLNGIELYISRDALP--ETDDGEYYHADLIGLAAIDAQGASLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V ++NFGAG I+EI + L+PFT V V+L ++++ +
Sbjct: 119 VTAIHNFGAGDIIEIAPKSGPSLLLPFTNAVVPTVDLAAGHVIVELPNEIEGDGPDSTDS 178
Query: 179 YD 180
Sbjct: 179 AP 180
>gi|85706778|ref|ZP_01037870.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
gi|85668836|gb|EAQ23705.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
Length = 169
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNK 58
M D+ + + IG G+ GEV + S+ P D+ Y + + R+ I +
Sbjct: 1 MSDSDR-ICVGAIGGAFGVRGEVRLKSFTAMPEDIASYSPLTSEDGTRQFDISLTGQTTN 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F A SGI +A LR +LYA R + L +DE+++ DL +E FD G G+
Sbjct: 60 GFTAHLSGIATKEAADALRGTRLYALRAQLPN--LPDDEYYHADLIGLEVFDTGGTLLGR 117
Query: 119 VCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V V N GA +LEI T L+PFT AV V+L +I+ DP +
Sbjct: 118 VKAVLNHGASDLLEIHGPGLSATVLLPFTLEAVPTVDLASGRIIADPPDGLI 169
>gi|260428907|ref|ZP_05782884.1| 16S rRNA processing protein RimM [Citreicella sp. SE45]
gi|260419530|gb|EEX12783.1| 16S rRNA processing protein RimM [Citreicella sp. SE45]
Length = 168
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + TI G++GEV + S+ +P + Y + + R + F
Sbjct: 1 MSDTICVGTIAGAFGVHGEVRLKSFTADPEAIADYAPLTNEDGTRSFDLQITRAVKGGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG+ + A LR LY R L +DEF++TDL + +D G G+V
Sbjct: 61 ARLSGVRSKEEADALRGTGLYVPRDRLPA--LPDDEFYHTDLIGLAVYDTGGVELGRVKA 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V N GA +LE++ KT L+PFT+ V V+L +I+ DP L
Sbjct: 119 VLNHGAADLLELQLPGGSKTVLLPFTRAVVPTVDLASGRIVADPPEGLLE 168
>gi|56419735|ref|YP_147053.1| 16S rRNA-processing protein RimM [Geobacillus kaustophilus HTA426]
gi|67461272|sp|Q5L0P5|RIMM_GEOKA RecName: Full=Ribosome maturation factor rimM
gi|56379577|dbj|BAD75485.1| 16S rRNA processing protein [Geobacillus kaustophilus HTA426]
Length = 175
Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M +++ + I THG+ GEV + S + P + + Y+ D + + +K +
Sbjct: 1 MKAMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRERDTEPIEVTVKSH 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K F + +F G D+I+ + L EL E E++ ++ G
Sbjct: 61 RVHKSFDLLSFEGYDSINDVERFKGAMLKVPESQL--GELAEGEYYFHEIIGCTVVTEGG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V + GA + ++ LIP+ VL V+ + I+I P+ L
Sbjct: 119 ETIGAVKEILTPGANDVWVVRREDGSEALIPYIDEVVLHVDPERKTIIIRPMEGLLE 175
>gi|121602541|ref|YP_988423.1| 16S rRNA processing protein RimM [Bartonella bacilliformis KC583]
gi|166226425|sp|A1UR20|RIMM_BARBK RecName: Full=Ribosome maturation factor rimM
gi|120614718|gb|ABM45319.1| 16S rRNA processing protein RimM [Bartonella bacilliformis KC583]
Length = 191
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRF 60
+L+K VL+A I HG+ G+V ++ P L Y VLY + R I+ M
Sbjct: 6 KELNKAVLLAVIRAAHGIRGDVVVNLLGAEPQRLKTYGVLYDDKGRLYEIVSMRVHKNNV 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F G+D+ +A L+ ++LY +R F D+ L+ DEF+ DL + +D + G+V
Sbjct: 66 IVRFKGVDDRSTAEALKGVQLYIERDQFADD-LDTDEFYQIDLIGLRVYDNTNQLLGEVS 124
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G +NFGAG +LE++ KT LIPF+K AV E+ + +++DP+AAGL +
Sbjct: 125 GFFNFGAGDLLEVRLISHKTELIPFSKAAVPEICVASGFLVVDPVAAGLFSDPHS 179
>gi|75676965|ref|YP_319386.1| 16S rRNA processing protein RimM [Nitrobacter winogradskyi Nb-255]
gi|109893027|sp|Q3SNV7|RIMM_NITWN RecName: Full=Ribosome maturation factor rimM
gi|74421835|gb|ABA06034.1| 16S rRNA processing protein RimM [Nitrobacter winogradskyi Nb-255]
Length = 173
Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 5/175 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ V +A IG HGL GEV + ++ +P+ + RY S + R+L + + I
Sbjct: 1 MTARVCVARIGAAHGLRGEVRLWTFTEDPMSVTRYGPLSTKDGARQLEVSHARAASDHLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
AT +G+ A L +LY R E +E EF++ DL + FD G G V
Sbjct: 61 ATLTGVTTREEAERLNGTELYVARDKLP--ETDEGEFYHADLIGLAAFDAAGTALGTVAA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
++NFGAG I+EI T ++PFT V V++ +++I+ A ++ +
Sbjct: 119 IHNFGAGDIIEIAPARGPTLMLPFTDAVVPIVDIAGGRVVIEAPAE-IDGEEPNS 172
>gi|209883426|ref|YP_002287283.1| 16S rRNA processing protein RimM [Oligotropha carboxidovorans OM5]
gi|209871622|gb|ACI91418.1| 16S rRNA processing protein RimM [Oligotropha carboxidovorans OM5]
Length = 174
Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIATFS 65
+ +A IG HG+ GEV + + +P+ + Y S + ++ +L+ +AT
Sbjct: 7 ICVAKIGAAHGVRGEVRLWPFTEDPLAVLHYGPLSTRDGAKQFTVLRARAAKDHLVATLD 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ N A L ++LY R D +E E+++ DL + D QGK G + ++NF
Sbjct: 67 GVANRDDAERLNGIELYVSRDALPDT--DEGEYYHADLIGLAAVDPQGKSIGTIIAIHNF 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
GAG I+EI T L+PFT V ++L ++I+
Sbjct: 125 GAGDIIEIAPNNGPTLLLPFTNAVVPTIDLAAGHVVIELPGEIEGEDEPS 174
>gi|119386589|ref|YP_917644.1| 16S rRNA processing protein RimM [Paracoccus denitrificans PD1222]
gi|171704477|sp|A1B8V4|RIMM_PARDP RecName: Full=Ribosome maturation factor rimM
gi|119377184|gb|ABL71948.1| 16S rRNA processing protein RimM [Paracoccus denitrificans PD1222]
Length = 167
Score = 193 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFI 61
+ + V + I G+ GEV + S+ + P D+ Y + NR I
Sbjct: 1 MTERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLTRPVTGGLG 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG++ A L+ + L+A R L +DEF++ DL + +D G G+V
Sbjct: 61 ARLSGVETREQAEALKGVTLWADRDKLPA--LPDDEFYHADLIGLSVYDTGGALLGKVRA 118
Query: 122 VYNFGAGSILEIKNTMEKTF-LIPFTKFAVLEVNLQENKILIDPIAA 167
+Y+ GAG ILEI + L+PFT+ V V+L +I+ DP
Sbjct: 119 IYDHGAGDILEIFGPGRRQVLLLPFTRAFVPTVDLAAGRIVADPPEE 165
>gi|269127627|ref|YP_003300997.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
gi|268312585|gb|ACY98959.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
Length = 172
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRF 60
D V++ IG HG+ GEV +D ++P + D L + + R
Sbjct: 3 DDQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+D+ +A +LR L D E + DEF + +L + G G V
Sbjct: 63 LLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLE-DPDEFHDHELIGLTAVTTDGTPVGTVR 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ ++ A +L I+ L+PF V EV++ +I+IDP L+ +
Sbjct: 122 DILHY-AQDLLVIRRETGGEALVPFVAALVPEVDVAGGRIVIDPPPGLLDES 172
>gi|83951191|ref|ZP_00959924.1| putative 16S rRNA processing protein [Roseovarius nubinhibens ISM]
gi|83839090|gb|EAP78386.1| putative 16S rRNA processing protein [Roseovarius nubinhibens ISM]
Length = 167
Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + I G+ GE+ + S+ P D+ Y + R + +
Sbjct: 1 MTDKICVGAIAGAFGVRGELRLKSFTATPEDIATYGPLETEDGARSFAVTLTGQTTNALT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG+ + A LR +LY R L +DE+++ DL +E FD G G+V
Sbjct: 61 ARLSGVQSKEEADALRGTQLYVARDRLPS--LPDDEYYHADLIGLEVFDSGGALLGRVKA 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LEI + T L+PFT+ AV V+L +I+ DP
Sbjct: 119 VLNHGASDLLEIHGPGLKSTVLLPFTRAAVPTVDLATGRIVADPPEGL 166
>gi|319404834|emb|CBI78435.1| Ribosome maturation factor rimM [Bartonella rochalimae ATCC
BAA-1498]
Length = 171
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+ G+V + ++NP L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGIKGDVVVKVLSSNPESLKSYSVFYDETERSYEVVSFRMQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L+EDEF+ DL + ++ ++ G+V G
Sbjct: 61 HFKGIEERSAAESLRGIKLYVERNQLADD-LDEDEFYQIDLIGLCVYNCAKQFLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
+NFGAG ++EI+ K LI F+K AV E+ + +++DPIAAGL +
Sbjct: 120 FNFGAGDLIEIQLVSGKKVLISFSKAAVPEICVASGFLIVDPIAAGLFHDQE 171
>gi|260432698|ref|ZP_05786669.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416526|gb|EEX09785.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
Length = 167
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 5/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRFI 61
+ L+ + ++ ++G+ GEV + SY P D+ Y ++++ R ++ F
Sbjct: 1 MSDLICVGSVAGSYGVRGEVRLKSYCAVPEDIETYSPLTDESGTERYPLIITRAIKNGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A L+ L+LYA+R L +DEF++ DL +E +D G G+V
Sbjct: 61 ARLGGVETKEQADALKGLRLYARRAQLPS--LPDDEFYHADLIGLEVYDTGGTLLGKVKS 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V N GA +LE+ + T L+PFTK AV V+L+ +I+ DP L
Sbjct: 119 VQNHGADDLLELHGPGLKTTVLLPFTKAAVPTVDLEAGRIVADPPDGLL 167
>gi|114763698|ref|ZP_01443092.1| 16S rRNA processing protein RimM [Pelagibaca bermudensis HTCC2601]
gi|114543699|gb|EAU46712.1| 16S rRNA processing protein RimM [Roseovarius sp. HTCC2601]
Length = 173
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKR 59
+ + + + TI G+NGEV + S+ P L Y + + +R +
Sbjct: 4 ASVSETICVGTIAGAFGVNGEVRLKSFTAEPEALAEYAPLTTEDGSRSFEVQITRSVKGG 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F A SG+ + A LR LYA R L +DEF++TDL + FD G G+V
Sbjct: 64 FAARLSGVRSKEEADALRGTGLYAPRDRLPT--LPDDEFYHTDLIGLAVFDTGGAELGRV 121
Query: 120 CGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V N GA +LE+ + KT L+PFT+ AV V+L +I+ DP L
Sbjct: 122 KAVLNHGATDLLELTAPGQSKTVLLPFTREAVPTVDLASGRIVADPPEGLLE 173
>gi|163743781|ref|ZP_02151154.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis 2.10]
gi|161382930|gb|EDQ07326.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis 2.10]
Length = 167
Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + + I ++G+ GEV + S+ P D+ Y S + ++ I + F
Sbjct: 1 MTEQICVGAISGSYGVRGEVRLKSFCAMPEDIEDYSPLSTEDGSQTYTITLVRAIKNGFT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI+ A L+ ++L+A R L +DE+++TDL +E +D G G V
Sbjct: 61 ARIGGIETKEQADALKGIRLFAPRDRLPS--LPDDEYYHTDLMGLEVYDTGGTLLGTVKS 118
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LEI KT L+PFT AV V+L +I+ DP
Sbjct: 119 VQNHGASDLLEITIPADSKTVLLPFTLAAVPTVDLAAGRIIADPPEGL 166
>gi|86747477|ref|YP_483973.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris HaA2]
gi|109893041|sp|Q2J398|RIMM_RHOP2 RecName: Full=Ribosome maturation factor rimM
gi|86570505|gb|ABD05062.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris HaA2]
Length = 182
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 5/175 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIAT 63
+ V +A IG HG+ G + + S+ +P+ + Y S + R I + T
Sbjct: 10 RQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATARAAKDHLVVT 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ A L L+LY R E +DE+++ DL + G+ G+V ++
Sbjct: 70 LKGVTTRDEAVRLNGLELYVPRDALPPTE--DDEYYHADLIGLPAITTSGEPLGRVLAIH 127
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
NFGAG I+EI T L+PFT V V+L +++I+ + A + T +P+
Sbjct: 128 NFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLAAGQVIIE-LPAEIEGDTPNHPE 181
>gi|121533793|ref|ZP_01665620.1| 16S rRNA processing protein RimM [Thermosinus carboxydivorans Nor1]
gi|121307784|gb|EAX48699.1| 16S rRNA processing protein RimM [Thermosinus carboxydivorans Nor1]
Length = 303
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRF 60
+ LV + I HG+ G+V I + P + Y +D L + + +
Sbjct: 138 NMPEDLVAIGKIVAPHGVRGDVRIIPLTDFPERFQQLKTAYFDDGTRLSVESARQHKQFI 197
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G+ + ++ LR + R+D L E ++ ++ ++ +D G Y G+V
Sbjct: 198 LLKFKGLQDRNAVENLRGKLVKVPRKDL--VPLPEGHYYIFEIIGLKVYDIDGAYLGKVT 255
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V G+ + +++ + LIP K V E++L + +++I P
Sbjct: 256 DVMQTGSNDVYVVEDCD-RPLLIPAIKEVVKEIDLAQGRMVIKPQEEW 302
>gi|149201387|ref|ZP_01878362.1| 16S rRNA processing protein RimM [Roseovarius sp. TM1035]
gi|149145720|gb|EDM33746.1| 16S rRNA processing protein RimM [Roseovarius sp. TM1035]
Length = 169
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNK 58
M D+ + + IG G+ GEV + S+ P D+ Y S + R + +
Sbjct: 1 MSDSDR-ICVGAIGGAFGVRGEVRLKSFTAMPEDIAAYSPLSTEDGARAFDVTLTGQTTN 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A SGI +A LR ++LYA R + L +DEF++ DL +E +D G G+
Sbjct: 60 GLTAQLSGISTKEAADALRGMRLYALRAQLPN--LPDDEFYHADLIGLEVYDTGGAVLGR 117
Query: 119 VCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V N GA ILEI T L+PFT AV V+L +I+ DP
Sbjct: 118 VKAVLNHGASDILEIHAPGMSATILLPFTTEAVPTVDLAAGRIIADPPDGL 168
>gi|92119040|ref|YP_578769.1| 16S rRNA-processing protein RimM [Nitrobacter hamburgensis X14]
gi|122416838|sp|Q1QHI8|RIMM_NITHX RecName: Full=Ribosome maturation factor rimM
gi|91801934|gb|ABE64309.1| 16S rRNA processing protein RimM [Nitrobacter hamburgensis X14]
Length = 173
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 5/174 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ V +A IG HGL GEV + ++ +PI + RY S + R+ + +
Sbjct: 1 MTARVCVARIGAAHGLRGEVRLWTFTEDPIAVTRYGSLSTKDGARQFEVTHAREVKDYLV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
AT +G+ A L LY R +E EF++ DL + D GK G V
Sbjct: 61 ATLTGVTTREEAERLNGTDLYVARDKLPAT--DEGEFYHADLIGLAAVDVAGKPLGTVAA 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
++NFGAG I+EI T ++PFT V V++ +++I+ + ++ T
Sbjct: 119 IHNFGAGDIIEIAPAHGPTLMLPFTDAVVPTVDIAGGRVVIE-MPGEIDGDTPD 171
>gi|90421747|ref|YP_530117.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris
BisB18]
gi|109893042|sp|Q21CT8|RIMM_RHOPB RecName: Full=Ribosome maturation factor rimM
gi|90103761|gb|ABD85798.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris
BisB18]
Length = 176
Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 4/174 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ G V + + +P+ + Y S + R + +AT
Sbjct: 4 DKICVARIGAPHGVRGAVKLWPFTADPLAVLDYGPLSTKDGKRSFEVETAREAKGHLVAT 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + A L ++LY R E E E+++ DL + D G G+V ++
Sbjct: 64 LQGVVSREDAERLNGVELYIDRAQLPPPE--EGEYYHADLIGLAAVDAAGAPIGKVLAIH 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
NFGAG I+EI T L+PFT V V++ +++I+ A + +
Sbjct: 122 NFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDIASGRVVIELPAEIEGDDPAQAD 175
>gi|302558141|ref|ZP_07310483.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
gi|302475759|gb|EFL38852.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
Length = 191
Score = 190 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTDPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + + A LR+ L A + E +EDE+++ L +++ + G+ G++ +
Sbjct: 63 FEGVRDRNGAEALRNTLLIADVDPDERPE-DEDEYYDHQLIDLDVVTKDGEEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + ++ +PF + V E++L+E + +IDP +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVYVPFVEEIVTEIDLEEQRAVIDPPPGLIDDRAETASARDAAE 181
Query: 184 DSAGKKS 190
D G
Sbjct: 182 DERGAAG 188
>gi|158425577|ref|YP_001526869.1| 16S rRNA-processing protein RimM [Azorhizobium caulinodans ORS 571]
gi|172048026|sp|A8IKV0|RIMM_AZOC5 RecName: Full=Ribosome maturation factor rimM
gi|158332466|dbj|BAF89951.1| 16S rRNA processing protein [Azorhizobium caulinodans ORS 571]
Length = 177
Score = 190 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN-RELRILKMYRKNKRFIA 62
+ +L+A IG HG+ GEV + ++ +P+ L RY L R ++ + F+A
Sbjct: 1 MTDRILIARIGAPHGVKGEVRLFAFGEDPLALKRYPLTDESGARRFKVQSLRAAKDHFVA 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI + ++A L + L+ R E +ED F++ DL + D+ G G V +
Sbjct: 61 RLEGIADRNAAEALTNTDLFVPRDALPAAE-DEDTFYHADLMGLRVEDQSGALLGTVLAM 119
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
++FGAG +LE +T L+PFTK AV V++ +I++ P + + P D
Sbjct: 120 HDFGAGDVLEYTPEGGGRTLLLPFTKAAVPVVDVPGGRIVVVP-----DTNPDETPPEDA 174
Query: 182 P 182
Sbjct: 175 D 175
>gi|49474760|ref|YP_032802.1| 16s rRNA processing protein rimM [Bartonella quintana str.
Toulouse]
gi|59798255|sp|Q6FYH3|RIMM_BARQU RecName: Full=Ribosome maturation factor rimM
gi|49240264|emb|CAF26734.1| 16s rRNA processing protein rimM [Bartonella quintana str.
Toulouse]
Length = 197
Score = 190 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRF 60
KL V +A I HG+ G+V + ++ P L Y +LY + R I+ + +
Sbjct: 6 KKLKNKVYLAIIDLPHGVKGDVLVKVWSAEPQRLKTYGILYDDTGRPYEIVVLRVQKNNA 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F G+++ +A L+ ++LY R D+ L EDEF+ DL + D G+ G+V
Sbjct: 66 IVHFKGVEDRSAAEALKGIRLYVTRDQLVDD-LAEDEFYQVDLIGLRVQDCAGQSLGKVS 124
Query: 121 GVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
G +NFGAG +LEI+ K T LIPF+K AV E+ + ++++P+AAGL N KN
Sbjct: 125 GFFNFGAGDLLEIRLNTRKTTVLIPFSKAAVPEICVTSGFLVVEPVAAGLLNNKEKNKVE 184
Query: 180 ---DCPLDSAGKK 189
D D KK
Sbjct: 185 NDLDSNEDERMKK 197
>gi|261419400|ref|YP_003253082.1| 16S rRNA-processing protein RimM [Geobacillus sp. Y412MC61]
gi|297530625|ref|YP_003671900.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|319766215|ref|YP_004131716.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
gi|261375857|gb|ACX78600.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC61]
gi|297253877|gb|ADI27323.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|317111081|gb|ADU93573.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
Length = 172
Score = 190 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+++ + I THG+ GEV + S + P + + Y+ D + + +K +R +
Sbjct: 1 MERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRERDTEPIEVTVKSHRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + +F G D+I+ + L EL E E++ ++ G+
Sbjct: 61 KSFDLLSFEGYDSINDVERFKGAMLKVPESQL--GELAEGEYYFHEIIGCTVVTEGGETI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + ++ LIP+ VL V+ + I+I P+ L
Sbjct: 119 GAVKEILTPGANDVWVVRREDGSEALIPYIDEVVLHVDPERKTIIIRPMEGLLE 172
>gi|159042900|ref|YP_001531694.1| 16S rRNA-processing protein RimM [Dinoroseobacter shibae DFL 12]
gi|209573577|sp|A8LMB6|RIMM_DINSH RecName: Full=Ribosome maturation factor rimM
gi|157910660|gb|ABV92093.1| 16S rRNA processing protein RimM [Dinoroseobacter shibae DFL 12]
Length = 166
Score = 190 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-NDNRELRILKMYRKNKRFIA 62
+ V + + G+ GE+ I S+ P D+ Y S D RE + +
Sbjct: 1 MSDRVCVGAVAGAFGVRGELRIKSFCAVPEDIASYNPLSFEDGRETTLRLTGQIKNGLSG 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ N +A LR +LYA R L +DEF++ DL + D G G+V V
Sbjct: 61 RLTGVSNKEAADALRGARLYAPRDRLPR--LPDDEFYHADLIGLAVHDTGGTLLGKVAAV 118
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+N GAG +LE++ + + L+PFT+ V V+L +I+ DP
Sbjct: 119 HNHGAGDLLELRGPGLKGSVLLPFTRAVVPTVDLDAGRIVADPPEGL 165
>gi|319407794|emb|CBI81445.1| Ribosome maturation factor rimM [Bartonella sp. 1-1C]
Length = 171
Score = 190 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+NG+V + ++NP L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGINGDVVVKVLSSNPESLKSYSVFYDETERSYEVVTFRVQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L+EDEF+ DL + ++ ++ G+V G
Sbjct: 61 HFKGIEERSAAESLRGIKLYVERNQLADD-LDEDEFYQIDLIGLCVYNCAKQFLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
+NFGAG ++EI+ K LI F+K AV E+ + +++DPIAAGL +
Sbjct: 120 FNFGAGDLIEIQLVSGKKVLISFSKAAVPEICVASGFLIVDPIAAGLFHDQE 171
>gi|159185334|ref|NP_355635.2| 16S rRNA-processing protein [Agrobacterium tumefaciens str. C58]
gi|159140589|gb|AAK88420.2| 16S rRNA processing protein [Agrobacterium tumefaciens str. C58]
Length = 179
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIATFSGID 68
MA IG GL GEV + +Y ++P+ L Y L + D R IL++ + F GI+
Sbjct: 1 MAKIGGAQGLRGEVRVSTYTDDPMALGDYGNLVTADGRVFEILEVREGKNVVVVRFRGIN 60
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ ++A L L+L+ +R + D+EL++DEF+ DLE +E D +GK +G V VY+FGAG
Sbjct: 61 DRNAAESLNGLELFIERDNLPDDELDDDEFYYADLEGLEAVDAEGKSYGAVSAVYDFGAG 120
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+LE+K + LIPF++ AVLE++L+ +ILIDP+AAGL + Q
Sbjct: 121 DLLELKGAGRRPALIPFSEAAVLEIDLEAGRILIDPMAAGLIDNPDDKDQNGMSP 175
>gi|229086395|ref|ZP_04218571.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
gi|228696911|gb|EEL49720.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
Length = 174
Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M+ + K + I THG+ GE+ + S + P + + Y+ L + + +
Sbjct: 1 MLFMTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWSDKGTEPLPVKITSH 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R++K F + TF G N+ + + L + EL E E++ ++ G
Sbjct: 61 RQHKTFDLLTFEGYGNVDEVEKFKGSLLKVPEEQL--GELAEGEYYYHEIIGCNVVTEDG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 EALGTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNVENKLVTIHVMEGLL 174
>gi|91974988|ref|YP_567647.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris BisB5]
gi|123749437|sp|Q13DU3|RIMM_RHOPS RecName: Full=Ribosome maturation factor rimM
gi|91681444|gb|ABE37746.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris BisB5]
Length = 176
Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATF 64
L+ +A IG HG+ G + + S+ P+ + Y + R I + T
Sbjct: 5 LICIARIGAPHGVRGAMRLWSFTAEPLAVMDYGPLATKDGARSFEIATARPAKDHLVVTL 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ A L L+LY R E + E+++ DL + G+ G+V ++N
Sbjct: 65 KGVATREEAERLNGLELYVPRDRLPPTE--DGEYYHADLIGLPAITPAGEPLGRVLAIHN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
FGAG I+EI T L+PFT V V+L ++I+ + + T +P+
Sbjct: 123 FGAGDIIEIAPPQGATLLLPFTNAVVPTVDLTAGHVVIE-LPTEIEGDTPNHPE 175
>gi|126732673|ref|ZP_01748469.1| 16S rRNA processing protein RimM [Sagittula stellata E-37]
gi|126706803|gb|EBA05873.1| 16S rRNA processing protein RimM [Sagittula stellata E-37]
Length = 167
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+D+ + + I G+ GE + S+ +P + Y L + D R + F
Sbjct: 1 MDQTICVGAIAGAFGVQGEARLKSFTADPRAIEDYAPLTTEDGRSFGLNITREIANGFAV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ A L+ ++LYA R L +DEF++TDL + FD G G+V V
Sbjct: 61 RLTGVATKEEADALKGVRLYAPRDRLPS--LPDDEFYHTDLIGLSVFDTGGVELGKVKAV 118
Query: 123 YNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
N GA +LE+ T + T L+PFT+ V V+L +I+ DP L+
Sbjct: 119 LNHGATDLLELHATGKSGTVLLPFTRACVPTVDLTAGRIVADPPEGLLD 167
>gi|288553086|ref|YP_003425021.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
gi|288544246|gb|ADC48129.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
Length = 173
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKM--YRK 56
+ L+ + I THG+ GE+ + S + P + +++ +N + + ++
Sbjct: 1 MADLLKVGKIVNTHGVRGEIRVISSTDFPDERYAKGCELWIVDANTKKHISVVVANHRVH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G D+I+ E + LY + D L+E EF+ ++ E + ++
Sbjct: 61 KNFDLLTFEGYDSINQVEEFKGSTLYVSKDQLSD--LDEGEFYYHEIIGCEVYTTNNEHL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GQ+ + GA + I+ K LIP+ + V+E+NL+ENK++IDP+ +
Sbjct: 119 GQIKEIIETGANDVWVIRRAGGGKDILIPYIEDVVIEINLEENKVIIDPMEGLVE 173
>gi|229006118|ref|ZP_04163806.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
gi|228755194|gb|EEM04551.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
Length = 171
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + L + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDKGTEPLSVKVASHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G +N+ +L+ + + EL E E++ ++ + +G+
Sbjct: 61 KTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQL--GELAEGEYYYHEIIGCKVVTEEGEDL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNIENKLVTIHVMEGLL 171
>gi|70726676|ref|YP_253590.1| 16S rRNA-processing protein RimM [Staphylococcus haemolyticus
JCSC1435]
gi|109893054|sp|Q4L5U1|RIMM_STAHJ RecName: Full=Ribosome maturation factor rimM
gi|68447400|dbj|BAE04984.1| probable 16S rRNA processing protein [Staphylococcus haemolyticus
JCSC1435]
Length = 167
Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + + ++ N E L +L +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLTVNHQNHEEQLTVLSYRVHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ + + LY +R D +D EL E+E++ +D+ FD + G+V +
Sbjct: 63 KFEGINNINDVEQYKGDYLYQER-DHEDIELAENEYYYSDIIGSTVFDNDNQPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ V E++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GEKEYLIPYIADVVKEIDIENKTIRITPMEGLLD 167
>gi|114705611|ref|ZP_01438514.1| 16S rRNA-processing protein [Fulvimarina pelagi HTCC2506]
gi|114538457|gb|EAU41578.1| 16S rRNA-processing protein [Fulvimarina pelagi HTCC2506]
Length = 185
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 2/186 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND-NRELRILKMYRKNKRF 60
+KL+ VL+ +G HG+ GEV + SY P D+ Y ++ + +
Sbjct: 1 MKLENPVLLGVVGGAHGVRGEVRVKSYTEEPTDIGAYGPLQDENGNRYTVKTARSQKTVV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F ++ + A L +L+ +R + E E+DEF+ DLE + G G V
Sbjct: 61 VVKFDEVNERNHAERLNGRELFVERALLPEPE-EDDEFYLDDLEGLAVETLSGDPVGIVV 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V+NFGAG ILE+ T +IPF++ AV E++L+ + +DP+AAGL D
Sbjct: 120 AVHNFGAGDILEVAPEEGTTLMIPFSEAAVPELDLETGLLKVDPLAAGLAEGPDDEETGD 179
Query: 181 CPLDSA 186
S+
Sbjct: 180 EADQSS 185
>gi|319899440|ref|YP_004159537.1| 16S rRNA-processing protein rimM [Bartonella clarridgeiae 73]
gi|319403408|emb|CBI76976.1| putative 16S rRNA-processing protein rimM [Bartonella clarridgeiae
73]
Length = 171
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 2/172 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A I HG+ G+V++ + + P L Y VLY R I+ + I
Sbjct: 1 MKKKVYLAIITAAHGIKGDVFVKTLSAEPQRLKSYSVLYDETGRAYEIVTFRVQKNNAIV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ A L+ +KLY +R D+ L EDEF+ DL +D + G+V G
Sbjct: 61 HFKGIEERSVAESLKGIKLYVERSQLADD-LVEDEFYQIDLIGFCVYDCADQLLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
+NFGAG +LE++ K LI F+K AV ++ + +++DPIAAGL++
Sbjct: 120 FNFGAGDLLEVRLASRKKVLISFSKAAVPKICVDSGFMIVDPIAAGLSHDQE 171
>gi|152976208|ref|YP_001375725.1| 16S rRNA-processing protein [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189040125|sp|A7GRH2|RIMM_BACCN RecName: Full=Ribosome maturation factor rimM
gi|152024960|gb|ABS22730.1| 16S rRNA processing protein RimM [Bacillus cytotoxicus NVH 391-98]
Length = 171
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GEV + S + P + + Y+ L + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEKGTEPLPVKVTSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L + EL E E++ ++ + G+
Sbjct: 61 KTFDLLTFEGYSNVNEVEKFKGSLLKVPEEQL--GELAEGEYYYHEVIGCKVVTENGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN+++ ++ I + L
Sbjct: 119 GTITEILSPGANDVWVIKRPKGQDLLIPYIDDIVLQVNVEQKQVTIHVMEGLL 171
>gi|296133546|ref|YP_003640793.1| 16S rRNA processing protein RimM [Thermincola sp. JR]
gi|296032124|gb|ADG82892.1| 16S rRNA processing protein RimM [Thermincola potens JR]
Length = 174
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI 61
KL+ + I THG GEV + ++P + Y + REL I ++ I
Sbjct: 7 KLIAIGKIINTHGHKGEVKVFPLTDDPRRMEELEKVYFILGESTRELTIKQVRYHKNFVI 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F I ++++A L++ ++ + + + L E ++ D+ + F +G+Y G++
Sbjct: 67 LSFEEIKDMNAAELLKNGEICITKDELRS--LPEGSYYIFDIIGLNVFTNEGRYLGEITD 124
Query: 122 VYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + E+++ K +LIP K V ++ ++ +++I P+ L
Sbjct: 125 VIQTGANDVYEVRDSKSGKHYLIPALKQIVKSIDTEKKEMIICPMEGLLE 174
>gi|229031472|ref|ZP_04187472.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
gi|228729761|gb|EEL80741.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
Length = 171
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKSTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ A + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGCNNVDEAEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|229098311|ref|ZP_04229258.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
gi|229104404|ref|ZP_04235073.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|229117328|ref|ZP_04246706.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|228666228|gb|EEL21692.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|228679102|gb|EEL33310.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|228685209|gb|EEL39140.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
Length = 171
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKSTDFLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ A + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|229174508|ref|ZP_04302040.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
gi|228609068|gb|EEK66358.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
Length = 171
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKSTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ A + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|221640540|ref|YP_002526802.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides KD131]
gi|221161321|gb|ACM02301.1| 16S rRNA-processing protein rimM [Rhodobacter sphaeroides KD131]
Length = 176
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + R R+
Sbjct: 8 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 67 GLGARLSDVTTKEEADALRGVGLYVDRARLPS--LGDDEFYHADLIGLEVRDTGGALLGR 124
Query: 119 VCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 125 VHAVHNHGAGDILEVAGAAGREGLLLPFTRAVVPTVDLAAGRIVADPPEGL 175
>gi|146276238|ref|YP_001166397.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides ATCC
17025]
gi|166226472|sp|A4WNX8|RIMM_RHOS5 RecName: Full=Ribosome maturation factor rimM
gi|145554479|gb|ABP69092.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides ATCC
17025]
Length = 169
Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNK 58
M + D+L + I G+ GEV + S+ P D+ Y + R R+
Sbjct: 1 MTRTDRL-CVGAIAGAFGVKGEVRLKSFCAEPSDIASYGPLFTEDGGRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A SG+ A LR ++LYA R L +DEF++ DL +E D G G+
Sbjct: 60 ALGARLSGVATKEEADALRGVQLYADRDRLPS--LGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEVTGAGRREALLLPFTRAVVPTVDLSIGRIVADPPEGL 168
>gi|329733641|gb|EGG69969.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21193]
Length = 167
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVTNI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|330685679|gb|EGG97320.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU121]
Length = 167
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVL--YSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + + + +EL + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLTAKLNQIEKELTVTSYRTHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GIDNI+ L+ LY +R D +D ELEE+EF+ +D+ FD + + G++ +
Sbjct: 63 KFEGIDNINDIEYLKGALLYQER-DHEDIELEENEFYYSDIIGCTVFDDEQQPIGRITSI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ V EV+++ ++I P+ L+
Sbjct: 122 FETGANDVWVVK--GDKEYLIPYIADVVKEVDVENKTVIITPMEGLLD 167
>gi|160880538|ref|YP_001559506.1| 16S rRNA processing protein RimM [Clostridium phytofermentans ISDg]
gi|189040130|sp|A9KLM3|RIMM_CLOPH RecName: Full=Ribosome maturation factor rimM
gi|160429204|gb|ABX42767.1| 16S rRNA processing protein RimM [Clostridium phytofermentans ISDg]
Length = 169
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ + + + + +EL I + +
Sbjct: 1 MEDLLRVGVISSTHGIKGEVKVFPTTDDMNRFKKLKMVTLDTGKEQKELEIENVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L R++ D L E EFF DL ++ + G G++
Sbjct: 61 VILKFKGIDNINDIEKYKGKDLLISRENAVD--LAEGEFFIFDLIGLQAEEEDGNSLGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + IK K LIP+ V +++L E K+++ I +
Sbjct: 119 TEVLQTGANDVFVIKTKQGKEILIPYIDDCVKKIDLNEKKLVVHLIPGLVE 169
>gi|298292732|ref|YP_003694671.1| 16S rRNA processing protein RimM [Starkeya novella DSM 506]
gi|296929243|gb|ADH90052.1| 16S rRNA processing protein RimM [Starkeya novella DSM 506]
Length = 180
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFIA 62
+ +L+A IG HG+ GEV + +A++P L RY +++ R ++ + F+A
Sbjct: 3 NDRILLARIGAPHGVRGEVRLFVFADDPDSLKRYKPLTDEAGKRVFKVKALRPAKDHFVA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D +A L + L+ R + E +ED+F++ DL + +G +G++ V
Sbjct: 63 RIEGVDTREAAEALTNQGLHVSRDLLPEPE-DEDDFYHADLIGLAAVTTEGAPFGKIVAV 121
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
++FGAG I+E+ KT ++PFTK V V+++ ++++DP +
Sbjct: 122 HDFGAGDIIEVAPEGGGKTLMLPFTKAVVPTVDIKGGRVVVDPAEWAREEAPPPDADQG 180
>gi|254510633|ref|ZP_05122700.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
gi|221534344|gb|EEE37332.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
Length = 167
Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFI 61
+ L+ + +I ++G+ GEV + S+ P D+ Y +++ + ++ F
Sbjct: 1 MSDLICVGSIAGSYGVRGEVRLKSFCAVPEDIEGYSPLTDEAGAKRFPVVLTRTIKNGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A L L+L+A+R L +DEF++TDL +E +D G G+V
Sbjct: 61 ARLGGVETKEEADALSGLRLFARRDQLPS--LPDDEFYHTDLIGLEVYDTGGTLLGRVKS 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V N GA +LE+ + T L+PFT AV V+L + +I+ DP L
Sbjct: 119 VQNHGAADLLELHGPGLKSTVLLPFTLDAVPTVDLDKGRIIADPPEGLL 167
>gi|21223948|ref|NP_629727.1| 16S rRNA-processing protein RimM [Streptomyces coelicolor A3(2)]
gi|256784950|ref|ZP_05523381.1| 16S rRNA-processing protein RimM [Streptomyces lividans TK24]
gi|289768842|ref|ZP_06528220.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
gi|61230608|sp|P0A4D3|RIMM_STRCO RecName: Full=Ribosome maturation factor rimM
gi|61230611|sp|P0A4D4|RIMM_STRLI RecName: Full=Ribosome maturation factor rimM
gi|3191986|emb|CAA19385.1| putative 16S rRNA processing protein [Streptomyces coelicolor
A3(2)]
gi|3336921|emb|CAB06806.1| hypothetical protein [Streptomyces lividans]
gi|289699041|gb|EFD66470.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
Length = 188
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASTGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + A LR+ L A + E +EDE+++ L +++ G G++ +
Sbjct: 63 FAGVHDRTGAEALRNTLLIADVDPDERPE-DEDEYYDHQLIDLDVVTEDGTEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + ++ +PF V ++L + +IDP +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVYVPFVSEIVTGIDLDAQRAVIDPPPGLIDDRAEIASARDAGA 181
Query: 184 DSAGKKS 190
+ AG ++
Sbjct: 182 EDAGDEA 188
>gi|225419754|ref|ZP_03762057.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
gi|225041591|gb|EEG51837.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
++ ++ + I + HG+ GEV + ++ L + VL + L I +
Sbjct: 24 MEDMLRVGVITSPHGVRGEVKVFPTTDDAARFKTLKQVVLDTGKETISLEIEHVKFFKNM 83
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + R L +R+ ELEEDE+F DL + G+ G V
Sbjct: 84 VILKFKGYDNINDIEKYRSKDLLIRREQ--AVELEEDEYFIADLIGLAVVTDAGEALGTV 141
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + ++ + L+P +L+VNL E ++ + + ++
Sbjct: 142 KDVMETGANDVYIVEMKDGRELLLPAIGDCILDVNLDEGRMTVHVLDGLMD 192
>gi|77464628|ref|YP_354132.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides 2.4.1]
gi|332559521|ref|ZP_08413843.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides WS8N]
gi|109893044|sp|Q3IZ03|RIMM_RHOS4 RecName: Full=Ribosome maturation factor rimM
gi|77389046|gb|ABA80231.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides 2.4.1]
gi|332277233|gb|EGJ22548.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides WS8N]
Length = 169
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + R R+
Sbjct: 1 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 60 GLGARLSDVTTKEEADALRGVGLYVDRARLPS--LGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V+N GAG ILE+ + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEVAGAAGREGLLLPFTRAVVPTVDLAAGRIVADPPEGL 168
>gi|298694532|gb|ADI97754.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 167
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDIENKKIIITPMEGLLD 167
>gi|30021930|ref|NP_833561.1| 16S rRNA-processing protein [Bacillus cereus ATCC 14579]
gi|29897486|gb|AAP10762.1| 16S rRNA processing protein rimM [Bacillus cereus ATCC 14579]
Length = 188
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 18 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQH 77
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ + + + + EL E E++ ++ +G+
Sbjct: 78 KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 135
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 136 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 188
>gi|254464202|ref|ZP_05077613.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
gi|206685110|gb|EDZ45592.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
Length = 167
Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFI 61
+ L+ + I + G+ GEV + S+ P ++ Y SN++ + + F
Sbjct: 1 MSDLICVGAIAGSFGVRGEVRLKSFCAVPEEIEDYSPLSNEDGSKTYSLTITRPIKNGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A ++ L+L+A+R L +DEF++ DL +E +D G G V
Sbjct: 61 ALLEGVETKEDADAIKGLRLFARRDQLPL--LPDDEFYHADLIGLEVYDTGGTLLGTVKS 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LEI + T L+PFT AV V+L + +I+ DP
Sbjct: 119 VQNHGASDLLEIHGPGLKATVLLPFTLEAVPTVDLTQGRIIADPPDGL 166
>gi|89069752|ref|ZP_01157088.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
gi|89044698|gb|EAR50809.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
Length = 175
Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNREL-RILKMYRKNKRFIA 62
D V++ +I G+ GEV + SY +P + Y L++ D R + +++ IA
Sbjct: 6 DSRVVVGSIAGAFGVRGEVRLKSYCADPAAIADYTPLHTEDGRTIAQVVITGETKGALIA 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI A LR L+A R L +DEF++ DL + +D G G V V
Sbjct: 66 RLDGIATKEQADALRGTALHAARDRLPS--LPDDEFYHADLLGLPVYDGGGTMLGTVKAV 123
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
++ GAG +LE+ + T L+PFT+ V V+L +I+ DP +
Sbjct: 124 HDHGAGDLLEVHGPGLKSTVLLPFTREIVPTVDLAAGRIVADPPEGLFPSEA 175
>gi|15924229|ref|NP_371763.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926822|ref|NP_374355.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus N315]
gi|21282851|ref|NP_645939.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MW2]
gi|49486078|ref|YP_043299.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651808|ref|YP_186114.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87162204|ref|YP_493829.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267730|ref|YP_001246673.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|150393788|ref|YP_001316463.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|151221361|ref|YP_001332183.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979560|ref|YP_001441819.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu3]
gi|221142029|ref|ZP_03566522.1| 16S rRNA-processing protein [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315597|ref|ZP_04838810.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731857|ref|ZP_04866022.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733523|ref|ZP_04867688.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006026|ref|ZP_05144627.2| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425293|ref|ZP_05601718.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427953|ref|ZP_05604351.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430586|ref|ZP_05606968.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433347|ref|ZP_05609705.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257436189|ref|ZP_05612236.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257795705|ref|ZP_05644684.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|258415929|ref|ZP_05682199.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|258421691|ref|ZP_05684615.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|258434847|ref|ZP_05688921.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|258444577|ref|ZP_05692906.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|258447590|ref|ZP_05695734.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|258449432|ref|ZP_05697535.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|258452537|ref|ZP_05700543.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|258454811|ref|ZP_05702775.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|262048137|ref|ZP_06021024.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262051868|ref|ZP_06024084.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|269202855|ref|YP_003282124.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|282892726|ref|ZP_06300961.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|282903793|ref|ZP_06311681.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282905557|ref|ZP_06313412.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908532|ref|ZP_06316362.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910811|ref|ZP_06318614.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914015|ref|ZP_06321802.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282918937|ref|ZP_06326672.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282920022|ref|ZP_06327751.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282924060|ref|ZP_06331736.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282927580|ref|ZP_06335196.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|283957981|ref|ZP_06375432.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293501047|ref|ZP_06666898.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510008|ref|ZP_06668716.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|293526595|ref|ZP_06671280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|294848233|ref|ZP_06788980.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|295406174|ref|ZP_06815981.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295427725|ref|ZP_06820357.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296274796|ref|ZP_06857303.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MR1]
gi|297208117|ref|ZP_06924548.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297244402|ref|ZP_06928285.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297591316|ref|ZP_06949954.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300912197|ref|ZP_07129640.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381197|ref|ZP_07363850.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|54039059|sp|P66656|RIMM_STAAN RecName: Full=Ribosome maturation factor rimM
gi|54039060|sp|P66657|RIMM_STAAW RecName: Full=Ribosome maturation factor rimM
gi|54041929|sp|P66655|RIMM_STAAM RecName: Full=Ribosome maturation factor rimM
gi|56749523|sp|Q6G9X4|RIMM_STAAS RecName: Full=Ribosome maturation factor rimM
gi|67461252|sp|Q5HGJ3|RIMM_STAAC RecName: Full=Ribosome maturation factor rimM
gi|109893052|sp|Q2FHJ9|RIMM_STAA3 RecName: Full=Ribosome maturation factor rimM
gi|166226477|sp|A7X1K9|RIMM_STAA1 RecName: Full=Ribosome maturation factor rimM
gi|172048857|sp|A6QGD9|RIMM_STAAE RecName: Full=Ribosome maturation factor rimM
gi|189040856|sp|A6U158|RIMM_STAA2 RecName: Full=Ribosome maturation factor rimM
gi|189040857|sp|A5ISC4|RIMM_STAA9 RecName: Full=Ribosome maturation factor rimM
gi|13701039|dbj|BAB42334.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus N315]
gi|14247009|dbj|BAB57401.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21204290|dbj|BAB94987.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49244521|emb|CAG42950.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285994|gb|AAW38088.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87128178|gb|ABD22692.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|147740799|gb|ABQ49097.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|149946240|gb|ABR52176.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|150374161|dbj|BAF67421.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721695|dbj|BAF78112.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|253724409|gb|EES93138.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728577|gb|EES97306.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271750|gb|EEV03888.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274794|gb|EEV06281.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278714|gb|EEV09333.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281440|gb|EEV11577.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257284471|gb|EEV14591.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257789677|gb|EEV28017.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|257839265|gb|EEV63739.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|257842377|gb|EEV66802.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|257849208|gb|EEV73190.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|257850070|gb|EEV74023.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|257853781|gb|EEV76740.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|257857420|gb|EEV80318.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|257859755|gb|EEV82597.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|257863194|gb|EEV85958.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|259160269|gb|EEW45297.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|259163703|gb|EEW48258.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262075145|gb|ACY11118.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|269940731|emb|CBI49112.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282314032|gb|EFB44424.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282316747|gb|EFB47121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282322083|gb|EFB52407.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282325416|gb|EFB55725.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327594|gb|EFB57877.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330849|gb|EFB60363.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590583|gb|EFB95660.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|282594738|gb|EFB99722.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282595411|gb|EFC00375.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282764723|gb|EFC04848.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|283790130|gb|EFC28947.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285816921|gb|ADC37408.1| 16S rRNA processing protein RimM [Staphylococcus aureus 04-02981]
gi|290920667|gb|EFD97730.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|291096052|gb|EFE26313.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466952|gb|EFF09470.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|294825033|gb|EFG41455.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|294968762|gb|EFG44784.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295128083|gb|EFG57717.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887360|gb|EFH26262.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297178432|gb|EFH37678.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297576202|gb|EFH94918.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300886443|gb|EFK81645.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751062|gb|ADL65239.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340180|gb|EFM06121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438383|gb|ADQ77454.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829633|emb|CBX34475.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131032|gb|EFT87016.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS03]
gi|315194127|gb|EFU24520.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198478|gb|EFU28807.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140945|gb|EFW32792.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144340|gb|EFW36106.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313908|gb|AEB88321.1| Ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus T0131]
gi|329724775|gb|EGG61280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21189]
gi|329727338|gb|EGG63794.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21172]
Length = 167
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|138894721|ref|YP_001125174.1| 16S rRNA-processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
gi|166226443|sp|A4IM75|RIMM_GEOTN RecName: Full=Ribosome maturation factor rimM
gi|134266234|gb|ABO66429.1| 16S rRNA processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
Length = 175
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 9/177 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M +++ + I THG+ GEV + S + P + + Y+ D + + +K +
Sbjct: 1 MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSH 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K F + +F G D+I+ + L EL E E++ ++ + G
Sbjct: 61 RVHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQL--GELNEGEYYFHEIIDCTVVTEAG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+V + GA + ++ LIP+ V+ V+ + I+I P+ L
Sbjct: 119 ETIGKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLLE 175
>gi|163738187|ref|ZP_02145603.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis BS107]
gi|161388803|gb|EDQ13156.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis BS107]
Length = 167
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 5/167 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + + I ++G+ GEV + S+ P D+ Y S + ++ I + F
Sbjct: 1 MTEQICVGAISGSYGVRGEVRLKSFCAMPEDIEDYSPLSTEDGSQTYTITLVRAIKNGFT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI+ A L+ ++L+A R+ + L +DE+++TDL +E +D G G V
Sbjct: 61 ARIGGIETKEQADALKGVRLFAPRERLPN--LPDDEYYHTDLMGLEVYDTGGTLLGSVKS 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V N GA +LEI E KT L+PFT AV V+L +I+ DP
Sbjct: 119 VQNHGASDLLEIAIPAESKTVLLPFTLAAVPTVDLASGRIIADPPDG 165
>gi|283470452|emb|CAQ49663.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ST398]
Length = 167
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D L+E+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLDENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|319409397|emb|CBI83041.1| Ribosome maturation factor rimM [Bartonella schoenbuchensis R1]
Length = 179
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATFSG 66
+ +A IG HG+ G+V++ P L Y VLY R I + I F G
Sbjct: 12 ICLAIIGAAHGIRGDVWVKVLGGEPERLKAYGVLYDKGGRCYEIATFRVQKNDAIVRFKG 71
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
++ +A L+ + LY KR D+ L EDEF+ DL + +D K G+V G +NFG
Sbjct: 72 VEERSAAEALKGINLYIKRDQLLDD-LAEDEFYQIDLIGLCVYDDADKRLGEVSGFFNFG 130
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
AG +LEI K LIPF+K AV E+ + I+I+P+AAGL
Sbjct: 131 AGDLLEICLDGGKRELIPFSKAAVPEICVASGFIVINPVAAGL 173
>gi|82750843|ref|YP_416584.1| 16S rRNA-processing protein RimM [Staphylococcus aureus RF122]
gi|282916489|ref|ZP_06324251.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283770301|ref|ZP_06343193.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
gi|109893053|sp|Q2YXK2|RIMM_STAAB RecName: Full=Ribosome maturation factor rimM
gi|82656374|emb|CAI80792.1| 16S rRNA processing protein [Staphylococcus aureus RF122]
gi|282319929|gb|EFB50277.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283460448|gb|EFC07538.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
Length = 167
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+E++ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|317129230|ref|YP_004095512.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
gi|315474178|gb|ADU30781.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
Length = 174
Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNR-ELRILKMYRKN 57
+ + + I THG+ GEV + S + P + YV D R + I +
Sbjct: 1 MTDWLNVGKIVNTHGVRGEVRVISRTDFPEERYAIGNTLYVTSDTDVRTPVEITSWRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + TF G+DN++ + + L + D D EL E EF+ ++ + + G+ G
Sbjct: 61 QFDLLTFKGLDNLNEVEKFKGSLLQIHQNDASD-ELSEGEFYYHEIIGSTVYLQSGEVLG 119
Query: 118 QVCGVYNFGAGSILEIK--NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + + GA + ++ +K LIP+ V +V+++ K++I P+ L+
Sbjct: 120 HVKEILSPGANDVWVVQSNTKGKKDMLIPYIDDVVKQVDVKSKKVVIHPMEGLLD 174
>gi|258423920|ref|ZP_05686805.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
gi|257845949|gb|EEV69978.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
Length = 167
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ + + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLKYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|126463468|ref|YP_001044582.1| 16S rRNA-processing protein RimM [Rhodobacter sphaeroides ATCC
17029]
gi|166226471|sp|A3PN94|RIMM_RHOS1 RecName: Full=Ribosome maturation factor rimM
gi|126105132|gb|ABN77810.1| 16S rRNA processing protein RimM [Rhodobacter sphaeroides ATCC
17029]
Length = 169
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y S + R R+
Sbjct: 1 MTKTDR-VCVGAIAGAFGVKGEVRLKSFCTEPTDIASYGPLSTEKGDRSFRVTLTRPVAG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A S + A LR + LY R L +DEF++ DL +E D G G+
Sbjct: 60 GLGARLSDVTTKEEADALRGVGLYVDRARLPS--LGDDEFYHADLIGLEVRDTGGALLGR 117
Query: 119 VCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V+N GAG ILEI + + L+PFT+ V V+L +I+ DP
Sbjct: 118 VHAVHNHGAGDILEIAGAVGREGLLLPFTRAVVPTVDLAAGRIVADPPEGL 168
>gi|15615043|ref|NP_243346.1| 16S rRNA processing protein [Bacillus halodurans C-125]
gi|14423895|sp|Q9KA14|RIMM_BACHD RecName: Full=Ribosome maturation factor rimM
gi|10175100|dbj|BAB06199.1| 16S rRNA processing protein [Bacillus halodurans C-125]
Length = 173
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 10/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + + I THG+ GEV + S + D YV+ N N + + + +RK+
Sbjct: 1 MSKWLNVGKIVNTHGVRGEVRVLSTTDFEDDRFSSGKTLYVMRPNQNERVAVTVASHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G +I+ + +L +D EL E EFF ++ G+
Sbjct: 61 KNFDLLCFEGYPSINDVEAFKGGRLQVPIEDRP--ELGEGEFFYHEIIGCSVVTIAGEEL 118
Query: 117 GQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + + GA + ++ K LIP+ + V +V+L++ +I I+P+ L
Sbjct: 119 GKVKEILSPGANDVWVVQCRRGGKDLLIPYIEQVVKQVDLEKQQITIEPMEGLLE 173
>gi|239636282|ref|ZP_04677284.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
gi|239597637|gb|EEQ80132.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
Length = 167
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVL--YSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + + + +EL + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLTAKLNQIEKELTVTSYRTHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GIDNI+ L+ LY +R D +D ELEE+EF+ +D+ FD + + G++ +
Sbjct: 63 KFEGIDNINDIEYLKGAVLYQER-DHEDIELEENEFYYSDIIGCTVFDDEQQPIGRITSI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ V +V+++ ++I P+ L+
Sbjct: 122 FETGANDVWVVK--GDKEYLIPYIADVVKDVDVENKTVIITPMEGLLD 167
>gi|254476323|ref|ZP_05089709.1| 16S rRNA processing protein RimM [Ruegeria sp. R11]
gi|214030566|gb|EEB71401.1| 16S rRNA processing protein RimM [Ruegeria sp. R11]
Length = 167
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + + I ++G+ GEV + S+ P D+ Y S + + ++ + F
Sbjct: 1 MTEQICVGAIAGSYGVRGEVRLKSFCAIPEDIEAYSPLSNEDGTQSYTLVLVRAIKNGFT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A L+ L+L+A+R L +DE+++TDL +E +D G G V
Sbjct: 61 ARVGGVETKEQADALKGLRLFAQRDRLPS--LPDDEYYHTDLMGLEVYDTGGTLLGTVKT 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LEI T L+PFT AV V+L +I+ DP
Sbjct: 119 VQNHGASDLLEITVPGHSSTILLPFTLAAVPTVDLASGRIIADPPEGL 166
>gi|307943455|ref|ZP_07658799.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
gi|307773085|gb|EFO32302.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
Length = 179
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 5/166 (3%)
Query: 1 MVKLDK-LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKN 57
M + D LVLMA IG HG+ GEV + ++ ++P+ Y ++ + + + + +
Sbjct: 1 MSETDNSLVLMARIGAAHGIRGEVRVKAFGDDPLSFTDYGELITKSGDTTFEVERARIQK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ F GI++ ++A EL ++L+ R ELE+DEF++ DL M D +G G
Sbjct: 61 TVVVTKFKGINDRNAAEELNGVELFVHRDQLP--ELEDDEFYHDDLVGMAVTDLEGTDLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+V V +FGAG +LE++ TF +PF+K V E++++ + D
Sbjct: 119 KVVMVQDFGAGDLLEVRPKRGPTFYMPFSKAFVPEIDIENRVVKAD 164
>gi|323441015|gb|EGA98722.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O11]
gi|323442332|gb|EGA99962.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O46]
Length = 167
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDIENKKISITPMEGLLD 167
>gi|319406318|emb|CBI79955.1| Ribosome maturation factor rimM [Bartonella sp. AR 15-3]
Length = 169
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ K V +A IG HG+ G+V+I + + P L Y V Y R ++ + I
Sbjct: 1 MKKKVYLAIIGAAHGIKGDVFIKALSTKPHSLKGYSVFYDETGRSYEVVTFRVQKNNAII 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+ +A LR +KLY +R D+ L EDEF+ DL + ++ + G+V G
Sbjct: 61 HFKGIEERSAAEALRGIKLYVERSQLADD-LVEDEFYQIDLIGLCVYNCAKQLLGKVSGF 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+NFGAG ++EI+ K LI F+K V ++ + +++DPIAAGL++
Sbjct: 120 FNFGAGDLMEIQLVSGKKVLISFSKAVVPKICVSSGFLIVDPIAAGLSH 168
>gi|296268965|ref|YP_003651597.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
gi|296091752|gb|ADG87704.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
Length = 171
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HG+ GEV ++ + P D L + + +
Sbjct: 3 LVVGRIGRPHGVRGEVTVEVRTDEPEARFAPGSVLATDPADAGPLTVERARWHRGILLVA 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + ++A LR L D + DEF + +L + G+ G+V V
Sbjct: 63 FAGVPDRNAAERLRGTLLVIDSADIP-PSGDPDEFHDHELLGLAVVTTDGQRVGEVADVL 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G +L ++ + +PF K V EV+ +++IDP L
Sbjct: 122 HHG-QDLLVVRRPSGEEVYVPFVKAIVPEVDPGAGRLVIDPPPGLLE 167
>gi|88194946|ref|YP_499746.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|122539706|sp|Q2FZ44|RIMM_STAA8 RecName: Full=Ribosome maturation factor rimM
gi|87202504|gb|ABD30314.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 167
Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCAVFDDQKTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|302332843|gb|ADL23036.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 167
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+E++ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEYYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIIKPMEGLLD 167
>gi|260588676|ref|ZP_05854589.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
gi|260541151|gb|EEX21720.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
Length = 168
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNR--ELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ D + VL EL I ++ +
Sbjct: 1 MEDLLQVGVITTTHGIRGEVKVFPTTDDAHRFDYLKSVLLDTGKELCELDIERVKYFKQY 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +D+I+ + LY R+ L+E+E++ DL ME + GK++G +
Sbjct: 61 VILKFKDVDDINDIEPYKGKSLYVTREF--AVPLKENEYYIADLIGMEVYLEDGKHFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + K LIP K + EV+++ K+++ +
Sbjct: 119 MDVMETGANDVYVVHLEAGKEVLIPAIKDCIKEVDVENGKMVVHLLKGL 167
>gi|49483402|ref|YP_040626.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA252]
gi|56749570|sp|Q6GHJ6|RIMM_STAAR RecName: Full=Ribosome maturation factor rimM
gi|49241531|emb|CAG40217.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 167
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKES--KEYLIPYIADVVKEVDVENKKIIITPMEGLLD 167
>gi|163744763|ref|ZP_02152123.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
gi|161381581|gb|EDQ05990.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
Length = 175
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 6/176 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNK 58
M D L+ + I +G+ GEV + SY P D+ Y LY+ D R + +++
Sbjct: 1 MSDQD-LICVGAIAGAYGVRGEVRVKSYCAAPEDIETYRPLYTEDGSRTFNLALLHQVKN 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F A + I A E+R L L+A R L +DEF++ DL +E +D G G+
Sbjct: 60 GFAARIAEITTKEEADEMRGLSLFAARDQLPS--LPDDEFYHADLIGLEVYDTGGTLLGR 117
Query: 119 VCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V V N GA +LE++ T +PFTK AV V+L +I+ DP L +
Sbjct: 118 VKTVQNHGADDLLELQLKGTSATTFLPFTKAAVPTVDLASGRIVADPPHGVLPDAA 173
>gi|56698087|ref|YP_168458.1| 16S rRNA-processing protein RimM [Ruegeria pomeroyi DSS-3]
gi|67461274|sp|Q5LNF0|RIMM_SILPO RecName: Full=Ribosome maturation factor rimM
gi|56679824|gb|AAV96490.1| 16S rRNA processing protein RimM [Ruegeria pomeroyi DSS-3]
Length = 167
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRFI 61
+ L+ + ++ + G+ GEV + S+ P D+ Y ++++ R I+ F
Sbjct: 1 MSDLICVGSVAGSFGVRGEVRLKSFCAVPEDIEMYSPLTDESGTARYPIVLTRAIKNGFA 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A L+ L+LY +R L +DEF++TDL +E FD G G+V
Sbjct: 61 AHLGGVETKEEADALKGLRLYTQRDRLPS--LPDDEFYHTDLIGLEVFDTGGTLLGKVIS 118
Query: 122 VYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LEI K+ L+PFT+ AV V+L++ +I+ DP
Sbjct: 119 VQNHGAADLLEIGGAGLKSPVLLPFTQAAVPTVDLEQRRIVADPPEGL 166
>gi|239623997|ref|ZP_04667028.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47_FAA]
gi|239522028|gb|EEQ61894.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47FAA]
Length = 170
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
++ ++ + I +THG+ GEV + ++P L +L + L I ++
Sbjct: 1 MEDMLRVGVIASTHGVRGEVKVFPTTDDPSRFKQLKEVILDTGKEHLPLEIQQVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + + L R ELE DE+F TDL +E G+ G +
Sbjct: 61 VILKFKGYDNINDIEKYKSKDLLIPRDQ--AVELEPDEYFITDLIGLEVRTEDGEILGTM 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + ++ K L+P +L V+L++ + + + ++
Sbjct: 119 KDVLETGANDVYVVQMKDGKELLLPAIGDCILNVDLEQGVMTVHILDGLMD 169
>gi|302537191|ref|ZP_07289533.1| 16S rRNA processing protein RimM [Streptomyces sp. C]
gi|302446086|gb|EFL17902.1| 16S rRNA processing protein RimM [Streptomyces sp. C]
Length = 208
Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L+ + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLSPGAVLRTEPASAGPLTIETGRVHSSRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A + E EEDE+++ L +++ G G++ +
Sbjct: 63 FEGVKDRTAAEALRNTLLIADVDPAELPE-EEDEYYDHQLMDLDVVLEDGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ +IPF + V E++L+E + +I P +++ D
Sbjct: 122 HLPSQDLFIVERPDGTEVMIPFVEEIVAEIDLEEQRCVITPPPGLIDDRAEIASARDAET 181
Query: 184 DSAGKKS 190
+ +K+
Sbjct: 182 SAEAEKA 188
>gi|206972753|ref|ZP_03233683.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218235147|ref|YP_002368643.1| 16S rRNA-processing protein RimM [Bacillus cereus B4264]
gi|228922596|ref|ZP_04085896.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954118|ref|ZP_04116147.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960058|ref|ZP_04121722.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047529|ref|ZP_04193119.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|229071340|ref|ZP_04204563.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|229081097|ref|ZP_04213607.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|229111313|ref|ZP_04240866.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|229129118|ref|ZP_04258091.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|229146413|ref|ZP_04274784.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|229152041|ref|ZP_04280236.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|229180118|ref|ZP_04307462.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|229192011|ref|ZP_04318981.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|296504337|ref|YP_003666037.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
gi|33301480|sp|Q819W5|RIMM_BACCR RecName: Full=Ribosome maturation factor rimM
gi|226694909|sp|B7HDW5|RIMM_BACC4 RecName: Full=Ribosome maturation factor rimM
gi|206732318|gb|EDZ49510.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218163104|gb|ACK63096.1| 16S rRNA processing protein RimM [Bacillus cereus B4264]
gi|228591562|gb|EEK49411.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|228603327|gb|EEK60804.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|228631390|gb|EEK88024.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|228637046|gb|EEK93505.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|228654355|gb|EEL10220.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|228672089|gb|EEL27380.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|228702141|gb|EEL54617.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|228711794|gb|EEL63746.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|228723776|gb|EEL75131.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|228799574|gb|EEM46527.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805684|gb|EEM52274.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228837025|gb|EEM82366.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325389|gb|ADH08317.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
Length = 171
Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKGTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|254487378|ref|ZP_05100583.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
gi|214044247|gb|EEB84885.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
Length = 194
Score = 185 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + I ++G+ GE+ I SY P D+ Y + + +R + + F+
Sbjct: 14 MSDKIPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALALVRPIKNGFV 73
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A + + + A LR LYA R L +DEF++ DL +E +D G G+V
Sbjct: 74 ARITDVTSKEEADALRGTLLYADRAQLPS--LPDDEFYHADLLGLEVYDTGGTLIGKVKT 131
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V N GA +LE + T +PFTK AV V+L +I+ DP L +T
Sbjct: 132 VQNHGADDLLETQLAGTSATVFLPFTKAAVPTVDLASGRIIADPPDGILPDTKADADA 189
>gi|118479064|ref|YP_896215.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
gi|118418289|gb|ABK86708.1| 16S rRNA processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
Length = 193
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + + +R++
Sbjct: 23 MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH 82
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L EL E E++ ++ +G+
Sbjct: 83 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEAL 140
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 141 GTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 193
>gi|228909667|ref|ZP_04073490.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
gi|228849956|gb|EEM94787.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
Length = 171
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKDTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQL--GELSEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|325571318|ref|ZP_08146818.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
gi|325155794|gb|EGC67990.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
Length = 174
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-ILKMYRKNK 58
+ + + + I THG+ GEV + S + P + R L+ + + I+ +RK+K
Sbjct: 1 MTEYLNVGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPITLIVSGHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F + TF G NI+ R+ L + D D L E+EF+ ++ +E + G G
Sbjct: 61 NFDLVTFEGYPNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTIIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ +K LIP+ + V ++L+ ++ ++ L++
Sbjct: 119 KVKEILSPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVEIPEGLLDDE 173
>gi|257877633|ref|ZP_05657286.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
gi|257811799|gb|EEV40619.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
Length = 174
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNREL-RILKMYRKNK 58
+ + + + I THG+ GEV + S + P + R L+ + L I+ +RK+K
Sbjct: 1 MTEYLNVGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPLPLIVSGHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F + TF G NI+ R+ L + D D L E+EF+ ++ +E + G G
Sbjct: 61 NFDLLTFEGYSNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTVIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ +K LIP+ + V ++L+ ++ ++ L++
Sbjct: 119 KVKEILSPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVEIPEGLLDDE 173
>gi|329936720|ref|ZP_08286427.1| 16S rRNA-processing protein RimM [Streptomyces griseoaurantiacus
M045]
gi|329303950|gb|EGG47833.1| 16S rRNA-processing protein RimM [Streptomyces griseoaurantiacus
M045]
Length = 211
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPPSAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A + E EDE+++ L +++ G G++ V
Sbjct: 63 FEGVRDRTAAEALRNTVLIADVDPEEMPE-GEDEYYDHQLMDLDVVTVDGTEVGRITEVS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ +IPF + V E++L E K +IDP +++ +
Sbjct: 122 HLPSQDLFVVERPDGTEVMIPFVEEIVTEIDLAEQKAVIDPPPGLIDDRAEIASAREDAA 181
Query: 184 DSAGKKS 190
+ +
Sbjct: 182 EDRPAPA 188
>gi|299821782|ref|ZP_07053670.1| 16S rRNA processing protein RimM [Listeria grayi DSM 20601]
gi|299817447|gb|EFI84683.1| 16S rRNA processing protein RimM [Listeria grayi DSM 20601]
Length = 171
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRELRILKMYRKN 57
++K+ + I THGL GEV + S + P ++ YV + + + +K +R++
Sbjct: 1 MEKMYKVGKIVNTHGLMGEVRVISTTDFAAERYVPGNILYYVPKTGGSAQPLTIKSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G I+ L++ L + LEE+ ++ ++ +G+
Sbjct: 61 KTFDLLTFEGYTGINQVEHLKEGVLKVTESQL--QPLEENAYYFHEIIGCTVVTTEGETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ + GA + ++ +K LIP+ V +++ I I+ + L
Sbjct: 119 GEIKEILTPGANDVWVVETAAKKEILIPYIADVVKTIDIPTKTITIEVMEGLL 171
>gi|218898995|ref|YP_002447406.1| 16S rRNA processing protein RimM [Bacillus cereus G9842]
gi|228902345|ref|ZP_04066502.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|228940930|ref|ZP_04103489.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228966787|ref|ZP_04127831.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973859|ref|ZP_04134435.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980449|ref|ZP_04140759.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|226694908|sp|B7IUK1|RIMM_BACC2 RecName: Full=Ribosome maturation factor rimM
gi|218544507|gb|ACK96901.1| 16S rRNA processing protein RimM [Bacillus cereus G9842]
gi|228779269|gb|EEM27526.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|228785884|gb|EEM33887.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792886|gb|EEM40444.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228818766|gb|EEM64832.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228857314|gb|EEN01817.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|326941611|gb|AEA17507.1| 16S rRNA-processing protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 171
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKDTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G +N+ + + + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|52785581|ref|YP_091410.1| 16S rRNA-processing protein RimM [Bacillus licheniformis ATCC
14580]
gi|163119432|ref|YP_078995.2| 16S rRNA-processing protein RimM [Bacillus licheniformis ATCC
14580]
gi|319646017|ref|ZP_08000247.1| 16S rRNA-processing protein rimM [Bacillus sp. BT1B_CT2]
gi|81385584|sp|Q65JP7|RIMM_BACLD RecName: Full=Ribosome maturation factor rimM
gi|52348083|gb|AAU40717.1| RimM [Bacillus licheniformis ATCC 14580]
gi|145902939|gb|AAU23357.2| 16S rRNA processing protein [Bacillus licheniformis ATCC 14580]
gi|317391767|gb|EFV72564.1| 16S rRNA-processing protein rimM [Bacillus sp. BT1B_CT2]
Length = 174
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
L + + I THG+ GEV + S + P + + Y+ + +++ + +R +
Sbjct: 2 LKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRLH 61
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K+F + F ++ + A +L++ + +L EDE++ ++ + F G
Sbjct: 62 KQFHLLQFKEVETLTEAEKLKNALIKVPEDQL--SQLAEDEYYFHEIIGCDVFSEDGDLI 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+V + GA + + +K LIP+ V E+N+ + I I + L+
Sbjct: 120 GKVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVADKTIKIHIMEGLLDE 174
>gi|331081975|ref|ZP_08331103.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405570|gb|EGG85100.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
Length = 168
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNR--ELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ D + VL EL I ++ +
Sbjct: 1 MEDLLQVGVITTTHGIRGEVKVFPTTDDAHRFDYLKSVLLDTGKELCELDIERVKYFKQY 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +D+I+ + LY R+ L+E+E++ DL ME + GK++G +
Sbjct: 61 VILKFKDVDDINDIEPYKGKSLYVTREF--AVPLKENEYYTADLIGMEVYLEDGKHFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + K LIP K + EV+++ K+++ +
Sbjct: 119 MDVMETGANDVYVVHLEAGKEVLIPAIKDCIKEVDVENGKMVVHLLKGL 167
>gi|294675923|ref|YP_003576538.1| 16S rRNA processing protein RimM [Rhodobacter capsulatus SB 1003]
gi|294474743|gb|ADE84131.1| 16S rRNA processing protein RimM [Rhodobacter capsulatus SB 1003]
Length = 169
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNK 58
M K D+ V + I G+ GEV + S+ P D+ Y + R +
Sbjct: 1 MSKTDR-VCVGAIAGGFGVKGEVRLKSFCATPEDIAAYGPLYSEDGTRSFTVRLTRPVTG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
A SGI A L+ L+A R L +DEF++ DL + D G G
Sbjct: 60 GLGARLSGIATKEEADALKGATLWADRDRLP--HLPDDEFYHADLIGLPVQDTGGALIGT 117
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V +FGAG ILE+ K T ++PFT+ V V+L +I+ DP
Sbjct: 118 VRAVLDFGAGDILEVHVPGRKTTLMLPFTRAVVPTVDLTAGRIIADPPEEL 168
>gi|153810633|ref|ZP_01963301.1| hypothetical protein RUMOBE_01017 [Ruminococcus obeum ATCC 29174]
gi|149833029|gb|EDM88111.1| hypothetical protein RUMOBE_01017 [Ruminococcus obeum ATCC 29174]
Length = 168
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDN--RELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + + P YVL R L I +
Sbjct: 1 MEDLLKVGVITTTHGVRGEVKVYPTTDEPERFLDLEYVLLDTGKELRRLDIKNVRFFKNL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L+ R++ +EL+EDE++ DL M+ G +G +
Sbjct: 61 VILKFDGIDNINDIEKYKGRDLWIPREE--AQELDEDEYYIADLLGMKVLLEDGSEFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + + + L+P K +L+V+++ N + + + L
Sbjct: 119 KNVMETGANDVYIVDSVEHGEVLLPAIKECILDVDIETNTMTVHLMKGLL 168
>gi|149915428|ref|ZP_01903955.1| putative 16S rRNA processing protein [Roseobacter sp. AzwK-3b]
gi|149810717|gb|EDM70558.1| putative 16S rRNA processing protein [Roseobacter sp. AzwK-3b]
Length = 170
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRI-LKMYRKN 57
M D + + I G++GE+ + S+ P D+ Y + R I L
Sbjct: 1 MTD-DTRICLGAIAGAFGVHGELRLKSFTATPEDIAAYGPLETEDGARSFEITLSGQSAK 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
IA SG+ A LR ++LY +R L ++E+++ DL +E +D G G
Sbjct: 60 GGLIARLSGVTTKEQADALRGVRLYTERDRLPA--LPDEEYYHADLIGLEVYDTGGTLLG 117
Query: 118 QVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V V N GAG ILE+ T L+PFT+ AV V+L +I+ DP
Sbjct: 118 RVKAVLNHGAGDILELHGQGLTSTVLLPFTRQAVPTVDLAAGRIVADPPEGL 169
>gi|257867551|ref|ZP_05647204.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257873880|ref|ZP_05653533.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
gi|257801607|gb|EEV30537.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257808044|gb|EEV36866.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
Length = 174
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNREL-RILKMYRKNK 58
+ + + + I THG+ GEV + S + P + R L+ + L I+ +RK+K
Sbjct: 1 MTEYLNVGKIVNTHGIRGEVRVISQTDFPEERYRKGAELTLFRENKEPLPLIVSGHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F + TF G NI+ R+ L + D D L E+EF+ ++ +E + G G
Sbjct: 61 NFDLLTFEGYPNINDVEPFRNGILKVTKDDLVD--LAENEFYYHEIIGLEVVEEDGTVIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ +K LIP+ + V ++L+ ++ ++ L++
Sbjct: 119 KVKEILSPGANDVWVVQRKGKKDALIPYIESVVHTIDLENGQVTVEIPEGLLDDE 173
>gi|83592522|ref|YP_426274.1| 16S rRNA processing protein RimM [Rhodospirillum rubrum ATCC 11170]
gi|109893043|sp|Q2RV58|RIMM_RHORT RecName: Full=Ribosome maturation factor rimM
gi|83575436|gb|ABC21987.1| 16S rRNA processing protein RimM [Rhodospirillum rubrum ATCC 11170]
Length = 201
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 3/187 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFI 61
+ + +L+ I +HG+ G V + S+ + + L Y S++ R + + I
Sbjct: 1 MTERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRNQAKGVVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + +A L+ +L+ R + LEEDE+++ DL + G G V
Sbjct: 61 CQIPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHS 120
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V++FGAG +LE+ ++ L+PFTK V V+++ +++ DP L++T
Sbjct: 121 VHDFGAGDMLEVTLAQGRRSVLLPFTKAVVPLVDVKAGRLVADPPLGLLDDTRPPAGVEG 180
Query: 181 CPLDSAG 187
+ G
Sbjct: 181 EVEEDPG 187
>gi|284024232|ref|ZP_06378630.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus 132]
Length = 167
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + + V+++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF GI+NI+ L+ +Y +R D +D LEE+EF+ +D+ FD Q G+V +
Sbjct: 63 TFEGINNINDIEHLKGSSIYQER-DHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK + K +LIP+ V EV+++ KI+I P+ L+
Sbjct: 122 FETGANDVWVIKGS--KEYLIPYIADVVKEVDVENKKIIIMPMEGLLD 167
>gi|153813991|ref|ZP_01966659.1| hypothetical protein RUMTOR_00198 [Ruminococcus torques ATCC 27756]
gi|317501514|ref|ZP_07959712.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088011|ref|ZP_08336933.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848387|gb|EDK25305.1| hypothetical protein RUMTOR_00198 [Ruminococcus torques ATCC 27756]
gi|316897143|gb|EFV19216.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409159|gb|EGG88614.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
Length = 168
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNREL--RILKMYRKNKR 59
+++ + + I +THG+ GEV + ++P + V+ R++ I + +
Sbjct: 1 MEQFLQVGAITSTHGIRGEVKVFPTTDDPARFKKLKKVILDTGKRQIDMEIQSVRFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L+ R++ LEE+E++ DL ME F +G ++G V
Sbjct: 61 VIVKFKGIDNINDVEQYKGSSLFVSREN--AVSLEENEYYIADLIGMEVFTEEG-HFGIV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + I + + L+P K + V+++ K+ I + +
Sbjct: 118 KDVMETGANEVYIIDSDVHGEVLVPAIKQCIENVDVENGKMQIRLLEGLI 167
>gi|242373531|ref|ZP_04819105.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
gi|242348894|gb|EES40496.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
Length = 167
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVL--YSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + ++ ++N++ + I +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTATRFQPGENLIVKHNNNDIQYTIASYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ LY +R D +D EL+E E++ +D+ FD G+V +
Sbjct: 63 KFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEYYYSDIIGCTVFDDNNTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GDKEYLIPYIEDVVKDIDVEGKSIRITPMEGLLD 167
>gi|255281045|ref|ZP_05345600.1| 16S rRNA processing protein RimM [Bryantella formatexigens DSM
14469]
gi|255268493|gb|EET61698.1| 16S rRNA processing protein RimM [Bryantella formatexigens DSM
14469]
Length = 168
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+++ + + + +THG+ GEV + ++ + + + N L I ++
Sbjct: 1 MEQYLQVGVVSSTHGIRGEVKVYPTTDDAARFKKLKEVFAETKHGNVPLAIEQVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + R L R++ +L E+F DL + G+ G +
Sbjct: 61 VILKFKGIDNINDVEKYRGCPLLVTREN--AVKLAPGEYFLCDLIGLSVSTDTGEELGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K EK LIP TK ++EV+L++N + + + L
Sbjct: 119 TEVIRTGANDVYVVKTKNEKEVLIPNTKECIIEVSLEKNTMTVHLLEGLL 168
>gi|295109863|emb|CBL23816.1| 16S rRNA processing protein RimM [Ruminococcus obeum A2-162]
Length = 168
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ YVL R L I +
Sbjct: 1 MEDLLKVGVITTTHGVRGEVKVFPTTDDAERFLELEYVLLDTGRELRRLDIKNVRFFKNL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L+ R++ +EL EDE++ DL+ + G +G +
Sbjct: 61 VILKFDGIDNINDIEKYKGKDLWIPREE--AQELGEDEYYIADLQGLNVVLEDGTEFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + I + L+P K +L+V+L++N + + + L
Sbjct: 119 RDVMETGANDVYIIDSNEHGEVLLPAIKECILDVDLEKNTMTVHLMKGLL 168
>gi|196247660|ref|ZP_03146362.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
gi|196212444|gb|EDY07201.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
Length = 173
Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+++ + I THG+ GEV + S + P + + Y+ D + + +K +R +
Sbjct: 2 MERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVH 61
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + +F G D+I+ + L EL E E++ ++ + G+
Sbjct: 62 KSFDLLSFEGYDSINDVEPFKGAMLKVPESQL--GELNEGEYYFHEIIDCTVVTEAGETI 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA + ++ LIP+ V+ V+ + I+I P+ L
Sbjct: 120 GKVKEILTPGANDVWVVRRQDGTDALIPYIDDVVMHVDPERKIIIIRPMEGLLE 173
>gi|83855064|ref|ZP_00948594.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83941588|ref|ZP_00954050.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
gi|83842907|gb|EAP82074.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83847408|gb|EAP85283.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
Length = 173
Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ + + I +G+ GE+ I SY P D+ Y S + R + + F+
Sbjct: 1 MSDKISVGAISGAYGVRGELRIKSYCAVPEDIESYSPLSSEDGTRSFNLALVRPVKNGFV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A + + + A LR L+A+R L +DEF++TDL +E +D G G+V
Sbjct: 61 ARITDVTSKEEADALRGTVLFAQRDQLPS--LPDDEFYHTDLIGLEVYDTGGTLIGKVKT 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V N GA +LE + +T +PFTK AV V+L +I+ DP L +
Sbjct: 119 VQNHGADDLLETQLAGSAQTVFLPFTKAAVPTVDLATGRIIADPPEGILPDAK 171
>gi|42782934|ref|NP_980181.1| 16S rRNA-processing protein RimM [Bacillus cereus ATCC 10987]
gi|49186692|ref|YP_029944.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Sterne]
gi|49481628|ref|YP_037903.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217961262|ref|YP_002339830.1| 16S rRNA-processing protein RimM [Bacillus cereus AH187]
gi|222097287|ref|YP_002531344.1| 16S rRNA-processing protein rimm [Bacillus cereus Q1]
gi|225865823|ref|YP_002751201.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228916479|ref|ZP_04080045.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928890|ref|ZP_04091922.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935156|ref|ZP_04097983.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947561|ref|ZP_04109851.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228986985|ref|ZP_04147111.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229092884|ref|ZP_04224018.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|229123356|ref|ZP_04252560.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|229140485|ref|ZP_04269040.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|229157418|ref|ZP_04285496.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|229186082|ref|ZP_04313251.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|229197952|ref|ZP_04324667.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|254720890|ref|ZP_05182681.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. A1055]
gi|301055332|ref|YP_003793543.1| 16S rRNA-processing protein [Bacillus anthracis CI]
gi|59798280|sp|Q6HEX3|RIMM_BACHK RecName: Full=Ribosome maturation factor rimM
gi|59798339|sp|Q732M8|RIMM_BACC1 RecName: Full=Ribosome maturation factor rimM
gi|209573750|sp|A0RHL5|RIMM_BACAH RecName: Full=Ribosome maturation factor rimM
gi|226694910|sp|B7HLH5|RIMM_BACC7 RecName: Full=Ribosome maturation factor rimM
gi|254797743|sp|C1EP66|RIMM_BACC3 RecName: Full=Ribosome maturation factor rimM
gi|254797744|sp|B9IVD1|RIMM_BACCQ RecName: Full=Ribosome maturation factor rimM
gi|42738861|gb|AAS42789.1| 16S rRNA processing protein RimM [Bacillus cereus ATCC 10987]
gi|49180619|gb|AAT55995.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Sterne]
gi|49333184|gb|AAT63830.1| 16S rRNA processing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217067406|gb|ACJ81656.1| 16S rRNA processing protein RimM [Bacillus cereus AH187]
gi|221241345|gb|ACM14055.1| 16S rRNA processing protein [Bacillus cereus Q1]
gi|225790577|gb|ACO30794.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228585531|gb|EEK43634.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|228597258|gb|EEK54909.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|228626145|gb|EEK82894.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|228643046|gb|EEK99322.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|228660132|gb|EEL15768.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|228690506|gb|EEL44289.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|228772763|gb|EEM21203.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228812081|gb|EEM58412.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824521|gb|EEM70326.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830697|gb|EEM76302.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843058|gb|EEM88140.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377501|gb|ADK06405.1| 16S rRNA-processing protein [Bacillus cereus biovar anthracis str.
CI]
gi|324327739|gb|ADY22999.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 171
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|229162778|ref|ZP_04290735.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
gi|228620660|gb|EEK77529.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
Length = 171
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY ++ + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEKDTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ T G +N+ +L+ + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|259417349|ref|ZP_05741268.1| 16S rRNA processing protein RimM [Silicibacter sp. TrichCH4B]
gi|259346255|gb|EEW58069.1| 16S rRNA processing protein RimM [Silicibacter sp. TrichCH4B]
Length = 171
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
+ L+ + + + G+ GEV + S+ NP ++ Y ++ + + F A
Sbjct: 6 EDLICVGALAGSFGVRGEVRLKSFCANPEEIEDYSPLFGEDGQTRYTLAITRAVKNGFAA 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+D A L+ ++LYA R D L +DEF++ DL +E FD G G+V V
Sbjct: 66 RIVDVDTKEQADALKGVQLYALRDDLPS--LPDDEFYHADLIGLEVFDTGGTLLGRVKAV 123
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
N+GA +LE+ T L+PFTK AV V+L + +I+ DP
Sbjct: 124 QNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLTQGRIIADPPEG 169
>gi|238923880|ref|YP_002937396.1| 16S rRNA-processing protein [Eubacterium rectale ATCC 33656]
gi|238875555|gb|ACR75262.1| 16S rRNA-processing protein [Eubacterium rectale ATCC 33656]
Length = 178
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN--RELRILKMYRKNK 58
+++ L+ + I +THG+ GEV + ++ + V+ N R+L I +
Sbjct: 10 RMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKN 69
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G
Sbjct: 70 QVILKFKGIDDINDVEKYKKAPLFVTREN--AVPLEENEYFIADLIGLSVTSDEGEELGV 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ V GA + +K LIP K +L+V+++ + + +A
Sbjct: 128 IDDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDVENGTMKVHLLAGL 177
>gi|163941580|ref|YP_001646464.1| 16S rRNA-processing protein [Bacillus weihenstephanensis KBAB4]
gi|229013025|ref|ZP_04170190.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
gi|229061445|ref|ZP_04198790.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|229134650|ref|ZP_04263459.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|229168581|ref|ZP_04296304.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|229485581|sp|A9VT80|RIMM_BACWK RecName: Full=Ribosome maturation factor rimM
gi|163863777|gb|ABY44836.1| 16S rRNA processing protein RimM [Bacillus weihenstephanensis
KBAB4]
gi|228614987|gb|EEK72089.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|228648696|gb|EEL04722.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|228717868|gb|EEL69516.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|228748279|gb|EEL98139.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
Length = 171
Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKM--YRKN 57
+ K + I THG+ GE+ + S + P + + ++ + +K+ +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEKGTDYLTVKVTSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + T G +N+ +L+ + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQL--GELAEGEYYYHEIIGCNVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|52141646|ref|YP_085183.1| 16S rRNA-processing protein [Bacillus cereus E33L]
gi|59798170|sp|Q636I4|RIMM_BACCZ RecName: Full=Ribosome maturation factor rimM
gi|51975115|gb|AAU16665.1| 16S rRNA processing protein [Bacillus cereus E33L]
Length = 171
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVVSLTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|229019037|ref|ZP_04175878.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
gi|229025283|ref|ZP_04181703.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|228736036|gb|EEL86611.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|228742277|gb|EEL92436.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
Length = 171
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR-----ELRILKMYRK 56
+ K + I THG+ GE+ + S + P + + LY + + +++ +
Sbjct: 1 MTKWFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYICNEKGTDYLPVKVTSHRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ T G +N+ +L+ + + EL E E++ ++ +G+
Sbjct: 61 KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQL--GELAEGEYYYHEIIGCSVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 119 GTIKEILSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 171
>gi|291563272|emb|CBL42088.1| 16S rRNA processing protein RimM [butyrate-producing bacterium
SS3/4]
Length = 171
Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-----LYSNDNRELRILKMYRKNK 58
++K + + I + HG+ GEV + ++ + + L + REL+I ++
Sbjct: 1 MEKYLRVGVITSPHGVRGEVKVYPTTDDVMRFKKLDKVILDLGRGETRELKIRQVKFFKN 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+D ++ R L R LEEDEFF TDL + +G+ G
Sbjct: 61 MVILKFDGVDTMNEVEGWRQKDLLITRDQ--AIPLEEDEFFITDLIGLNVVTDEGETLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V GA + +K K L+P + +L+V+L + ++L+ + L+
Sbjct: 119 LTDVMETGANDVYCVKTPEGKELLLPAIRDCILDVDLDKEEMLVHVLPGLLD 170
>gi|296446375|ref|ZP_06888320.1| 16S rRNA processing protein RimM [Methylosinus trichosporium OB3b]
gi|296256148|gb|EFH03230.1| 16S rRNA processing protein RimM [Methylosinus trichosporium OB3b]
Length = 186
Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNK- 58
++ VL+ +G HG+ GE+ + S+ +P ++ Y + R I + K
Sbjct: 12 ARMKNAVLLGRLGAAHGVRGEIRLQSFTADPAAISTYGPLFDASGQRRFVIASLRSLGKD 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+A G+ +A LR ++LY R+ +EDEF+ DLE + R G+ G
Sbjct: 72 MFVARLQGVSERSAAEALRGVELYVPREALPAP--DEDEFYLADLEGLRAETRAGETLGV 129
Query: 119 VCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
V V NFGAG ILEI +T L+PFTK V V++ ++L++P
Sbjct: 130 VIAVRNFGAGDILEIAPPQGGETLLLPFTKAVVPIVDVSGGRVLVEPPE 178
>gi|313904184|ref|ZP_07837563.1| 16S rRNA processing protein RimM [Eubacterium cellulosolvens 6]
gi|313470986|gb|EFR66309.1| 16S rRNA processing protein RimM [Eubacterium cellulosolvens 6]
Length = 170
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE-LRILKMYRKNKR 59
+++ + + I TTHG+ GEV + ++ +DL+ +L N E I + +
Sbjct: 1 MEQYLKIGVITTTHGVRGEVKVFPTTDDAGRFLDLDEVMLCKNGKTENHEIENVKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I SGI +++ A R+ +++ R++ +LE+DE++ DL + ++ G +G +
Sbjct: 61 VILKLSGITSMNDAELYRNWEIFIPREE--GVDLEDDEYYQADLIGLTVYNEDGSEFGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K LIP K +++VN++E + + + L+
Sbjct: 119 KEIIETGANDVYVVKTQTHGEVLIPAIKDCIIDVNIEEGHMTVHLMPGILD 169
>gi|297559208|ref|YP_003678182.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843656|gb|ADH65676.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 170
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HG+ G+V +D ++P + L ++ R + R +
Sbjct: 3 LVVGRIGRAHGVRGDVAVDVRTDDPAARFADGSVLATDPAEAGPLTVVSTRRHSGRLLVR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR L +D E + DEF + +L + + G V V
Sbjct: 63 FEGVADRDAAEGLRGTALLVDSEDIPPLE-DPDEFHDHELIGLAAVTTGAEPVGTVADVL 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A +L + +PF V EV++ +I+IDP L+
Sbjct: 122 HH-AQDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDPPPGLLD 167
>gi|291527946|emb|CBK93532.1| 16S rRNA processing protein RimM [Eubacterium rectale M104/1]
Length = 168
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN--RELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ + V+ N R+L I + +
Sbjct: 1 MEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G +
Sbjct: 61 VILKFKGIDDINDVEKYKKAPLFVTREN--AVPLEENEYFIADLIGLSVTSDEGEELGVI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + +K LIP K +L+V+++ + + +A
Sbjct: 119 ADVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDVENGTMKVHLLAGL 167
>gi|308048459|ref|YP_003912025.1| 16S rRNA processing protein RimM [Ferrimonas balearica DSM 9799]
gi|307630649|gb|ADN74951.1| 16S rRNA processing protein RimM [Ferrimonas balearica DSM 9799]
Length = 175
Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFI 61
+L+++ +G+ +G+ G + ++++ ++ + Y VL+ + +E+++ R N I
Sbjct: 5 ELIVVGRLGSAYGIRGWLKVNAFTDSLEGIFEYSPWLVLHQGEWQEMKVADWRRHNNGII 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+G+++ + A + + + + L EDEF+ DL + QG G+V G
Sbjct: 65 CRLAGVEDRNQAEQYINCDVAILPAQLEA--LPEDEFYWRDLVGCTVVNTQGYDMGKVTG 122
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
+ G+ +LE++ ++ LIPF + +LEV+ KI++D
Sbjct: 123 LLETGSNDVLEVEAKSNDAFGKRERLIPFVTEQFILEVDTLGKKIVVD 170
>gi|302554428|ref|ZP_07306770.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
gi|302472046|gb|EFL35139.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
Length = 180
Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 5/178 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLTTDPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR+ L A+ + E EDE+++ L +++ G G++ +
Sbjct: 63 FEGVSDRTGAEALRNTLLIAEIDPDELPE-GEDEYYDHQLIDLDVVTADGTEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ + ++ LIPF + V E++L+E K +I P +++ +
Sbjct: 122 HLPTQDLFIVERPDGSEVLIPFVEEIVAEIDLEEQKAVITPPPGLIDDRAEIASSREE 179
>gi|189425509|ref|YP_001952686.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
gi|209573557|sp|B3E5S5|RIMM_GEOLS RecName: Full=Ribosome maturation factor rimM
gi|189421768|gb|ACD96166.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
Length = 176
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKR 59
D L+ + I THG+ G++ + SY+ N L + R++++ K + +
Sbjct: 6 DNLIAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTRQIQLKKAAYHSGK 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F+ T G D I A EL +L +R+ + DE++ DL + +G+ G +
Sbjct: 66 FLLTLEGFDTIEKAQELAGAELLLQREQLPPP--DADEYYWHDLLGLSVVTNEGQALGII 123
Query: 120 CGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +++ ++ +LIP + VN+ + I P+ L+
Sbjct: 124 KDILETGANDVYLVRDDATKREYLIPAIASVISSVNIHTGTMTITPLEGLLD 175
>gi|254382008|ref|ZP_04997370.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
gi|194340915|gb|EDX21881.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
Length = 196
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLETEPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR++ L A+ + E EEDE+++ L +++ G G++ +
Sbjct: 63 FEGVKDRTGAEALRNILLIAEVDPTELPE-EEDEYYDHQLMDLDVVLEDGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ + + ++ +IPF + V E++L+E + +I P +++ D
Sbjct: 122 HLPSQDLFIVERPDGTEVMIPFVEEIVAEIDLEEQRCVITPPPGLIDDRAEIASARDA 179
>gi|217979018|ref|YP_002363165.1| 16S rRNA-processing protein RimM [Methylocella silvestris BL2]
gi|217504394|gb|ACK51803.1| 16S rRNA processing protein RimM [Methylocella silvestris BL2]
Length = 199
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMY-RKNKRFI 61
D+LVL+ G HG+ GE+ + S+ NP ++ Y ++ + IL K F+
Sbjct: 12 DRLVLIGRFGAPHGVRGELRLQSFTENPAAISSYGPLTDRLGAKAFSILTARAVKPDLFV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A L +++++ R+ EDEF+ DL +E D +G+V
Sbjct: 72 VKLKGVDDRTAAEALTNVEVFVAREKLPAA--AEDEFYLADLIGLEALDASRAPFGRVKN 129
Query: 122 VYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPI 165
V +FGAG ILEI+ L+PFT+ E++L I+IDP
Sbjct: 130 VLDFGAGDILEIEPAGGGETLLLPFTRQVAPEIDLAAGFIVIDPP 174
>gi|170725616|ref|YP_001759642.1| 16S rRNA-processing protein RimM [Shewanella woodyi ATCC 51908]
gi|238688673|sp|B1KI69|RIMM_SHEWM RecName: Full=Ribosome maturation factor rimM
gi|169810963|gb|ACA85547.1| 16S rRNA processing protein RimM [Shewanella woodyi ATCC 51908]
Length = 176
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ IG++HG+ G + I +Y + + Y + + RE+++ + +
Sbjct: 1 MSSKQEPVVLGKIGSSHGIKGWLKITTYTESVEGIFDYSPWLIKEQGEWREVKVTQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A+ G++ A L + ++ + +EL EDEF+ DL E + +G
Sbjct: 61 GKAVVASLEGVETRDQAQMLTNCEIAVSAEQM--QELPEDEFYWRDLIGCEVTNTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + VLEVNL E +IL+D
Sbjct: 119 GKVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTEQFVLEVNLTEKQILVD 171
>gi|229525222|ref|ZP_04414627.1| 16S rRNA processing protein RimM [Vibrio cholerae bv. albensis
VL426]
gi|229338803|gb|EEO03820.1| 16S rRNA processing protein RimM [Vibrio cholerae bv. albensis
VL426]
Length = 184
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A+ L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDANLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 183
>gi|126698852|ref|YP_001087749.1| putative 16S rRNA processing protein [Clostridium difficile 630]
gi|254974800|ref|ZP_05271272.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-66c26]
gi|255092188|ref|ZP_05321666.1| putative 16S rRNA processing protein [Clostridium difficile CIP
107932]
gi|255306212|ref|ZP_05350384.1| putative 16S rRNA processing protein [Clostridium difficile ATCC
43255]
gi|255313927|ref|ZP_05355510.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-76w55]
gi|255516606|ref|ZP_05384282.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-97b34]
gi|255649706|ref|ZP_05396608.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-37x79]
gi|260682862|ref|YP_003214147.1| putative 16S rRNA processing protein [Clostridium difficile CD196]
gi|260686460|ref|YP_003217593.1| putative 16S rRNA processing protein [Clostridium difficile R20291]
gi|306519819|ref|ZP_07406166.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-32g58]
gi|123174578|sp|Q18BB6|RIMM_CLOD6 RecName: Full=Ribosome maturation factor rimM
gi|115250289|emb|CAJ68111.1| 16S rRNA processing protein RimM [Clostridium difficile]
gi|260209025|emb|CBA62124.1| putative 16S rRNA processing protein [Clostridium difficile CD196]
gi|260212476|emb|CBE03385.1| putative 16S rRNA processing protein [Clostridium difficile R20291]
Length = 171
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D ELEE EFF D+ ME GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVSRED--SRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|30263845|ref|NP_846222.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Ames]
gi|47529270|ref|YP_020619.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227813250|ref|YP_002813259.1| 16S rRNA processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229600064|ref|YP_002868079.1| 16S rRNA processing protein RimM [Bacillus anthracis str. A0248]
gi|254683450|ref|ZP_05147310.1| 16S rRNA-processing protein RimM [Bacillus anthracis str.
CNEVA-9066]
gi|254735880|ref|ZP_05193586.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Western
North America USA6153]
gi|254751179|ref|ZP_05203218.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Vollum]
gi|254756727|ref|ZP_05208756.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Australia
94]
gi|33301488|sp|Q81WJ5|RIMM_BACAN RecName: Full=Ribosome maturation factor rimM
gi|254797741|sp|C3P5P3|RIMM_BACAA RecName: Full=Ribosome maturation factor rimM
gi|254797742|sp|C3L785|RIMM_BACAC RecName: Full=Ribosome maturation factor rimM
gi|30258489|gb|AAP27708.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Ames]
gi|47504418|gb|AAT33094.1| 16S rRNA processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005104|gb|ACP14847.1| 16S rRNA processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229264472|gb|ACQ46109.1| 16S rRNA processing protein RimM [Bacillus anthracis str. A0248]
Length = 171
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V + GA + IK + LIP+ VL+VN++ + I L
Sbjct: 119 GTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVTEGLL 171
>gi|254437096|ref|ZP_05050590.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
gi|198252542|gb|EDY76856.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
Length = 183
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 5/185 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNK 58
M D +++ TI + G+NG+V + S+ +P L Y + + ++ + I+ +
Sbjct: 1 MPMSDDRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIMTIVIKGQTKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA GI A LR + LYA+R L +DEF++TDL + T+D G G+
Sbjct: 61 SLIARVDGITTKEEADGLRGMDLYAQRDQLPS--LPDDEFYHTDLVGLMTYDTGGAKLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V V GA +LEI + +K T L+PFTK V V+L +I++DP +
Sbjct: 119 VKAVQTNGADDLLEIISPSDKDTVLVPFTKANVPTVDLASGRIVVDPPRGLFADEADTQD 178
Query: 178 QYDCP 182
Sbjct: 179 TSAAD 183
>gi|262164014|ref|ZP_06031753.1| 16S rRNA processing protein RimM [Vibrio mimicus VM223]
gi|262027542|gb|EEY46208.1| 16S rRNA processing protein RimM [Vibrio mimicus VM223]
Length = 182
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 7 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 67 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYNL 124
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 125 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 181
>gi|15640584|ref|NP_230213.1| 16S rRNA-processing protein RimM [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|147674058|ref|YP_001216061.1| 16S rRNA-processing protein RimM [Vibrio cholerae O395]
gi|153216300|ref|ZP_01950390.1| 16S rRNA processing protein RimM [Vibrio cholerae 1587]
gi|153823559|ref|ZP_01976226.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|153827344|ref|ZP_01980011.1| 16S rRNA processing protein RimM [Vibrio cholerae MZO-2]
gi|227080745|ref|YP_002809296.1| 16S rRNA processing protein [Vibrio cholerae M66-2]
gi|229507173|ref|ZP_04396679.1| 16S rRNA processing protein RimM [Vibrio cholerae BX 330286]
gi|229509158|ref|ZP_04398643.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|229519632|ref|ZP_04409075.1| 16S rRNA processing protein RimM [Vibrio cholerae RC9]
gi|229520858|ref|ZP_04410280.1| 16S rRNA processing protein RimM [Vibrio cholerae TM 11079-80]
gi|229530375|ref|ZP_04419763.1| 16S rRNA processing protein RimM [Vibrio cholerae 12129(1)]
gi|229606149|ref|YP_002876797.1| 16S rRNA-processing protein RimM [Vibrio cholerae MJ-1236]
gi|254292065|ref|ZP_04962841.1| 16S rRNA processing protein RimM [Vibrio cholerae AM-19226]
gi|254850799|ref|ZP_05240149.1| 16S rRNA-processing protein [Vibrio cholerae MO10]
gi|255744213|ref|ZP_05418166.1| 16S rRNA processing protein RimM [Vibrio cholera CIRS 101]
gi|262147227|ref|ZP_06028029.1| 16S rRNA processing protein RimM [Vibrio cholerae INDRE 91/1]
gi|262169871|ref|ZP_06037561.1| 16S rRNA processing protein RimM [Vibrio cholerae RC27]
gi|297580695|ref|ZP_06942621.1| 16S rRNA-processing protein [Vibrio cholerae RC385]
gi|298500686|ref|ZP_07010489.1| 16S rRNA processing protein RimM [Vibrio cholerae MAK 757]
gi|172047728|sp|A5F9A8|RIMM_VIBC3 RecName: Full=Ribosome maturation factor rimM
gi|254797770|sp|C3LS52|RIMM_VIBCM RecName: Full=Ribosome maturation factor rimM
gi|9654992|gb|AAF93730.1| 16S rRNA processing protein RimM [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124114342|gb|EAY33162.1| 16S rRNA processing protein RimM [Vibrio cholerae 1587]
gi|126518913|gb|EAZ76136.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|146315941|gb|ABQ20480.1| 16S rRNA processing protein RimM [Vibrio cholerae O395]
gi|149738739|gb|EDM53081.1| 16S rRNA processing protein RimM [Vibrio cholerae MZO-2]
gi|150422013|gb|EDN13984.1| 16S rRNA processing protein RimM [Vibrio cholerae AM-19226]
gi|227008633|gb|ACP04845.1| 16S rRNA processing protein [Vibrio cholerae M66-2]
gi|227012388|gb|ACP08598.1| 16S rRNA processing protein [Vibrio cholerae O395]
gi|229332148|gb|EEN97636.1| 16S rRNA processing protein RimM [Vibrio cholerae 12129(1)]
gi|229342091|gb|EEO07087.1| 16S rRNA processing protein RimM [Vibrio cholerae TM 11079-80]
gi|229344321|gb|EEO09296.1| 16S rRNA processing protein RimM [Vibrio cholerae RC9]
gi|229353730|gb|EEO18666.1| 16S rRNA processing protein RimM [Vibrio cholerae B33]
gi|229355918|gb|EEO20838.1| 16S rRNA processing protein RimM [Vibrio cholerae BX 330286]
gi|229368804|gb|ACQ59227.1| 16S rRNA processing protein RimM [Vibrio cholerae MJ-1236]
gi|254846504|gb|EET24918.1| 16S rRNA-processing protein [Vibrio cholerae MO10]
gi|255738153|gb|EET93545.1| 16S rRNA processing protein RimM [Vibrio cholera CIRS 101]
gi|262021605|gb|EEY40316.1| 16S rRNA processing protein RimM [Vibrio cholerae RC27]
gi|262031324|gb|EEY49936.1| 16S rRNA processing protein RimM [Vibrio cholerae INDRE 91/1]
gi|297535111|gb|EFH73946.1| 16S rRNA-processing protein [Vibrio cholerae RC385]
gi|297540467|gb|EFH76525.1| 16S rRNA processing protein RimM [Vibrio cholerae MAK 757]
Length = 184
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 183
>gi|258623028|ref|ZP_05718041.1| 16S rRNA-processing protein [Vibrio mimicus VM573]
gi|258623818|ref|ZP_05718775.1| 16S rRNA-processing protein [Vibrio mimicus VM603]
gi|258583941|gb|EEW08733.1| 16S rRNA-processing protein [Vibrio mimicus VM603]
gi|258584641|gb|EEW09377.1| 16S rRNA-processing protein [Vibrio mimicus VM573]
Length = 184
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 183
>gi|127511997|ref|YP_001093194.1| 16S rRNA-processing protein [Shewanella loihica PV-4]
gi|171855242|sp|A3QBT7|RIMM_SHELP RecName: Full=Ribosome maturation factor rimM
gi|126637292|gb|ABO22935.1| 16S rRNA processing protein RimM [Shewanella loihica PV-4]
Length = 176
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G +HG+ G + I SY ++ D+ Y + + RE+++ + +
Sbjct: 1 MSSHQEPVVLGKLGASHGIKGWLKITSYTDSVEDIFDYSPWLIKEQGEWREVKVAQWRYQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K IA G+ A L + ++ + K L EDEF+ DL E + +G
Sbjct: 61 GKAIIAALEGVTTRDQAQMLTNCEIAIPAEAMKA--LPEDEFYWRDLIGCEVVNTKGYKM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + +LEVNL E +IL+D
Sbjct: 119 GKVDQIVETGSNDVLLVKANAKDGFGKTERMIPFVTEQFILEVNLAEKQILVD 171
>gi|291524520|emb|CBK90107.1| 16S rRNA processing protein RimM [Eubacterium rectale DSM 17629]
Length = 168
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN--RELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ + V+ N R+L I + +
Sbjct: 1 MEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GID+I+ + + L+ R++ LEE+E+F DL + +G+ G +
Sbjct: 61 VILKFKGIDDINDVEKYKKAPLFVTREN--AVPLEENEYFIADLIGLSVTSDEGEELGVI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + +K LIP K +L+V+++ + + +A
Sbjct: 119 DDVLQTGANDVYVVKKAGANDLLIPAIKDCILDVDVENGTMKVHLLAGL 167
>gi|157960878|ref|YP_001500912.1| 16S rRNA-processing protein RimM [Shewanella pealeana ATCC 700345]
gi|189040854|sp|A8H1E0|RIMM_SHEPA RecName: Full=Ribosome maturation factor rimM
gi|157845878|gb|ABV86377.1| 16S rRNA processing protein RimM [Shewanella pealeana ATCC 700345]
Length = 176
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ IG+++G+ G + I +Y ++ + Y + + RE+++ + +
Sbjct: 1 MSSKQEPVILGKIGSSYGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ +D L EDEF+ DL E + +G
Sbjct: 61 GKAVVACLEGVSTRDEAQALTNCEIAVPADQMQD--LPEDEFYWRDLIGCEVINTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K + +IPF + +V+L +IL+D
Sbjct: 119 GTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVD 171
>gi|65321170|ref|ZP_00394129.1| COG0806: RimM protein, required for 16S rRNA processing [Bacillus
anthracis str. A2012]
Length = 171
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKXTSHRQH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G N++ + + L EL E E++ ++ +G+
Sbjct: 61 KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + V + GA + IK + LIP+ VL+VN++ + I L
Sbjct: 119 GTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVTEGLL 171
>gi|323135866|ref|ZP_08070949.1| 16S rRNA processing protein RimM [Methylocystis sp. ATCC 49242]
gi|322398957|gb|EFY01476.1| 16S rRNA processing protein RimM [Methylocystis sp. ATCC 49242]
Length = 177
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNK 58
M LVL+ G HG+ GE+ + SY +P+ + Y ++ + ++ + + K
Sbjct: 1 MAAEKNLVLLGRFGAPHGVRGEIRLQSYTADPLAIASYGPLTDKSGTKSFKLASVRPQGK 60
Query: 59 -RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A G+ + A L ++LY R+ +EDEF+ DL + R+G G
Sbjct: 61 DMLVARVEGVSDRTGAEALTGVELYLPREKLPPP--DEDEFYLADLVGLRAQTREGVEIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+V V NFGAG ILE+ + PFT+ V++ E +++I+P +
Sbjct: 119 RVVAVRNFGAGDILEVTPPDGGETLMFPFTRAVAPVVSIAEGRVIIEPPMEIGDEDAPD 177
>gi|154503293|ref|ZP_02040353.1| hypothetical protein RUMGNA_01117 [Ruminococcus gnavus ATCC 29149]
gi|153795960|gb|EDN78380.1| hypothetical protein RUMGNA_01117 [Ruminococcus gnavus ATCC 29149]
Length = 172
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 83/173 (47%), Gaps = 8/173 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++ + + I +THG+ GEV + ++P L + +L + + L + + +
Sbjct: 1 MEQFLQVGVISSTHGIRGEVKVFPTTDDPNRFKKLKKVILETKKEKLSLEVQGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYWG 117
I F GIDNI+ + + L+ R+D LEEDE+F DL ME + + + +G
Sbjct: 61 VIVKFKGIDNINDIEQYKGCSLFVSRED--AVALEEDEYFIADLIGMEVYTDENPEELFG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V GA + +++ LIP + +L V+++ K+ + + L+
Sbjct: 119 TLKDVIETGANEVYLVESKTHGEVLIPAIRQCILSVDVKAQKMQVHLLNGLLD 171
>gi|289550971|ref|YP_003471875.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
gi|289180503|gb|ADC87748.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
Length = 166
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + + NDN EL + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEVLTLKHNNDNVELTVTSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G DNI+ + LY +R D + EL E EF+ +D+ F+ + G+V +
Sbjct: 63 KFEGFDNINDVESYKGDYLYQER-DHEGIELAEHEFYYSDIIGCTVFNGE-IPIGRVTNI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K +K ++IP+ V +V+++ I+I P+ L+
Sbjct: 121 IETGANDVWVVK--GDKEYMIPYIADVVKDVDIENKTIMITPLEGLLD 166
>gi|225568164|ref|ZP_03777189.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
gi|225162883|gb|EEG75502.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
Length = 168
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSN-DNRELRILKMYRKNKR 59
++K++ + I +THG+ GEV + ++P L + +L + D +L I + +
Sbjct: 1 MEKMLKVGVITSTHGIRGEVKVFPTTDDPGRFKVLKQVILDTGKDTLQLEIENVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + L +RQD LE+ E+F D+ M+ G+ +G +
Sbjct: 61 VILKFKGIDNINDVERYKRCALLVERQD--AVPLEDGEYFVADMLGMKVQTEDGELFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + I + L+P + + +++++ + I + +
Sbjct: 119 ADVMETGANDVYVIASPAHGEVLVPAIRECIQNIDIEQGMMTIHLMEGLI 168
>gi|229512831|ref|ZP_04402298.1| 16S rRNA processing protein RimM [Vibrio cholerae TMA 21]
gi|229350080|gb|EEO15033.1| 16S rRNA processing protein RimM [Vibrio cholerae TMA 21]
Length = 184
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDLREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 183
>gi|323702670|ref|ZP_08114331.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
gi|323532333|gb|EGB22211.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
Length = 169
Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
++ + + I T G+ GEV + + P + ++L R+L I + + +
Sbjct: 3 EEFITVGEIVNTQGIRGEVRVLPTTDFPERFKQTKKIFLLLQGQRRQLTINRAWEHKQFI 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F + ++ A +L+ L R + D L +D ++ ++ ++ D +G+ G+V
Sbjct: 63 ILKFDEVADMSEAEKLKGGLLQVPRTELTD--LPKDCYYIFEIVGLKVIDERGQELGKVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K K LIP K V ++++ + ++ +
Sbjct: 121 DVLRTGANDVYVVKRDQGKDILIPALKSVVKKIDVPAGLMQVELPEGLI 169
>gi|312115619|ref|YP_004013215.1| 16S rRNA processing protein RimM [Rhodomicrobium vannielii ATCC
17100]
gi|311220748|gb|ADP72116.1| 16S rRNA processing protein RimM [Rhodomicrobium vannielii ATCC
17100]
Length = 193
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKN-KRFI 61
+ VL+ IG HGL GEV I ++ P D+ Y S + R I M + I
Sbjct: 3 EDKVLLGRIGGAHGLRGEVKIATFTAAPEDITAYGPLSSADGTRTFVITGMRAASPGSVI 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ + A L ++LY R E E+DEF+ +DL + +G G+V G
Sbjct: 63 ARLKGVADRTQAEALNGIELYVPRDSLPPPE-EDDEFYYSDLIGLAAVSPEGAAVGKVIG 121
Query: 122 VYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKI-LIDPIAAGLNNTTMKNPQY 179
V+NFGAG ++E++ E+ LIPF V V+L ++ +I P G + +
Sbjct: 122 VHNFGAGDLIEVRFGDERQPVLIPFDNAHVPHVDLGAGRVTVIRPAFEGADASERGAKSA 181
Query: 180 D 180
D
Sbjct: 182 D 182
>gi|126738059|ref|ZP_01753780.1| 16S rRNA processing protein RimM [Roseobacter sp. SK209-2-6]
gi|126720556|gb|EBA17261.1| 16S rRNA processing protein RimM [Roseobacter sp. SK209-2-6]
Length = 167
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFI 61
+ +L+ + I ++G+ GEV + S+ P ++ Y S + ++ + F
Sbjct: 1 MSELICVGAIAGSYGVRGEVRLKSFCAVPEEIEAYSPLSSEDGSQSYSLTLTRAIKGGFS 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G++ A ++ LKL+A R L DE++ DL ME +D G G V
Sbjct: 61 GYLGGVETKEQADAIKGLKLFAPRDRLPS--LPSDEYYYADLVGMEVYDTGGVLLGTVKS 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N GA +LE++ + T L+PFT AV V+L++ +I+ DP
Sbjct: 119 VQNHGASDLLELQGEAIKGTALLPFTMAAVPTVDLEQGRIIADPPEGL 166
>gi|255100272|ref|ZP_05329249.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-63q42]
Length = 171
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLAVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D ELEE EFF D+ ME GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVARED--SRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|99082449|ref|YP_614603.1| 16S rRNA-processing protein RimM [Ruegeria sp. TM1040]
gi|122397563|sp|Q1GDC5|RIMM_SILST RecName: Full=Ribosome maturation factor rimM
gi|99038729|gb|ABF65341.1| 16S rRNA processing protein RimM [Ruegeria sp. TM1040]
Length = 171
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIA 62
+ L+ + + + G+ GEV + S+ N ++ Y +L ++ + F A
Sbjct: 6 EDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLGADGQTRYTLAITRAIKGGFAA 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
++ A L+ ++LYA R L +DEF++ DL +E +D G G+V V
Sbjct: 66 RIVDVETKEQADALKGVQLYAPRDRLPS--LPDDEFYHADLIGLEVYDTGGTLLGRVKAV 123
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
N+GA +LE+ T L+PFTK AV V+L + +I+ DP A
Sbjct: 124 QNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQGRIIADPPAG 169
>gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
gi|159177984|gb|EDP62531.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
Length = 179
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFI 61
+ V + + HG+ G+V + + NP D+ Y ++ +R ++ R I
Sbjct: 1 MVDRVCLGAVAGAHGVRGQVKVKPFTENPDDVAAYGPVEDERGDRRFKLSVTGRHKDTVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + ++A LR +LY R E EE F++ DL + G+ G+V
Sbjct: 61 VRIDGVSDRNAAEALRGTRLYVARAVLP--EPEEGAFYHADLIGLSVVSVGGETLGRVTS 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V++FGAG ++E + ++PFT V EV+L ++++DP + Q
Sbjct: 119 VHDFGAGDLVEYVDASGGQHMLPFTLAMVPEVDLAGGRMVVDPPEESPDEGPEDLAQ 175
>gi|126734921|ref|ZP_01750667.1| 16S rRNA processing protein RimM [Roseobacter sp. CCS2]
gi|126715476|gb|EBA12341.1| 16S rRNA processing protein RimM [Roseobacter sp. CCS2]
Length = 171
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNREL-RILKMYRKNKRFI 61
+ V++ IG G+ GEV + SY +P + Y LY+ D R +I+ + F
Sbjct: 1 MSDRVIVGAIGGAFGVQGEVRLKSYCADPQAIADYTPLYTEDGRAFAQIVLTGQLKNGFT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ A LR++ LYA R L +DE++ DL + D G G V
Sbjct: 61 ARIDGVITKEDADALRNVNLYAPRDIMPS--LPDDEYYYADLIGLTVVDTGGATLGTVKN 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GAG +LEI T L+PFT+ AV V+L +I+ DP +
Sbjct: 119 VMDHGAGDLLEIIVPGASDTILLPFTQAAVPTVDLTAKRIVADPPDGLFPSD 170
>gi|14423897|sp|Q9KUF9|RIMM_VIBCH RecName: Full=Ribosome maturation factor rimM
Length = 182
Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 7 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 67 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 124
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 125 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 181
>gi|56460826|ref|YP_156107.1| 16S rRNA-processing protein RimM [Idiomarina loihiensis L2TR]
gi|67461320|sp|Q5QUU9|RIMM_IDILO RecName: Full=Ribosome maturation factor rimM
gi|56179836|gb|AAV82558.1| RimM [Idiomarina loihiensis L2TR]
Length = 174
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRILKMYRKN 57
M + ++ +++ IG +G+ G + + S+ ++P + Y + RE+++++ R N
Sbjct: 1 MQQSEQ-IVVGRIGAVYGVKGWLKVQSFTDDPESIFEYSPWLLSQKTEREMKVVEWRRHN 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
IA GI + A+ L + + L +DEF+ DL M + G G
Sbjct: 60 NGLIARLEGISDRDEAARLTGADICITADELPA--LADDEFYWRDLIGMRVVNTNGYDMG 117
Query: 118 QVCGVYNFGAGSILEIKNT-----MEKTFLIPFTK-FAVLEVNLQENKILIDPI 165
V + + +L +K + LIPF + V V+ + +I ++
Sbjct: 118 VVEQIMPTASNDVLVVKANSNDGFGKSERLIPFIQSEYVTAVDKEAKQIQVEWP 171
>gi|260767212|ref|ZP_05876154.1| 16S rRNA processing protein RimM [Vibrio furnissii CIP 102972]
gi|260617820|gb|EEX42997.1| 16S rRNA processing protein RimM [Vibrio furnissii CIP 102972]
gi|315181157|gb|ADT88071.1| 16S rRNA-processing protein [Vibrio furnissii NCTC 11218]
Length = 184
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K D+ +++ G ++G+ G + + SY ++ + Y + + E ++ R
Sbjct: 9 MSKQDEKIVVGKFGASYGIRGWLKVFSYTDDAESIFDYSPWFVNHKGEWVEYKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK +A G+D A+ + + ++ EL EDEF+ +L M+ QG
Sbjct: 69 NKGMVAKLQGLDVREDANLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTQGYNL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+V + G+ +L +K +K LIPF + + ++ +I +D A
Sbjct: 127 GEVVDMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKNIDRTAQRIEVDWDPA 183
>gi|329766863|ref|ZP_08258391.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
gi|328837588|gb|EGF87213.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
Length = 169
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDN---RELRILKMYRKNKRFI 61
+ + I TH L GEV + S + +L + N +E+ + +
Sbjct: 3 LKVGKIVNTHSLKGEVKVISSTDFEEQRFEKGTELLITRGNQVVKEVTVESYRTHKNNLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID+I A +L++L++ + ELEE+EF+ ++ E FD GK G++
Sbjct: 63 VKFVGIDSIEEAEKLKNLQIKIDSDNI--GELEENEFYFHEIIGCEVFDENGKSLGEISE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK+ K LIP+ + V +++++ KI I+ + ++
Sbjct: 121 ILTPGANDVWVIKSQNGKEILIPYIEDIVKKIDVENKKIDIEVMEGLID 169
>gi|262172353|ref|ZP_06040031.1| 16S rRNA processing protein RimM [Vibrio mimicus MB-451]
gi|261893429|gb|EEY39415.1| 16S rRNA processing protein RimM [Vibrio mimicus MB-451]
Length = 176
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 1 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIEQKGEWVEYKVEGWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ + EL EDEF+ +L M+ G
Sbjct: 61 NKGWVVKLQGLDVREDAHLLTNFEIAIDPESLP--ELSEDEFYWRELFGMQVVTTSGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 119 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 175
>gi|328885335|emb|CCA58574.1| 16S rRNA processing protein RimM [Streptomyces venezuelae ATCC
10712]
Length = 183
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 5/181 (2%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIATF 64
++A IG HG+ GEV ++ + P L + D L I + R + F
Sbjct: 2 VVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLLTDPASAGPLTIETGRVHSGRLLLRF 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + ++A LR++ L A+ + E EEDE+++ L +++ G G++ + +
Sbjct: 62 EGVRDRNAAEALRNILLIAEVDPTELPE-EEDEYYDHQLMDLDVVLADGTEIGRITEISH 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPLD 184
+ + ++ +IPF + V E++L+E + +IDP +++ D +
Sbjct: 121 LPSQDLFIVERPDGTELMIPFVESIVTEIDLEEQRAVIDPPPGLIDDRAEIVSSRDESGE 180
Query: 185 S 185
Sbjct: 181 D 181
>gi|27467832|ref|NP_764469.1| rimM protein [Staphylococcus epidermidis ATCC 12228]
gi|251810669|ref|ZP_04825142.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876329|ref|ZP_06285196.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|293366796|ref|ZP_06613472.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|33301521|sp|Q8CPH7|RIMM_STAES RecName: Full=Ribosome maturation factor rimM
gi|27315377|gb|AAO04511.1|AE016747_8 rimM protein [Staphylococcus epidermidis ATCC 12228]
gi|251805829|gb|EES58486.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295354|gb|EFA87881.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|291319097|gb|EFE59467.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329724354|gb|EGG60866.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU144]
gi|329736333|gb|EGG72605.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU028]
gi|329736626|gb|EGG72892.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU045]
Length = 167
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL--RILKMYRKNKRFIA 62
V + I THG+ GEV + S + +L ++N E+ + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINEIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GEKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD 167
>gi|331085166|ref|ZP_08334252.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407949|gb|EGG87439.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 189
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNR--ELRILKMYRKNKR 59
+++ + I +THG+ GEV + ++ + +VL L + ++ +
Sbjct: 22 MEQQFQVGVISSTHGVRGEVKVFPTTDDVKRFKKLKHVLLDTGKEQLPLEVEQVKFFKQF 81
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L R+D +L++DE+F D+ M F G +G +
Sbjct: 82 AILKFKGIDNINDIEKYKGKSLLVDRKD--AVKLKKDEYFIADMIGMHVFTEDGAEFGTL 139
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + I T K L+P K +L V+++E K+ I +
Sbjct: 140 RDVLETGANDVYIIDTTDGKEVLVPAIKQCILNVDIEEQKMTIHLLEGL 188
>gi|172057908|ref|YP_001814368.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
gi|229564322|sp|B1YIM5|RIMM_EXIS2 RecName: Full=Ribosome maturation factor rimM
gi|171990429|gb|ACB61351.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
Length = 169
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNKRFI 61
+ + +A I THGL GE+ + + + P + L SN ++ YRK+K+FI
Sbjct: 2 EWLEVAKIANTHGLKGELKLLASTDFPEQRFKVGNEVFLESNGIYTPFMISSYRKHKQFI 61
Query: 62 -ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
TF G+ +I+ + + LKLY + +EL E EF+ ++ FD + + G V
Sbjct: 62 MVTFKGMQHINDVEKYKGLKLYVHPEAL--QELGEHEFYYHEIIGCTVFDGEDE-IGVVS 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + IK +K LIP+ + V ++++ +I I P+ +
Sbjct: 119 EILETGANDVWTIKRPGKKDVLIPYIEQVVASIDVEAKRIQITPLPGLIEG 169
>gi|260437021|ref|ZP_05790837.1| 16S rRNA processing protein RimM [Butyrivibrio crossotus DSM 2876]
gi|292810330|gb|EFF69535.1| 16S rRNA processing protein RimM [Butyrivibrio crossotus DSM 2876]
Length = 170
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
++ L+ + I + HG+ GEV + ++P+ + S + L + + +
Sbjct: 1 MEDLLRVGVITSPHGIAGEVKVYPTTDDPMRFKNLKECILKSSREMLNLHVAGVKFQKNL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +NI+ + R +LY R++ +LEE E+F DL ++ D GK G++
Sbjct: 61 VILKFKEFNNINEVEKYRQAELYVTREN--AVKLEEGEYFICDLIGLKVIDEFGKTIGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + E+ K +L P K +L V+L E + + + L+
Sbjct: 119 TDVIQTGANDVYEVTTPERKKYLFPVIKECILNVDLDEGIVTVHIMKGLLD 169
>gi|84394291|ref|ZP_00993016.1| 16S rRNA-processing protein [Vibrio splendidus 12B01]
gi|84375094|gb|EAP92016.1| 16S rRNA-processing protein [Vibrio splendidus 12B01]
Length = 184
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + + ++M +G+T+G+ G + + SY +N + Y + E ++ R
Sbjct: 9 MSEQNNRIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLNQKGKWVEYKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ ++ +G+D A + + ++ EL EDEF+ +L M+ F +G
Sbjct: 69 GQGYVCKLAGLDVREDAQLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVFTTKGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+V + G+ +L IK +K L+P+ + + +V+ + +I +D
Sbjct: 127 GEVTDLLETGSNDVLVIKANLKDAFGQKERLVPYLEEQVIKKVDREARRIEVDWDPG 183
>gi|323489561|ref|ZP_08094788.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
gi|323396692|gb|EGA89511.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
Length = 171
Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRE---LRILKMYRKNK 58
+ + I THG+ GEV + S + P + + L++ D ++ ++I +
Sbjct: 2 QWFNVGKIVNTHGIRGEVRVLSRTDFPEERFAVGTKLGLFTPDAKKPIMVKIASHRQHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF G NI+ ++ L D ELEE+ F++ ++ + +G+ G+
Sbjct: 62 FELLTFEGYPNINDVEPFKESYLRIAEHDL--TELEENAFYHHEILGCAVYSTEGQELGK 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + E+ K IP+T+ V EV++ E K++I+ I L
Sbjct: 120 ITEILETGANDVWEVTPEKGKKHYIPYTEEIVKEVDIDEKKVIIEVIEGLL 170
>gi|153854840|ref|ZP_01996063.1| hypothetical protein DORLON_02068 [Dorea longicatena DSM 13814]
gi|149752542|gb|EDM62473.1| hypothetical protein DORLON_02068 [Dorea longicatena DSM 13814]
Length = 187
Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSN--DNRELRILKMYRKN 57
V +++L+ + I +THG+ GEV + ++P ++VL + + L + +
Sbjct: 18 VFMEELLQVGVITSTHGVRGEVKVFPTTDDPNRFKSLKHVLLDTGREKKSLEVQGVKFFK 77
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ I F GIDNI+ + L +R+D ELEEDE+F D+ +E K +G
Sbjct: 78 QFVILKFKGIDNINDIERYKRCPLLVERKD--AVELEEDEYFIADMIGIEVVTEDDKPFG 135
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ V GA + I L+P + +L+V+++ K+ I + +
Sbjct: 136 TLKDVMETGANDVYVIDTDEHGEVLVPAIRECILDVDIENQKMKIHLMDGLI 187
>gi|29829184|ref|NP_823818.1| 16S rRNA-processing protein RimM [Streptomyces avermitilis MA-4680]
gi|48474815|sp|Q82JW2|RIMM_STRAW RecName: Full=Ribosome maturation factor rimM
gi|29606290|dbj|BAC70353.1| putative 16S rRNA processing protein [Streptomyces avermitilis
MA-4680]
Length = 186
Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASVGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + + A LR+ L A+ + E + DE+++ L +++ + G G++ +
Sbjct: 63 FEGVRDRNGAEALRNTLLIAEVDPDEVPE-DPDEYYDHQLMDLDVVTKDGTEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ + IPF + V+E++L+E + +IDP +++ +
Sbjct: 122 HLPSQDLFVVERSDGSEVYIPFVEEIVVEIDLEEQRAVIDPPPGLIDDRAEVDSSDTEAA 181
Query: 184 DSA 186
A
Sbjct: 182 TEA 184
>gi|319401470|gb|EFV89680.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
FRI909]
Length = 167
Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL--RILKMYRKNKRFIA 62
V + I THG+ GEV + S + +L ++N E+ + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVDSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINEIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GEKEYLIPYIEDVVKDIDIENKTIKITPMEGLLD 167
>gi|86146311|ref|ZP_01064635.1| 16S rRNA-processing protein [Vibrio sp. MED222]
gi|218710518|ref|YP_002418139.1| 16S rRNA-processing protein RimM [Vibrio splendidus LGP32]
gi|254797771|sp|B7VK28|RIMM_VIBSL RecName: Full=Ribosome maturation factor rimM
gi|85835790|gb|EAQ53924.1| 16S rRNA-processing protein [Vibrio sp. MED222]
gi|218323537|emb|CAV19735.1| 16S rRNA processing protein RimM [Vibrio splendidus LGP32]
Length = 184
Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + ++ ++M +G+T+G+ G + + SY +N + Y + + E ++ R
Sbjct: 9 MSEQNERIVMGKLGSTYGIRGWLKVFSYTDNAESIFDYSPWYLKLKGEWVEYKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ ++ +G+D A + + ++ EL EDEF+ +L M+ F +G
Sbjct: 69 GQGYVCKLAGLDVREDAQLMTNFEIAIDPASLP--ELSEDEFYWRELFGMQVFTTKGYNL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+V + G+ +L IK +K LIP+ + + +V+ + +I +D
Sbjct: 127 GEVTDLLETGSNDVLVIKANLKDAFGQKERLIPYLEEQVIKKVDREARRIEVDWDPG 183
>gi|167758977|ref|ZP_02431104.1| hypothetical protein CLOSCI_01323 [Clostridium scindens ATCC 35704]
gi|167663384|gb|EDS07514.1| hypothetical protein CLOSCI_01323 [Clostridium scindens ATCC 35704]
Length = 168
Score = 180 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNREL--RILKMYRKNKR 59
+++L+ + I +THG+ GEV + ++ V+ L I + +
Sbjct: 1 MEELLQVGVITSTHGIRGEVKVFPTTDDAKRFRELKDVMLDTGKETLSLEIEGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + L+ R+D ELEEDE+F D+ M+ +G+ +G +
Sbjct: 61 VILKFKGIDNINDVERYKRCPLFVNRED--AVELEEDEYFIADMIGMKVITDEGEEFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + I+ LIP K +L+V++ + I +A
Sbjct: 119 KDVMETGANDVYVIRRADGGEVLIPAIKECILDVDIPGRLMKIHVMAGL 167
>gi|84683441|ref|ZP_01011344.1| 16S rRNA processing protein RimM [Maritimibacter alkaliphilus
HTCC2654]
gi|84668184|gb|EAQ14651.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2654]
Length = 170
Score = 180 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDN-RELRILKMYRKNKRFIA 62
+ + + + G+ GEV + S+ P D+ Y L++ D R + F A
Sbjct: 3 EDRICVGAFAGSFGVGGEVRVKSFCAEPEDIETYGTLWTEDGTRSFTLSLTRAVKTGFAA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GI A L+ ++LYA R L +DEF++ DL + D G G+V V
Sbjct: 63 DVDGITTKEQADALKGVRLYADRDALPS--LPDDEFYHADLIGLTVLDTGGAEVGRVSAV 120
Query: 123 YNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAA 167
+N GAG ++E+ KT L+PFT+ V V+L +I+IDP
Sbjct: 121 HNHGAGDLIEVAGPGLKTPALVPFTRANVPTVDLTAGRIVIDPPEG 166
>gi|314933417|ref|ZP_07840782.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
gi|313653567|gb|EFS17324.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
Length = 167
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S ++ + V ++N++ + + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRFQPGENLIVKHNNEDLQYTVSSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ LY +R D +D EL+E E++ +D+ FD G+V +
Sbjct: 63 KFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEYYYSDIIGCTVFDDTDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GDKEYLIPYIEDVVKDIDVEGKSIKITPMEGLLD 167
>gi|163750614|ref|ZP_02157851.1| 16S rRNA-processing protein [Shewanella benthica KT99]
gi|161329609|gb|EDQ00600.1| 16S rRNA-processing protein [Shewanella benthica KT99]
Length = 176
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ +
Sbjct: 1 MSSKQEPVVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A+ G++ A L + ++ Q K L EDEF+ DL E + +G
Sbjct: 61 GKAVVASLEGVETRDQAQILTNCEIAVTPQQMKT--LPEDEFYWRDLIGCEVVNTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + ++EVNL E +I +D
Sbjct: 119 GKVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLAEKQITVD 171
>gi|242240275|ref|YP_002988456.1| 16S rRNA-processing protein RimM [Dickeya dadantii Ech703]
gi|242132332|gb|ACS86634.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech703]
Length = 182
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ IG+T+G+ G + + S + Y + +++ I N+ I
Sbjct: 12 NPIVLGKIGSTYGIRGWLKVFSSTEEADSIFDYQPWFIQNKGQWQQVEIESWRYHNQSLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+D+ +A+ L + ++ EL++ EF+ DL + G G+V
Sbjct: 72 IKIKHVDDRDAANLLTNCEIVVDSTQLP--ELDDGEFYWKDLIGCDVVTVSGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF + + ++L +I +D
Sbjct: 130 MMETGSNDVLVVRANLKDAYGVKERLIPFLNEQVIKHIDLSARRIEVDWDPG 181
>gi|210615862|ref|ZP_03290824.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
gi|210150065|gb|EEA81074.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
Length = 168
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++L+ + I +THG+ GEV + ++ L + +L + + L I + +
Sbjct: 1 MEQLLQVGVISSTHGVRGEVKVFPTTDDVKRFKKLKKVILDTGKEQLPLEIEGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + +L R+ +L++DE+F D+ M+ F G+ +G +
Sbjct: 61 VILKFRGIDNINDIEKYKGKRLLVDREH--AVKLKKDEYFIADMIGMDVFTEDGELFGAL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + I+ + K L+P K +L+V+++ K++I +
Sbjct: 119 KDVMETGANDVYIIEMSDGKEVLVPAIKQCILDVDIENRKMVIHLLEGL 167
>gi|110678632|ref|YP_681639.1| 16S rRNA-processing protein RimM [Roseobacter denitrificans OCh
114]
gi|123172765|sp|Q16AP0|RIMM_ROSDO RecName: Full=Ribosome maturation factor rimM
gi|109454748|gb|ABG30953.1| 16S rRNA processing protein RimM [Roseobacter denitrificans OCh
114]
Length = 168
Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
D+ + + I +G+ GE+ I S+ D+ Y + + R + + F+A
Sbjct: 3 DEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGFVA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + + A L+ ++L+A R L +DE++ TDL ++ D G+ G V V
Sbjct: 63 RIAEVSSKEEADALKGVQLFALRDQLPS--LPDDEYYYTDLIGLQVLDTGGELLGSVKTV 120
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GAG ILE++ +T L+PFT+ V V+L K++ DP L
Sbjct: 121 ADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLIADPPEGAL 168
>gi|297156874|gb|ADI06586.1| 16S rRNA-processing protein RimM [Streptomyces bingchenggensis
BCW-1]
Length = 182
Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIATFS 65
MA IG HG+ GEV ++ + P L + + + L I + R + F+
Sbjct: 1 MARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATEPASAGPLTIETGRVHSGRLLLRFA 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G + +A LR L A+ E E E+++ L +++ G G++ + +
Sbjct: 61 GFADRTAAETLRGTLLIAEVDPEDTPEDPE-EYYDHQLIDLDVVTVDGTEVGRISEISHL 119
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+L ++ +IPF V E++L+ + +IDP L+ T +
Sbjct: 120 PYQDLLIVRRPDGSEVMIPFVSEVVPEIDLEAQRAVIDPPPGLLDETQAE 169
>gi|262401734|ref|ZP_06078300.1| 16S rRNA processing protein RimM [Vibrio sp. RC586]
gi|262352151|gb|EEZ01281.1| 16S rRNA processing protein RimM [Vibrio sp. RC586]
Length = 184
Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MGKQNERLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 127 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 183
>gi|255655266|ref|ZP_05400675.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-23m63]
gi|296451251|ref|ZP_06892991.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296880397|ref|ZP_06904360.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
gi|296259857|gb|EFH06712.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296428638|gb|EFH14522.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
Length = 171
Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL GEV + ++ L + L + N +L + K+ K I G
Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLNNKLSVEKVRYKGSMVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID+I A +L++ +Y R+D ELEE EFF D+ +E GKY G + V +
Sbjct: 70 IDSIEKAEKLKNKFMYVSRED--SRELEEGEFFIADMIGIEVLTVDGKYVGILEDVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + +K +K F+IP K V +++ E K++IDPI ++
Sbjct: 128 ANDVYVVKGEEDKEFMIPAIKKFVPTIDIDERKMIIDPIKGMID 171
>gi|88860522|ref|ZP_01135160.1| 16S rRNA processing protein [Pseudoalteromonas tunicata D2]
gi|88817720|gb|EAR27537.1| 16S rRNA processing protein [Pseudoalteromonas tunicata D2]
Length = 176
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + +++ +G +G+ G + + S+ ++P+ + + + + +++ R
Sbjct: 1 MSLENTSIVVGKLGAPYGIKGWLKVHSFTDDPVGIFDFSPWLIGQQGKWQSFKVVDWRRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K FIA F+ ID+ A + +++ + EL + EF+ DL M +G
Sbjct: 61 SKGFIAKFANIDDRDQALVYTNAEIFVELSQLP--ELPQGEFYWRDLIGMSVTTDKGYSL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPF-TKFAVLEVNLQENKILID 163
G V + G+ +L +K + LIPF T +L V+ + +I +D
Sbjct: 119 GIVDDLMETGSNDVLVVKANNNDGFGQAERLIPFLTDTVILNVDAEARQITVD 171
>gi|212636511|ref|YP_002313036.1| 16S rRNA-processing protein RimM [Shewanella piezotolerans WP3]
gi|226734092|sp|B8CQI3|RIMM_SHEPW RecName: Full=Ribosome maturation factor rimM
gi|212557995|gb|ACJ30449.1| RimM protein:PRC-barrel [Shewanella piezotolerans WP3]
Length = 176
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ +
Sbjct: 1 MSSKQEPVVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLLKEQGEWREVKVLQWRMQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G++ A L + ++ + + L EDEF+ DL E + +G
Sbjct: 61 GKAVVACLEGVETRDQAQALTNCEIAVTPEQMEV--LPEDEFYWRDLIGCEVVNTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + + +V+L +IL+D
Sbjct: 119 GKVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIQKVDLTAKQILVD 171
>gi|323484789|ref|ZP_08090146.1| hypothetical protein HMPREF9474_01897 [Clostridium symbiosum
WAL-14163]
gi|323691862|ref|ZP_08106116.1| 16S rRNA processing protein RimM [Clostridium symbiosum WAL-14673]
gi|323401895|gb|EGA94236.1| hypothetical protein HMPREF9474_01897 [Clostridium symbiosum
WAL-14163]
gi|323504069|gb|EGB19877.1| 16S rRNA processing protein RimM [Clostridium symbiosum WAL-14673]
Length = 170
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNREL-RILKMYRKNKR 59
+++ + + I +THG+ GEV + ++ DL L + R L + ++
Sbjct: 1 MEQFLRVGVISSTHGIKGEVKVFPTTDDVNRYKDLKEVFLDTGKGRILMELEQVKFHKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + L R+ L DE F DL ++ +GK +G V
Sbjct: 61 VIVKFKGYDNINDIEMYKGKDLLISREH--AVSLAPDENFIIDLIGLKVVTDEGKDFGTV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + I K +L P K +L+VNL+E K+ + + L+
Sbjct: 119 KDILQTGANDVYVIDGNDGKEYLFPSIKECILDVNLEEGKVTVHILDGLLD 169
>gi|57866698|ref|YP_188388.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242242522|ref|ZP_04796967.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
gi|67461258|sp|Q5HPV2|RIMM_STAEQ RecName: Full=Ribosome maturation factor rimM
gi|57637356|gb|AAW54144.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242234030|gb|EES36342.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
Length = 167
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL--RILKMYRKNKRFIA 62
V + I THG+ GEV + S + +L ++N E+ + +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVDSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ +Y +R D +D EL E E++ +D+ F G+V +
Sbjct: 63 RFEGINNINDIEHLKGDYIYQER-DHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K EK +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWIVK--GEKEYLIPYIEDVVKDIDIENKTIKITPMEGLLD 167
>gi|308068629|ref|YP_003870234.1| 16S rRNA processing protein rimM [Paenibacillus polymyxa E681]
gi|305857908|gb|ADM69696.1| Probable 16S rRNA processing protein rimM [Paenibacillus polymyxa
E681]
Length = 171
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRK 56
+ +L + I THG+ GE+ I + + P D ++ + + + + +
Sbjct: 1 MQQLFNVGKIVNTHGIRGELKILTTTDFPEDRFAKGSELLIVPAEGKAPIPVTVETARFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A F NI+ + + L + ELEE+EF+ ++ ME G
Sbjct: 61 KNMVVAKFKEYHNINEVEKYKGTLLKVSAERL--GELEENEFYFHEVVGMEVVTEDGNEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V + GA + +K K L+P+ + +L+VN++E ++ + + L
Sbjct: 119 GVVKEILTPGANDVWVVKMPKGKELLLPYIEDVILDVNVREKRVTVRLMEGLL 171
>gi|319892248|ref|YP_004149123.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|317161944|gb|ADV05487.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|323464655|gb|ADX76808.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
ED99]
Length = 167
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S+++ + Y L + +
Sbjct: 3 VEVGKIVNTHGIKGEVKVQSHSDFTEIRFQPGEVLQAEYQGQTLLLTVKSHRMHKGLHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF G NI+ L+ LY +R D + EL+E EF+ +D+ FD + G+V +
Sbjct: 63 TFEGYTNINDIEHLKGTHLYQER-DHEAIELDEHEFYYSDIIGCTVFDGD-RPIGRVTEI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K +K LIP+ V EV+++ +I+I P+ LN
Sbjct: 121 FETGANDVWVVK--GDKEHLIPYIADVVKEVDIEGRRIVITPLEGLLNE 167
>gi|111225150|ref|YP_715944.1| 16S rRNA-processing protein RimM [Frankia alni ACN14a]
gi|122953795|sp|Q0RDP3|RIMM_FRAAA RecName: Full=Ribosome maturation factor rimM
gi|111152682|emb|CAJ64423.1| 16S rRNA processing protein rimM [Frankia alni ACN14a]
Length = 180
Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + +++ IG HG+ G+V I+ + P L + L + + + R
Sbjct: 1 MTEPIVVGRIGRPHGVRGDVTIEVRTDLPQRRFALGAVLGREGGGAPLTVAEARWHSGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDF----KDEELEEDE----FFNTDLEEMETFDRQ 112
+ F G+++ +A LRD+ L + D+E E E +++ DL +E
Sbjct: 61 LLRFQGVEDRGAAEALRDVLLTIDSAEAGPPVDDDEDAEGEGGDIWWDRDLVGLEAVTTA 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G+V V + AG +L + L+PF + V V+ +I++DP L+
Sbjct: 121 GATLGRVTDVIHAPAGDLLAVGRPGGGEHLVPFVREIVPTVDPAAGRIVVDPPPGLLD 178
>gi|148979278|ref|ZP_01815432.1| 16S rRNA-processing protein [Vibrionales bacterium SWAT-3]
gi|145961926|gb|EDK27217.1| 16S rRNA-processing protein [Vibrionales bacterium SWAT-3]
Length = 184
Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K D+ ++M G T+G+ G + + SY +N + Y + E ++ R
Sbjct: 9 MSKQDEKIVMGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYVNQKGKWVEFKVESWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK + G + A L + ++ EL E+EF+ +L M+ +G
Sbjct: 69 NKGMVCKLEGFEVREDAHVLTNFEIAIDPASLP--ELSEEEFYWRELFGMQVVTTKGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L IK +K L+P+ + V +V+ + +I +D
Sbjct: 127 GVVTDMLETGSNDVLVIKANLKDAFGQKERLVPYLEEQVVKKVDREAQRIEVDWDPG 183
>gi|260574844|ref|ZP_05842846.1| 16S rRNA processing protein RimM [Rhodobacter sp. SW2]
gi|259022849|gb|EEW26143.1| 16S rRNA processing protein RimM [Rhodobacter sp. SW2]
Length = 167
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFI 61
+ + + I + G+ GEV + S+ ++P + Y + R+ +
Sbjct: 1 MTDRICVGAIAGSFGVKGEVRLKSFCSDPEAIAGYGPLFTEDGTRQFSVKLTRPVAGGLG 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG+ A LR LY + +L +DEF++ DL ME D G G+V
Sbjct: 61 ARLSGVATKEEADALRGTSLYVDKTRLP--KLPDDEFYHADLIGMEVRDTGGVLLGRVQA 118
Query: 122 VYNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V+N GAG +LEI K L+PFT V V+L +I++D + L+
Sbjct: 119 VHNHGAGDLLEIAGAGLKEPILLPFTLAVVPTVDLVAGRIVVD-LPEVLD 167
>gi|223044254|ref|ZP_03614291.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
gi|222442404|gb|EEE48512.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
Length = 167
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S ++ + V ++N++ E + +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRFQPGENLIVKHNNEDIEYTVSSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ L+ LY +R D +D EL+E EF+ +D+ FD G+V +
Sbjct: 63 KFEGINNINDIEHLKGDYLYQER-DHEDIELDEHEFYYSDIIGCTVFDDTDTPIGRVINI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ + V +++++ I I P+ L+
Sbjct: 122 FETGANDVWVVK--GDKEYLIPYIEDVVKDIDVEGRSIKITPMKGLLD 167
>gi|294631646|ref|ZP_06710206.1| 16S rRNA processing protein RimM [Streptomyces sp. e14]
gi|292834979|gb|EFF93328.1| 16S rRNA processing protein RimM [Streptomyces sp. e14]
Length = 202
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIATF 64
++A IG HG+ GEV ++ + P L + + D L I + R + F
Sbjct: 2 VVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPASTGPLTIETGRVHSGRLLLRF 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + +A LR+ L A+ + E E+ E+++ L +++ G G++ + +
Sbjct: 62 EGVGDRTAAEALRNTLLIAEVDPEELPEDED-EYYDHQLIDLDVVTEDGTEVGRITEISH 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCP-- 182
+ + ++ +IPF + V E++L+E + +I P +++ D
Sbjct: 121 LPSQDLFIVERPDGSEVMIPFVQEIVTEIDLEEQRAVITPPPGLIDDRAEIASARDAGQE 180
Query: 183 LDSAGKKS 190
AG++S
Sbjct: 181 AHEAGRES 188
>gi|228475074|ref|ZP_04059802.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
gi|228271059|gb|EEK12447.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
Length = 166
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVL--YSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GE+ + S + + ++ + ++ E+ I +
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDTRFQPGEVLIVNHHHNEIEMTITSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI+NI+ + + L+ +R D +D EL E+EF+ +D+ F+ G+V +
Sbjct: 63 KFEGINNINDIEQYKGDYLFQER-DHEDIELNENEFYYSDIIGCTVFNND-TPIGRVINI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ V EV+++ I I P+ L
Sbjct: 121 FETGANDVWVVK--GDKEYLIPYIADVVKEVDVEHKTICITPMEGLLE 166
>gi|256390712|ref|YP_003112276.1| 16S rRNA-processing protein RimM [Catenulispora acidiphila DSM
44928]
gi|256356938|gb|ACU70435.1| 16S rRNA processing protein RimM [Catenulispora acidiphila DSM
44928]
Length = 187
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 5/172 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HG+ G+ ++ ++P R + + L + M + +
Sbjct: 17 LVVGRIGRAHGIRGQATVEVRTDDPELRFAPGSRLLTEPAERGPLVVTDMRFHSGILLLA 76
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++ LR+ L + + E E EF++ L + G G++ +
Sbjct: 77 FEGVADRNAVEALRNTILVVEADPDETPEDPE-EFYDHQLVGLPVELADGTVLGEIADLL 135
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ +L +K LIPF K V V++ +I++DP A L+ +++
Sbjct: 136 HLPGQDVLAVKRPDRPEVLIPFIKQFVPVVDVANKRIVVDPPAGLLDLDSVE 187
>gi|294139728|ref|YP_003555706.1| 16S rRNA processing protein RimM [Shewanella violacea DSS12]
gi|293326197|dbj|BAJ00928.1| 16S rRNA processing protein RimM [Shewanella violacea DSS12]
Length = 177
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ +
Sbjct: 2 MSSKQEPVVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQ 61
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A+ G++ A L + ++ Q + L EDEF+ DL E + +G
Sbjct: 62 GKAVVASLEGVETRDQAQMLTNCEIAVTLQQMET--LPEDEFYWRDLIGCEVVNTKGYNM 119
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + ++EVNL E +I +D
Sbjct: 120 GKVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLTEKQITVD 172
>gi|302386487|ref|YP_003822309.1| 16S rRNA processing protein RimM [Clostridium saccharolyticum WM1]
gi|302197115|gb|ADL04686.1| 16S rRNA processing protein RimM [Clostridium saccharolyticum WM1]
Length = 169
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ L+ + I +THG+ GEV + ++ N + REL I +
Sbjct: 1 MENLLRVGVISSTHGVRGEVKVYPTTDDVNRFNELKKVILDAGQERRELEIQGVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G D+I+ + + L R EL DE F DL + +G+ G +
Sbjct: 61 VILKFKGYDSINDIEKYKGKDLLITRDQ--AVELGPDENFIVDLIGLRVVTEEGEELGIL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + E+K K L+P K V V+L E + + + L+
Sbjct: 119 TDVIKTGANDVYEVKTAEGKEVLLPAIKECVRNVDLTEGLVTVHIMDGLLD 169
>gi|212639587|ref|YP_002316107.1| 16S rRNA-processing protein RimM [Anoxybacillus flavithermus WK1]
gi|212561067|gb|ACJ34122.1| RimM protein, required for 16S rRNA processing [Anoxybacillus
flavithermus WK1]
Length = 174
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 8/172 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNR-ELRILKMYRKNKR 59
K + I THG+ GEV + S + + + Y+ N E+++
Sbjct: 5 KWFHVGKIVNTHGIRGEVRVISRTDFAEERYKIGNVLYIFMENKPPVEVKVASHRVHKSF 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF G DNI+ + + + L E E++ ++ G+ G++
Sbjct: 65 DLLTFEGYDNINLVEPFKGAIIKIPETQL--QPLNEGEYYFHEIIGCTVVTEDGEPIGEI 122
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + +K LIP+ V +V+++ I I + L+
Sbjct: 123 KEILTPGANDVWVVKRKKGGDVLIPYIDDVVKQVDVENKTITIHVMEGLLDE 174
>gi|167623032|ref|YP_001673326.1| 16S rRNA-processing protein RimM [Shewanella halifaxensis HAW-EB4]
gi|189040853|sp|B0TJ76|RIMM_SHEHH RecName: Full=Ribosome maturation factor rimM
gi|167353054|gb|ABZ75667.1| 16S rRNA processing protein RimM [Shewanella halifaxensis HAW-EB4]
Length = 176
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++ G+ G + I +Y ++ + Y + + RE+++ + +
Sbjct: 1 MSSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ + +D L EDEF+ DL E + +G
Sbjct: 61 GKAVVACLEGVTTRDEAQALTNCEIAVPAEQMQD--LPEDEFYWRDLIGCEVINTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K + +IPF + +V+L +IL+D
Sbjct: 119 GTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVD 171
>gi|256822054|ref|YP_003146017.1| 16S rRNA processing protein RimM [Kangiella koreensis DSM 16069]
gi|256795593|gb|ACV26249.1| 16S rRNA processing protein RimM [Kangiella koreensis DSM 16069]
Length = 173
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + K +++ + G+ G V + SY + ++ Y + +++ I+ +
Sbjct: 1 MSQAFKPLIVGKLNGASGIKGWVKVFSYTDPKENILNYSPWYLKLDGQWQQVLIINGREQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G ++ ++A R +++ +LEE E++ DL + + G
Sbjct: 61 GKTVVAQLEGCNDRNTAESYRGVEIAIDESQLP--QLEEGEYYWRDLVGLTVVNVAGDEM 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFA-VLEVNLQENKILID 163
G V + GA +L +K ++ LIP+ V++V+L+ +I +D
Sbjct: 119 GTVEKMMETGANDVLVVKTASKEELLIPYVPEYSVIKVDLESKQITVD 166
>gi|315658472|ref|ZP_07911344.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
gi|315496801|gb|EFU85124.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
Length = 173
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + + NDN EL + +
Sbjct: 10 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEVLTLKHNNDNVELTVTSYRIHKGFHML 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G DNI+ + LY +R D + EL E EF+ +D+ F+ + G+V +
Sbjct: 70 KFEGFDNINDVESFKGDYLYQER-DHEGIELAEHEFYYSDIIGCTVFNGE-IPIGRVINI 127
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + +K +K ++IP+ V +V+++ I+I P+ L+
Sbjct: 128 IETGANDVWVVK--GDKEYMIPYIADVVKDVDIENKMIMITPLEGLLD 173
>gi|160938808|ref|ZP_02086159.1| hypothetical protein CLOBOL_03702 [Clostridium bolteae ATCC
BAA-613]
gi|158437771|gb|EDP15531.1| hypothetical protein CLOBOL_03702 [Clostridium bolteae ATCC
BAA-613]
Length = 170
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
++ ++ + I + HG+ GEV + ++ L +L + + I +
Sbjct: 1 MENMLRVGVITSAHGIKGEVKVFPTTDDAKRFKELKEVILDTGKEHIPMEIEHVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + + L R D LE DE+F TDL + QG G +
Sbjct: 61 VILKFRGYDNINEIEKYKSRDLLITRDQAVD--LEPDEYFITDLIGLTVVSDQGAELGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + + K ++P +L V+L++ ++ + + ++
Sbjct: 119 KDVLETGANDVYVVAMKDGKELMLPAIGDCILNVDLEQGRMEVHVLEGLMD 169
>gi|261250234|ref|ZP_05942810.1| 16S rRNA processing protein RimM [Vibrio orientalis CIP 102891]
gi|260939350|gb|EEX95336.1| 16S rRNA processing protein RimM [Vibrio orientalis CIP 102891]
Length = 182
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D +++ G ++G+ G + + SY +N + Y + E + R NK
Sbjct: 11 DNKIVVGKFGASYGIRGWLKVLSYTDNAESIFDYAPWWINQGGQWVEYKAESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D A L + ++ EL DEF+ DL M+ +G G V
Sbjct: 71 VVKLEGLDVREDAQLLTNFEILIDPAVLP--ELPSDEFYWRDLIGMQVVTDKGYDLGTVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L IK +K LIPF + + ++ + +I +D
Sbjct: 129 DMLETGSNDVLVIKANLKDAFGQKERLIPFLEEQVIKNIDREAQRIEVDWDPG 181
>gi|310814611|ref|YP_003962575.1| putative 16S rRNA processing protein [Ketogulonicigenium vulgare
Y25]
gi|308753346|gb|ADO41275.1| putative 16S rRNA processing protein [Ketogulonicigenium vulgare
Y25]
Length = 168
Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRK-NKRFI 61
+ +++ I + G+ G++ + S+ P D+ Y LY++D R R++ + + N +
Sbjct: 1 MSDRIVLGQIAGSFGVRGDLRLKSFCAIPEDIAIYTPLYTDDGRVFRVVVITGQTNGALV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI + A LR L A R + L +DEF+++DL ++E D G G+V
Sbjct: 61 ARIEGISSKEEADALRGQNLSADRDRLPN--LPDDEFYHSDLIDLEVLDTGGAILGRVKT 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V N GAG ILE++ T + T L+PFT V V+L+ +I+ DP
Sbjct: 119 VLNHGAGDILEVQLTGKPATALLPFTLAIVPTVDLKAGRIIADPPEGLFE 168
>gi|229918607|ref|YP_002887253.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
gi|259585644|sp|C4L602|RIMM_EXISA RecName: Full=Ribosome maturation factor rimM
gi|229470036|gb|ACQ71808.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
Length = 172
Score = 178 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + I THGL GEV I + + P + + ++ +E+ I +
Sbjct: 2 DWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFH 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G DNI+ + + LKLY + D L+E EF+ ++ E G+ G V
Sbjct: 62 LVTFKGFDNINLIEKYKGLKLYVHAEHVHD--LDEHEFYYHEIIGCEAV-VDGEVIGVVD 118
Query: 121 GVYNF-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ GA + IK + LIP+ + V E+++ +++I PI +++
Sbjct: 119 DIFETNGANDVWVIKRPGKSDALIPYIESVVQEIDVDAKRVVITPIPGMIDDE 171
>gi|291550680|emb|CBL26942.1| 16S rRNA processing protein RimM [Ruminococcus torques L2-14]
Length = 169
Score = 178 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++ + + I +THGL GEV + ++ L VL + + +L I + +
Sbjct: 1 MEQFLQVGVISSTHGLRGEVKVFPTTDDAARFQTLKNVVLDTGREKLDLEIQSVRFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
I F GIDNI+ + + L+ R++ ELEEDE++ DL ME + + +G
Sbjct: 61 VIVKFKGIDNINDIEKYKGKSLFVTREN--AVELEEDEYYIGDLIGMEVYTDDSEERFGV 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ V GA + I + L+P +L+++++ K+ + + L
Sbjct: 119 LKDVMETGANEVYIITSENHGEVLLPAIHECILDIDVEAKKMKVHLMEGLL 169
>gi|238916981|ref|YP_002930498.1| 16S rRNA processing protein RimM [Eubacterium eligens ATCC 27750]
gi|238872341|gb|ACR72051.1| 16S rRNA processing protein RimM [Eubacterium eligens ATCC 27750]
Length = 172
Score = 178 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE----LRILKMYRKNKR 59
++ ++ + I +THG+ GEV + ++P+ + D + + + + +
Sbjct: 1 MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F D+I+ + L R+D +LE E+F DL ++ +GK+ G +
Sbjct: 61 VILKFKEFDDINDIEKYTKCDLLVSRED--AVKLEPGEYFICDLIGLDVITDEGKHLGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA ++ E++ +++LIP +L+ +L + I + + L+
Sbjct: 119 KDVLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTITVHILPGLLD 169
>gi|240146495|ref|ZP_04745096.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|257201351|gb|EEU99635.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|291535149|emb|CBL08261.1| 16S rRNA processing protein RimM [Roseburia intestinalis M50/1]
Length = 194
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 6/179 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE---LRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ + + + +E L I +
Sbjct: 18 MENLLQVGVITTTHGVRGEVKVFPTTDDAARFKKLKQVILDTGKEHLALEIAGVKFFKNM 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ R LY R++ +L+++E+F DL ++ +G+ G++
Sbjct: 78 VILKFKGYDNINDVEMFRKKSLYVTREN--AVKLKKNEYFIADLIGLKVISDEGEDLGEL 135
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V GA + I L+P K V +V+++ + + + + + +
Sbjct: 136 TDVLQTGANDVYVISKEGADDILLPAIKDCVKQVDIEGGTMQVHLLDGLRDLNSRREEA 194
>gi|315126109|ref|YP_004068112.1| 16S rRNA processing protein [Pseudoalteromonas sp. SM9913]
gi|315014623|gb|ADT67961.1| 16S rRNA processing protein [Pseudoalteromonas sp. SM9913]
Length = 178
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S+ ++P + + + + L ++ R NK FIA
Sbjct: 10 IVVGKLGAPYGIKGWLKVHSFTDDPQGIFDFSPWLIGQQGKWQSLEVVDWRRHNKGFIAK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ +++ A ++++ EL + EF+ DL M +G G V +
Sbjct: 70 FAQVNDRDQAMAYTNVEISVDSAQLP--ELPQGEFYWRDLIGMSVVTDKGYNLGIVDDLM 127
Query: 124 NFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILID 163
G+ +L +K + LIPF T + EV +I +D
Sbjct: 128 ETGSNDVLVVKANSKDAFGQAERLIPFLTDSVIQEVKYDAKEITVD 173
>gi|197103581|ref|YP_002128958.1| 16S rRNA processing protein RimM [Phenylobacterium zucineum HLK1]
gi|196477001|gb|ACG76529.1| 16S rRNA processing protein RimM [Phenylobacterium zucineum HLK1]
Length = 167
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE-LRILKMYRKNKRFIA 62
D L+L+ + G+ GEV + SY P L Y L D R L +L +
Sbjct: 3 DSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRDLKREDGRPALTLLSGRPAKGGLVV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
++ A LR L LY R E EEDEF+ TDL + QG+ G+V V
Sbjct: 63 RAQEVETREQAEALRGLNLYIPRDILP--EPEEDEFYVTDLIGLAVETPQGEPLGRVKNV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+FGAG +LEI+ + +PFTK AV EV L E K++
Sbjct: 121 QDFGAGDLLEIEPPEGAAWYLPFTKEAVPEVRLAEGKVVAVRPEE 165
>gi|282861373|ref|ZP_06270438.1| 16S rRNA processing protein RimM [Streptomyces sp. ACTE]
gi|282564031|gb|EFB69568.1| 16S rRNA processing protein RimM [Streptomyces sp. ACTE]
Length = 207
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 82/187 (43%), Gaps = 5/187 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPAEKGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + + A LR++ L A+ + E +E+EF++ L +++ G G++ +
Sbjct: 63 FENVRDRTGAEALRNILLIAEVDPAQLPE-DEEEFYDHQLIDLDVVLADGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ +IPF + V E++L+E + +I P ++ +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVITPPPGLIDESEAVVASARDAE 181
Query: 184 DSAGKKS 190
+ G+ +
Sbjct: 182 HAEGQDA 188
>gi|238063307|ref|ZP_04608016.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
gi|237885118|gb|EEP73946.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
Length = 185
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 21/183 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR-------------------E 47
+++ IG HG+ GEV ++ + P + + + E
Sbjct: 3 LIVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATEPGAVPPANPASGPGVPFRVPAE 62
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
L + R + F GI A LR L D E E EF + L +
Sbjct: 63 LTVESARWHQGRLLVVFDGILERDVAEALRGTLLGVDSADVAPPEDPE-EFHDHQLVGLA 121
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G++ G+V + + A +L ++ +T LIPF K V EV+L +I++DP +
Sbjct: 122 VVTPAGEHLGEVVKIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRIVVDPPSG 181
Query: 168 GLN 170
L+
Sbjct: 182 LLD 184
>gi|163733915|ref|ZP_02141357.1| 16S rRNA processing protein RimM [Roseobacter litoralis Och 149]
gi|161393026|gb|EDQ17353.1| 16S rRNA processing protein RimM [Roseobacter litoralis Och 149]
Length = 173
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
D+ + + I +G+ GE+ I S+ D+ Y + + R + + F+A
Sbjct: 8 DEKICVGAIAGAYGVRGELRIKSFCATAEDIETYAPLTSEDGQRHFHLALVRPIKGGFVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + A L+ ++L+A R L +DE++ TDL ++ D G+ G V V
Sbjct: 68 RIAEVTTKEEADALKGVQLFALRDQLPS--LPDDEYYYTDLIGLQVLDTGGEILGSVKTV 125
Query: 123 YNFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GAG ILE++ L+PFT + V+L+ KI+ DP L
Sbjct: 126 ADHGAGDILEVQRVGSSETVLLPFTLAVIPTVDLRAGKIIADPPEGAL 173
>gi|169630308|ref|YP_001703957.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus ATCC
19977]
gi|238688780|sp|B1MDI4|RIMM_MYCA9 RecName: Full=Ribosome maturation factor rimM
gi|169242275|emb|CAM63303.1| Probable 16S rRNA processing protein RimM [Mycobacterium abscessus]
Length = 173
Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNKRF 60
+++ I HG+ GE+ ++ ++P + + +R + + + R
Sbjct: 3 LVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+ + +A LR D E + DEF++ LE + G G V
Sbjct: 63 LIRFAGVSDRDAADALRGTLFMVDTTDLPPIE-DPDEFYDHQLEGLAVRTLDGAAVGTVS 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G +L ++ + + L+PF V ++L + I IDP L+
Sbjct: 122 EVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLD 171
>gi|114771309|ref|ZP_01448729.1| 16S rRNA processing protein RimM [alpha proteobacterium HTCC2255]
gi|114548234|gb|EAU51121.1| 16S rRNA processing protein RimM [alpha proteobacterium HTCC2255]
Length = 189
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 6/192 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNK 58
M ++ V + + G++GE+ + S+ ++P + Y +++ + ++ +
Sbjct: 1 MTIPER-VCVGAVVGAFGIHGEIRVKSFCSDPESIAEYDQLTDETGKKVFKLKIINPIKG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F A SG+ A EL+ + LY R + + L++DEF+ +DL +E FD G G+
Sbjct: 60 GFSARISGVKYRDQAEELKGIALYVCRSEMPN--LDDDEFYYSDLINLEVFDTGGIKIGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTF-LIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V V + GAG LEIK +K L+PFTK +V ++L+ +I+IDP N + P
Sbjct: 118 VISVNDHGAGDFLEIKAYGQKNLALLPFTKKSVPTIDLKLGRIIIDPPHGVFENNEPEEP 177
Query: 178 QYDCPLDSAGKK 189
G +
Sbjct: 178 PSPRNHLELGDE 189
>gi|260775498|ref|ZP_05884395.1| 16S rRNA processing protein RimM [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608679|gb|EEX34844.1| 16S rRNA processing protein RimM [Vibrio coralliilyticus ATCC
BAA-450]
Length = 182
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
+ +++ G T+G+ G + + SY +N + Y + + E ++ R NK
Sbjct: 11 SEKIVVGKFGATYGIRGWLKVFSYTDNTESIFDYAPWFINQKGEWVERKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D A L + ++ EL EDEF+ DL M+ +G G V
Sbjct: 71 VVKLEGLDVREEAQLLTNFEIAIDPAVLP--ELPEDEFYWRDLIGMQVVTDKGYDLGTVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + V++ ++ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKLIDREAQRIEVDWDPG 181
>gi|107103259|ref|ZP_01367177.1| hypothetical protein PaerPA_01004328 [Pseudomonas aeruginosa PACS2]
gi|116051742|ref|YP_789419.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889978|ref|YP_002438842.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa LESB58]
gi|254236653|ref|ZP_04929976.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|254242435|ref|ZP_04935757.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|296387747|ref|ZP_06877222.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAb1]
gi|313109151|ref|ZP_07795122.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
gi|122260885|sp|Q02RL7|RIMM_PSEAB RecName: Full=Ribosome maturation factor rimM
gi|226734091|sp|B7UYK7|RIMM_PSEA8 RecName: Full=Ribosome maturation factor rimM
gi|115586963|gb|ABJ12978.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168584|gb|EAZ54095.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|126195813|gb|EAZ59876.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|218770201|emb|CAW25963.1| 16S rRNA processing protein [Pseudomonas aeruginosa LESB58]
gi|310881624|gb|EFQ40218.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
Length = 175
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ G+ G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELPS--LEEGEYYWHQLEGLKVIDQGGQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|254449413|ref|ZP_05062850.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 238]
gi|198263819|gb|EDY88089.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 238]
Length = 183
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 8/188 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNKR 59
M D +++ T+ + G+NG+V + S+ +P L Y + D E+ + + + K
Sbjct: 1 MPMSDDRIVVGTLAGSFGVNGDVRLKSFCADPEALADYTPLTRADGSEITTIVIKGQTKG 60
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA GI A LR ++LYA+R L +DE+++ DL + T+D G G+
Sbjct: 61 SLIARVDGITTKEEADGLRGMELYARRDQLPS--LPDDEYYHADLVGLMTYDTGGAKLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V V GA +LEI + +K T L+PFTK V V+L +I++DP + +
Sbjct: 119 VKAVQTNGADDLLEIISPSDKDTVLVPFTKVIVPTVDLASGRIVLDPPRGLFAD---EAD 175
Query: 178 QYDCPLDS 185
D P
Sbjct: 176 TQDTPAAD 183
>gi|297584016|ref|YP_003699796.1| 16S rRNA processing protein RimM [Bacillus selenitireducens MLS10]
gi|297142473|gb|ADH99230.1| 16S rRNA processing protein RimM [Bacillus selenitireducens MLS10]
Length = 174
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRK 56
+ K + + I THG++GEV + S + + L Y + + ++ +
Sbjct: 1 MSKWLNVGKIVNTHGIHGEVRVISRTDFKEERYAKGRELFLYNPEKDHRTSVTVVSWRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + TF G N++ RD L D D+ +EEDEF+ ++ + D QG
Sbjct: 61 KQFDLLTFEGYTNVNDVEGFRDHLLQVDGDDL-DDPMEEDEFYYHEIIGLSVVDEQGIEI 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+V + + GA + ++ +K LIP+ VL V+L++ + + ++
Sbjct: 120 GRVKEILSPGANDVWVVQRQGKKDALIPYIDDVVLSVDLEDGVVHVRIPEGLIDE 174
>gi|119774027|ref|YP_926767.1| 16S rRNA-processing protein RimM [Shewanella amazonensis SB2B]
gi|171704647|sp|A1S3Z1|RIMM_SHEAM RecName: Full=Ribosome maturation factor rimM
gi|119766527|gb|ABL99097.1| 16S rRNA processing protein RimM [Shewanella amazonensis SB2B]
Length = 176
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ IG+T+G+ G + I +Y ++ + Y + + RE+++ +
Sbjct: 1 MSSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ N A L + ++ + EL EDEF+ DL E + +G
Sbjct: 61 GKAVVAELEGVSNREQAQMLTNCEIGILAEQMP--ELPEDEFYWRDLIGCEVLNTKGYNL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IP+ VLEV L E +I++D
Sbjct: 119 GKVDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLEVKLSEKQIIVD 171
>gi|320008293|gb|ADW03143.1| 16S rRNA processing protein RimM [Streptomyces flavogriseus ATCC
33331]
Length = 210
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAGTGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A+ + + E EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRSAAEALRNTLLIAEVDPAELPDDPE-EFYDHQLMDLDVVLGDGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK------NP 177
+ + + ++ +IPF + V E++L+E +I+I P ++ + +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRIVIAPPPGLIDESEAEVASARDAE 181
Query: 178 QYDCPLDSAG 187
+ D AG
Sbjct: 182 GAEEDADPAG 191
>gi|257870307|ref|ZP_05649960.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
gi|257804471|gb|EEV33293.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
Length = 174
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRI-LKMYRKNK 58
+ + + + I THG+ GEV + S + P + R L+ + L + + +RK+K
Sbjct: 1 MTEFLNVGKIVNTHGIRGEVRVISQTDFPEERYRKGQRLTLFRENKAPLELTVAGHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F + TF G I+ LRD L + + EL E+E++ ++ + D Q + G
Sbjct: 61 NFDLLTFEGYPTINDVEPLRDGILKVSKDEL--SELTENEYYYHEIIGLTVIDEQARELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K LIP+ + V +++L + ++ I+ L++
Sbjct: 119 KIKEILSPGANDVWVVQRKGKKDALIPYIESVVKQIDLDKGEVHIEIPEGLLDDE 173
>gi|310641517|ref|YP_003946275.1| ribosome maturation factor rimm [Paenibacillus polymyxa SC2]
gi|309246467|gb|ADO56034.1| Ribosome maturation factor rimM [Paenibacillus polymyxa SC2]
Length = 171
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRK 56
+ ++ + I THG+ GE+ I + + D ++ D + + + +
Sbjct: 1 MQQMFNVGKIVNTHGIRGELKILTTTDFLEDRFAKGSELLIVPADGKAPIPVTVETARFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F NI+ + + L + ELEE+EF+ ++ ME G
Sbjct: 61 KNMVVVKFKEYHNINDVEKYKGTLLKVSAERL--GELEENEFYFHEVVGMEVVTEDGTKL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + GA + ++ K L+P+ + +L+VN++E ++ + + L
Sbjct: 119 GEVKEILTPGANDVWVVQMPKGKELLLPYIEDVILDVNVREKRVTVRLMEGLL 171
>gi|157692281|ref|YP_001486743.1| 16S rRNA-processing protein RimM [Bacillus pumilus SAFR-032]
gi|166985924|sp|A8FD66|RIMM_BACP2 RecName: Full=Ribosome maturation factor rimM
gi|157681039|gb|ABV62183.1| 16S rRNA processing protein [Bacillus pumilus SAFR-032]
Length = 174
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNK 58
+ + + I THG+ GEV + S + P + + Y+ L++ + +R++K
Sbjct: 3 QEWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQGQGEPLKVTVASHRQHK 62
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F + TF I +++ A L++ L +++ L+E EF+ + E +D + + G
Sbjct: 63 QFDLLTFEEISSLNEAELLKESILKVEKEHL--GSLDEGEFYFHQIIGCEVYDEENQLVG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
Q+ + GA + + +K LIP+ V ++++ I I+ + ++
Sbjct: 121 QIKEILTPGANDVWVVGRKGKKDALIPYIPSVVKKIDISSKTIHIEVMEGLIDE 174
>gi|325263006|ref|ZP_08129742.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
gi|324032100|gb|EGB93379.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
Length = 168
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++ + + I +THG+ GEV + ++ L + +L + + I + +
Sbjct: 1 MEQFLQVGVISSTHGIRGEVKVFPTTDDAARFKSLKQVILDTGKEHIPMEIQGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + +L R+D LEEDE++ DL M+ + +G+ +G +
Sbjct: 61 VIVKFKGIDNINDVEKYKGKRLLVDRED--AVSLEEDEYYIADLIGMKVYTEEGE-FGML 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +++ LIP +L+VN++E + + + +
Sbjct: 118 KDVIETGANEVYVVESPDHGEVLIPAIHDCILDVNVEEQTMKVHLLEGLI 167
>gi|157374299|ref|YP_001472899.1| 16S rRNA-processing protein [Shewanella sediminis HAW-EB3]
gi|189040855|sp|A8FSE8|RIMM_SHESH RecName: Full=Ribosome maturation factor rimM
gi|157316673|gb|ABV35771.1| 16S rRNA processing protein RimM [Shewanella sediminis HAW-EB3]
Length = 176
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++HG+ G + I +Y ++ + Y + + RE+++L+ +
Sbjct: 1 MSSKQEPVVLGKLGSSHGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVLQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G++ A L + ++ + + L EDEF+ DL E + +G
Sbjct: 61 GKAVVACLEGVETREHAQMLTNCEIAVTPEQM--DTLPEDEFYWRDLIGCEVMNTKGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L +K + +IPF + ++EVNL E +I +D
Sbjct: 119 GKVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTEQFIIEVNLTEKQITVD 171
>gi|194014273|ref|ZP_03052890.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
gi|194013299|gb|EDW22864.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
Length = 174
Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNK 58
+ + + I THG+ GEV + S + P + + Y+ L++ + +R++K
Sbjct: 3 QEWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQGQGEPLKVTVASHRQHK 62
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F + TF I +++ A L++ L +++ L+E EF+ + E +D + + G
Sbjct: 63 QFDLLTFEEISSLNEAELLKESILKVEKEHL--GSLDEGEFYFHQIIGCEVYDEEDQLVG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
Q+ + GA + + +K LIP+ V ++++ I I+ + ++
Sbjct: 121 QIKEILTPGANDVWVVGRKGKKDALIPYIPSVVKKIDIASKTIHIEVMEGLIDE 174
>gi|261210131|ref|ZP_05924429.1| 16S rRNA processing protein RimM [Vibrio sp. RC341]
gi|260840896|gb|EEX67438.1| 16S rRNA processing protein RimM [Vibrio sp. RC341]
Length = 176
Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 1 MGKQNERLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWFIDQKGEWVEHKVEGWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 61 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTSSGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L +K +K LIPF + + V+ Q +I +D A
Sbjct: 119 GVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPA 175
>gi|226325146|ref|ZP_03800664.1| hypothetical protein COPCOM_02938 [Coprococcus comes ATCC 27758]
gi|225206494|gb|EEG88848.1| hypothetical protein COPCOM_02938 [Coprococcus comes ATCC 27758]
Length = 170
Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKN 57
++ + + + I +THG+ GEV + ++P L VL + + L I +
Sbjct: 1 MQQNDYLQVGVITSTHGIKGEVKVFPTTDDPNRFRALKDVVLDTGKEQIPLEIEGVKFFK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ I F GIDNI+ + R + L R++ ELEEDE++ D+ M+ + G+ +G
Sbjct: 61 QYVILKFKGIDNINDIEKYRKMPLLVSREN--AVELEEDEYYMADIIGMDVYTEDGEKFG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + + L+P +L+V+ + K+ + + +
Sbjct: 119 VLEDIMETGANDVYVVSTEAHTEVLLPAIHDCILDVDTENRKMTVHLMDGLI 170
>gi|307330036|ref|ZP_07609187.1| 16S rRNA processing protein RimM [Streptomyces violaceusniger Tu
4113]
gi|306884297|gb|EFN15332.1| 16S rRNA processing protein RimM [Streptomyces violaceusniger Tu
4113]
Length = 215
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTEPASAGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR++ L A+ + E E EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRSAAEALRNILLIAEVDPEELPEDPE-EFYDHQLIDIDVVTVDGTEVGRISEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ +L +K +IPF V E++L+ + +IDP L+ +
Sbjct: 122 HLPYQDLLIVKRPDGGEVMIPFVSEFVPEIDLEAQRAVIDPPPGLLDEAEAEIAGSRKDE 181
Query: 184 DSAGKK 189
+ G+K
Sbjct: 182 TAGGRK 187
>gi|217964055|ref|YP_002349733.1| 16S rRNA processing protein RimM [Listeria monocytogenes HCC23]
gi|254797753|sp|B8DDW0|RIMM_LISMH RecName: Full=Ribosome maturation factor rimM
gi|217333325|gb|ACK39119.1| 16S rRNA processing protein RimM [Listeria monocytogenes HCC23]
Length = 172
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|225374448|ref|ZP_03751669.1| hypothetical protein ROSEINA2194_00063 [Roseburia inulinivorans DSM
16841]
gi|225213686|gb|EEG96040.1| hypothetical protein ROSEINA2194_00063 [Roseburia inulinivorans DSM
16841]
Length = 173
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNREL---RILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++P + + + +EL + +
Sbjct: 1 MEDLLQVGVITTTHGVRGEVKVFPTTDDPARFKKLKNVVLDTGKELVDLEVAGVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + R LY R++ +L+++E+F DL ++ +G+ G++
Sbjct: 61 VIVKFKGIDNINDVEKYRKKSLYVTREN--AVKLKKNEYFIADLIGLQAESDEGEDLGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + L+P K V EV+L+ KI++ +
Sbjct: 119 SDVLQTGANDVYVLSKEGTDDILLPAIKECVKEVDLENGKIIVHLLPGL 167
>gi|254509201|ref|ZP_05121298.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus 16]
gi|219547859|gb|EED24887.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus 16]
Length = 182
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
+ +++ +G ++G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 EDKIVVGKLGASYGIRGWLKVFSYTDNAESMFDYTPWFINQGGKWVEYKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D A L + ++ EL DEF+ DL M +G G V
Sbjct: 71 VVKLEGLDVREDAQLLTNFEISIDPAVLP--ELPSDEFYWRDLIGMHVVTDKGYDLGTVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + + ++ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKHIDREAQRIEVDWDPG 181
>gi|73662837|ref|YP_301618.1| 16S rRNA-processing protein RimM [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|109893055|sp|Q49X25|RIMM_STAS1 RecName: Full=Ribosome maturation factor rimM
gi|72495352|dbj|BAE18673.1| RimM protein required for 16S rRNA processing [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 168
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRE---LRILKMYRKNKRFI 61
V + I THG+ GE+ + S + V+ N+E I +
Sbjct: 3 VEIGKIVNTHGIKGEIKVKSNSDFTETRFQPGELVIIERKNKEPLEFTIASYRMHKGLHM 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
TF GI+NI+ L+ + +R D ++ EL E EF+ +D+ FD G+V
Sbjct: 63 LTFEGINNINDIEYLKGETIMQER-DHEEIELGEHEFYYSDIIGCTVFDDDDTPIGRVTE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ GA + +K +K +LIP+ V +++++ +I I P+ L+
Sbjct: 122 IFETGANDVWVVK--GDKEYLIPYIADVVKDIDVEGRRIQITPMEGLLD 168
>gi|319649587|ref|ZP_08003743.1| 16S rRNA processing protein RimM [Bacillus sp. 2_A_57_CT2]
gi|317398749|gb|EFV79431.1| 16S rRNA processing protein RimM [Bacillus sp. 2_A_57_CT2]
Length = 173
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLY---SNDNRELRILKMYR 55
+ K + I THG+ GE + S + + + Y+ D EL +
Sbjct: 1 MQKWFNVGKIVNTHGIKGEARVISKTDFAEERYKPGNKLYLFMPDTKGDPIELTVKTHRT 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ TF G +NI+ +++ L D LEEDEF+ ++ G
Sbjct: 61 HKTFDLLTFEGYENINGIEKMKGGILKISEDQLGD--LEEDEFYYHEIIGCTVETLDGAE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ + + GA + IK K LIP+ + V EVN+++ + I+ I L
Sbjct: 119 VGKIKEILSPGANDVWVIKAKGGKEILIPYIEDVVKEVNVKDKLVKINAIEGLL 172
>gi|86137215|ref|ZP_01055793.1| 16S rRNA processing protein RimM [Roseobacter sp. MED193]
gi|85826539|gb|EAQ46736.1| 16S rRNA processing protein RimM [Roseobacter sp. MED193]
Length = 171
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIA 62
L+ + I ++G+ GEV + S+ P ++ Y +N++ + + F
Sbjct: 6 SDLICVGAIAGSYGVRGEVRLKSFCAQPEEIETYSPLTNEDGSQSFSLTLGRAVKGGFTG 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
S ++ A L+ ++L+ R L DE+++ DL +E FD G G V V
Sbjct: 66 RISTVETKEQADALKGIRLFTTRDKLPT--LPSDEYYHADLIGVEVFDTGGALLGTVKSV 123
Query: 123 YNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
N GA +LE+ + T +PFT AV V+L++ +I+ DP
Sbjct: 124 QNHGASDLLELTGAGLKGTVFLPFTLAAVPTVDLEQGRIIADPPEGL 170
>gi|152985572|ref|YP_001346759.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PA7]
gi|166226466|sp|A6V124|RIMM_PSEA7 RecName: Full=Ribosome maturation factor rimM
gi|150960730|gb|ABR82755.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa PA7]
Length = 175
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLY-SNDNRELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGETRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ G+ G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELPS--LEEGEYYWYQLEGLKVIDQGGQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|288957358|ref|YP_003447699.1| 16S rRNA processing protein [Azospirillum sp. B510]
gi|288909666|dbj|BAI71155.1| 16S rRNA processing protein [Azospirillum sp. B510]
Length = 192
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFI 61
+ + + +HG+ G V + S+ P D+ Y S++ R + F+
Sbjct: 1 MTVKICVGQFAGSHGVRGLVKLRSFTAEPADIATYGPLSDEAGARRFTLTLQGMVKDNFL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ + A L ++L+ R E +EDEF++ DL + G +G V
Sbjct: 61 AKVDGVTSREQAQALAGVRLHVDRDALPATE-DEDEFYHADLIGLRAELADGSLYGTVKA 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI------AAGLNNTTMK 175
+Y+FGAG +LE++ ++PF+K V V+++ +I++D +++ +
Sbjct: 120 IYDFGAGDVLEVRTAGGPLEMLPFSKACVPVVDVRGGRIVVDLPAVIEAREGSGDDSEDE 179
Query: 176 NPQYDCPLDSAGK 188
+ AG
Sbjct: 180 GGEGGDQSGEAGP 192
>gi|163803445|ref|ZP_02197318.1| 16S rRNA-processing protein [Vibrio sp. AND4]
gi|159172746|gb|EDP57594.1| 16S rRNA-processing protein [Vibrio sp. AND4]
Length = 184
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ ++M G T+G+ G + + SY +N + Y + E ++ R
Sbjct: 9 MSKQNEKIVMGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYVNQKGKWVEYKVDSWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK + G + A L + ++ EL E+EF+ +L M+ +G
Sbjct: 69 NKGMVCKLEGFEVREDAHLLTNFEIAIDPASLP--ELSEEEFYWRELFGMQVVTTKGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V + G+ +L IK +K L+P+ + + +V+ + +I +D
Sbjct: 127 GVVTDMLETGSNDVLVIKANLKDAFGQKERLVPYLEEQVIKKVDREAQRIEVDWDPG 183
>gi|125973285|ref|YP_001037195.1| 16S rRNA processing protein RimM [Clostridium thermocellum ATCC
27405]
gi|256003765|ref|ZP_05428753.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
2360]
gi|281417489|ref|ZP_06248509.1| 16S rRNA processing protein RimM [Clostridium thermocellum JW20]
gi|166226436|sp|A3DDH3|RIMM_CLOTH RecName: Full=Ribosome maturation factor rimM
gi|125713510|gb|ABN52002.1| 16S rRNA processing protein RimM [Clostridium thermocellum ATCC
27405]
gi|255992326|gb|EEU02420.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
2360]
gi|281408891|gb|EFB39149.1| 16S rRNA processing protein RimM [Clostridium thermocellum JW20]
gi|316940483|gb|ADU74517.1| 16S rRNA processing protein RimM [Clostridium thermocellum DSM
1313]
Length = 174
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL------YSNDNRELRILKMYRKN 57
+ + + + I THG+ GEV +NP N+ SN+ + I+ +
Sbjct: 1 MIQYLQVGKIVNTHGIKGEVKAIPLTDNPRRFNKLKWAYVSKEISNEMPKFDIVSVKHHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I FSGID++++A +L++ + R+D +L +D FF DL M FD + K G
Sbjct: 61 NFVILKFSGIDDMNAAEKLKEHFVIIDRKD--AVKLPKDTFFICDLIGMNVFDTEEKKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ V + G+ + +K+ K LIP K V +V ++NK+++D +++
Sbjct: 119 VLTDVLSTGSNDVYVVKSDNNKEILIPALKSVVKKVCFEDNKMVVDLPQGLIDDE 173
>gi|72161068|ref|YP_288725.1| 16S rRNA-processing protein RimM [Thermobifida fusca YX]
gi|109893064|sp|Q47S65|RIMM_THEFY RecName: Full=Ribosome maturation factor rimM
gi|71914800|gb|AAZ54702.1| 16S rRNA processing protein RimM [Thermobifida fusca YX]
Length = 170
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HG+ GEV ++ ++P + D L I R +
Sbjct: 3 LVVGRIGRPHGVKGEVTVEVRTDSPEERFVVGKALETDPADVGPLTITAQRWHKDRLLVR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + + +A +LR + L + + + DEF + +L + G+ G+V V
Sbjct: 63 FEEVPDRTAAEQLRGVFLVVDSAELPPLD-DPDEFHDHELIGLRVETVDGEAVGEVVDVL 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A +L + L+PF + V +V+ +++IDP L
Sbjct: 122 HH-AQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRVVIDPPPGLLE 167
>gi|294815372|ref|ZP_06774015.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
gi|294327971|gb|EFG09614.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
Length = 244
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++ IG HG+ GEV ++ + P L + D L I + R +
Sbjct: 28 LVVGRIGRAHGVKGEVSVEVRTDEPELRLGPGAVLLTDPPARGPLTIETGRVHSGRLLLR 87
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + + A LR+ L A E + DE+++ L +++ G G++ +
Sbjct: 88 FAGVRDRNGAEALRETLLIADVDPEASPEGD-DEYYDHQLIDLDVVTVDGTEVGRITEIS 146
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + + ++ +IPF V ++L+E + +IDP +++
Sbjct: 147 HLPSQDLFIVERPDGTEVMIPFVTEIVTSIDLEEQRAVIDPPPGLIDD 194
>gi|257068183|ref|YP_003154438.1| 16S rRNA processing protein RimM [Brachybacterium faecium DSM 4810]
gi|256559001|gb|ACU84848.1| 16S rRNA processing protein RimM [Brachybacterium faecium DSM 4810]
Length = 194
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 8/195 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYR 55
M LD V++ATIG HGL GEV + + P + + V + R L +
Sbjct: 1 MSTLD--VIVATIGRAHGLRGEVALTLRTDQPEERLQPGTAFEVEVAGQVRALTVQSTRM 58
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ R+ F +D+ A+ LR + L ++ E + D ++ L+ + G+
Sbjct: 59 QQDRWYVRFEEVDDRTGAASLRGIDLVLSLDAEQEAEEDPDAWYPAQLKGLSVRHVDGRE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G V GV ++ A +L ++ + +P + V EV+L++ ++ DP GL + +
Sbjct: 119 LGTVAGVDHYPAQDLLVVRTPDRRRVQLPLVEELVPEVDLEQGVVIADP-PGGLFDALPE 177
Query: 176 NPQYDCPLDSAGKKS 190
+ Q P SA +
Sbjct: 178 DEQGPEPETSAPPRG 192
>gi|237809703|ref|YP_002894143.1| 16S rRNA-processing protein RimM [Tolumonas auensis DSM 9187]
gi|259585653|sp|C4LD26|RIMM_TOLAT RecName: Full=Ribosome maturation factor rimM
gi|237501964|gb|ACQ94557.1| 16S rRNA processing protein RimM [Tolumonas auensis DSM 9187]
Length = 173
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+D +++ +G +G+ G + ++S+ +NP + Y + RE+++ R N
Sbjct: 1 MDSSIVVGRLGAVYGIKGWLKVNSFTDNPESIFDYAPWFIMDKGMWREIQLTGWKRHNNG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ A L + L + +++ DL +G G V
Sbjct: 61 LICKIDGVDSREDAQALTGADIAVLSDQLPA--LPKGDYYWRDLIGCAVVTTKGYQLGTV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L ++ + K LIPF + +++ I +D
Sbjct: 119 SELMETGSNDVLVVQANLNDAFGMKERLIPFIDEQVIKHIDITARLIEVDWDPG 172
>gi|311030152|ref|ZP_07708242.1| 16S rRNA-processing protein RimM [Bacillus sp. m3-13]
Length = 172
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 10/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + + THG+ GEV + S + P + + Y+ ND + + + R +
Sbjct: 1 MSKWFNVGKLVNTHGIKGEVRVVSRTDFPDERYKKGNLLYLFLPNDKEPVEVKVASRRVH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KY 115
K F + TF G N++ + + + ELEE E++ ++ + ++ +
Sbjct: 61 KSFDLLTFEGFHNVNEVEKFKGAIIKVPEDQL--GELEEGEYYFHEIVGCKVILQETMEE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G V V GA + I+ K LIP+ V +V++QE I+I+P+
Sbjct: 119 IGTVKEVLTPGANDVWVIQAKKGKDILIPYIDQVVKKVDVQEKTIIIEPLEGL 171
>gi|197303268|ref|ZP_03168309.1| hypothetical protein RUMLAC_01991 [Ruminococcus lactaris ATCC
29176]
gi|197297694|gb|EDY32253.1| hypothetical protein RUMLAC_01991 [Ruminococcus lactaris ATCC
29176]
Length = 178
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++ + + I +THGL GEV + ++ L +L + + +L I + +
Sbjct: 10 MEQFLQVGVISSTHGLRGEVKVFPTTDDAARFQTLKEVILDTGKEKLDLEIQSVRFFKQF 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQ 118
I F GID+I+ + + L+ R++ ELEEDE++ DL M+ + D + +G
Sbjct: 70 VIVKFKGIDDINDIEKYKGKSLFVAREN--AVELEEDEYYIGDLIGMDVYTDESEERFGV 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ V GA + +++ L+P +LEV+ +E K+ + + +
Sbjct: 128 LKDVMETGANEVYIVQSERYGEVLLPAIHECILEVDPEEKKMTVHLMEGLI 178
>gi|266625654|ref|ZP_06118589.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
gi|288862441|gb|EFC94739.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
Length = 170
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELR--ILKMYRKNKR 59
+++L+ + I +THG+ GEV + ++ + V+ +L+ I +
Sbjct: 1 MEQLLRVGVISSTHGVKGEVKVFPTTDDAARFKKLKQVILDTGKEQLKLEIEGVKFFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G D I + + + R +L DE F DL ++ G+ +G +
Sbjct: 61 VILKFKGYDTIEDIEKYKGKDILVTRDQ--AVKLGPDENFIVDLIGLKVVTEDGEPFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + E+K K L P + + V+L+ + + + L+
Sbjct: 119 TDVIKTGANDVYEVKTAEGKEVLFPAIRECIRNVDLEAGVVTVHIMDGLLD 169
>gi|327441076|dbj|BAK17441.1| RimM protein required for 16S rRNA processing [Solibacillus
silvestris StLB046]
Length = 173
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNK 58
+ + I THG+ GE+ I S + + L + + I R
Sbjct: 2 EWFNVGRIVNTHGIRGELRILSTTDFEEERFAVGSKLAAFKKDDKKPTWVTISSSRRHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF G++NI+ ++ L ++ELE++E+++ ++++ E F +G+ G
Sbjct: 62 FILVTFEGMENINLVEPFKEGLLKVSMDQLAEDELEDNEYYHFEIKDCEVFSEEGELIGV 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + GA + E+K K IP+ + V ++N+ E KI+I + L
Sbjct: 122 VTDILETGANDVWEVKAQNGKKHYIPYIEDIVKDINVDEKKIIIHVMEGLLE 173
>gi|27364980|ref|NP_760508.1| 16S rRNA-processing protein RimM [Vibrio vulnificus CMCP6]
gi|37680971|ref|NP_935580.1| 16S rRNA-processing protein [Vibrio vulnificus YJ016]
gi|320155364|ref|YP_004187743.1| 16S rRNA processing protein RimM [Vibrio vulnificus MO6-24/O]
gi|29611849|sp|Q8DC32|RIMM_VIBVU RecName: Full=Ribosome maturation factor rimM
gi|46397679|sp|Q7MHT2|RIMM_VIBVY RecName: Full=Ribosome maturation factor rimM
gi|27361126|gb|AAO10035.1| 16S rRNA processing protein RimM [Vibrio vulnificus CMCP6]
gi|37199721|dbj|BAC95551.1| RimM protein [Vibrio vulnificus YJ016]
gi|319930676|gb|ADV85540.1| 16S rRNA processing protein RimM [Vibrio vulnificus MO6-24/O]
Length = 182
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D+ +++ G+T+G+ G + + SY +N L Y + + E ++ R NK
Sbjct: 11 DERIVVGKFGSTYGIRGWLKVFSYTDNAESLFDYSPWYVNQKGEWVEFKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A L +L++ EL EDEF+ +L M+ G G V
Sbjct: 71 VAKLEGLDVREDAHLLTNLEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTNGYDLGVVT 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + +++V+ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVDWDPG 181
>gi|145593858|ref|YP_001158155.1| 16S rRNA-processing protein RimM [Salinispora tropica CNB-440]
gi|209573594|sp|A4X4H7|RIMM_SALTO RecName: Full=Ribosome maturation factor rimM
gi|145303195|gb|ABP53777.1| 16S rRNA processing protein RimM [Salinispora tropica CNB-440]
Length = 180
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 17/180 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR--------------ELRIL 51
++++ IG HG+ GEV ++ + P + + EL +
Sbjct: 1 MLVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVE 60
Query: 52 KMYRKNKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
R + TF G+ + + A LR + R D E EF + L +
Sbjct: 61 AARWHQGRVLLVTFEGVLDRNVAEALRGTLVGVDRADVAPPTDPE-EFHDHQLVGLAVVT 119
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ G++ + + A +L ++ + LIPF + V E++L ++++DP L+
Sbjct: 120 SAGERLGEIARIDHAPAADLLVLRRPGRRDVLIPFVQAIVPEIDLAGGRVVVDPPGGLLD 179
>gi|34499129|ref|NP_903344.1| 16S rRNA-processing protein RimM [Chromobacterium violaceum ATCC
12472]
gi|48474349|sp|Q7NRV6|RIMM_CHRVO RecName: Full=Ribosome maturation factor rimM
gi|34104980|gb|AAQ61336.1| 16S rRNA processing protein [Chromobacterium violaceum ATCC 12472]
Length = 169
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
+ LV+M + G+ G V I + L Y + + + + K
Sbjct: 4 EDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQPKAL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ +A LR ++ R + E + E++ DL + ++QG+ G+V
Sbjct: 64 AAKLEGVDDRDAAEALRGTQIAIPRSELP--EAGDGEYYWADLIGLSVVNQQGETLGKVD 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA +L +K + LIPF VLEV E +IL+D GL+
Sbjct: 122 SLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGRILVD---WGLD 168
>gi|16803833|ref|NP_465318.1| 16S rRNA-processing protein RimM [Listeria monocytogenes EGD-e]
gi|224500788|ref|ZP_03669137.1| 16S rRNA-processing protein [Listeria monocytogenes Finland 1988]
gi|224503775|ref|ZP_03672082.1| 16S rRNA-processing protein [Listeria monocytogenes FSL R2-561]
gi|254831606|ref|ZP_05236261.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 10403S]
gi|21362860|sp|Q8Y6A2|RIMM_LISMO RecName: Full=Ribosome maturation factor rimM
gi|16411247|emb|CAC99871.1| lmo1793 [Listeria monocytogenes EGD-e]
Length = 172
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K + LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTN--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 172
>gi|254901179|ref|ZP_05261103.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J0161]
gi|254914088|ref|ZP_05264100.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293592110|gb|EFG00445.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 172
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 172
>gi|226945996|ref|YP_002801069.1| 16S rRNA-processing protein RimM [Azotobacter vinelandii DJ]
gi|259585642|sp|C1DDY6|RIMM_AZOVD RecName: Full=Ribosome maturation factor rimM
gi|226720923|gb|ACO80094.1| 16S rRNA processing protein RimM [Azotobacter vinelandii DJ]
Length = 178
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L Y ++ ++ R++ +++ + +
Sbjct: 9 DGLIVLGKITSVHGVRGEVKVYSFTDPIDNLLDYRFWTLRRGDERRQIELVRGRPQGRLL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A GI++ A L D ++ L+E EF+ LE + DR+G+ +G+V
Sbjct: 69 VARLKGIEDRDGARALADFEVCVPIAQLPR--LDEGEFYWHQLEGLRVVDREGRLFGKVD 126
Query: 121 GVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L ++ ++ L+P+T VL V+L +I +D
Sbjct: 127 HLLETGANDVLVVRPCTGSLDDRERLLPYTDQCVLRVDLAAGEIRVD 173
>gi|256762839|ref|ZP_05503419.1| 16S rRNA processing protein RimM [Enterococcus faecalis T3]
gi|256964818|ref|ZP_05568989.1| 16S rRNA processing protein RimM [Enterococcus faecalis HIP11704]
gi|257422301|ref|ZP_05599291.1| 16S rRNA processing protein rimM [Enterococcus faecalis X98]
gi|307272900|ref|ZP_07554147.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0855]
gi|307287946|ref|ZP_07567979.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0109]
gi|256684090|gb|EEU23785.1| 16S rRNA processing protein RimM [Enterococcus faecalis T3]
gi|256955314|gb|EEU71946.1| 16S rRNA processing protein RimM [Enterococcus faecalis HIP11704]
gi|257164125|gb|EEU94085.1| 16S rRNA processing protein rimM [Enterococcus faecalis X98]
gi|306501091|gb|EFM70398.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0109]
gi|306510514|gb|EFM79537.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0855]
gi|315157026|gb|EFU01043.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0043]
gi|315163844|gb|EFU07861.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1302]
gi|315167369|gb|EFU11386.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1341]
gi|327535419|gb|AEA94253.1| 16S rRNA processing protein RimM [Enterococcus faecalis OG1RF]
Length = 174
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + +L+ + ++K +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L ++ + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVEKDNLA--ELAEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|291545205|emb|CBL18314.1| 16S rRNA processing protein RimM [Ruminococcus sp. 18P13]
Length = 170
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K L+ + + HGL G+V I + ++ L + LY D + ++
Sbjct: 1 MQK--NLLEIGKVVNIHGLRGDVKIQPWCDSAGFLCEFDTLYRADGTPMSVVSARAHKGM 58
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+ F+GID A LR+ LY R D EL+ D +F DL ++ D G +G+
Sbjct: 59 AVVRFAGIDTPEQAEALRNTVLYMNRAD---VELDADTYFIRDLIGLQVLDADTGAVYGR 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ V GA + I+ K L P V+E +L++ + I P+ ++
Sbjct: 116 LEEVLETGANDVYTIRTPEGKQLLFPAIGDVVVETDLEQGIMRIRPLEGLFDDA 169
>gi|317495378|ref|ZP_07953747.1| 16S rRNA processing protein RimM [Gemella moribillum M424]
gi|316914437|gb|EFV35914.1| 16S rRNA processing protein RimM [Gemella moribillum M424]
Length = 169
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDN---RELRILKMYRKNKRFI 61
+ + I TH L GEV + S + + + +L + N RE+ + +
Sbjct: 3 LKVGKIVNTHSLKGEVKVISSTDFEEERFKKGSKLLITRGNQLIREVVVQSYRNHKNFLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID++ A +L++L++ K ELEE+EF+ + E FD K G++
Sbjct: 63 VKFEGIDSVEEAEKLKNLQIKIDSD--KVGELEENEFYFHQIIGCEVFDENDKNLGEIID 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK K LIP+ + V ++++ K+ I+ + ++
Sbjct: 121 ILTPGANDVWVIKGENGKEILIPYIEDVVKKIDITNKKVNIEVMEGLID 169
>gi|315282787|ref|ZP_07871115.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
gi|313613566|gb|EFR87382.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
Length = 172
Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V E+N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKEINTNDKKITIEVMEGLLD 172
>gi|291539679|emb|CBL12790.1| 16S rRNA processing protein RimM [Roseburia intestinalis XB6B4]
Length = 194
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 6/179 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE---LRILKMYRKNKR 59
++ L+ + I TTHG+ GEV + ++ + + + +E L I +
Sbjct: 18 MENLLQVGVITTTHGVRGEVKVFPTTDDAARFKKLKQVILDTGKEHLALEIAGVKFFKNM 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ R LY R++ +L+++E+F DL ++ +G+ G++
Sbjct: 78 VILKFKGYDNINDVEMFRKKSLYVTREN--AVKLKKNEYFIADLIGLKMISDEGEDLGEL 135
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V GA + I L+P K V +V+++ + + + + + +
Sbjct: 136 TDVLQTGANDVYVISKEGADDILLPAIKDCVKQVDIEGGTMQVHLLDGLRDLNSRREEA 194
>gi|226313201|ref|YP_002773095.1| 16S rRNA processing protein [Brevibacillus brevis NBRC 100599]
gi|226096149|dbj|BAH44591.1| probable 16S rRNA processing protein [Brevibacillus brevis NBRC
100599]
Length = 175
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSN--DNRELRILKMYRKNKRFIA 62
+ + THGL GEV + + P R Y+ + + +L+I I
Sbjct: 12 VGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLSEPLKLKIASRRPHKNFEIV 71
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G ++I+ + + +L + ELEEDEF+ L +G+ G++ V
Sbjct: 72 SFHGFEHINDIEKYKGGELKIPAEAL--MELEEDEFYIHQLVGCVVVTDEGEELGKIVDV 129
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + +K L+P+ + EV++ +++ + L
Sbjct: 130 MQPGANDVWVVKGKRG-EILLPYIDECIKEVDITNKRVVCHLMEGLL 175
>gi|315639579|ref|ZP_07894720.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
gi|315484678|gb|EFU75133.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
Length = 174
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR--ILKMYRKN 57
+ + + + I THG+ GEV + S + ++ VL+ + L I R
Sbjct: 1 MTEYLNVGKIVNTHGIRGEVRVISQTDFALERYQPGKTLVLFRENQAPLTLTIDTYRRHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ RD L ++D EL E+EF+ ++ E +GK G
Sbjct: 61 NFDLLSFEGYPSINQVESFRDGILKVAKED--RVELAENEFYYYEIIGAEVVTEEGKVIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ +K L+P+ + EV++ KI+++ L++
Sbjct: 119 KVKEILSPGANDVWVVQRKGKKDALLPYIDSVIKEVDVTAQKIIVEIPEGLLDDE 173
>gi|229545511|ref|ZP_04434236.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1322]
gi|255975553|ref|ZP_05426139.1| 16S rRNA processing protein RimM [Enterococcus faecalis T2]
gi|256619383|ref|ZP_05476229.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 4200]
gi|256853423|ref|ZP_05558793.1| ribosome maturation factor rimM [Enterococcus faecalis T8]
gi|256959221|ref|ZP_05563392.1| 16S rRNA processing protein RimM [Enterococcus faecalis DS5]
gi|257079289|ref|ZP_05573650.1| ribosome maturation factor rimM [Enterococcus faecalis JH1]
gi|257084889|ref|ZP_05579250.1| 16S rRNA processing protein RimM [Enterococcus faecalis Fly1]
gi|257090191|ref|ZP_05584552.1| 16S rRNA processing protein rimM [Enterococcus faecalis CH188]
gi|257416344|ref|ZP_05593338.1| 16S rRNA processing protein RimM [Enterococcus faecalis AR01/DG]
gi|294779809|ref|ZP_06745196.1| 16S rRNA processing protein RimM [Enterococcus faecalis PC1.1]
gi|300861299|ref|ZP_07107386.1| 16S rRNA processing protein RimM [Enterococcus faecalis TUSoD Ef11]
gi|307268249|ref|ZP_07549633.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4248]
gi|307275653|ref|ZP_07556794.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2134]
gi|307280517|ref|ZP_07561566.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0860]
gi|307295976|ref|ZP_07575808.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0411]
gi|312900945|ref|ZP_07760239.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0470]
gi|312902686|ref|ZP_07761890.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0635]
gi|229309427|gb|EEN75414.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1322]
gi|255968425|gb|EET99047.1| 16S rRNA processing protein RimM [Enterococcus faecalis T2]
gi|256598910|gb|EEU18086.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 4200]
gi|256711882|gb|EEU26920.1| ribosome maturation factor rimM [Enterococcus faecalis T8]
gi|256949717|gb|EEU66349.1| 16S rRNA processing protein RimM [Enterococcus faecalis DS5]
gi|256987319|gb|EEU74621.1| ribosome maturation factor rimM [Enterococcus faecalis JH1]
gi|256992919|gb|EEU80221.1| 16S rRNA processing protein RimM [Enterococcus faecalis Fly1]
gi|256999003|gb|EEU85523.1| 16S rRNA processing protein rimM [Enterococcus faecalis CH188]
gi|257158172|gb|EEU88132.1| 16S rRNA processing protein RimM [Enterococcus faecalis ARO1/DG]
gi|294453183|gb|EFG21598.1| 16S rRNA processing protein RimM [Enterococcus faecalis PC1.1]
gi|300850338|gb|EFK78088.1| 16S rRNA processing protein RimM [Enterococcus faecalis TUSoD Ef11]
gi|306496307|gb|EFM65886.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0411]
gi|306504065|gb|EFM73281.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0860]
gi|306507758|gb|EFM76887.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2134]
gi|306515409|gb|EFM83940.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4248]
gi|310633740|gb|EFQ17023.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0635]
gi|311292044|gb|EFQ70600.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0470]
gi|315028951|gb|EFT40883.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4000]
gi|315033330|gb|EFT45262.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0017]
gi|315036710|gb|EFT48642.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0027]
gi|315143553|gb|EFT87569.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2141]
gi|315149306|gb|EFT93322.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0012]
gi|315161511|gb|EFU05528.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0645]
gi|315576950|gb|EFU89141.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0630]
gi|323481045|gb|ADX80484.1| 16S rRNA processing protein RimM [Enterococcus faecalis 62]
gi|329572862|gb|EGG54487.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1467]
Length = 174
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + +L+ + ++K +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L + + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVAKDNLA--ELAEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|299536771|ref|ZP_07050079.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
gi|298727783|gb|EFI68350.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
Length = 171
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRE--LRILKMYRKNK 58
+ + I THG+ GEV + S + + +D + + I + R
Sbjct: 2 EWFNVGRIVNTHGIRGEVRVLSTTDFEEERFTVGNKLAAFKKDDKKPTWVTIESVRRHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF G++NI+ L++ L + D+ LEE+EFF ++ +G+ G
Sbjct: 62 FILLTFEGMNNINLVEPLKEGMLKVTKDQMSDDLLEENEFFFHEIIGCTVISEEGETIGV 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + +K T +K IP+ + V ++++ + KI+I + L
Sbjct: 122 VADILQTGANDVWVVKGT-KKEHYIPYIEDIVKDIDVMDKKIVIHVMEGLL 171
>gi|329770416|ref|ZP_08261798.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
gi|328836539|gb|EGF86199.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
Length = 169
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNR---ELRILKMYRKNKRFI 61
+ + I TH L GEV + S + + + +L + N+ E+ + +
Sbjct: 3 LKVGKIVNTHSLRGEVKVISSTDFEEERFKKGSKLLITRGNQVIEEVVVESYRSHKNSLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID+I+ A + ++L+L ++ ELEE+EF+ ++ FD G+V
Sbjct: 63 VKFEGIDSINEAEKFKNLQLKVDSENI--SELEENEFYFHEIIGCRVFDENNMLLGEVVE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK K LIP+ V V++Q KI I+ + ++
Sbjct: 121 ILTPGANDVWVIKGENGKEILIPYIVDVVKNVDVQNKKIDIEIMEGLID 169
>gi|146297157|ref|YP_001180928.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|166226429|sp|A4XLF2|RIMM_CALS8 RecName: Full=Ribosome maturation factor rimM
gi|145410733|gb|ABP67737.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 169
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + ++P + YVL ++ +++L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDSPDRFSELNYVLLEDNLSQKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ L +R+ K +L ED +F D+ +E +D G+ G+V
Sbjct: 61 IMKFREISSIDEALKLKNRFLVIERERAK--KLPEDTYFICDIIGLEVYDLDGRKLGKVK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + ++ +K LIP K V EVN+++ + I I L+
Sbjct: 119 DVLQTGSNDVYICQSYIGKKDLLIPALKDIVKEVNIEQGYMKIKVIEGLLD 169
>gi|159036842|ref|YP_001536095.1| 16S rRNA-processing protein RimM [Salinispora arenicola CNS-205]
gi|209573593|sp|A8M679|RIMM_SALAI RecName: Full=Ribosome maturation factor rimM
gi|157915677|gb|ABV97104.1| 16S rRNA processing protein RimM [Salinispora arenicola CNS-205]
Length = 180
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 17/180 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR--------------ELRIL 51
++++ IG HG+ GEV ++ + P + + EL +
Sbjct: 1 MLVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPASPGAYRVPSELTVE 60
Query: 52 KMYRKNKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
R + F G+ + + A LR + R D E EF + L +
Sbjct: 61 TARWHQGRLLLVAFEGVLDRNVAEALRGTFVGVDRADVTAPTDPE-EFHDHQLVGLAVVT 119
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ G++ + + A +L ++ ++ LIPF + V EV+L ++++DP L+
Sbjct: 120 SAGERLGEIVRIDHAPAADLLVLRRPGDRDVLIPFVRAIVPEVDLAGGRVVVDPPGGLLD 179
>gi|225571998|ref|ZP_03780862.1| hypothetical protein RUMHYD_00292 [Blautia hydrogenotrophica DSM
10507]
gi|225040531|gb|EEG50777.1| hypothetical protein RUMHYD_00292 [Blautia hydrogenotrophica DSM
10507]
Length = 168
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR-ELRILKMYRKNKR 59
++ + + I +THG+ GEV + N DL+ +L + R L I + +
Sbjct: 1 MEAFLQVGVISSTHGVRGEVKVFPTTNEKERFLDLDSVILDTGKERLTLEIEGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + + L+ R+ L EDE++ DL M+ GKY+G++
Sbjct: 61 AILKFKGFDNINDIEKYKGKSLWIPREQ--AVPLSEDEYYIADLLGMDVVLEDGKYFGRL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + ++ + L+P K VL+V ++ N++ I + +
Sbjct: 119 EDVIETGANDVYVVRTEEGQEVLLPAIKECVLQVEVERNQMRIHLMKGLI 168
>gi|258653300|ref|YP_003202456.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
gi|258556525|gb|ACV79467.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
Length = 167
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
V++ IG HGL G+V I ++P + D L ++ R + F
Sbjct: 3 VVVGRIGRPHGLRGDVTIAVNTDDPDARFAAGSVLGTDPDRGPLTVVTRRRSGGVLLLRF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GI++ +A LR L + + + + DEF++ L + D G+ G+V V++
Sbjct: 63 EGIEDRDAAEALRGTSLTVPAETLPESD-DPDEFYDHQLIGLAVRDPSGQDLGKVVEVWH 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A +L ++ +PF + V V+L ++ +++DP
Sbjct: 122 PPASPVLLVRRPDGSDEAVPFVRALVPTVDLAQSYLVVDPPEGM 165
>gi|323495856|ref|ZP_08100924.1| 16S rRNA-processing protein RimM [Vibrio sinaloensis DSM 21326]
gi|323319072|gb|EGA72015.1| 16S rRNA-processing protein RimM [Vibrio sinaloensis DSM 21326]
Length = 182
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 DDKIVVGKFGATYGIRGWLKVFSYTDNTESIFDYAPWFIKQGEKWVEYKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D A + + ++ EL DEF+ DL M+ +G G V
Sbjct: 71 VVKLEGLDVREEAQLMTNFEISIDPAVLP--ELPSDEFYWRDLIGMQVVTDKGYDLGTVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + + ++ +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKTIDRTAQRIEVDWDPG 181
>gi|304392572|ref|ZP_07374512.1| 16S rRNA processing protein RimM [Ahrensia sp. R2A130]
gi|303295202|gb|EFL89562.1| 16S rRNA processing protein RimM [Ahrensia sp. R2A130]
Length = 183
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M L+L+A IG G+ GE+ + ++ +NP L+ Y L + D R ++ +M
Sbjct: 1 MTDPSSLILLAQIGRPQGIKGELRVKAFTDNPEALDDYGALRTADGRRFKVKRMRPGKGV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G++ A +L+ +R E +EDEF+ TDL M D +G G V
Sbjct: 61 LIVKFEGVNTREEAEAENGTELFIERHRLPPVE-DEDEFYVTDLIGMVVVDGEGLQIGTV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+FGAGS+LEI + ++ FT V +V+L ++ + A + +
Sbjct: 120 KDAPDFGAGSVLEITGGAG-SVMVDFTHANVPDVDLAAGRVTVIMPAELVTDENDGEEDE 178
>gi|29376428|ref|NP_815582.1| 16S rRNA processing protein RimM [Enterococcus faecalis V583]
gi|227519247|ref|ZP_03949296.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0104]
gi|227555546|ref|ZP_03985593.1| 16S rRNA processing protein RimM [Enterococcus faecalis HH22]
gi|256961602|ref|ZP_05565773.1| 16S rRNA-processing protein [Enterococcus faecalis Merz96]
gi|257419593|ref|ZP_05596587.1| 16S rRNA-processing protein [Enterococcus faecalis T11]
gi|293384455|ref|ZP_06630335.1| 16S rRNA processing protein RimM [Enterococcus faecalis R712]
gi|293389164|ref|ZP_06633629.1| 16S rRNA processing protein RimM [Enterococcus faecalis S613]
gi|312908378|ref|ZP_07767341.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 512]
gi|312910550|ref|ZP_07769392.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 516]
gi|48474386|sp|Q833P4|RIMM_ENTFA RecName: Full=Ribosome maturation factor rimM
gi|29343892|gb|AAO81652.1| 16S rRNA processing protein RimM [Enterococcus faecalis V583]
gi|227073303|gb|EEI11266.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0104]
gi|227175322|gb|EEI56294.1| 16S rRNA processing protein RimM [Enterococcus faecalis HH22]
gi|256952098|gb|EEU68730.1| 16S rRNA-processing protein [Enterococcus faecalis Merz96]
gi|257161421|gb|EEU91381.1| 16S rRNA-processing protein [Enterococcus faecalis T11]
gi|291078238|gb|EFE15602.1| 16S rRNA processing protein RimM [Enterococcus faecalis R712]
gi|291081503|gb|EFE18466.1| 16S rRNA processing protein RimM [Enterococcus faecalis S613]
gi|310625598|gb|EFQ08881.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 512]
gi|311289098|gb|EFQ67654.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 516]
gi|315169547|gb|EFU13564.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1342]
gi|315574505|gb|EFU86696.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309B]
gi|315581833|gb|EFU94024.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309A]
Length = 174
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + + +L+ + ++K +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGAMLLLFQEKKAPIELVVKSHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L + + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVAKDNLA--ELAEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|330466289|ref|YP_004404032.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
gi|328809260|gb|AEB43432.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
Length = 187
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN---------RYVLYSNDNRE---------- 47
L+++ IG HG+ GEV ++ + P V+
Sbjct: 2 LLIVGRIGKPHGIRGEVTVEVRTDEPDTRFAPGVVLATMPGVVPRGGQEPAAEPGERYEV 61
Query: 48 ---LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
L + + R + F G+ + A LR L D E E EF + L
Sbjct: 62 PDALTVEAVRWHQGRLLVAFEGVLDRDVAEALRGTLLTVDSADVAPPEDPE-EFHDHQLV 120
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ G+ G+V + + A +L ++ +T LIPF K V EV+L ++++DP
Sbjct: 121 GLAVVTPSGERLGEVARIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRVVVDP 180
Query: 165 IAAGLN 170
L+
Sbjct: 181 PGGLLD 186
>gi|226939294|ref|YP_002794365.1| 16S rRNA-processing protein RimM [Laribacter hongkongensis HLHK9]
gi|226714218|gb|ACO73356.1| RimM [Laribacter hongkongensis HLHK9]
Length = 168
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
+K LV+M + G+ G V I + L Y + + +E R+++ +
Sbjct: 1 MKTQDLVVMGYVSGAFGVRGWVRIQADTEYADGLFDYPTWWIGREDSWQEYRVVEGKAQP 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +A G+D+ A LR ++ R E ++EF+ DL M + G +G
Sbjct: 61 KGVVAQLEGVDDRDVACALRGCEVAIPRSALP--ETGDNEFYWADLIGMAVSNPAGTAFG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V + GA +L +++ ++T LIPF K +L+V+LQ ++ +D A
Sbjct: 119 VVDSLMQTGANDVLVVRDGKQQT-LIPFVKAFILDVDLQARRLTVDWEAG 167
>gi|227551891|ref|ZP_03981940.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257895518|ref|ZP_05675171.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|293378383|ref|ZP_06624552.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
gi|293570324|ref|ZP_06681384.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|227178963|gb|EEI59935.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257832083|gb|EEV58504.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|291609603|gb|EFF38865.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|292643247|gb|EFF61388.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
Length = 174
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPIELTVKSHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ + RD L + + +L+E+EF+ ++ + + G G
Sbjct: 61 NFDLLSFEGHPSINDVEKYRDGILKVSKDN--SVDLDENEFYYHEIIGLRVVEEDGTELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ + L+P+ V EV+L+ I ++ +++
Sbjct: 119 KVKEILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVIRVEIPEGLIDDE 173
>gi|86742273|ref|YP_482673.1| 16S rRNA-processing protein RimM [Frankia sp. CcI3]
gi|109893016|sp|Q2J6Z8|RIMM_FRASC RecName: Full=Ribosome maturation factor rimM
gi|86569135|gb|ABD12944.1| 16S rRNA processing protein RimM [Frankia sp. CcI3]
Length = 179
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 10/177 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + +++ IG HG+ GEV I+ + P + + L + + + R
Sbjct: 1 MAEEIVVGRIGRPHGIRGEVTIEIRTDVPHRRFVVGAVLGREGGGTALTVSGAHWHSGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-------FFNTDLEEMETFDRQG 113
+ F G+D+ +A LR + L + D +++ DL + G
Sbjct: 61 LLHFRGVDDRGAAEALRGVLLTIDADQAGSPLDDADGDGEAVEMWWDRDLVGLRAVTTAG 120
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + AG +L I L+PF + V V+ +I++DP L+
Sbjct: 121 MLLGHVTDIIHSPAGDLLAIGGPDGGEHLVPFVRDIVPTVDPPAGRIVVDPPPGLLD 177
>gi|311898560|dbj|BAJ30968.1| putative 16S rRNA-processing protein RimM [Kitasatospora setae
KM-6054]
Length = 210
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 5/167 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++ IG HG+ G+V ++ + P L + D L I + R +
Sbjct: 3 LVVGKIGRAHGIRGDVSVEVRTDEPELRLGPGAVLLTDPAAIGPLTIESGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR L D ++ + DE+++ L ++ G G++ V
Sbjct: 63 FAGVKDRTAAEALRGTML-IAEIDPEETPDDPDEYYDHQLIGLDVVLADGTPVGELTEVI 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +L ++ L+PF + V ++L E ++++ P ++
Sbjct: 122 HLPYQDLLTVQRPDGTEVLVPFVEQIVPVIDLDEQRVVLTPPPGLID 168
>gi|226224396|ref|YP_002758503.1| 16S rRNA processing protein RimM [Listeria monocytogenes Clip81459]
gi|259585647|sp|C1KW92|RIMM_LISMC RecName: Full=Ribosome maturation factor rimM
gi|225876858|emb|CAS05567.1| Putative 16S rRNA processing protein RimM [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 172
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ GK
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGKEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|251788623|ref|YP_003003344.1| 16S rRNA-processing protein RimM [Dickeya zeae Ech1591]
gi|247537244|gb|ACT05865.1| 16S rRNA processing protein RimM [Dickeya zeae Ech1591]
Length = 182
Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+T+G+ G + + S + + Y + + + I N+ +
Sbjct: 12 NPIVLGKLGSTYGIKGWLRVFSSTEDAESIFDYQPWFIRNKGLWQPIEIESWRHHNQDLV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A+ L + ++ EL+E +++ DL + G G+V
Sbjct: 72 IKLKGIDDREAANLLTNCEIVVDSAQLP--ELDEGDYYWKDLIGCDVVTIGGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF T+ + ++L ++I +D
Sbjct: 130 MMETGSNDVLVVRANLKDAYGVKERLIPFLTEQVIKHIDLSTHRIEVDWDPG 181
>gi|260773520|ref|ZP_05882436.1| 16S rRNA processing protein RimM [Vibrio metschnikovii CIP 69.14]
gi|260612659|gb|EEX37862.1| 16S rRNA processing protein RimM [Vibrio metschnikovii CIP 69.14]
Length = 176
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + + +++ G ++G+ G + + SY +N + Y + + + E ++ R
Sbjct: 1 MSEQGEKIVVGKFGASYGIRGWLKVLSYTDNAESIFDYSPWLVNQNGEWVEYKVESWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK +A G+D A L + ++ EL EDEF+ +L M QG
Sbjct: 61 NKGLVAKLEGLDVREDAHLLTNFEISIDPASLP--ELSEDEFYWRELFGMRVVTTQGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+V + G+ +L +K +K LIPF + + +++ +I +D A
Sbjct: 119 GEVVDMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKQIDRTAQRIEVDWDPA 175
>gi|315174247|gb|EFU18264.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1346]
Length = 174
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + +L+ + ++K +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L + + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVAKDNLA--ELGEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|257082272|ref|ZP_05576633.1| 16S rRNA-processing protein [Enterococcus faecalis E1Sol]
gi|256990302|gb|EEU77604.1| 16S rRNA-processing protein [Enterococcus faecalis E1Sol]
Length = 174
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + +L+ + ++K +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVKSHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L + + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVAKDNLA--ELAEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ + +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRSKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|164688560|ref|ZP_02212588.1| hypothetical protein CLOBAR_02205 [Clostridium bartlettii DSM
16795]
gi|164602973|gb|EDQ96438.1| hypothetical protein CLOBAR_02205 [Clostridium bartlettii DSM
16795]
Length = 170
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 4 LDKLVLM---ATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDNRELRILKMYRKN 57
+D + + I T GL GEV + Y ++ DL + L N + + ++ K
Sbjct: 1 MDNKLTVFRIGQIVNTQGLKGEVRVYPYTDDINRFDDLEYFYLDKGLNNKYEVERVRYKG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I GID+I A +L+ +Y R K ELEEDEFF DL ++ F G+ G
Sbjct: 61 NMVIMKIKGIDSIELAQKLKTKNMYIGRDQGK--ELEEDEFFVADLIGLDVFTVDGEKVG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V V + + N EK +LIP + V ++L+ENK++I+PI L+
Sbjct: 119 VVKDVLQHAINDVYVV-NNGEKEYLIPSIEKFVPTIDLEENKMIINPIKGMLD 170
>gi|90421130|ref|ZP_01229032.1| 16S rRNA processing protein rimM [Aurantimonas manganoxydans
SI85-9A1]
gi|90334622|gb|EAS48402.1| 16S rRNA processing protein rimM [Aurantimonas manganoxydans
SI85-9A1]
Length = 194
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 4/186 (2%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFI 61
KL+ VL+ +G G+ GE + S+ +P DL Y L +L +
Sbjct: 6 KLENPVLLGVVGGAQGIKGECRVRSFTADPTDLGAYGPLVDASGNRYTVLSARVAKNVVV 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + + + A L KL+ R + ++DEF+ DL G G V
Sbjct: 66 VRFKEVADRNHAERLNGRKLFVDRSVLPEPA-DDDEFYLEDLVGYAVETVAGDAVGTVIA 124
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
++F AG I+EI+ T +T +IPF++ A+ ++ + ++++P AGL T + D
Sbjct: 125 FHDFNAGDIVEIRPTKGQTLMIPFSEAAIPVIDAERRLMVVEPGPAGL--ATPDDAPEDG 182
Query: 182 PLDSAG 187
G
Sbjct: 183 GEAEGG 188
>gi|54026126|ref|YP_120368.1| 16S rRNA-processing protein RimM [Nocardia farcinica IFM 10152]
gi|59798616|sp|Q5YS37|RIMM_NOCFA RecName: Full=Ribosome maturation factor rimM
gi|54017634|dbj|BAD59004.1| putative 16S rRNA processing protein [Nocardia farcinica IFM 10152]
Length = 174
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ ++P L + S + RE + + R
Sbjct: 3 LVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ + +G+D+ +A LR + + + DEF++ +LE + D G G V
Sbjct: 63 LVSLAGVDDRSAADALRGTLFVVDSAELPPSD-DPDEFYDHELEGLSVRDTAGAVLGTVT 121
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ + LIPF V V++ E ++IDP L+
Sbjct: 122 EVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLD 172
>gi|315502433|ref|YP_004081320.1| 16S rRNA processing protein rimm [Micromonospora sp. L5]
gi|315409052|gb|ADU07169.1| 16S rRNA processing protein RimM [Micromonospora sp. L5]
Length = 179
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR-------------ELRILK 52
L+++ IG HG+ GEV ++ + P + + + L +
Sbjct: 2 LLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVES 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + F G+ A LR+ L D E E EF + L + R
Sbjct: 62 ARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPEDPE-EFHDHQLVGLTVVTRD 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G+V + + A +L ++ +T L+PF K V EV+L ++++D L+
Sbjct: 121 GEHVGEVARIDHAPASDMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVDLPGGLLD 178
>gi|89053239|ref|YP_508690.1| 16S rRNA-processing protein RimM [Jannaschia sp. CCS1]
gi|109893020|sp|Q28UE7|RIMM_JANSC RecName: Full=Ribosome maturation factor rimM
gi|88862788|gb|ABD53665.1| 16S rRNA processing protein RimM [Jannaschia sp. CCS1]
Length = 187
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIATFSG 66
+ I + G+ GEV + S+ P D+ Y S + + I + A SG
Sbjct: 8 CVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLTRPVKAGYAAMLSG 67
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ A LR +LYA R L +DEF++ DL + D G+ G V V N G
Sbjct: 68 VATKEDADALRGTRLYAPRSALPS--LPDDEFYHADLVGLTVLDTGGEVIGTVASVANHG 125
Query: 127 AGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
AG ILE+ LIPFT V V++ ++++D +
Sbjct: 126 AGDILELSGPGLPSGLLIPFTLAVVPTVDIAAGRVIVDMPDGLIGGDKPDTS 177
>gi|84515964|ref|ZP_01003325.1| putative 16S rRNA processing protein [Loktanella vestfoldensis
SKA53]
gi|84510406|gb|EAQ06862.1| putative 16S rRNA processing protein [Loktanella vestfoldensis
SKA53]
Length = 171
Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFI 61
+ V++ IG + G+ GEV + S+ +P+ + Y ++ + +++ + F
Sbjct: 1 MTDRVIVGMIGGSFGVKGEVRLKSFCADPMAIADYTPLYTEHGDSIAQVVLTGQLKGGFT 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A SG+ A LR++ LYA+R L +DE++ DL + D G GQV
Sbjct: 61 ARLSGVVTKEDADALRNVALYAERAAMPS--LPDDEYYYADLIGLAVLDTGGSKLGQVKS 118
Query: 122 VYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GAG++LE+ + T L+PFT+ AV V+L +I+ DP A +
Sbjct: 119 VVDHGAGALLELHVPGQSDTVLLPFTQAAVPTVDLAAGRIIADPPAGLFASD 170
>gi|255522476|ref|ZP_05389713.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
J1-175]
gi|328466403|gb|EGF37554.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 1816]
gi|332312234|gb|EGJ25329.1| Ribosome maturation factor rimM [Listeria monocytogenes str. Scott
A]
Length = 172
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 172
>gi|166031987|ref|ZP_02234816.1| hypothetical protein DORFOR_01689 [Dorea formicigenerans ATCC
27755]
gi|166028440|gb|EDR47197.1| hypothetical protein DORFOR_01689 [Dorea formicigenerans ATCC
27755]
Length = 168
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR-ELRILKMYRKNKR 59
+++L+ + I HG+ GEV + ++P+ L + +L + + +L + + +
Sbjct: 1 MEQLLQVGVITQPHGVRGEVKVFPTTDDPVRFKKLKKVILDTGKEKLDLEVEHVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F DNI+ + L R++ LEEDE+F D+ M+ G +G +
Sbjct: 61 VIVKFKEFDNINDIERYKRCPLLVTREN--AVPLEEDEYFVADMIGMKVITEDGTEFGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + I + L+P K VL V+++ I + + +
Sbjct: 119 SDVMETGANDVYVIDSKEHGEVLMPAIKECVLNVDMESGIITVHLMNGLI 168
>gi|16800973|ref|NP_471241.1| 16S rRNA-processing protein RimM [Listeria innocua Clip11262]
gi|21362865|sp|Q92AL5|RIMM_LISIN RecName: Full=Ribosome maturation factor rimM
gi|16414408|emb|CAC97137.1| lin1907 [Listeria innocua Clip11262]
Length = 172
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G+ IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP+ V ++N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGADKKEKLIPYIADVVKDINTNDKKITIEVMEGLLD 172
>gi|313623297|gb|EFR93533.1| 16S rRNA processing protein RimM [Listeria innocua FSL J1-023]
Length = 172
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G+ IH +++ L K D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K T +K LIP+ V ++N + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGTDKKEKLIPYIADVVKDINTNDKKITIEVMEGLLD 172
>gi|209965493|ref|YP_002298408.1| 16S rRNA processing protein RimM, putative [Rhodospirillum centenum
SW]
gi|238058954|sp|B6IP93|RIMM_RHOCS RecName: Full=Ribosome maturation factor rimM
gi|209958959|gb|ACI99595.1| 16S rRNA processing protein RimM, putative [Rhodospirillum centenum
SW]
Length = 201
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 3/185 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFI 61
+ +++A I HG++G V + S+ + + Y ++++ RE ++ + F+
Sbjct: 1 MTTRIVVAQILGAHGVHGRVKLKSFTADETAVFGYAPLTDESGRREFKLRRTGTGKDHFL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI +A LR +LY +R E +EDEF++ DL ++T + +G +
Sbjct: 61 AEVDGITGKEAADALRGTRLYIERDRLPAPE-DEDEFYHADLIGLDTVTADDQPFGTIKA 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
+Y+FGAG +LEI++ EKT +PFTK V + + +++++P A + + +
Sbjct: 120 IYDFGAGDMLEIRHVSEKTVFLPFTKACVPVIEIAAGRVVVEPPANFFAPAGPQPAEGEE 179
Query: 182 PLDSA 186
D A
Sbjct: 180 MPDGA 184
>gi|332976616|gb|EGK13457.1| 16S rRNA processing protein RimM [Desmospora sp. 8437]
Length = 173
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 9/170 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNK 58
L+ + I THG+ GEV + S + P L + R + +++
Sbjct: 5 DLLTVGRIAGTHGIRGEVRVHSRTDYPELRFAPGTQLLLVHPSLEEGRPITVVRARPHKD 64
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ F NI+ A + L R++ E EED F+ ++ +G+ G
Sbjct: 65 FWLVQFEEWTNINQAEPFKGGLLRVSREE--AVEPEEDAFYLHEIVGARVVTTEGEPVGV 122
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA + I+ LIPF V +V+ +++I +
Sbjct: 123 ITEILQPGANDVWVIRKDGGGEVLIPFIDDVVRKVDPSAKQVIIRWMEGL 172
>gi|256379918|ref|YP_003103578.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
gi|255924221|gb|ACU39732.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
Length = 172
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 7/171 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFI 61
V++ + HG+ GE+ +D ++P L +R+L + + R +
Sbjct: 3 VVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAKLRDGTSRDLTVAAARYHSGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + A LR L + + DEF++ LE + G G V
Sbjct: 63 VRFEEVLTRDVAELLRGTLLLGSTDALPPTD-DPDEFYDHQLEGLAAELADGTRIGTVKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G +L + L+PF + V V++ ++++DP L+
Sbjct: 122 IVHGPGGELLVLVREDGSEALVPFVRQIVPTVDVAGGRVVVDPPEGLLDAD 172
>gi|169827101|ref|YP_001697259.1| 16S rRNA-processing protein [Lysinibacillus sphaericus C3-41]
gi|209573567|sp|B1HQI2|RIMM_LYSSC RecName: Full=Ribosome maturation factor rimM
gi|168991589|gb|ACA39129.1| Probable 16S rRNA-processing protein [Lysinibacillus sphaericus
C3-41]
Length = 171
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRE--LRILKMYRKNK 58
+ + I THG+ GEV I S + + +D + + I + R
Sbjct: 2 EWFNVGRIVNTHGIRGEVRILSTTDFEKERFAVGNKLAAFKKDDKKPTGVTIQSVRRHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF G++NI+ ++ L + D+ LEE+EFF ++ +G+ G
Sbjct: 62 FILLTFEGMNNINLVEPFKEGLLKVTKDQMTDDLLEENEFFFHEIIGCTVVSEEGETIGV 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + +K +K IP+ + V ++++ E KI+I + L
Sbjct: 122 VNDILQTGANDVWVVKG-SKKEHYIPYIEDIVKDIDVDEKKIVIHVMEGLL 171
>gi|188579901|ref|YP_001923346.1| 16S rRNA-processing protein RimM [Methylobacterium populi BJ001]
gi|209573581|sp|B1ZL68|RIMM_METPB RecName: Full=Ribosome maturation factor rimM
gi|179343399|gb|ACB78811.1| 16S rRNA processing protein RimM [Methylobacterium populi BJ001]
Length = 224
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ P+ + Y L+++D R L + I
Sbjct: 45 LVLLGEFGRPHGLHGEVRLKSFTGEPLAIAGYGPLHASDGRTLELEDARPAPGGSPDLLI 104
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+DN A L + L R+ E +EDEFF TDL + D G G +
Sbjct: 105 VRVKGVDNRSGAEALNRITLAIARERLGQAE-DEDEFFLTDLIGLAVEDPSGTVIGTIVA 163
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V N+G G +LEI+ T L+PFTK V ++L K++ DP P
Sbjct: 164 VPNYGGGDLLEIRPAAGGPTALLPFTKAFVPTLDLAGGKVVADPPEDLF------APPGP 217
Query: 181 CPLDSAG 187
P D G
Sbjct: 218 KPADDPG 224
>gi|317152479|ref|YP_004120527.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
gi|316942730|gb|ADU61781.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
Length = 199
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 7/189 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNREL---RILKMYRKNKRFI 61
L+L+ + HG+ GE+ I S+A++P L + + + + +
Sbjct: 6 LILVGGVVRPHGIRGEICIKSHADSPSLFGLVAALYLQDKGKPPIPHAVRSWREHKGMVL 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
T G+D+ A LR ++ + D EL+E E + L G G +
Sbjct: 66 LTLDGVDDRDKAEALRGREVLVREADLP--ELDEGEHYLYQLMGCRVTLADGTDVGVLEH 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ G I N ++P VL+V+L I+IDP A L+ P
Sbjct: 124 FFETGEQDTWVIINEAGTEIMLPAVPEFVLDVDLDAGVIVIDPPAGLLDLYLNPEPPRAK 183
Query: 182 PLDSAGKKS 190
P KS
Sbjct: 184 PARPERAKS 192
>gi|229549757|ref|ZP_04438482.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29200]
gi|255972453|ref|ZP_05423039.1| 16S rRNA processing protein RimM [Enterococcus faecalis T1]
gi|257087114|ref|ZP_05581475.1| 16S rRNA processing protein RimM [Enterococcus faecalis D6]
gi|312950936|ref|ZP_07769846.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0102]
gi|229305026|gb|EEN71022.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29200]
gi|255963471|gb|EET95947.1| 16S rRNA processing protein RimM [Enterococcus faecalis T1]
gi|256995144|gb|EEU82446.1| 16S rRNA processing protein RimM [Enterococcus faecalis D6]
gi|310631085|gb|EFQ14368.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0102]
gi|315025913|gb|EFT37845.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2137]
gi|315147568|gb|EFT91584.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4244]
gi|315152221|gb|EFT96237.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0031]
gi|315159820|gb|EFU03837.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0312]
Length = 174
Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNK 58
+ + + I T G+ GEV + S + P + +L+ + +++ +RK+K
Sbjct: 1 MTDYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQEKKAPIELVVESHRKHK 60
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F I +F G NI+ + RD L + + EL EDEF+ + +D G G
Sbjct: 61 NFDILSFEGHPNINDVEKYRDGILKVAKDNLA--ELGEDEFYYHQIIGATVYDETGSELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA + ++ +K L+P+ + V +V+++ +I +D +++
Sbjct: 119 KIKEILSPGANDVWVVQRPKKKDLLLPYIEGVVTKVDVENQRIDVDIPEGLIDDE 173
>gi|314936599|ref|ZP_07843946.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
gi|313655218|gb|EFS18963.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
Length = 166
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVL--YSNDNRELRILKMYRKNKRFIA 62
V + I THG+ GEV + S + + ++ + ++ E+ I +
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLIVNHHHNEIEMTITSYRIHKGFHML 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F GI++I+ + + L+ +R D +D EL E+EF+ +D+ F+ G+V +
Sbjct: 63 KFEGINHINDVEQYKGDYLFQER-DHEDIELNENEFYYSDIIGCTVFNND-TPIGRVINI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K +LIP+ V EV+++ I I + L
Sbjct: 121 FETGANDVWVVK--GDKEYLIPYIADVVKEVDVEHKTIRITSMEGLLE 166
>gi|254519210|ref|ZP_05131266.1| ribosome maturation factor rimM [Clostridium sp. 7_2_43FAA]
gi|226912959|gb|EEH98160.1| ribosome maturation factor rimM [Clostridium sp. 7_2_43FAA]
Length = 165
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ ++ + I THGL GEV + + ++P N D E +I + R I
Sbjct: 1 MRDILRVGKIVNTHGLKGEVKVIALTDDPKRYNDLDFVLIDGVERKIQGCKFQKDRVIVK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A + ++ + R+ LEED ++ D+ +D +GK G+V V
Sbjct: 61 IEGIDSIEEAEKYKNKYMEIPRE--YAVPLEEDTYYIADIIGCNVYDTEGKSLGEVYDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ I+ K LIP V +++++ KI I P+ +
Sbjct: 119 QTKNNDVYWIRKP--KELLIPVLLDIVTDIDVENRKITIKPVGEWQDED 165
>gi|134299898|ref|YP_001113394.1| 16S rRNA processing protein RimM [Desulfotomaculum reducens MI-1]
gi|172044314|sp|A4J666|RIMM_DESRM RecName: Full=Ribosome maturation factor rimM
gi|134052598|gb|ABO50569.1| 16S rRNA processing protein RimM [Desulfotomaculum reducens MI-1]
Length = 169
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
++ + + + T G+ GEV I + P + VL R+ I +++ +
Sbjct: 3 EEYITVGKVVNTQGIQGEVRIIPTTDFPERFVKNDKISVLLRGQRRDYTIERVWEHKQFI 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I FS I ++ +A +L+ L ++ L E ++ + ++ D + G V
Sbjct: 63 IIKFSEIPDMTAAEKLKGGLLQVTMEEL--VPLPEGNYYIFQIVGLKVVDENEQELGTVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +K + K LIP K V E+N+ E K+ ++ + +
Sbjct: 121 QVLQTGANDVYVVKRSEGKDILIPAIKSVVKEINITEGKMKVELLEGLI 169
>gi|294500957|ref|YP_003564657.1| 16S rRNA processing protein RimM [Bacillus megaterium QM B1551]
gi|295706303|ref|YP_003599378.1| 16S rRNA processing protein RimM [Bacillus megaterium DSM 319]
gi|294350894|gb|ADE71223.1| 16S rRNA processing protein RimM [Bacillus megaterium QM B1551]
gi|294803962|gb|ADF41028.1| 16S rRNA processing protein RimM [Bacillus megaterium DSM 319]
Length = 170
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 10/172 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-------YVLYSNDNRELRILKMYRKNK 58
K + I THG+ GEV I S + + + ++ E+ + R
Sbjct: 2 KWFKVGKIVNTHGVKGEVRIVSTTDFADERYEKGNKLYIFKEKQSEPVEVTVASHRRHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF G N++ + ++ ++ + D LE+ EF+ ++ G G
Sbjct: 62 FDLLTFEGYQNVNDVEQYKNCEVKIPEEQLTD--LEDGEFYFHEIIGCTVKTEDGVEVGT 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + GA + +K K LIP+ V +++ E +I+I + L+
Sbjct: 120 VKEILTPGANDVWVVK-KGGKEVLIPYIDDVVQSIDIDEKEIVITVMEGLLD 170
>gi|117620610|ref|YP_855209.1| 16S rRNA-processing protein RimM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|171855192|sp|A0KG24|RIMM_AERHH RecName: Full=Ribosome maturation factor rimM
gi|117562017|gb|ABK38965.1| 16S rRNA processing protein RimM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 173
Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ + + Y + + RE+++ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWLINQNGVWREIQVSSWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKLDGIDVREDALALTNVEIGVAADLLPA--LPEGEFYWRDLIGCSVVTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF + + ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKNIDLTARTIEVDWDPG 172
>gi|221134434|ref|ZP_03560739.1| 16S rRNA processing protein RimM [Glaciecola sp. HTCC2999]
Length = 173
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-NDNRELRILKMYRKNKR 59
M + + V++ IG +G+ G V I+SY + + YV + + ++ + +
Sbjct: 1 MSRASETVIIGKIGAPYGVKGWVKINSYTDEKAGIFDYVPWIIGAGQHFQVAQWRTHSNS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A GID+ SA +++L + + EL +DEF+ DL M+ +G G +
Sbjct: 61 LVAKLEGIDDRDSAERIKNLDIAIESSQLP--ELSDDEFYWRDLMGMQVVTEKGYSLGTI 118
Query: 120 CGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
++ GA ++ IK +K ++P V +++ I +D A
Sbjct: 119 KEIFATGANDVMLIKANTNDAFGQKERMLPILFDQVVKQIDKPSATITVDWDPA 172
>gi|148549464|ref|YP_001269566.1| 16S rRNA-processing protein RimM [Pseudomonas putida F1]
gi|166226468|sp|A5W8C2|RIMM_PSEP1 RecName: Full=Ribosome maturation factor rimM
gi|148513522|gb|ABQ80382.1| 16S rRNA processing protein RimM [Pseudomonas putida F1]
Length = 178
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIPRSLLPN--LAADEYYWYQLVGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K + L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHMLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLEAGVMRVE 173
>gi|255262386|ref|ZP_05341728.1| 16S rRNA processing protein RimM [Thalassiobium sp. R2A62]
gi|255104721|gb|EET47395.1| 16S rRNA processing protein RimM [Thalassiobium sp. R2A62]
Length = 168
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRFI 61
+ + + T+G + G+ GEV + S+ +P D+ Y + + + R F
Sbjct: 1 MSDKITIGTLGGSFGVKGEVRLKSFCADPQDIEAYSPLTTPDGVAFDGLTLTGRLKNGFS 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G++ A LR +L R + L +DE++ TDL +E D G G V
Sbjct: 61 ARLLGVETKEQADALRGTELQVDRDAMPN--LPDDEYYYTDLMGLEVRDTGGTVLGTVKS 118
Query: 122 VYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V N GA +LE+ +T +T L+PFT +V V+L +I+ DP +
Sbjct: 119 VQNHGATDLLEVLPSTGGETILLPFTMTSVPTVDLTAGRIIADPPDGLFD 168
>gi|241889523|ref|ZP_04776822.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
gi|241863830|gb|EER68213.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
Length = 169
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDN---RELRILKMYRKNKRFI 61
+ + I TH L GEV + S + + +L + N +E+ + +
Sbjct: 3 LKVGKIVNTHSLKGEVKVISSTDFEEQRFKKGSELLITRGNQVVKEVVVESYRTHKNNLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID I A + ++L++ + ELEE+EF+ ++ + FD K G++
Sbjct: 63 VKFVGIDTIEEAEKFKNLQIKIDSDNI--GELEENEFYFHEIIGCKVFDENNKILGEIAE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + IK K LIP+ + V ++++ +I I+ + ++
Sbjct: 121 ILTPGANDVWVIKAETGKEILIPYIEDVVKKIDVTNKRIDIEVMEGLID 169
>gi|261408020|ref|YP_003244261.1| 16S rRNA processing protein RimM [Paenibacillus sp. Y412MC10]
gi|329929602|ref|ZP_08283309.1| 16S rRNA processing protein RimM [Paenibacillus sp. HGF5]
gi|261284483|gb|ACX66454.1| 16S rRNA processing protein RimM [Paenibacillus sp. Y412MC10]
gi|328936247|gb|EGG32699.1| 16S rRNA processing protein RimM [Paenibacillus sp. HGF5]
Length = 173
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 10/173 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKNK 58
+KL + I THG+ GEV + + + V + E+ +
Sbjct: 3 EKLYTVGKIVNTHGIRGEVKVMPHTDFADQRFAAKSKLYIVPDKGNKIEVTVETSRFHKN 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYW 116
++ F + I+ A + + L EEL E+E++ ++ + + +
Sbjct: 63 MYVLKFKELHGINEAEKYKGSLLKITED--LQEELPENEYYFHEIIGCKVMTDEEPAEEL 120
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + GA + +K K L+P VL+V+ + + + + L
Sbjct: 121 GTISEILTPGANDVWVVKTPKGKEILLPAIPDVVLDVDKESKLVRVHLMEGLL 173
>gi|290957098|ref|YP_003488280.1| 16S rRNA processing protein [Streptomyces scabiei 87.22]
gi|260646624|emb|CBG69721.1| putative 16S rRNA processing protein [Streptomyces scabiei 87.22]
Length = 195
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLLTDPASTGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + + A LR+ L D ++ EEDE+++ L +++ R G G++ +
Sbjct: 63 FEGVRDRNGAEALRNT-LLIAEVDPEELPEEEDEYYDHQLMDLDVVTRDGLEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ +IPF + V E++L E + +IDP +++ D
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVESIVTEIDLTEQRAVIDPPPGLIDDRAEIASARDAAE 181
Query: 184 ----DSAGKKS 190
DSAG
Sbjct: 182 ESTTDSAGPAG 192
>gi|300783879|ref|YP_003764170.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
gi|299793393|gb|ADJ43768.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
Length = 170
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFI 61
V++ I HG+ GE+ +D ++P + L REL I + R +
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPEQRFKIGAAVTTKLRDGSKRELTIAAAREHSGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + A LR L A E + DEF++ +L + G G+V
Sbjct: 63 VRFEEVLTRDVAETLRGALLLADTATLPPTE-DPDEFYDHELAGLRAELTDGTVVGKVVE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + AG +LE+ + + L+PF V V++ ++++DP L+
Sbjct: 122 IVHSPAGELLEL-DVEGREVLVPFVHAIVPTVDIAGGRVVLDPPEGLLDE 170
>gi|26988196|ref|NP_743621.1| 16S rRNA-processing protein RimM [Pseudomonas putida KT2440]
gi|37999637|sp|Q88MV5|RIMM_PSEPK RecName: Full=Ribosome maturation factor rimM
gi|24982933|gb|AAN67085.1|AE016337_8 16S rRNA processing protein RimM [Pseudomonas putida KT2440]
gi|313500312|gb|ADR61678.1| RimM [Pseudomonas putida BIRD-1]
Length = 178
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIPRSLLPN--LAADEYYWYQLVGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K + L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLEAGVMRVE 173
>gi|330831189|ref|YP_004394141.1| ribosome maturation factor rimM [Aeromonas veronii B565]
gi|328806325|gb|AEB51524.1| Ribosome maturation factor rimM [Aeromonas veronii B565]
Length = 173
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ + + Y + + RE+R+ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWLINQNGAWREIRVSSWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKLDGIDVREDALALTNVEIGVPADLLPA--LPEGEFYWRDLIGCSVVTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF + + ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKNIDLTVRTIEVDWDPG 172
>gi|15598939|ref|NP_252433.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAO1]
gi|14423891|sp|Q9HXQ0|RIMM_PSEAE RecName: Full=Ribosome maturation factor rimM
gi|9949912|gb|AAG07131.1|AE004793_8 16S rRNA processing protein [Pseudomonas aeruginosa PAO1]
Length = 175
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELPS--LEEGEYYWHQLEGLKVIDQGRQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|156975744|ref|YP_001446651.1| 16S rRNA-processing protein [Vibrio harveyi ATCC BAA-1116]
gi|166226487|sp|A7MYV0|RIMM_VIBHB RecName: Full=Ribosome maturation factor rimM
gi|156527338|gb|ABU72424.1| hypothetical protein VIBHAR_03479 [Vibrio harveyi ATCC BAA-1116]
Length = 182
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
++ +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 NEKIVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWFINQKGTWVEYKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A L + ++ EL EDEF+ +L M+ +G G V
Sbjct: 71 VAKLEGLDIREDAHLLTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + +++V+ + +I +D
Sbjct: 129 DILETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVDWDPG 181
>gi|210622536|ref|ZP_03293229.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
gi|210154171|gb|EEA85177.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
Length = 172
Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ I T GL G+V + ++ L + + + + + K I G
Sbjct: 10 VGKIVKTQGLKGDVRVYPTTDDIYRFDYLEEFYVGKDRENPWEVEDVRYKGNLVIMKIKG 69
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
ID + A +L +Y R + ELEE EFF D+ M+ + G+ G + V +
Sbjct: 70 IDRVEEAEKLVGKDIYVSRDE--SFELEEGEFFIADMIGMDVYTVSGEKVGVLKEVLQYS 127
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
A + IKN K +LIP V E++++E+K++IDPI L++
Sbjct: 128 ANDVYVIKNEEGKEYLIPAVMKFVPEIDIEEDKMIIDPIKGMLDD 172
>gi|49081574|gb|AAT50187.1| PA3744 [synthetic construct]
Length = 176
Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 66 AAKLKGLDDREEARTFTGYEICIPRSELPS--LEEGEYYWHQLEGLKVIDQGRQLLGVID 123
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 124 HLLETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 170
>gi|220922841|ref|YP_002498143.1| 16S rRNA-processing protein RimM [Methylobacterium nodulans ORS
2060]
gi|254797756|sp|B8IGW5|RIMM_METNO RecName: Full=Ribosome maturation factor rimM
gi|219947448|gb|ACL57840.1| 16S rRNA processing protein RimM [Methylobacterium nodulans ORS
2060]
Length = 204
Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYRKNK---RFIA 62
VL+ G HGL GEV + SY +P+ + Y + + R + + + + IA
Sbjct: 27 FVLLGEFGRAHGLQGEVRLKSYTADPMAIGSYGPLTGANGRAIALTALRPASGAPDMLIA 86
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
SG+ +A L L LY +R+ E +EDEFF+ DL + D G G + V
Sbjct: 87 RVSGVSGRDAAEALNRLALYVRRECLGAPE-DEDEFFSADLIGLAVVDAAGTRLGTIRAV 145
Query: 123 YNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
N+G G +LEI+ T L+PFT+ V +V++ ++ IDP + P
Sbjct: 146 PNYGGGDLLEIEPTGGGAAALLPFTRAFVPKVDIAAREVTIDPP------DDLFAPAKPS 199
Query: 182 PLDS 185
P D
Sbjct: 200 PEDE 203
>gi|117928766|ref|YP_873317.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
gi|171460818|sp|A0LV71|RIMM_ACIC1 RecName: Full=Ribosome maturation factor rimM
gi|117649229|gb|ABK53331.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
Length = 176
Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
V + I HG++GEV + ++P VL ++ L + + + R + F+
Sbjct: 12 VAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGAVLTTDTGVTLTVQRTRWHSGRLLVRFA 71
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID+ +A +LR L+A+ + E E E+++ L M G+ G V V +
Sbjct: 72 GIDDRTTAEDLRGRVLFAEVDERVRPEDPE-EYYDYQLIGMRVETVTGQEIGVVREVLHL 130
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+L I+ + + +PF V EV++ + ++ IDP L
Sbjct: 131 PGQDVLAIERSADGDAFVPFVAALVPEVDVDQRRLRIDPPPGLLE 175
>gi|319950997|ref|ZP_08024867.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
gi|319435340|gb|EFV90590.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
Length = 177
Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND---------NRELRILKMYRKNK 58
+++ + +HG+ GE+ ++ ++P + +R++ + +
Sbjct: 3 LVVGRVVKSHGVRGELVVEVRTDSPEERFAPGARLTGRVGKGDRATDRDVTVEAARSHSG 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + +G+ + +A LR + L + D E + DE+ + L + D G G+
Sbjct: 63 RLLVRLAGVSDRDTADALRGMLLLVDSAELPDPE-DPDEYHDHQLVGLRVLDTSGAPLGE 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + + AG +L I+ T L+PF V EV++ +IDP L+
Sbjct: 122 VTEIVHTPAGELLGIRLTDGADALVPFVTEMVPEVDVPGGTCVIDPPEGLLD 173
>gi|120599792|ref|YP_964366.1| 16S rRNA-processing protein RimM [Shewanella sp. W3-18-1]
gi|146292272|ref|YP_001182696.1| 16S rRNA-processing protein RimM [Shewanella putrefaciens CN-32]
gi|171704633|sp|A1RMB7|RIMM_SHESW RecName: Full=Ribosome maturation factor rimM
gi|172046867|sp|A4Y4L4|RIMM_SHEPC RecName: Full=Ribosome maturation factor rimM
gi|120559885|gb|ABM25812.1| 16S rRNA processing protein RimM [Shewanella sp. W3-18-1]
gi|145563962|gb|ABP74897.1| 16S rRNA processing protein RimM [Shewanella putrefaciens CN-32]
gi|319425571|gb|ADV53645.1| 16S rRNA processing protein RimM [Shewanella putrefaciens 200]
Length = 176
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G+ HG+ G + I +Y ++ + Y + + + RE+++ + +
Sbjct: 1 MSSNQQPVVLGKLGSCHGIKGWLRITAYTDSVEGIFDYSPWLIKENGEWREVKVTQWRYQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G++ A L + ++ + + L EDEF+ DL E + G
Sbjct: 61 GKAVVAELEGVNTREQAQMLTNCEIAILPEQM--DALPEDEFYWRDLIGCEVVNTTGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K + +IPF + + V++Q +IL+D
Sbjct: 119 GIVDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTVDVQGKQILVD 171
>gi|296330817|ref|ZP_06873292.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674335|ref|YP_003866007.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151822|gb|EFG92696.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412579|gb|ADM37698.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 174
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M K + + I THG+ GEV + S + + + Y+ N + + + +
Sbjct: 1 MTK--RWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGSNEPVEVTVNTH 58
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K+F + F +++ +L++ + +D EL E EF+ ++ E F G
Sbjct: 59 RLHKQFHLLQFKERQSLNEVEKLKNAIIKVPEEDL--GELNEGEFYFHEIIGCEVFTEDG 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ G+V + GA + I +K LIP+ + V +++ E KI I+ + ++
Sbjct: 117 ELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKYIDVSEKKIEIELMEGLIDE 174
>gi|75481545|sp|Q57L30|RIMM_SALCH RecName: Full=Ribosome maturation factor rimM
gi|62128879|gb|AAX66582.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 183
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y+ + + +++++ N+ I
Sbjct: 13 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYLPWFIQKAGQWQQVQLESWKHHNQDLI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|330504638|ref|YP_004381507.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
gi|328918924|gb|AEB59755.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
Length = 178
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
+ L+++ I + HG+ GEV + S+ + N +D + L + +++ + + K
Sbjct: 9 EDLIVLGKIVSVHGVRGEVKVYSFTDPIDNVLDYQNWTLKRDGEVKKVELASGRLQGKVL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+D+ A ++ R + D LEE EF+ L+ ++ D+ G+ G V
Sbjct: 69 VVKLKGLDDREIARTYAGFEICVPRSELPD--LEEGEFYWYQLQGLKVIDQAGQLLGVVD 126
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
++ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 127 HLFETGANDVMVVKACAGSLDDRERLLPYTDQCVLSIDLAAGEMRVD 173
>gi|254393818|ref|ZP_05008930.1| 16S rRNA processing protein [Streptomyces clavuligerus ATCC 27064]
gi|326443724|ref|ZP_08218458.1| 16S rRNA-processing protein RimM [Streptomyces clavuligerus ATCC
27064]
gi|197707417|gb|EDY53229.1| 16S rRNA processing protein [Streptomyces clavuligerus ATCC 27064]
Length = 219
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++ IG HG+ GEV ++ + P L + D L I + R +
Sbjct: 3 LVVGRIGRAHGVKGEVSVEVRTDEPELRLGPGAVLLTDPPARGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + + A LR+ L A E + DE+++ L +++ G G++ +
Sbjct: 63 FAGVRDRNGAEALRETLLIADVDPEASPEGD-DEYYDHQLIDLDVVTVDGTEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + + ++ +IPF V ++L+E + +IDP +++
Sbjct: 122 HLPSQDLFIVERPDGTEVMIPFVTEIVTSIDLEEQRAVIDPPPGLIDD 169
>gi|325273827|ref|ZP_08140012.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
gi|324101033|gb|EGB98694.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
Length = 178
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGYEICIARSLLPN--LAADEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K + L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAIDLEAGTMRVE 173
>gi|51892607|ref|YP_075298.1| 16S rRNA processing protein [Symbiobacterium thermophilum IAM
14863]
gi|59798669|sp|Q67PD9|RIMM_SYMTH RecName: Full=Ribosome maturation factor rimM
gi|51856296|dbj|BAD40454.1| 16S rRNA processing protein [Symbiobacterium thermophilum IAM
14863]
Length = 174
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 5/169 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR--KNKRFIAT 63
L+ + + HG+ G V + + P D + + +R I
Sbjct: 8 DLIRIGQVTAPHGVRGAVRVYPTTDFPERFVTLKRVMIDGPDRAVGARFRGFVKNLVILE 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI + + A LR L R++ L E +++ D+ +E D G+ G+V V
Sbjct: 68 LEGITDRNQAERLRGADLLVPREEV--HPLPEGYYYDFDIIGIEVVDPDGRQLGRVVEVD 125
Query: 124 NF-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + ++ K +L+P + V E++L+ +++IDPI L +
Sbjct: 126 HTSPVHDLYVVETAPGKRYLVPAVRRFVKEIDLETGRMVIDPIPGLLED 174
>gi|322418206|ref|YP_004197429.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
gi|320124593|gb|ADW12153.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
Length = 172
Score = 173 bits (441), Expect = 8e-42, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDN--RELRILKMYRKNKR 59
K VL+ I HG+ G++ + +A + LN L S E ++ KR
Sbjct: 4 SKKVLIGKIQGPHGIRGQLRVIPFAGDASSISQLNSVFLKSPKGAMEEYSVVSAKNNGKR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I T DNI+ L ++YA R D L +DEF+ +DL ++ G+ G++
Sbjct: 64 IILTLKPFDNINQVLHLVGSEIYADRVALPD--LPDDEFYWSDLLGLQVVTSDGEELGEL 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ + +K+ + LIP + VL V+L E ++ + L+
Sbjct: 122 VDIIETGSNDVYVVKHN-GREVLIPALEDVVLSVDLAEGRMTVSLPEGLLD 171
>gi|313632802|gb|EFR99758.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL N1-067]
Length = 172
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIEVMEGLLD 172
>gi|162139559|ref|YP_217663.2| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715732|gb|EFZ07303.1| Ribosome maturation factor rimM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 182
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y+ + + +++++ N+ I
Sbjct: 12 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYLPWFIQKAGQWQQVQLESWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 181
>gi|312869889|ref|ZP_07730028.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
gi|311094474|gb|EFQ52779.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
Length = 168
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + I THG+ GEV + + + Y+ + EL I + +
Sbjct: 2 QFYNVGKIVNTHGIRGEVRVLPTTDFVDERFAPQQKLYLQGTGAPVELTIERSRQHKGFI 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G DNI+ R+ +L D + LE+ +++ + + G+ G+V
Sbjct: 62 LVKFVGYDNINDVESFRNHELMVSAAD--QQPLEDGQYYYHQIIGLTVKTVAGEELGKVK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + ++ + L+P V +V+L ++L++ +
Sbjct: 120 EILAPGANDVWVVERPGKADLLLPVIDDVVKQVDLDNGQVLVELMEGL 167
>gi|146308419|ref|YP_001188884.1| 16S rRNA-processing protein [Pseudomonas mendocina ymp]
gi|166226467|sp|A4XXT6|RIMM_PSEMY RecName: Full=Ribosome maturation factor rimM
gi|145576620|gb|ABP86152.1| 16S rRNA processing protein RimM [Pseudomonas mendocina ymp]
Length = 178
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
+ L+++ I + HG+ GEV + S+ + N +D + L + +++ + + K
Sbjct: 9 EDLIVLGKIVSVHGVRGEVKVYSFTDPIDNVLDYRHWTLRRDGEVKKVELASGRLQGKVL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A ++ R + D LEE EF+ L+ ++ D+ G+ G V
Sbjct: 69 VAKLKGLDDREIARTYAGFEICVPRSELPD--LEEGEFYWYQLQGLKVIDQAGQLLGVVD 126
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
++ GA ++ +K + L+P+T VL ++L ++ +D
Sbjct: 127 HLFETGANDVMVVKACAGSLDDRERLLPYTDQCVLSIDLAAGEMRVD 173
>gi|257886946|ref|ZP_05666599.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257898133|ref|ZP_05677786.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
gi|257823000|gb|EEV49932.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257836045|gb|EEV61119.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
Length = 174
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 75/175 (42%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPVELTVKSHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ + RD L + + +L E+EF+ ++ + + G G
Sbjct: 61 NFDLLSFEGHPSINDVEKYRDGILKVSKDN--SVDLAENEFYYHEIIGLRVVEEDGTELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ + L+P+ V EV+L+ + ++ +++
Sbjct: 119 KVKEILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVEIPEGLIDDE 173
>gi|302542207|ref|ZP_07294549.1| 16S rRNA processing protein RimM [Streptomyces hygroscopicus ATCC
53653]
gi|302459825|gb|EFL22918.1| 16S rRNA processing protein RimM [Streptomyces himastatinicus ATCC
53653]
Length = 191
Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 5/182 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L I + R +
Sbjct: 11 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPASAGPLTIETGRVHSGRLLLR 70
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR++ L D ++ + +EF++ L +++ G G++ +
Sbjct: 71 FEGVRDRTGAEALRNV-LLIAEVDPEEVPEDPEEFYDHQLIDLDVVTVDGTAVGRISEIS 129
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ +L +K +IPF V E++L+E + ++DP L+ +
Sbjct: 130 HLPYQDLLIVKRPDGGEVMIPFVSEMVPEIDLEEQRAVVDPPPGLLDEAEAEVATGREET 189
Query: 184 DS 185
S
Sbjct: 190 PS 191
>gi|229541112|ref|ZP_04430172.1| 16S rRNA processing protein RimM [Bacillus coagulans 36D1]
gi|229325532|gb|EEN91207.1| 16S rRNA processing protein RimM [Bacillus coagulans 36D1]
Length = 172
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-------YVLYSNDNRELRILKMYRK 56
+ + + I THG+ GEV + S + + + ++ ++ + I
Sbjct: 1 MTQWFNVGKIVNTHGIRGEVRVISQTDFKAERYKPGNTLYLFLPGRDEPLAVTIESHRVH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + F G D+I A + + L + +EL E+EF+ ++ E G+
Sbjct: 61 KQFDLLKFEGFDSIEEAEKWKGGMLKVSEEQL--DELGENEFYFHEIIGCEVVTTAGEKV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V + GA + +K +K LIP+ + V +V+ +E +I+I+P+ L
Sbjct: 119 GTVKEILTPGANDVWVVKTAQQKEALIPYIEDVVKKVDKKEKRIVIEPMEGLL 171
>gi|296104278|ref|YP_003614424.1| 16S rRNA-processing protein RimM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058737|gb|ADF63475.1| 16S rRNA-processing protein RimM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 179
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+ +G+ G + + S + + Y + E+ + N+ I
Sbjct: 9 EPIVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKGGKWEEVELESWRHHNQDII 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V
Sbjct: 69 IKLKGVDDRDAANALTNCEIVVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVID 126
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 127 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATQTIEVDWDPG 178
>gi|302522159|ref|ZP_07274501.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB78]
gi|302431054|gb|EFL02870.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB78]
Length = 236
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L D ++ + +EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNT-LLIAETDPEEVPEDPEEFYDYQLMDLDVVTEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
+ + + ++ +IPF + V E++L E + +I+P L+ + + +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINPPPGLLDLDEADVASERETS 181
Query: 183 LDSAGKKS 190
G
Sbjct: 182 RTETGAAP 189
>gi|74318392|ref|YP_316132.1| 16S rRNA processing protein RimM [Thiobacillus denitrificans ATCC
25259]
gi|109893066|sp|Q3SGC3|RIMM_THIDA RecName: Full=Ribosome maturation factor rimM
gi|74057887|gb|AAZ98327.1| 16S rRNA processing protein RimM [Thiobacillus denitrificans ATCC
25259]
Length = 189
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKRF 60
+ V+M + G+ G V + ++ +P +D + + + + + + + K
Sbjct: 26 EAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQDHGKSL 85
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A GID+ +A LR ++ + E E+EF+ +DL + +R+G G+V
Sbjct: 86 VAKLVGIDDRDAAFALRGQEVSVAKSALPPPE--ENEFYWSDLIGLTVMNREGVELGKVD 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K + LIPF V +V+L + +D
Sbjct: 144 SLMESGAHDLLVVK--GRREHLIPFVAAFVGKVDLAGGTVEVD 184
>gi|154251873|ref|YP_001412697.1| 16S rRNA-processing protein RimM [Parvibaculum lavamentivorans
DS-1]
gi|171769584|sp|A7HT07|RIMM_PARL1 RecName: Full=Ribosome maturation factor rimM
gi|154155823|gb|ABS63040.1| 16S rRNA processing protein RimM [Parvibaculum lavamentivorans
DS-1]
Length = 188
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 3/175 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIA 62
DK V + + HG+ G V + Y P + Y + I I
Sbjct: 11 DKKVCLGVVTGAHGVRGLVRVKPYTEMPEGVAAYGPVETKDGATSFAISLKGMAKDLVIC 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+D+ A+ LR +LY R+ +E+ ++ DL + G+ +G++ GV
Sbjct: 71 KLEGVDDRDVAAALRGTELYVPRERLPRASGDEEGWYYADLIGLRAVGLDGRDYGRIAGV 130
Query: 123 YNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
NFGAG +LEI +T L+ FT V EV++ +++IDP A +
Sbjct: 131 ENFGAGDLLEIAPAEGGQTVLMGFTDENVPEVDIAGGRVVIDPPAGTFGDDAEAE 185
>gi|330894532|gb|EGH27193.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. mori
str. 301020]
Length = 179
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++L ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVEKQLELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVAKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|331091005|ref|ZP_08339847.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405227|gb|EGG84763.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
2_1_46FAA]
Length = 168
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 82/169 (48%), Gaps = 6/169 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE---LRILKMYRKNKR 59
+++L+ + I +THG+ GEV + ++ + + + RE L + + +
Sbjct: 1 MEQLLQVGIISSTHGVRGEVKVFPTTDDINRFKKLKQVILDTGREKMVLEVQGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GIDNI+ + + L+ R+ +L+++E+F D+ M + + +++G +
Sbjct: 61 AILKFKGIDNINDIEKYKGKSLFVDREH--AVKLKKNEYFIADMIGMNVYTEEDEFFGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + I + L+P + +L V+++++K++I +
Sbjct: 119 KDVIETGANDVYVISSEKHGEVLVPAIRQCILNVDIEKSKMVIHLLEGL 167
>gi|302865889|ref|YP_003834526.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
gi|302568748|gb|ADL44950.1| 16S rRNA processing protein RimM [Micromonospora aurantiaca ATCC
27029]
Length = 179
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR-------------ELRILK 52
L+++ IG HG+ GEV ++ + P + + + L +
Sbjct: 2 LLVVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVES 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + F G+ A LR+ L D E E EF + L + R
Sbjct: 62 ARWHQGRLLVAFEGVLERDVAEALRNTLLGVDSADVAPPEDPE-EFHDHQLVGLTVVTRD 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G+V + + A +L ++ +T L+PF K V EV+L ++++D L+
Sbjct: 121 GEHVGEVARIDHAPASEMLVLRRPEGRTALVPFVKAIVPEVDLAGGRVVVDLPGGLLD 178
>gi|224824769|ref|ZP_03697876.1| 16S rRNA processing protein RimM [Lutiella nitroferrum 2002]
gi|224603262|gb|EEG09438.1| 16S rRNA processing protein RimM [Lutiella nitroferrum 2002]
Length = 168
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D LVLM + G+ G V I + + L Y ++ R + K
Sbjct: 4 DDLVLMGYVRGAFGVRGWVKIHADTGSADSLFDYPVWWLGRDGQWSSYRFEDGLVQPKAL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+ + +A +R +++ R +F E +DE++ +DL ++ ++ G+ +GQV
Sbjct: 64 AAKLEGVGSREAAEAMRGMQIAIPRSEFP--ETADDEYYWSDLIGLDVVNKDGQRFGQVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L ++ ++ +LIPF VL+VNL + +I +D
Sbjct: 122 ELMETGANDVLVVR-EGKREWLIPFVGQFVLDVNLTDKRITVD 163
>gi|168262153|ref|ZP_02684126.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464152|ref|ZP_02698069.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194445761|ref|YP_002041938.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448986|ref|YP_002046680.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470975|ref|ZP_03076959.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735018|ref|YP_002115685.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197247653|ref|YP_002147611.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262483|ref|ZP_03162557.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197301201|ref|ZP_03166323.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|198245720|ref|YP_002216685.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388134|ref|ZP_03214746.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929602|ref|ZP_03220676.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205357377|ref|ZP_02347273.2| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205357811|ref|ZP_03223844.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205358802|ref|ZP_03224142.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205359386|ref|ZP_03224284.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|213424864|ref|ZP_03357614.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|289806537|ref|ZP_06537166.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|194404424|gb|ACF64646.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407290|gb|ACF67509.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457339|gb|EDX46178.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194710520|gb|ACF89741.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633267|gb|EDX51681.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197211356|gb|ACH48753.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240738|gb|EDY23358.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197287839|gb|EDY27227.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197940236|gb|ACH77569.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605232|gb|EDZ03777.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321321|gb|EDZ06521.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205322055|gb|EDZ09894.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205329278|gb|EDZ16042.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331817|gb|EDZ18581.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336450|gb|EDZ23214.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205349285|gb|EDZ35916.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|321223466|gb|EFX48531.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614477|gb|EFY11408.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322662636|gb|EFY58844.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|323131019|gb|ADX18449.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323221545|gb|EGA05958.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323234696|gb|EGA18782.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323253267|gb|EGA37097.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257063|gb|EGA40772.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323269614|gb|EGA53067.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 183
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|91228774|ref|ZP_01262684.1| 16S rRNA-processing protein [Vibrio alginolyticus 12G01]
gi|262393310|ref|YP_003285164.1| 16S rRNA processing protein RimM [Vibrio sp. Ex25]
gi|269966293|ref|ZP_06180381.1| 16S rRNA-processing protein [Vibrio alginolyticus 40B]
gi|91187681|gb|EAS74003.1| 16S rRNA-processing protein [Vibrio alginolyticus 12G01]
gi|262336904|gb|ACY50699.1| 16S rRNA processing protein RimM [Vibrio sp. Ex25]
gi|269829090|gb|EEZ83336.1| 16S rRNA-processing protein [Vibrio alginolyticus 40B]
Length = 182
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
++ +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 NEKIVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYINQKGKWVEYKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A + + ++ EL EDEF+ +L M+ +G G V
Sbjct: 71 VAKLEGMDVREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVT 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + ++ V+ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIINVDREAQRIEVDWDPG 181
>gi|59711157|ref|YP_203933.1| 16S rRNA-processing protein [Vibrio fischeri ES114]
gi|75354502|sp|Q5E7F1|RIMM_VIBF1 RecName: Full=Ribosome maturation factor rimM
gi|59479258|gb|AAW85045.1| 16S rRNA processing protein [Vibrio fischeri ES114]
Length = 175
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K D+++++ G ++G+ G + + S+ + P + Y + + E + R
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + G+D A +L++ K EL EDEF+ +L ME +G
Sbjct: 61 -KGLVCKLKGLDVREEAQTYTNLEIAVKADALP--ELSEDEFYWRELFGMEVVTTKGYAL 117
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILIDPIAA 167
G V ++ G+ +L +K +K LIPF V++ ++ + +I +D
Sbjct: 118 GVVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVDWDPG 174
>gi|269926737|ref|YP_003323360.1| 16S rRNA processing protein RimM [Thermobaculum terrenum ATCC
BAA-798]
gi|269790397|gb|ACZ42538.1| 16S rRNA processing protein RimM [Thermobaculum terrenum ATCC
BAA-798]
Length = 179
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
D V++ I + HG+ GEV ++ +NP + + +++ + K +
Sbjct: 13 PDNYVIVGRILSPHGVRGEVKVEPITDNPERFKQLRQVYVGDALHKVVSVRVLPKFVLVR 72
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+++ A L + LY ++ L ED F++ DL+ ME G+ G + +
Sbjct: 73 FEGMESPEQAKALSGMYLYIPKEQV--MPLPEDTFYHFDLQGMEVVSTSGEPLGTLREIL 130
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
A + + + LIP K V +V+L+ +++++ I L
Sbjct: 131 IREANDVFVVDHPRG-EILIPAIKDVVKDVDLENRRLVVELIPGLL 175
>gi|170723317|ref|YP_001751005.1| 16S rRNA-processing protein RimM [Pseudomonas putida W619]
gi|229564325|sp|B1JDE4|RIMM_PSEPW RecName: Full=Ribosome maturation factor rimM
gi|169761320|gb|ACA74636.1| 16S rRNA processing protein RimM [Pseudomonas putida W619]
Length = 178
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L+ ++ ++ + +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGFEICIPRSLLPN--LAADEYYWYQLQGLKVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K + L+P+T VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTAQCVLAIDLEAGVMRVE 173
>gi|16761528|ref|NP_457145.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765990|ref|NP_461605.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142999|ref|NP_806341.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414640|ref|YP_151715.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161615607|ref|YP_001589572.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197363567|ref|YP_002143204.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|207858023|ref|YP_002244674.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213419596|ref|ZP_03352662.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213581512|ref|ZP_03363338.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622615|ref|ZP_03375398.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647493|ref|ZP_03377546.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|238909518|ref|ZP_04653355.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289824173|ref|ZP_06543768.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|61230458|sp|P0A2B5|RIMM_SALTY RecName: Full=Ribosome maturation factor rimM
gi|61230463|sp|P0A2B6|RIMM_SALTI RecName: Full=Ribosome maturation factor rimM
gi|67461314|sp|Q5PFF7|RIMM_SALPA RecName: Full=Ribosome maturation factor rimM
gi|189040851|sp|A9MZ50|RIMM_SALPB RecName: Full=Ribosome maturation factor rimM
gi|238689950|sp|B5BE93|RIMM_SALPK RecName: Full=Ribosome maturation factor rimM
gi|238690393|sp|B5QUG3|RIMM_SALEP RecName: Full=Ribosome maturation factor rimM
gi|25364905|pir||AG0833 16S rRNA processing protein [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16421221|gb|AAL21564.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503829|emb|CAD05854.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138632|gb|AAO70201.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128897|gb|AAV78403.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161364971|gb|ABX68739.1| hypothetical protein SPAB_03388 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197095044|emb|CAR60590.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|206709826|emb|CAR34178.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247867|emb|CBG25696.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994817|gb|ACY89702.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159235|emb|CBW18750.1| 16S rRNA processing protein rimM. Probable 16S rRNA processing
protein rimM [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913698|dbj|BAJ37672.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087153|emb|CBY96920.1| Ribosome maturation factor rimM [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322621458|gb|EFY18311.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624319|gb|EFY21152.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629382|gb|EFY26160.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633622|gb|EFY30364.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638335|gb|EFY35033.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639773|gb|EFY36456.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647365|gb|EFY43861.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650465|gb|EFY46875.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656042|gb|EFY52342.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661436|gb|EFY57661.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322667009|gb|EFY63184.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671378|gb|EFY67501.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677615|gb|EFY73678.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681559|gb|EFY77589.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683959|gb|EFY79969.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195528|gb|EFZ80706.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197901|gb|EFZ83024.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203079|gb|EFZ88111.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205320|gb|EFZ90295.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210530|gb|EFZ95414.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323218189|gb|EGA02901.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323223765|gb|EGA08070.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230952|gb|EGA15070.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323238735|gb|EGA22785.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241435|gb|EGA25466.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246868|gb|EGA30835.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323260464|gb|EGA44075.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264479|gb|EGA47985.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|326624441|gb|EGE30786.1| 16S rRNA processing protein RimM [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332989599|gb|AEF08582.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 182
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 181
>gi|126173449|ref|YP_001049598.1| 16S rRNA-processing protein RimM [Shewanella baltica OS155]
gi|152999788|ref|YP_001365469.1| 16S rRNA-processing protein RimM [Shewanella baltica OS185]
gi|160874407|ref|YP_001553723.1| 16S rRNA-processing protein RimM [Shewanella baltica OS195]
gi|217974259|ref|YP_002359010.1| 16S rRNA-processing protein RimM [Shewanella baltica OS223]
gi|304409372|ref|ZP_07390992.1| 16S rRNA processing protein RimM [Shewanella baltica OS183]
gi|307303730|ref|ZP_07583483.1| 16S rRNA processing protein RimM [Shewanella baltica BA175]
gi|171704554|sp|A6WKR7|RIMM_SHEB8 RecName: Full=Ribosome maturation factor rimM
gi|171769975|sp|A3D1W6|RIMM_SHEB5 RecName: Full=Ribosome maturation factor rimM
gi|189040852|sp|A9L5P6|RIMM_SHEB9 RecName: Full=Ribosome maturation factor rimM
gi|254797761|sp|B8EBP2|RIMM_SHEB2 RecName: Full=Ribosome maturation factor rimM
gi|125996654|gb|ABN60729.1| 16S rRNA processing protein RimM [Shewanella baltica OS155]
gi|151364406|gb|ABS07406.1| 16S rRNA processing protein RimM [Shewanella baltica OS185]
gi|160859929|gb|ABX48463.1| 16S rRNA processing protein RimM [Shewanella baltica OS195]
gi|217499394|gb|ACK47587.1| 16S rRNA processing protein RimM [Shewanella baltica OS223]
gi|304351890|gb|EFM16288.1| 16S rRNA processing protein RimM [Shewanella baltica OS183]
gi|306912628|gb|EFN43051.1| 16S rRNA processing protein RimM [Shewanella baltica BA175]
gi|315266642|gb|ADT93495.1| 16S rRNA processing protein RimM [Shewanella baltica OS678]
Length = 176
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G+ HG+ G + I +Y ++ + Y + + + RE+++ + +
Sbjct: 1 MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G++ A L + ++ + D L DEF+ DL E + G
Sbjct: 61 GKAVVALLDGVETREQAQMLTNCEIAILPEQMND--LPADEFYWRDLIGCEVVNTTGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K + +IPF + + V+LQ +IL+D
Sbjct: 119 GIVDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTVDLQGKQILVD 171
>gi|297202648|ref|ZP_06920045.1| 16S rRNA processing protein RimM [Streptomyces sviceus ATCC 29083]
gi|197713223|gb|EDY57257.1| 16S rRNA processing protein RimM [Streptomyces sviceus ATCC 29083]
Length = 183
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L D ++ EEDE+++ L +++ G G++ +
Sbjct: 63 FEGVRDRTAAEALRNT-LLIAEVDPEELPEEEDEYYDHQLMDLDVVTEDGVEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + + ++ +IPF + V E++L E K +I P +++ D
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVAEIDLAEQKAVITPPPGLIDDRAEIASSRDSED 181
Query: 184 DS 185
+S
Sbjct: 182 ES 183
>gi|221632147|ref|YP_002521368.1| 16S rRNA processing protein RimM [Thermomicrobium roseum DSM 5159]
gi|221155506|gb|ACM04633.1| 16S rRNA processing protein RimM [Thermomicrobium roseum DSM 5159]
Length = 184
Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + I HG+ G V + + + P + YV + R+L+ +
Sbjct: 19 ERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFLQ 78
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI + A +R + + R L EDE++ ++ ++ D G G+V +
Sbjct: 79 LEGITTRNEAEAMRGVVVRIDRSQ--AAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEIL 136
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
GA + ++ L+P + +L V+L++ ++++ P
Sbjct: 137 ETGANDVYVVQRPDGSELLLPAIRSVILAVDLEQQRLVVRPP 178
>gi|291522196|emb|CBK80489.1| 16S rRNA processing protein RimM [Coprococcus catus GD/7]
Length = 169
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRKNKR 59
++K + + I ++HG+ GE + ++ + D +EL I + +
Sbjct: 1 MEKYLRVGVISSSHGVRGEAKVFPTTDDVQRFKKLKTCILDTGREYKELHIESVKFFKQM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F I +I + + L R +LEE+E+F DL ++ +G+ +G +
Sbjct: 61 VILKFKEIASIDEVMQYKGKDLLVTRDQ--AVKLEENEYFICDLIGLKVVTDEGEDFGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + +K K L+P +L+V+L+ ++ + ++
Sbjct: 119 TDVIQTGANDVYAVKCPNGKEVLLPVIDECILDVDLERQQVTAHIMPGLVD 169
>gi|283786228|ref|YP_003366093.1| 16S rRNA processing protein [Citrobacter rodentium ICC168]
gi|282949682|emb|CBG89301.1| 16S rRNA processing protein [Citrobacter rodentium ICC168]
Length = 182
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWRHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 181
>gi|269961268|ref|ZP_06175635.1| 16S rRNA-processing protein [Vibrio harveyi 1DA3]
gi|269834029|gb|EEZ88121.1| 16S rRNA-processing protein [Vibrio harveyi 1DA3]
Length = 182
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
++ +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 NEKIVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWFINQKGTWVEYKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A + + ++ EL EDEF+ +L M+ +G G V
Sbjct: 71 VAKLEGLDIREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMQVVTTKGYDLGVVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + +++V+ + +I +D
Sbjct: 129 DILETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVDWDPG 181
>gi|119470051|ref|ZP_01612856.1| 16S rRNA processing protein [Alteromonadales bacterium TW-7]
gi|119446761|gb|EAW28034.1| 16S rRNA processing protein [Alteromonadales bacterium TW-7]
Length = 178
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S+ ++P + + + + L ++ R NK FIA
Sbjct: 10 IVVGKLGAPYGIKGWLKVHSFTDDPAGIFDFSPWLIGQQGKWQSLEVVDWRRHNKGFIAK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ +++ A ++ EL + EF+ DL M +G G V +
Sbjct: 70 FAQVNDRDEAMAYTHAEISMDATQLP--ELPQGEFYWRDLIGMSVVTDKGYNLGTVDDLM 127
Query: 124 NFGAGSILEIKNTMEK-----TFLIPF-TKFAVLEVNLQENKILIDPIAA 167
G+ +L +K + LIPF T + +V +I +D
Sbjct: 128 ETGSNDVLVVKANSKDAFGQSERLIPFLTDSVIKDVKYDVKEITVDWDPG 177
>gi|294634742|ref|ZP_06713272.1| 16S rRNA processing protein RimM [Edwardsiella tarda ATCC 23685]
gi|291091841|gb|EFE24402.1| 16S rRNA processing protein RimM [Edwardsiella tarda ATCC 23685]
Length = 181
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+DK V++ +G+ +G+ G + + S + + Y + + + ++
Sbjct: 9 MDKAVILGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQGGKWVAIELESWRNHSQD 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ GID+ +A+ L + ++ LEE +++ DL + G G+V
Sbjct: 69 LVIKIKGIDDRDAANALVNREIAVDESQLPA--LEEGDYYWKDLMGCQVVTVAGYELGKV 126
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ K LIPF + +V+L I +D
Sbjct: 127 TAMMETGSNDVLVVKANLKDAFGIKERLIPFLDGQVIKKVDLTAKSIEVDWDPG 180
>gi|291086323|ref|ZP_06355423.2| 16S rRNA processing protein RimM [Citrobacter youngae ATCC 29220]
gi|291068897|gb|EFE07006.1| 16S rRNA processing protein RimM [Citrobacter youngae ATCC 29220]
Length = 183
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ SA+ L + ++ LEE ++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDSANLLTNCEIVVDSSQLPA--LEEGSYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|205353712|ref|YP_002227513.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|259585651|sp|B5RD84|RIMM_SALG2 RecName: Full=Ribosome maturation factor rimM
gi|205273493|emb|CAR38470.1| 16S rRNA processing protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628818|gb|EGE35161.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 182
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLYGQVIKKVDLATRTIEVDWDPG 181
>gi|109897899|ref|YP_661154.1| 16S rRNA processing protein RimM [Pseudoalteromonas atlantica T6c]
gi|123360985|sp|Q15VI8|RIMM_PSEA6 RecName: Full=Ribosome maturation factor rimM
gi|109700180|gb|ABG40100.1| 16S rRNA processing protein RimM [Pseudoalteromonas atlantica T6c]
Length = 176
Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M ++M IG +G+ G V I SY + + Y + + +E+ + +
Sbjct: 1 MSHASDTLVMGKIGAPYGVKGWVKITSYTDELDGIFSYTPWLVGQEGNTKEIVVDQWRTH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK +A G++ A +++L + K Q +L+ DEF+ +L M+ QG
Sbjct: 61 NKGLVAKLVGVETRDDAESIKNLDISIKAQQLP--QLDGDEFYWRELVGMQVVTEQGYNL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPF-TKFAVLEVNLQENKILID 163
G V ++ GA ++ IK +K ++P+ V +V+ + I +D
Sbjct: 119 GVVKELFETGANDVMLIKANLKDAFGQKERMVPYLIDQVVKKVDREAKTIQVD 171
>gi|295097176|emb|CBK86266.1| 16S rRNA processing protein RimM [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 179
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+ +G+ G + + S + + Y + + E+ + N+ I
Sbjct: 9 EPIVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKAGKWEEVELESWRHHNQDII 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 69 IKLKGIDDRDAANALTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYSLGKVID 126
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 127 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTQTIEVDWDPG 178
>gi|323493647|ref|ZP_08098768.1| 16S rRNA-processing protein RimM [Vibrio brasiliensis LMG 20546]
gi|323312170|gb|EGA65313.1| 16S rRNA-processing protein RimM [Vibrio brasiliensis LMG 20546]
Length = 182
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 DDKIVVGKFGATYGIRGWLKVFSYTDNTESIFDYTPWFIKQGEKWVEYKVESWKRHNKGL 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +D A + + ++ EL DEF+ DL M+ +G G V
Sbjct: 71 VVKLEDLDVREEAQLMTNFEISIDPAVLP--ELPSDEFYWRDLIGMQVVTDKGYDLGIVS 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L IK +K LIPF + + ++ + +I +D
Sbjct: 129 DMLETGSNDVLVIKANLKDAFGQKERLIPFLEEQVIKNIDREAQRIEVDWDPG 181
>gi|325681250|ref|ZP_08160780.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
gi|324107172|gb|EGC01458.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
Length = 172
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
+ KL+ I + GL GEV + ++ + P L + LY + I + + +
Sbjct: 1 MQKLLEAGKIVSVFGLKGEVKVQAWCDTPDFLCEFDTLYYKSGTPVEIERSRVQKNIVVM 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
GID + A ++R+ LY R D EL+E+ +F DL ++ D G+ +G +
Sbjct: 61 KIKGIDTVEEAQKIRNRVLYIDRDD---VELDENTYFVQDLVGLKVVDLDSGREYGTLTE 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
V GA + IK+ K + IP V E +++ + I P+ ++
Sbjct: 118 VSETGANDVYHIKSADGKMYYIPAIPSVVAETDIEGGVMKITPLEGLFDDAEE 170
>gi|170765933|ref|ZP_02900744.1| 16S rRNA processing protein RimM [Escherichia albertii TW07627]
gi|170125079|gb|EDS94010.1| 16S rRNA processing protein RimM [Escherichia albertii TW07627]
Length = 183
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRLIEVDWDPG 182
>gi|297191792|ref|ZP_06909190.1| 16S rRNA processing protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151068|gb|EDY65599.2| 16S rRNA processing protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 187
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKR 59
+ +++ IG HG+ GEV ++ + P L + + D L I + R
Sbjct: 1 MSVQLVVGRIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPATAGPLTIETGRVHSGR 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ + ++A LR+ L D ++ E DE+++ L +++ G G++
Sbjct: 61 LLLRFEGVKDRNAAEALRNT-LLIAEVDPEELPEEPDEYYDHQLMDLDVVLEDGTEIGRI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK-NPQ 178
+ + + + ++ +IPF + V E++L+E + +I P ++ + +
Sbjct: 120 TEISHLPSQDLFIVERPDGSEVMIPFVQEIVAEIDLEEQRAVITPPRGLIDGSEAEVASG 179
Query: 179 YDCPLDSA 186
D D +
Sbjct: 180 RDASEDGS 187
>gi|118443705|ref|YP_878283.1| 16S rRNA-processing protein RimM [Clostridium novyi NT]
gi|209573572|sp|A0Q0Y1|RIMM_CLONN RecName: Full=Ribosome maturation factor rimM
gi|118134161|gb|ABK61205.1| 16S rRNA processing protein RimM [Clostridium novyi NT]
Length = 162
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THG+ GE+ + +N D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGIKGEIKVMPSTDNVERFKELNEAYIDGNIVEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A L++ + R++ L+ED ++ D+ +D K G + +
Sbjct: 61 IKGIDSIEDAQRLKNKYIKVSRENAAT--LDEDCYYEADIVGCTVYDENEKQLGNIDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ G+ + IK LIP K ++++++ KI+I P+
Sbjct: 119 HTGSNDVYWIKGPN--ELLIPAIKSVIVDIDVNNKKIIIKPLE 159
>gi|312883947|ref|ZP_07743664.1| 16S rRNA-processing protein RimM [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368405|gb|EFP95940.1| 16S rRNA-processing protein RimM [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 182
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 12/176 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
++ +++ G ++G+ G + + SY +N + Y + + E ++ R N
Sbjct: 8 TMVNDKIVVGKFGASYGIRGWLKVFSYTDNTESIFDYSPWFVNQNGSWVEYKVESWKRHN 67
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + G++ A + + ++ +L ED+F+ +L M G G
Sbjct: 68 KSMVVKLEGLEVREEAQLMTNFEICIDPAVLP--KLPEDQFYWRELIGMSVVTEGGYDLG 125
Query: 118 QVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
V + G+ +L IK +K LIPF + + ++ +I +D
Sbjct: 126 VVSDMLETGSNDVLVIKANLKDAFGQKERLIPFLEEQVIKNIDRTAQRIEVDWDPG 181
>gi|240137229|ref|YP_002961698.1| putative 16S rRNA processing protein [Methylobacterium extorquens
AM1]
gi|240007195|gb|ACS38421.1| putative 16S rRNA processing protein [Methylobacterium extorquens
AM1]
Length = 223
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+S+D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHSSDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRSGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V NFG G +LEI+ T L+PFTK V +++ K++ DP + P
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADPP------DDLFAPPGP 216
Query: 181 CPLDSAG 187
P D G
Sbjct: 217 KPADDPG 223
>gi|170759832|ref|YP_001787758.1| 16S rRNA-processing protein RimM [Clostridium botulinum A3 str.
Loch Maree]
gi|169406821|gb|ACA55232.1| 16S rRNA processing protein RimM [Clostridium botulinum A3 str.
Loch Maree]
Length = 164
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D + +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVLIDGEKRKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL D GK GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIGCRVIDEDGKEIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVKGKS--EVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|332307107|ref|YP_004434958.1| 16S rRNA processing protein RimM [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174436|gb|AEE23690.1| 16S rRNA processing protein RimM [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 176
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M +++ IG +G+ G V I SY + + Y + + +E+ + +
Sbjct: 1 MSHASDTLVIGKIGAPYGVKGWVKITSYTDELDGIFSYTPWLVGQEGNTKEIVVDQWRTH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK +A G++ A +++L + K Q +L+ DEF+ +L M+ QG
Sbjct: 61 NKGLVAKLVGVETRDDAESIKNLDISIKAQQLP--QLDGDEFYWRELVGMQVVTEQGYNL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPF-TKFAVLEVNLQENKILID 163
G V ++ GA ++ IK +K ++P+ V +V+ + I +D
Sbjct: 119 GVVKELFETGANDVMLIKANLKDAFGQKERMVPYLIDQVVKQVDREAKTIQVD 171
>gi|167767998|ref|ZP_02440051.1| hypothetical protein CLOSS21_02541 [Clostridium sp. SS2/1]
gi|317498407|ref|ZP_07956702.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_63FAA]
gi|167710327|gb|EDS20906.1| hypothetical protein CLOSS21_02541 [Clostridium sp. SS2/1]
gi|291561000|emb|CBL39800.1| 16S rRNA processing protein RimM [butyrate-producing bacterium
SSC/2]
gi|316894301|gb|EFV16488.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_63FAA]
Length = 171
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 7/173 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+++ + + I THG+ GEV + ++ + Y+ + + L ++ +
Sbjct: 1 MEEFLQVGAIANTHGIAGEVKVFPMTDDIKRFKKLKEVYLDTGKERKLLHVVSCKFVKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+ F NI+ + L+ R LE+DE+F DL + G+ G+
Sbjct: 61 PVLRFKEFSNINEVEMYKRKGLFVTRDQ--AVPLEKDEYFIADLIGLSVIREDNGEVLGE 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ V GA + E+K K L+P + + V+LQ+ +I + + L+
Sbjct: 119 LTDVLQTGANDVYEVKMEDGKEVLLPAIRECIKNVDLQKGEITVHVMKGLLDE 171
>gi|161502227|ref|YP_001569339.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189040850|sp|A9MGT6|RIMM_SALAR RecName: Full=Ribosome maturation factor rimM
gi|160863574|gb|ABX20197.1| hypothetical protein SARI_00251 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 183
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + ++ +++++ N+ I
Sbjct: 13 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKADQWQQVQLESWKHHNQDLI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|113866920|ref|YP_725409.1| 16S rRNA-processing protein RimM [Ralstonia eutropha H16]
gi|123134305|sp|Q0KD80|RIMM_RALEH RecName: Full=Ribosome maturation factor rimM
gi|113525696|emb|CAJ92041.1| RimM protein required for 16S rRNA processing [Ralstonia eutropha
H16]
Length = 222
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL------------ 48
+ LV + IG +G+ G + + +A++ L R+ L + L
Sbjct: 40 PEDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVC 99
Query: 49 -RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+I + + +A SG+ + + A L+ +++ +R DF E EDEF+ DL
Sbjct: 100 VKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPE--EDEFYWVDLIGCT 157
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKN--TMEK--TFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL++ K LIPF + V+ +I++D
Sbjct: 158 VSNEQGELLGEVSGLIDNGAHQILQVACVLPDGKAGERLIPFVDAFLRSVDTAGKRIVVD 217
Query: 164 PIAAGLN 170
GL+
Sbjct: 218 ---WGLD 221
>gi|71733889|ref|YP_273613.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487157|ref|ZP_05641198.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289625895|ref|ZP_06458849.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289646207|ref|ZP_06477550.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298488275|ref|ZP_07006308.1| 16S rRNA processing protein RimM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|109893032|sp|Q48LV9|RIMM_PSE14 RecName: Full=Ribosome maturation factor rimM
gi|71554442|gb|AAZ33653.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157214|gb|EFH98301.1| 16S rRNA processing protein RimM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323177|gb|EFW79266.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329552|gb|EFW85541.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330867525|gb|EGH02234.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330874829|gb|EGH08978.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330985049|gb|EGH83152.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009222|gb|EGH89278.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 179
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVAKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|301050478|ref|ZP_07197357.1| 16S rRNA processing protein RimM [Escherichia coli MS 185-1]
gi|300297825|gb|EFJ54210.1| 16S rRNA processing protein RimM [Escherichia coli MS 185-1]
Length = 183
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 182
>gi|300361926|ref|ZP_07058103.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
gi|300354545|gb|EFJ70416.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
Length = 173
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN-RELRILKMYRKNK 58
+ + + I + HGL GEV +++ + P + +R + ++D +EL + R +
Sbjct: 1 MTEYFEVGKILSPHGLTGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVEATRRHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
++ F GID+I A ++R +LY D +EL E ++ D+ +D G+ G
Sbjct: 61 FYLVKFEGIDDIDQAEKVRGKELYVAETD--QQELPEGSYYFKDILNCPVYDAKTGEKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EIK K+F IP + V V+L +I + + +
Sbjct: 119 VLANIETPGANDIWEIKPEHGKSFWIPNIESVVNNVDLANKRIEVTLLEGLRDEN 173
>gi|288550296|ref|ZP_05969897.2| 16S rRNA processing protein RimM [Enterobacter cancerogenus ATCC
35316]
gi|288315695|gb|EFC54633.1| 16S rRNA processing protein RimM [Enterobacter cancerogenus ATCC
35316]
Length = 179
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+ +G+ G + + S + + Y + + E+ + N+ I
Sbjct: 9 EPIVLGKMGSCYGIRGWLRVFSSTEDADSIFNYQPWFIQKAGKWEEVELESWRHHNQDII 68
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 69 IKLKGVDDRDAANALTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYSLGKVID 126
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 127 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTQTIEVDWDPG 178
>gi|146281576|ref|YP_001171729.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri A1501]
gi|166226469|sp|A4VIT6|RIMM_PSEU5 RecName: Full=Ribosome maturation factor rimM
gi|145569781|gb|ABP78887.1| 16S rRNA processing protein [Pseudomonas stutzeri A1501]
Length = 178
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 1 MVKL----DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILK 52
M + D+LV++ I + HG+ G+V + S+ + N +D R+ L D +++ ++K
Sbjct: 1 MSAMSAPSDELVVIGKIVSVHGVRGDVKVYSFTDPIDNLLDYRRWTLRRGDEVKQVELVK 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ K +A+ G+ + A D ++ R + L++ E++ L+ ++ ++
Sbjct: 61 GRLQGKILVASLKGLTDREVARTYADFEICVPRSELPA--LDDGEYYWYQLQGLKVLNQA 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
G+ GQV + GA +L +K + L+P+T VL+V+L ++ +D
Sbjct: 119 GQLLGQVDHLLETGANDVLVVKPCAGSLDDRERLLPYTDHCVLKVDLDSGEMQVD 173
>gi|145297737|ref|YP_001140578.1| 16S rRNA-processing protein RimM [Aeromonas salmonicida subsp.
salmonicida A449]
gi|172044435|sp|A4SIV8|RIMM_AERS4 RecName: Full=Ribosome maturation factor rimM
gi|142850509|gb|ABO88830.1| 16S rRNA processing protein RimM [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 173
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++K V++ T+GT +G+ G + ++S+ + + Y + + REL++ R NK
Sbjct: 1 MEKPVVLGTLGTVYGIKGWLKVNSFTDVAEAIFDYNPWMINQNGVWRELKVSAWKRHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID A L ++++ L E EF+ DL +G G+V
Sbjct: 61 LICKIDGIDLREDALALTNVEIGVPADLLPA--LPEGEFYWRDLIGCSVSTTKGYDLGKV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF + + ++L I +D
Sbjct: 119 TELMETGSNDVLVVEANVKDAFGAKERLIPFLEEQVIKHIDLTARTIEVDWDPG 172
>gi|258511337|ref|YP_003184771.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478063|gb|ACV58382.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 177
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 9/179 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRK 56
+ + + HGL GEV + + P + R L + EL + +
Sbjct: 1 MTAYYTVGVVTKPHGLRGEVRVYPRTDFPEERFSPGSRLWLRPPGSEPVAELEVRSGRQH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+I F G I R +L L E ++ L +E +G+
Sbjct: 61 QNLWIVGFKGYHAISDVESWRGYELCVPEDML--HPLPEGAYYYHQLVGLEVISDEGEPL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G + V+ GA + ++ + L+P + +L V+L+ ++ + + + +
Sbjct: 119 GVLAEVWTPGANDVYVVRKPGQPDLLLPAIRDVILSVDLEARRMTVHLLPGLRDGEEDE 177
>gi|28899306|ref|NP_798911.1| 16S rRNA-processing protein RimM [Vibrio parahaemolyticus RIMD
2210633]
gi|153838717|ref|ZP_01991384.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ3810]
gi|260363660|ref|ZP_05776456.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus K5030]
gi|260879002|ref|ZP_05891357.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AN-5034]
gi|260897212|ref|ZP_05905708.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus Peru-466]
gi|31076894|sp|Q87LS9|RIMM_VIBPA RecName: Full=Ribosome maturation factor rimM
gi|28807530|dbj|BAC60795.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus RIMD
2210633]
gi|149747877|gb|EDM58755.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ3810]
gi|308088448|gb|EFO38143.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus Peru-466]
gi|308089631|gb|EFO39326.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AN-5034]
gi|308111019|gb|EFO48559.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus K5030]
gi|328474161|gb|EGF44966.1| 16S rRNA-processing protein RimM [Vibrio parahaemolyticus 10329]
Length = 182
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
++ +++ G T+G+ G + + SY +N + Y + E ++ R NK
Sbjct: 11 NEKIVVGKFGATYGIRGWLKVFSYTDNAESIFDYSPWYINQKGKWVEYKVESWKRHNKGM 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A + + ++ EL EDEF+ +L M +G G V
Sbjct: 71 VAKLEGMDVREDAHLMTNFEIAIDPAVLP--ELSEDEFYWRELFGMHVVTTKGYDLGVVT 128
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + +++V+ + +I +D
Sbjct: 129 DMLETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIIKVDREAQRIEVDWDPG 181
>gi|326204804|ref|ZP_08194658.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
gi|325985016|gb|EGD45858.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
Length = 169
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELR---ILKMYRKNKR 59
+ + +++ + THG+ GE+ + ++P + +Y + N L I + +
Sbjct: 1 MLEYLIVGQLVNTHGVKGELKATAQTDDPQRFRKLKWVYIDKNGSLEKCNISGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GID+I A +L+ L R + +L E+ FF D+ ++ +D + G++
Sbjct: 61 VIIKFEGIDSIEEAEKLKGFYLKVDRAN--AVKLPENSFFIADILGLKVYDENNQLLGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + ++++ K L+P K V E++++E KI + L+
Sbjct: 119 KDVIQTGSNDVYVVRDSEAKEILVPALKSVVKEISIEEGKISVILPKGLLD 169
>gi|271963365|ref|YP_003337561.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
gi|270506540|gb|ACZ84818.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
Length = 171
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 7/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ IG HGL G+V ++ ++P L I + +
Sbjct: 3 LVIGRIGRPHGLRGDVSVEVRTDDPERRFAPGTAVATDPASAGPLVIESRRWHSGVLLVR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+++ + A +LR L D + + DEF++ L + G+ G+V V
Sbjct: 63 FEGVNDRNRAEDLRGTTLVIDSADIPPSD-DPDEFYDHQLIGLAVLTPDGERVGEVSDVL 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
+ G +L ++ +PF K V V+L + +++D A L+
Sbjct: 122 HHG-QDLLVVRR-GGAEVYVPFVKALVPVVDLDKGVLVVDGPAGLLDPDE 169
>gi|71281652|ref|YP_270723.1| 16S rRNA-processing protein RimM [Colwellia psychrerythraea 34H]
gi|109893008|sp|Q47WU9|RIMM_COLP3 RecName: Full=Ribosome maturation factor rimM
gi|71147392|gb|AAZ27865.1| 16S rRNA processing protein RimM [Colwellia psychrerythraea 34H]
Length = 176
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRK 56
M +K +++ +G +G+ G + I S+ + + Y +S N+ + + I +
Sbjct: 1 MSTEEKKIILGKVGAVYGIKGWLKIHSFTDETEAILDYFPWSLKLGNNTQTVEITDWRKH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK I +GID+ A L ++ EL ED+F+ DL M +G
Sbjct: 61 NKVLIVKVAGIDDRDEAQALVGSEILTNEAALP--ELSEDDFYWRDLIGMSVVTNKGYDL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + GA +L +K +K LIP+ + + V+++ +I +D
Sbjct: 119 GVVTDMMETGANDVLVVKANLKDGFSKKERLIPYLFEQVIESVSIENKQICVDWDPG 175
>gi|262043854|ref|ZP_06016943.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330013032|ref|ZP_08307554.1| 16S rRNA processing protein RimM [Klebsiella sp. MS 92-3]
gi|259038788|gb|EEW39970.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533618|gb|EGF60332.1| 16S rRNA processing protein RimM [Klebsiella sp. MS 92-3]
Length = 183
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + + + + N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDII 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVID 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 182
>gi|290893076|ref|ZP_06556065.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|290557436|gb|EFD90961.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|307571375|emb|CAR84554.1| 16S rRNA processing protein [Listeria monocytogenes L99]
Length = 169
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K D LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCTVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 TEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|197335041|ref|YP_002155308.1| 16S rRNA processing protein RimM [Vibrio fischeri MJ11]
gi|238690257|sp|B5FAE6|RIMM_VIBFM RecName: Full=Ribosome maturation factor rimM
gi|197316531|gb|ACH65978.1| 16S rRNA processing protein RimM [Vibrio fischeri MJ11]
Length = 175
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K D+++++ G ++G+ G + + S+ + P + Y + + E + R
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + G+D A +L++ K EL EDEF+ +L ME +G
Sbjct: 61 -KGLVCKLKGLDVREEAQTYTNLEIAVKADVLP--ELSEDEFYWRELFGMEVVTTKGYAL 117
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILIDPIAA 167
G V ++ G+ +L +K +K LIPF V++ ++ + +I +D
Sbjct: 118 GVVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVDWDPG 174
>gi|332289617|ref|YP_004420469.1| 16S rRNA-processing protein RimM [Gallibacterium anatis UMN179]
gi|330432513|gb|AEC17572.1| 16S rRNA-processing protein RimM [Gallibacterium anatis UMN179]
Length = 174
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 11/168 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + I ++ I
Sbjct: 8 VVGKLGSTYGIRGWLRVYSSTEYAESIFDYQPWFLNIKKQWQPVEIEGWRHHSQDLIVKI 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ A L ++++ EL+E EF+ DL + QG G V +
Sbjct: 68 KGVDDREQAQTLANIEIGVDLNQLP--ELDEGEFYWHDLIGCRVINLQGYDMGVVSELME 125
Query: 125 FGAGSILEIKNTM-----EKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIP+ V V+L I +D A
Sbjct: 126 TGSNDVLVVQANGKDAFAKQERLIPYIDAVVKRVDLSTKVIEVDWDAG 173
>gi|315648167|ref|ZP_07901268.1| 16S rRNA processing protein RimM [Paenibacillus vortex V453]
gi|315276813|gb|EFU40156.1| 16S rRNA processing protein RimM [Paenibacillus vortex V453]
Length = 173
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 10/173 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
+KL + I THG+ GEV + + + V E +
Sbjct: 3 EKLFTVGKIVNTHGIRGEVKVMPHTDFADQRFAVKSKLFIVPDKGSMIEATVDTSRFHKN 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYW 116
++ F + I+ A + + L K EEL ++E++ ++ + +
Sbjct: 63 MYVLKFKELHGINDAEKYKGSLLKIKAD--LQEELPDNEYYFHEIIGCKVLTDDEPAEEL 120
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + GA + +K K L+P VL+V+ + + + + L
Sbjct: 121 GTISEILTPGANDVWVVKTPQGKEVLLPAIPDVVLDVDKEAKLVRVHLMEGLL 173
>gi|194288940|ref|YP_002004847.1| 16S rRNA-processing protein rimm [Cupriavidus taiwanensis LMG
19424]
gi|209573574|sp|B3R397|RIMM_CUPTR RecName: Full=Ribosome maturation factor rimM
gi|193222775|emb|CAQ68778.1| 16S rRNA PROCESSING PROTEIN [Cupriavidus taiwanensis LMG 19424]
Length = 207
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL------------ 48
+ LV + +G +G+ G + + +A++ L R+ L S L
Sbjct: 25 PEDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLSPPQAGLVAADAARSQPVC 84
Query: 49 -RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+I + + +A +G+ + + A LR +++ +R DF +EDEF+ DL
Sbjct: 85 VKIAQSREHSGTVVAQAAGVADRNLAEALRGRRVWIRRADFPAP--DEDEFYWVDLIGCN 142
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIK--NTMEK--TFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL++ K LIPF + EV+ +I++D
Sbjct: 143 VSNEQGELLGEVSGLIDNGAHQILQVAFVQPDGKAGERLIPFVDAFLREVDTAGKRIVVD 202
Query: 164 PIAAGLN 170
GL+
Sbjct: 203 ---WGLD 206
>gi|167747200|ref|ZP_02419327.1| hypothetical protein ANACAC_01914 [Anaerostipes caccae DSM 14662]
gi|317473599|ref|ZP_07932888.1| 16S rRNA processing protein RimM [Anaerostipes sp. 3_2_56FAA]
gi|167654160|gb|EDR98289.1| hypothetical protein ANACAC_01914 [Anaerostipes caccae DSM 14662]
gi|316898889|gb|EFV20914.1| 16S rRNA processing protein RimM [Anaerostipes sp. 3_2_56FAA]
Length = 170
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE---LRILKMYRKNKR 59
++ ++ + I +THG+ GEV + ++ + + RE L + +
Sbjct: 1 MEDILQVGAIASTHGVRGEVKVYPMTDDVERFKDLKEVLLDTGREMKLLHVKSCKFFKNQ 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F DNI+ + + L+ R++ +LEE+EFF D+ + + GK G +
Sbjct: 61 PILKFEEFDNINDIEQYKRCGLFVTREN--AVKLEENEFFIADIIGFDVYRETGKKLGIL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V GA + +K K L+P + + +V+L+E +I + + L+
Sbjct: 119 DDVLQTGANDVYVVKMDDGKEVLLPAIRDCIKKVSLEEKRIDVFVMKGLLDE 170
>gi|220928162|ref|YP_002505071.1| 16S rRNA-processing protein RimM [Clostridium cellulolyticum H10]
gi|254797746|sp|B8I7T4|RIMM_CLOCE RecName: Full=Ribosome maturation factor rimM
gi|219998490|gb|ACL75091.1| 16S rRNA processing protein RimM [Clostridium cellulolyticum H10]
Length = 169
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELR---ILKMYRKNKR 59
+ + +++ + THG+ GE+ S ++P + +Y + N L I + +
Sbjct: 1 MLEYLIVGQLINTHGVKGELKATSQTDDPQRFKKLKWVYIDKNGSLEKYDINGVKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G+D+I A +L+ + R + +L E+ FF +D+ ++ +D + G++
Sbjct: 61 IIIKFQGVDSIEEAEKLKGFYIKVDRAN--AVKLPENSFFISDIIGLKVYDENNQLLGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + ++++ K LIP K V EV+++E KI + L+
Sbjct: 119 KDVIQTGSNDVYVVRDSDSKEILIPALKSVVKEVSIEEGKISVILPKGLLD 169
>gi|296139336|ref|YP_003646579.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
gi|296027470|gb|ADG78240.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
Length = 173
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GE+ +D ++P L + D + + + R
Sbjct: 3 LVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRRPRAKDTQTYTVAASREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A ELR D + + + DEF++ +LE + G G +
Sbjct: 63 LVRLEGVTDRTAADELRGTLFVIDSADVQPSD-DPDEFYDHELEGLAVRTADGTEVGVIA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G +L +K + LIPF V V++ I IDP L+
Sbjct: 122 EVLHPPGGELLSVKAPDGREILIPFVTAIVPVVDVAGGFIEIDPPEGLLD 171
>gi|152971458|ref|YP_001336567.1| 16S rRNA-processing protein RimM [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166226446|sp|A6TCL6|RIMM_KLEP7 RecName: Full=Ribosome maturation factor rimM
gi|150956307|gb|ABR78337.1| 16S rRNA-processing protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 182
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + + + + N+ I
Sbjct: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 181
>gi|238896054|ref|YP_002920790.1| 16S rRNA-processing protein RimM [Klebsiella pneumoniae NTUH-K2044]
gi|238548372|dbj|BAH64723.1| 16S rRNA-processing protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 185
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + + + + N+ I
Sbjct: 15 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELESWRHHNQDII 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V
Sbjct: 75 IKLKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVID 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 133 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 184
>gi|56964055|ref|YP_175786.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
gi|56910298|dbj|BAD64825.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
Length = 190
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID------LNRYVLYSNDNRELRILKMYRKN 57
+ + + THG+ GEV + S + P + + + L ++ +R +
Sbjct: 18 MTNWYNVGRLVNTHGVRGEVRVLSNTDFPEERYANGSVLKVAKSPQAEGTLVTVRSHRTH 77
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G ++I+ + LY EL+E E++ ++ D +G
Sbjct: 78 KNFDLLTFEGYNSINEVECFKGSYLYVSEDQL--SELDEHEYYYHEIIGCTVVDEEGTKL 135
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G++ + GA + + K L+P+ + V EV+++ +I + I GL++
Sbjct: 136 GKIKDIIETGANDVWVVDRQQRKDLLLPYIEEVVKEVDVENKRIRV-HIMEGLDDE 190
>gi|313637368|gb|EFS02847.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL S4-171]
Length = 172
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNR--ELRILKMYRKN 57
++K+ + I THGL GE+ + + + + + L+ +++ E I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVXLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCTVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIEVMEGLLD 172
>gi|117624830|ref|YP_853743.1| 16S rRNA-processing protein [Escherichia coli APEC O1]
gi|170681223|ref|YP_001744791.1| 16S rRNA-processing protein RimM [Escherichia coli SMS-3-5]
gi|187775815|ref|ZP_02798472.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4196]
gi|189009961|ref|ZP_02803593.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4076]
gi|189402631|ref|ZP_02783684.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4401]
gi|189403179|ref|ZP_02793703.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4486]
gi|189404126|ref|ZP_02787407.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4501]
gi|189405285|ref|ZP_02814517.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC869]
gi|189406162|ref|ZP_02826732.2| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC508]
gi|191169052|ref|ZP_03030815.1| 16S rRNA processing protein RimM [Escherichia coli B7A]
gi|191174576|ref|ZP_03036071.1| 16S rRNA processing protein RimM [Escherichia coli F11]
gi|193064059|ref|ZP_03045144.1| 16S rRNA processing protein RimM [Escherichia coli E22]
gi|193071700|ref|ZP_03052601.1| 16S rRNA processing protein RimM [Escherichia coli E110019]
gi|194430174|ref|ZP_03062675.1| 16S rRNA processing protein RimM [Escherichia coli B171]
gi|194435112|ref|ZP_03067348.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1012]
gi|194439326|ref|ZP_03071404.1| 16S rRNA processing protein RimM [Escherichia coli 101-1]
gi|208807311|ref|ZP_03249648.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4206]
gi|208812607|ref|ZP_03253936.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4045]
gi|208821784|ref|ZP_03262104.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4042]
gi|209396490|ref|YP_002272079.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4115]
gi|217327249|ref|ZP_03443332.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
TW14588]
gi|227888174|ref|ZP_04005979.1| 16S rRNA-processing protein [Escherichia coli 83972]
gi|261255685|ref|ZP_05948218.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
FRIK966]
gi|291283880|ref|YP_003500698.1| 16S rRNA-processing protein rimM [Escherichia coli O55:H7 str.
CB9615]
gi|300819919|ref|ZP_07100102.1| 16S rRNA processing protein RimM [Escherichia coli MS 107-1]
gi|300825116|ref|ZP_07105209.1| 16S rRNA processing protein RimM [Escherichia coli MS 119-7]
gi|300900206|ref|ZP_07118394.1| 16S rRNA processing protein RimM [Escherichia coli MS 198-1]
gi|300921152|ref|ZP_07137531.1| 16S rRNA processing protein RimM [Escherichia coli MS 115-1]
gi|300925600|ref|ZP_07141470.1| 16S rRNA processing protein RimM [Escherichia coli MS 182-1]
gi|300930667|ref|ZP_07146053.1| 16S rRNA processing protein RimM [Escherichia coli MS 187-1]
gi|300940946|ref|ZP_07155470.1| 16S rRNA processing protein RimM [Escherichia coli MS 21-1]
gi|300949003|ref|ZP_07163056.1| 16S rRNA processing protein RimM [Escherichia coli MS 116-1]
gi|300957392|ref|ZP_07169606.1| 16S rRNA processing protein RimM [Escherichia coli MS 175-1]
gi|300986822|ref|ZP_07177811.1| 16S rRNA processing protein RimM [Escherichia coli MS 45-1]
gi|300990722|ref|ZP_07179307.1| 16S rRNA processing protein RimM [Escherichia coli MS 200-1]
gi|301026376|ref|ZP_07189822.1| 16S rRNA processing protein RimM [Escherichia coli MS 69-1]
gi|301326727|ref|ZP_07220041.1| 16S rRNA processing protein RimM [Escherichia coli MS 78-1]
gi|301644050|ref|ZP_07244066.1| 16S rRNA processing protein RimM [Escherichia coli MS 146-1]
gi|309794119|ref|ZP_07688543.1| 16S rRNA processing protein RimM [Escherichia coli MS 145-7]
gi|331658756|ref|ZP_08359698.1| 16S rRNA processing protein RimM [Escherichia coli TA206]
gi|331669358|ref|ZP_08370204.1| 16S rRNA processing protein RimM [Escherichia coli TA271]
gi|331684264|ref|ZP_08384856.1| 16S rRNA processing protein RimM [Escherichia coli H299]
gi|209573578|sp|B1LPB5|RIMM_ECOSM RecName: Full=Ribosome maturation factor rimM
gi|238058950|sp|B5Z227|RIMM_ECO5E RecName: Full=Ribosome maturation factor rimM
gi|115513954|gb|ABJ02029.1| 16S rRNA processing protein [Escherichia coli APEC O1]
gi|170518941|gb|ACB17119.1| 16S rRNA processing protein RimM [Escherichia coli SMS-3-5]
gi|187770590|gb|EDU34434.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4196]
gi|189003397|gb|EDU72383.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4076]
gi|189354552|gb|EDU72971.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4401]
gi|189362106|gb|EDU80525.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4486]
gi|189367231|gb|EDU85647.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4501]
gi|189370850|gb|EDU89266.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC869]
gi|189376158|gb|EDU94574.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC508]
gi|190900893|gb|EDV60679.1| 16S rRNA processing protein RimM [Escherichia coli B7A]
gi|190905149|gb|EDV64793.1| 16S rRNA processing protein RimM [Escherichia coli F11]
gi|192929294|gb|EDV82903.1| 16S rRNA processing protein RimM [Escherichia coli E22]
gi|192954995|gb|EDV85497.1| 16S rRNA processing protein RimM [Escherichia coli E110019]
gi|194411799|gb|EDX28120.1| 16S rRNA processing protein RimM [Escherichia coli B171]
gi|194416643|gb|EDX32776.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1012]
gi|194421688|gb|EDX37697.1| 16S rRNA processing protein RimM [Escherichia coli 101-1]
gi|208727112|gb|EDZ76713.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4206]
gi|208733884|gb|EDZ82571.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4045]
gi|208741907|gb|EDZ89589.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4042]
gi|209157890|gb|ACI35323.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC4115]
gi|217319616|gb|EEC28041.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
TW14588]
gi|227834814|gb|EEJ45280.1| 16S rRNA-processing protein [Escherichia coli 83972]
gi|290763753|gb|ADD57714.1| 16S rRNA-processing protein rimM [Escherichia coli O55:H7 str.
CB9615]
gi|294491107|gb|ADE89863.1| 16S rRNA processing protein RimM [Escherichia coli IHE3034]
gi|300305690|gb|EFJ60210.1| 16S rRNA processing protein RimM [Escherichia coli MS 200-1]
gi|300315827|gb|EFJ65611.1| 16S rRNA processing protein RimM [Escherichia coli MS 175-1]
gi|300356263|gb|EFJ72133.1| 16S rRNA processing protein RimM [Escherichia coli MS 198-1]
gi|300395562|gb|EFJ79100.1| 16S rRNA processing protein RimM [Escherichia coli MS 69-1]
gi|300407874|gb|EFJ91412.1| 16S rRNA processing protein RimM [Escherichia coli MS 45-1]
gi|300411902|gb|EFJ95212.1| 16S rRNA processing protein RimM [Escherichia coli MS 115-1]
gi|300418295|gb|EFK01606.1| 16S rRNA processing protein RimM [Escherichia coli MS 182-1]
gi|300451530|gb|EFK15150.1| 16S rRNA processing protein RimM [Escherichia coli MS 116-1]
gi|300454270|gb|EFK17763.1| 16S rRNA processing protein RimM [Escherichia coli MS 21-1]
gi|300461464|gb|EFK24957.1| 16S rRNA processing protein RimM [Escherichia coli MS 187-1]
gi|300522388|gb|EFK43457.1| 16S rRNA processing protein RimM [Escherichia coli MS 119-7]
gi|300527507|gb|EFK48569.1| 16S rRNA processing protein RimM [Escherichia coli MS 107-1]
gi|300846587|gb|EFK74347.1| 16S rRNA processing protein RimM [Escherichia coli MS 78-1]
gi|301077595|gb|EFK92401.1| 16S rRNA processing protein RimM [Escherichia coli MS 146-1]
gi|308122024|gb|EFO59286.1| 16S rRNA processing protein RimM [Escherichia coli MS 145-7]
gi|315284816|gb|EFU44261.1| 16S rRNA processing protein RimM [Escherichia coli MS 110-3]
gi|315290951|gb|EFU50316.1| 16S rRNA processing protein RimM [Escherichia coli MS 153-1]
gi|315298673|gb|EFU57927.1| 16S rRNA processing protein RimM [Escherichia coli MS 16-3]
gi|320177025|gb|EFW52046.1| 16S rRNA processing protein RimM [Shigella dysenteriae CDC 74-1112]
gi|320182478|gb|EFW57372.1| 16S rRNA processing protein RimM [Shigella boydii ATCC 9905]
gi|320188943|gb|EFW63602.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
EC1212]
gi|320194772|gb|EFW69401.1| 16S rRNA processing protein RimM [Escherichia coli WV_060327]
gi|320198381|gb|EFW72983.1| 16S rRNA processing protein RimM [Escherichia coli EC4100B]
gi|324005824|gb|EGB75043.1| 16S rRNA processing protein RimM [Escherichia coli MS 57-2]
gi|324012446|gb|EGB81665.1| 16S rRNA processing protein RimM [Escherichia coli MS 60-1]
gi|324016588|gb|EGB85807.1| 16S rRNA processing protein RimM [Escherichia coli MS 117-3]
gi|326344360|gb|EGD68118.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
1125]
gi|326347729|gb|EGD71446.1| 16S rRNA processing protein RimM [Escherichia coli O157:H7 str.
1044]
gi|330912371|gb|EGH40881.1| 16S rRNA processing protein RimM [Escherichia coli AA86]
gi|331053338|gb|EGI25367.1| 16S rRNA processing protein RimM [Escherichia coli TA206]
gi|331063026|gb|EGI34939.1| 16S rRNA processing protein RimM [Escherichia coli TA271]
gi|331077879|gb|EGI49085.1| 16S rRNA processing protein RimM [Escherichia coli H299]
Length = 183
Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 182
>gi|237746850|ref|ZP_04577330.1| ribosome maturation factor rimM [Oxalobacter formigenes HOxBLS]
gi|229378201|gb|EEO28292.1| ribosome maturation factor rimM [Oxalobacter formigenes HOxBLS]
Length = 179
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKNKRFIA 62
LV + +G +G+ G V I Y+ L + L S+ +RE+++L+ + +A
Sbjct: 12 DLVEVGHVGGAYGIRGWVRIKPYSAGAEALLAVKEWWLDSSGSREVKVLQARWQGADVVA 71
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ + +A LR + R+ F +E E++ DL + F+RQG G V G+
Sbjct: 72 CLAGVSDRDAAEALRGAVVRISRRHFPAP--DEGEYYWVDLIGLAVFNRQGDCLGTVKGL 129
Query: 123 YNFGAGSILEIKN----TMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L+I+ ++ LIPF + V +++++ K+ +D
Sbjct: 130 MDNGAHPVLQIETGMPEDKKRELLIPFVERHVGKIDIENRKMTVD 174
>gi|311068122|ref|YP_003973045.1| 16S rRNA-processing protein RimM [Bacillus atrophaeus 1942]
gi|310868639|gb|ADP32114.1| 16S rRNA-processing protein RimM [Bacillus atrophaeus 1942]
Length = 174
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M K + + I THG+ GEV + S + + + Y+ S +++ ++ +
Sbjct: 1 MAK--RWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGKTLYLFMSGSKEPVQVTVQTH 58
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K+F + F +++ EL++ + +D EL+ E++ ++ E + G
Sbjct: 59 RLHKQFHLLQFKERPSLNDVEELKNAIIKVPEEDL--GELDAGEYYFHEIIGCEVYTEDG 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ G + + GA + ++ +K LIP+ + V ++++ E KI I + ++
Sbjct: 117 ERIGVIREILTPGANDVWVVERKGQKDALIPYIESIVKDIDVTEKKIQIHLMEGLIDE 174
>gi|157148121|ref|YP_001455440.1| 16S rRNA-processing protein RimM [Citrobacter koseri ATCC BAA-895]
gi|157085326|gb|ABV15004.1| hypothetical protein CKO_03931 [Citrobacter koseri ATCC BAA-895]
Length = 183
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 EPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDSANLLTNCEIVVDSSQLPA--LEDGSYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|331664173|ref|ZP_08365082.1| 16S rRNA processing protein RimM [Escherichia coli TA143]
gi|331058630|gb|EGI30608.1| 16S rRNA processing protein RimM [Escherichia coli TA143]
Length = 183
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRLIEVDWDPG 182
>gi|154246453|ref|YP_001417411.1| 16S rRNA-processing protein RimM [Xanthobacter autotrophicus Py2]
gi|238686722|sp|A7IIB1|RIMM_XANP2 RecName: Full=Ribosome maturation factor rimM
gi|154160538|gb|ABS67754.1| 16S rRNA processing protein RimM [Xanthobacter autotrophicus Py2]
Length = 185
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFI 61
+ +L+A IG HG+ GEV + + +P + Y ++ + RI + F+
Sbjct: 1 MADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKRFRIAALRAAKDHFV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI + +A L +L L+ R+ + ++D F++ DL ++ D G G+V
Sbjct: 61 ARIEGIADRTAAEALTNLDLFVPREALPPPD-DDDTFYHADLIGLDVVDEAGVVIGKVVA 119
Query: 122 VYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+ +FGAG ILE T+ KT ++PF+K AV V++ ++++ A P
Sbjct: 120 LQDFGAGDILEYAPTLPATKAKTLMVPFSKDAVPVVDVPGRRVVV---AEAFVERRPAEP 176
Query: 178 QYDCPL 183
+
Sbjct: 177 EEGEDT 182
>gi|289435136|ref|YP_003465008.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171380|emb|CBH27924.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 172
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+E++ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTD--LEENEYYFHEIIGCIVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K K LIP+ + V E+N+ + KI I + L+
Sbjct: 119 GEITEILTPGANDVWVVKGKDNKEKLIPYIEEVVKEINISDKKITIKVMEGLLD 172
>gi|187730041|ref|YP_001881398.1| 16S rRNA-processing protein RimM [Shigella boydii CDC 3083-94]
gi|218547873|ref|YP_002381664.1| 16S rRNA-processing protein RimM [Escherichia fergusonii ATCC
35469]
gi|226734089|sp|B7LUW5|RIMM_ESCF3 RecName: Full=Ribosome maturation factor rimM
gi|238691732|sp|B2TYN0|RIMM_SHIB3 RecName: Full=Ribosome maturation factor rimM
gi|187427033|gb|ACD06307.1| 16S rRNA processing protein RimM [Shigella boydii CDC 3083-94]
gi|218355414|emb|CAQ88023.1| 16S rRNA processing protein [Escherichia fergusonii ATCC 35469]
Length = 182
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181
>gi|30064007|ref|NP_838178.1| 16S rRNA-processing protein RimM [Shigella flexneri 2a str. 2457T]
gi|56480152|ref|NP_708456.2| 16S rRNA-processing protein RimM [Shigella flexneri 2a str. 301]
gi|89109409|ref|AP_003189.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
W3110]
gi|90111466|ref|NP_417099.4| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
MG1655]
gi|110642769|ref|YP_670499.1| 16S rRNA-processing protein RimM [Escherichia coli 536]
gi|110806724|ref|YP_690244.1| 16S rRNA-processing protein RimM [Shigella flexneri 5 str. 8401]
gi|157154813|ref|YP_001463927.1| 16S rRNA-processing protein RimM [Escherichia coli E24377A]
gi|157162084|ref|YP_001459402.1| 16S rRNA-processing protein RimM [Escherichia coli HS]
gi|161367544|ref|NP_289161.2| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 EDL933]
gi|161486146|ref|NP_755011.2| 16S rRNA-processing protein RimM [Escherichia coli CFT073]
gi|161950061|ref|YP_404316.2| 16S rRNA-processing protein RimM [Shigella dysenteriae Sd197]
gi|161984877|ref|YP_409099.2| 16S rRNA-processing protein RimM [Shigella boydii Sb227]
gi|161986471|ref|YP_311617.2| 16S rRNA-processing protein RimM [Shigella sonnei Ss046]
gi|162139719|ref|NP_311498.3| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
Sakai]
gi|170019115|ref|YP_001724069.1| 16S rRNA-processing protein RimM [Escherichia coli ATCC 8739]
gi|170082212|ref|YP_001731532.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
DH10B]
gi|188495797|ref|ZP_03003067.1| 16S rRNA processing protein RimM [Escherichia coli 53638]
gi|195940202|ref|ZP_03085584.1| 16S rRNA-processing protein [Escherichia coli O157:H7 str. EC4024]
gi|209920083|ref|YP_002294167.1| 16S rRNA-processing protein RimM [Escherichia coli SE11]
gi|215487958|ref|YP_002330389.1| 16S rRNA-processing protein RimM [Escherichia coli O127:H6 str.
E2348/69]
gi|218555187|ref|YP_002388100.1| 16S rRNA-processing protein RimM [Escherichia coli IAI1]
gi|218559528|ref|YP_002392441.1| 16S rRNA-processing protein RimM [Escherichia coli S88]
gi|218690726|ref|YP_002398938.1| 16S rRNA-processing protein RimM [Escherichia coli ED1a]
gi|218696232|ref|YP_002403899.1| 16S rRNA-processing protein RimM [Escherichia coli 55989]
gi|218701120|ref|YP_002408749.1| 16S rRNA-processing protein RimM [Escherichia coli IAI39]
gi|218706109|ref|YP_002413628.1| 16S rRNA-processing protein RimM [Escherichia coli UMN026]
gi|238901768|ref|YP_002927564.1| 16S rRNA processing protein [Escherichia coli BW2952]
gi|253772498|ref|YP_003035329.1| 16S rRNA-processing protein RimM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162578|ref|YP_003045686.1| 16S rRNA-processing protein RimM [Escherichia coli B str. REL606]
gi|254794554|ref|YP_003079391.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
TW14359]
gi|256019573|ref|ZP_05433438.1| 16S rRNA-processing protein RimM [Shigella sp. D9]
gi|256024865|ref|ZP_05438730.1| 16S rRNA-processing protein RimM [Escherichia sp. 4_1_40B]
gi|260845289|ref|YP_003223067.1| 16S rRNA processing protein [Escherichia coli O103:H2 str. 12009]
gi|260856697|ref|YP_003230588.1| 16S rRNA processing protein [Escherichia coli O26:H11 str. 11368]
gi|260869289|ref|YP_003235691.1| 16S rRNA processing protein [Escherichia coli O111:H- str. 11128]
gi|261227491|ref|ZP_05941772.1| 16S rRNA processing protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|293406115|ref|ZP_06650041.1| ribosome maturation factor rimM [Escherichia coli FVEC1412]
gi|297517104|ref|ZP_06935490.1| 16S rRNA-processing protein RimM [Escherichia coli OP50]
gi|298381848|ref|ZP_06991445.1| ribosome maturation factor rimM [Escherichia coli FVEC1302]
gi|306812474|ref|ZP_07446672.1| 16S rRNA-processing protein RimM [Escherichia coli NC101]
gi|307139329|ref|ZP_07498685.1| 16S rRNA-processing protein RimM [Escherichia coli H736]
gi|307315080|ref|ZP_07594664.1| 16S rRNA processing protein RimM [Escherichia coli W]
gi|309784648|ref|ZP_07679283.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1617]
gi|312965539|ref|ZP_07779770.1| 16S rRNA processing protein RimM [Escherichia coli 2362-75]
gi|312973150|ref|ZP_07787323.1| 16S rRNA processing protein RimM [Escherichia coli 1827-70]
gi|67472030|sp|P0A7X6|RIMM_ECOLI RecName: Full=Ribosome maturation factor rimM; AltName: Full=21K
gi|67472031|sp|P0A7X7|RIMM_ECOL6 RecName: Full=Ribosome maturation factor rimM
gi|67472032|sp|P0A7X8|RIMM_ECO57 RecName: Full=Ribosome maturation factor rimM
gi|67472033|sp|P0A7X9|RIMM_SHIFL RecName: Full=Ribosome maturation factor rimM
gi|122957241|sp|Q0T176|RIMM_SHIF8 RecName: Full=Ribosome maturation factor rimM
gi|123343733|sp|Q0TEN1|RIMM_ECOL5 RecName: Full=Ribosome maturation factor rimM
gi|166985944|sp|A7ZQ48|RIMM_ECO24 RecName: Full=Ribosome maturation factor rimM
gi|166985955|sp|A8A3B5|RIMM_ECOHS RecName: Full=Ribosome maturation factor rimM
gi|171704424|sp|A1AED9|RIMM_ECOK1 RecName: Full=Ribosome maturation factor rimM
gi|189040838|sp|B1IVM5|RIMM_ECOLC RecName: Full=Ribosome maturation factor rimM
gi|209573742|sp|Q1R8B7|RIMM_ECOUT RecName: Full=Ribosome maturation factor rimM
gi|226694912|sp|B7MIU6|RIMM_ECO45 RecName: Full=Ribosome maturation factor rimM
gi|226694913|sp|B7NSA7|RIMM_ECO7I RecName: Full=Ribosome maturation factor rimM
gi|226734087|sp|B7M977|RIMM_ECO8A RecName: Full=Ribosome maturation factor rimM
gi|226734088|sp|B7N6J4|RIMM_ECOLU RecName: Full=Ribosome maturation factor rimM
gi|229564321|sp|B1XBT0|RIMM_ECODH RecName: Full=Ribosome maturation factor rimM
gi|238058951|sp|B6I630|RIMM_ECOSE RecName: Full=Ribosome maturation factor rimM
gi|254797747|sp|B7UH57|RIMM_ECO27 RecName: Full=Ribosome maturation factor rimM
gi|254797748|sp|B7LDJ7|RIMM_ECO55 RecName: Full=Ribosome maturation factor rimM
gi|254797749|sp|B7MYA1|RIMM_ECO81 RecName: Full=Ribosome maturation factor rimM
gi|259585643|sp|C4ZYM6|RIMM_ECOBW RecName: Full=Ribosome maturation factor rimM
gi|30042263|gb|AAP17988.1| hypothetical protein S2845 [Shigella flexneri 2a str. 2457T]
gi|56383703|gb|AAN44163.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|85675479|dbj|BAA16493.2| 16S rRNA processing protein [Escherichia coli str. K12 substr.
W3110]
gi|87082136|gb|AAC75657.2| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
MG1655]
gi|110344361|gb|ABG70598.1| 16S rRNA processing protein RimM [Escherichia coli 536]
gi|110616272|gb|ABF04939.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157067764|gb|ABV07019.1| 16S rRNA processing protein RimM [Escherichia coli HS]
gi|157076843|gb|ABV16551.1| 16S rRNA processing protein RimM [Escherichia coli E24377A]
gi|169754043|gb|ACA76742.1| 16S rRNA processing protein RimM [Escherichia coli ATCC 8739]
gi|169890047|gb|ACB03754.1| 16S rRNA processing protein [Escherichia coli str. K-12 substr.
DH10B]
gi|188490996|gb|EDU66099.1| 16S rRNA processing protein RimM [Escherichia coli 53638]
gi|209913342|dbj|BAG78416.1| 16S rRNA processing protein [Escherichia coli SE11]
gi|215266030|emb|CAS10445.1| 16S rRNA processing protein [Escherichia coli O127:H6 str.
E2348/69]
gi|218352964|emb|CAU98764.1| 16S rRNA processing protein [Escherichia coli 55989]
gi|218361955|emb|CAQ99556.1| 16S rRNA processing protein [Escherichia coli IAI1]
gi|218366297|emb|CAR04048.1| 16S rRNA processing protein [Escherichia coli S88]
gi|218371106|emb|CAR18934.1| 16S rRNA processing protein [Escherichia coli IAI39]
gi|218428290|emb|CAR09067.1| 16S rRNA processing protein [Escherichia coli ED1a]
gi|218433206|emb|CAR14104.1| 16S rRNA processing protein [Escherichia coli UMN026]
gi|222034310|emb|CAP77051.1| 16S rRNA-processing protein rimM [Escherichia coli LF82]
gi|238859735|gb|ACR61733.1| 16S rRNA processing protein [Escherichia coli BW2952]
gi|242378203|emb|CAQ32978.1| ribosome maturation protein [Escherichia coli BL21(DE3)]
gi|253323542|gb|ACT28144.1| 16S rRNA processing protein RimM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974479|gb|ACT40150.1| 16S rRNA-processing protein [Escherichia coli B str. REL606]
gi|253978646|gb|ACT44316.1| 16S rRNA-processing protein [Escherichia coli BL21(DE3)]
gi|254593954|gb|ACT73315.1| 16S rRNA processing protein [Escherichia coli O157:H7 str. TW14359]
gi|257755346|dbj|BAI26848.1| 16S rRNA processing protein [Escherichia coli O26:H11 str. 11368]
gi|257760436|dbj|BAI31933.1| 16S rRNA processing protein [Escherichia coli O103:H2 str. 12009]
gi|257765645|dbj|BAI37140.1| 16S rRNA processing protein [Escherichia coli O111:H- str. 11128]
gi|260448318|gb|ACX38740.1| 16S rRNA processing protein RimM [Escherichia coli DH1]
gi|281179654|dbj|BAI55984.1| 16S rRNA processing protein [Escherichia coli SE15]
gi|284922554|emb|CBG35641.1| 16S rRNA processing protein [Escherichia coli 042]
gi|291426121|gb|EFE99153.1| ribosome maturation factor rimM [Escherichia coli FVEC1412]
gi|298276988|gb|EFI18504.1| ribosome maturation factor rimM [Escherichia coli FVEC1302]
gi|305854512|gb|EFM54950.1| 16S rRNA-processing protein RimM [Escherichia coli NC101]
gi|306905509|gb|EFN36043.1| 16S rRNA processing protein RimM [Escherichia coli W]
gi|307554621|gb|ADN47396.1| 16S rRNA processing protein [Escherichia coli ABU 83972]
gi|307625842|gb|ADN70146.1| 16S rRNA-processing protein RimM [Escherichia coli UM146]
gi|308927545|gb|EFP73017.1| 16S rRNA processing protein RimM [Shigella dysenteriae 1617]
gi|309702988|emb|CBJ02319.1| 16S rRNA processing protein [Escherichia coli ETEC H10407]
gi|310333092|gb|EFQ00306.1| 16S rRNA processing protein RimM [Escherichia coli 1827-70]
gi|312289787|gb|EFR17676.1| 16S rRNA processing protein RimM [Escherichia coli 2362-75]
gi|312947180|gb|ADR28007.1| 16S rRNA-processing protein RimM [Escherichia coli O83:H1 str. NRG
857C]
gi|313648286|gb|EFS12730.1| 16S rRNA processing protein RimM [Shigella flexneri 2a str. 2457T]
gi|315061922|gb|ADT76249.1| 16S rRNA processing protein [Escherichia coli W]
gi|315137226|dbj|BAJ44385.1| 16S rRNA processing protein RimM [Escherichia coli DH1]
gi|315615306|gb|EFU95941.1| 16S rRNA processing protein RimM [Escherichia coli 3431]
gi|320640790|gb|EFX10288.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
G5101]
gi|320646135|gb|EFX15080.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H- str.
493-89]
gi|320651432|gb|EFX19833.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H- str. H
2687]
gi|320657037|gb|EFX24860.1| 16S rRNA-processing protein RimM [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662701|gb|EFX30045.1| 16S rRNA-processing protein RimM [Escherichia coli O55:H7 str. USDA
5905]
gi|320667518|gb|EFX34442.1| 16S rRNA-processing protein RimM [Escherichia coli O157:H7 str.
LSU-61]
gi|323156262|gb|EFZ42421.1| 16S rRNA processing protein RimM [Escherichia coli EPECa14]
gi|323159127|gb|EFZ45120.1| 16S rRNA processing protein RimM [Escherichia coli E128010]
gi|323167731|gb|EFZ53426.1| 16S rRNA processing protein RimM [Shigella sonnei 53G]
gi|323173075|gb|EFZ58706.1| 16S rRNA processing protein RimM [Escherichia coli LT-68]
gi|323177266|gb|EFZ62854.1| 16S rRNA processing protein RimM [Escherichia coli 1180]
gi|323184517|gb|EFZ69891.1| 16S rRNA processing protein RimM [Escherichia coli 1357]
gi|323188400|gb|EFZ73689.1| 16S rRNA processing protein RimM [Escherichia coli RN587/1]
gi|323377498|gb|ADX49766.1| 16S rRNA processing protein RimM [Escherichia coli KO11]
gi|332088116|gb|EGI93241.1| 16S rRNA processing protein RimM [Shigella boydii 5216-82]
gi|332089239|gb|EGI94346.1| 16S rRNA processing protein RimM [Shigella dysenteriae 155-74]
gi|332344477|gb|AEE57811.1| 16S rRNA processing protein RimM [Escherichia coli UMNK88]
gi|332754032|gb|EGJ84404.1| 16S rRNA processing protein RimM [Shigella flexneri K-671]
gi|332755633|gb|EGJ85996.1| 16S rRNA processing protein RimM [Shigella flexneri 2747-71]
gi|332765586|gb|EGJ95799.1| 16S rRNA processing protein RimM [Shigella flexneri 2930-71]
gi|332999383|gb|EGK18968.1| 16S rRNA processing protein RimM [Shigella flexneri VA-6]
gi|333000792|gb|EGK20366.1| 16S rRNA processing protein RimM [Shigella flexneri K-218]
gi|333000980|gb|EGK20550.1| 16S rRNA processing protein RimM [Shigella flexneri K-272]
gi|333015516|gb|EGK34855.1| 16S rRNA processing protein RimM [Shigella flexneri K-227]
gi|333015852|gb|EGK35188.1| 16S rRNA processing protein RimM [Shigella flexneri K-304]
Length = 182
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181
>gi|172045629|sp|A8ANE1|RIMM_CITK8 RecName: Full=Ribosome maturation factor rimM
Length = 182
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 EPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDSANLLTNCEIVVDSSQLPA--LEDGSYYWKDLMGCQVVTTEGYDLGKVVD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 181
>gi|188588501|ref|YP_001920593.1| 16S rRNA-processing protein RimM [Clostridium botulinum E3 str.
Alaska E43]
gi|238689674|sp|B2V4E4|RIMM_CLOBA RecName: Full=Ribosome maturation factor rimM
gi|188498782|gb|ACD51918.1| 16S rRNA processing protein RimM [Clostridium botulinum E3 str.
Alaska E43]
Length = 165
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++++ + I THG+ GEV + + + D I + + R I
Sbjct: 1 MEEIFKIGQIVNTHGIKGEVKVYPLTEDVNKFKKLKTVLIDGEHRNIQSVKFQKDRVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID ++ A + + R + ELE D + DL +D G++ V
Sbjct: 61 IEGIDTMNDAETYKQKYIEIFRSNAP--ELEADTHYIVDLIGCMVYDADNMELGKIFDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + + IK K LIP K VL+++++ KI++ P+ +
Sbjct: 119 STPSNDVYWIKQP--KELLIPVLKDIVLDIDIENKKIVVKPVRQWQDED 165
>gi|209694241|ref|YP_002262169.1| 16S rRNA-processing protein RimM [Aliivibrio salmonicida LFI1238]
gi|238058947|sp|B6EGC0|RIMM_ALISL RecName: Full=Ribosome maturation factor rimM
gi|208008192|emb|CAQ78335.1| 16S rRNA processing protein RimM [Aliivibrio salmonicida LFI1238]
Length = 175
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K D+++++ G ++G+ G + + S+ + P + Y ++ E + R
Sbjct: 1 MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPLLIKVKDEWVEFSVESWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + G++ A +L++ K EL EDEF+ +L ME QG
Sbjct: 61 -KGLVCKLEGLEVREEAQAYTNLEIAVKADALP--ELSEDEFYWRELFGMEVVTSQGYGL 117
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G V ++ G+ +L +K +K LIPF + ++ + +I +D
Sbjct: 118 GIVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKVIDREAQRIEVDWDPG 174
>gi|271501690|ref|YP_003334716.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech586]
gi|270345245|gb|ACZ78010.1| 16S rRNA processing protein RimM [Dickeya dadantii Ech586]
Length = 182
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
V++ +G+T+G+ G + + S + + Y + + + I N+ +
Sbjct: 12 NPVVLGKLGSTYGIKGWLRVFSSTEDTESIFDYQPWFIRNKGLWQPIEIESWRHHNQDLV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID+ +A+ L + ++ EL+E +++ DL + G G+V
Sbjct: 72 IKIKDIDDREAANLLTNCEIVVDSAQLP--ELDEGDYYWKDLIGCDVVTVGGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF T+ + V+L ++I +D
Sbjct: 130 MMETGSNDVLVVRANLKDAYGVKERLIPFLTEQVIKHVDLSTHRIEVDWDPG 181
>gi|295102424|emb|CBK99969.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
L2-6]
Length = 178
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRELRILKMYRKNKRF 60
+ + + + TTHG+ GE+ ++ + + L R + + I+ + + +
Sbjct: 1 MQQYLEAGKVVTTHGVRGEMKLELWCDGVDFLKKTGRLYASAKGGKCYNIISIRPQGQMA 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ G++++ +A LR Y R D L E ++ DL E D GK +G V
Sbjct: 61 LLQLEGVNDMDAARALRGQVFYFDRSDA---TLPEGRWYVADLIGCEVRDADTGKVYGVV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V + GA I +K+ + ++ P + E N E IL+ PI L++ +
Sbjct: 118 TSVDHPGAQDIYTVKSPSGREYMFPGVDAFLKERNPPEGYILVTPIPGLLDDDFDSEREE 177
Query: 180 D 180
+
Sbjct: 178 E 178
>gi|145224752|ref|YP_001135430.1| 16S rRNA-processing protein [Mycobacterium gilvum PYR-GCK]
gi|315445082|ref|YP_004077961.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
gi|189040844|sp|A4TE78|RIMM_MYCGI RecName: Full=Ribosome maturation factor rimM
gi|145217238|gb|ABP46642.1| 16S rRNA processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315263385|gb|ADU00127.1| 16S rRNA processing protein RimM [Mycobacterium sp. Spyr1]
Length = 173
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + HG+ GE+ ++ ++P L RE I + R
Sbjct: 3 LVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPPRGGAEREYVIESVRTHGDRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G+ + +A LR D E + DEF++ LE + G G+V
Sbjct: 63 LVRFDGVADRDAADALRGTVFLVDSADLPPIE-DPDEFYDHQLEGLTVITTSGGEVGKVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ + L+PF VL V+L + I IDP L
Sbjct: 122 EVLHTAAGELLAVRTADDTEVLVPFVSAIVLSVSLDDQLITIDPPDGLLE 171
>gi|91211942|ref|YP_541928.1| 16S rRNA-processing protein RimM [Escherichia coli UTI89]
gi|237706804|ref|ZP_04537285.1| 16S rRNA-processing protein [Escherichia sp. 3_2_53FAA]
gi|254037684|ref|ZP_04871742.1| ribosome maturation factor rimM [Escherichia sp. 1_1_43]
gi|293411997|ref|ZP_06654720.1| 16S rRNA processing protein RimM [Escherichia coli B354]
gi|293415879|ref|ZP_06658519.1| 16S rRNA processing protein RimM [Escherichia coli B185]
gi|293448958|ref|ZP_06663379.1| 16S rRNA processing protein RimM [Escherichia coli B088]
gi|331643324|ref|ZP_08344455.1| 16S rRNA processing protein RimM [Escherichia coli H736]
gi|331648350|ref|ZP_08349438.1| 16S rRNA processing protein RimM [Escherichia coli M605]
gi|331654065|ref|ZP_08355065.1| 16S rRNA processing protein RimM [Escherichia coli M718]
gi|331674049|ref|ZP_08374811.1| 16S rRNA processing protein RimM [Escherichia coli TA280]
gi|331678599|ref|ZP_08379273.1| 16S rRNA processing protein RimM [Escherichia coli H591]
gi|332280697|ref|ZP_08393110.1| ribosome maturation factor rimM [Shigella sp. D9]
gi|109893048|sp|Q31XD7|RIMM_SHIBS RecName: Full=Ribosome maturation factor rimM
gi|109893049|sp|Q32CY0|RIMM_SHIDS RecName: Full=Ribosome maturation factor rimM
gi|109893050|sp|Q3YYN0|RIMM_SHISS RecName: Full=Ribosome maturation factor rimM
gi|25364897|pir||G91062 hypothetical protein ECs3471 [imported] - Escherichia coli (strain
O157:H7, substrain RIMD 0509952)
gi|25364899|pir||C85907 hypothetical protein yfjA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517030|gb|AAG57719.1|AE005490_14 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109377|gb|AAN81579.1|AE016764_261 16S rRNA processing protein rimM [Escherichia coli CFT073]
gi|13362942|dbj|BAB36894.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856675|gb|AAZ89382.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242115|gb|ABB62825.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246563|gb|ABB67271.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073516|gb|ABE08397.1| 16S rRNA processing protein RimM [Escherichia coli UTI89]
gi|209762548|gb|ACI79586.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762550|gb|ACI79587.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762552|gb|ACI79588.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762554|gb|ACI79589.1| hypothetical protein ECs3471 [Escherichia coli]
gi|209762556|gb|ACI79590.1| hypothetical protein ECs3471 [Escherichia coli]
gi|226839308|gb|EEH71329.1| ribosome maturation factor rimM [Escherichia sp. 1_1_43]
gi|226899844|gb|EEH86103.1| 16S rRNA-processing protein [Escherichia sp. 3_2_53FAA]
gi|291322048|gb|EFE61477.1| 16S rRNA processing protein RimM [Escherichia coli B088]
gi|291432068|gb|EFF05050.1| 16S rRNA processing protein RimM [Escherichia coli B185]
gi|291468768|gb|EFF11259.1| 16S rRNA processing protein RimM [Escherichia coli B354]
gi|323935678|gb|EGB31995.1| 16S rRNA processing protein RimM [Escherichia coli E1520]
gi|323941374|gb|EGB37558.1| 16S rRNA processing protein RimM [Escherichia coli E482]
gi|323946265|gb|EGB42298.1| 16S rRNA processing protein RimM [Escherichia coli H120]
gi|323951193|gb|EGB47069.1| 16S rRNA processing protein RimM [Escherichia coli H252]
gi|323957025|gb|EGB52751.1| 16S rRNA processing protein RimM [Escherichia coli H263]
gi|323960534|gb|EGB56163.1| 16S rRNA processing protein RimM [Escherichia coli H489]
gi|323963917|gb|EGB59410.1| 16S rRNA processing protein RimM [Escherichia coli M863]
gi|323971449|gb|EGB66685.1| 16S rRNA processing protein RimM [Escherichia coli TA007]
gi|323978483|gb|EGB73566.1| 16S rRNA processing protein RimM [Escherichia coli TW10509]
gi|324111244|gb|EGC05226.1| 16S rRNA processing protein RimM [Escherichia fergusonii B253]
gi|324120065|gb|EGC13941.1| 16S rRNA processing protein RimM [Escherichia coli E1167]
gi|331036795|gb|EGI09019.1| 16S rRNA processing protein RimM [Escherichia coli H736]
gi|331042097|gb|EGI14239.1| 16S rRNA processing protein RimM [Escherichia coli M605]
gi|331047447|gb|EGI19524.1| 16S rRNA processing protein RimM [Escherichia coli M718]
gi|331068788|gb|EGI40181.1| 16S rRNA processing protein RimM [Escherichia coli TA280]
gi|331073429|gb|EGI44750.1| 16S rRNA processing protein RimM [Escherichia coli H591]
gi|332103049|gb|EGJ06395.1| ribosome maturation factor rimM [Shigella sp. D9]
Length = 185
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 75 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 133 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 184
>gi|325496324|gb|EGC94183.1| 16S rRNA-processing protein RimM [Escherichia fergusonii ECD227]
Length = 185
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 75 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVID 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 133 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 184
>gi|237729524|ref|ZP_04560005.1| 16S rRNA-processing protein [Citrobacter sp. 30_2]
gi|226908130|gb|EEH94048.1| 16S rRNA-processing protein [Citrobacter sp. 30_2]
Length = 185
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 EPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ SA+ L + ++ LE+ ++ DL + +G G+V
Sbjct: 75 IKLKGVDDRDSANLLTNCEIVVDSSQLPA--LEDGSYYWKDLMGCQVVTTEGYDLGKVVD 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 133 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 184
>gi|148544376|ref|YP_001271746.1| 16S rRNA-processing protein RimM [Lactobacillus reuteri DSM 20016]
gi|184153740|ref|YP_001842081.1| 16S rRNA-processing protein RimM [Lactobacillus reuteri JCM 1112]
gi|227363199|ref|ZP_03847333.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM2-3]
gi|325682696|ref|ZP_08162212.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM4-1A]
gi|166985956|sp|A5VKN5|RIMM_LACRD RecName: Full=Ribosome maturation factor rimM
gi|229564323|sp|B2G819|RIMM_LACRJ RecName: Full=Ribosome maturation factor rimM
gi|148531410|gb|ABQ83409.1| 16S rRNA processing protein RimM [Lactobacillus reuteri DSM 20016]
gi|183225084|dbj|BAG25601.1| 16S rRNA processing protein RimM [Lactobacillus reuteri JCM 1112]
gi|227071805|gb|EEI10094.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM2-3]
gi|324977046|gb|EGC13997.1| 16S rRNA processing protein RimM [Lactobacillus reuteri MM4-1A]
Length = 168
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + I THG+ GEV + + + + Y+ S + L I +
Sbjct: 2 EYYNVGKIVNTHGVRGEVRVLATTDFIDERFAKGNTLYLQQSGEPLPLTIESTRQHKGFV 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G DNI+ + RD +L D + L++ +++ + ++ G++ G++
Sbjct: 62 LVKFVGYDNINDVEQFRDHELMVSADD--QQPLDDGQYYYHQIIGLDVETTDGRHLGKIK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA + ++ ++ L+P V V+L +N + ++ +
Sbjct: 120 EILSPGANDVWVVERPEKRDLLLPVIDEVVKNVDLDKNFVTVELMEGL 167
>gi|51595185|ref|YP_069376.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis IP
32953]
gi|153949535|ref|YP_001402184.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis IP
31758]
gi|186894200|ref|YP_001871312.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis
PB1/+]
gi|59798664|sp|Q66E58|RIMM_YERPS RecName: Full=Ribosome maturation factor rimM
gi|166985979|sp|A7FLQ6|RIMM_YERP3 RecName: Full=Ribosome maturation factor rimM
gi|238691407|sp|B2K5Y9|RIMM_YERPB RecName: Full=Ribosome maturation factor rimM
gi|51588467|emb|CAH20075.1| 16S rRNA processing protein [Yersinia pseudotuberculosis IP 32953]
gi|152961030|gb|ABS48491.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis IP
31758]
gi|186697226|gb|ACC87855.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis
PB1/+]
Length = 182
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 10 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + +++ LEED+++ DL + G G++
Sbjct: 70 LIIKVKGVDDRDAANLLTNCEIFVDSTQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 128 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 181
>gi|284802239|ref|YP_003414104.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284995381|ref|YP_003417149.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
gi|284057801|gb|ADB68742.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284060848|gb|ADB71787.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
Length = 169
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K + LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKETQLTN--LEENEFYFHEIIGCTVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 TEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 169
>gi|114571436|ref|YP_758116.1| 16S rRNA processing protein RimM [Maricaulis maris MCS10]
gi|122315003|sp|Q0AKL5|RIMM_MARMM RecName: Full=Ribosome maturation factor rimM
gi|114341898|gb|ABI67178.1| 16S rRNA processing protein RimM [Maricaulis maris MCS10]
Length = 185
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 1 MVKL-DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKN 57
M + D LV +A I HG+ GE + S+A NP D +Y L + L
Sbjct: 1 MTEPADDLVFIAAIAGAHGVRGECKVKSFAGNPADAFKYGAFLDIDGKTILTPKAARPVK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F+ F+ + A L+ KL+ R ELEEDEF+++DL ++ G G
Sbjct: 61 DGFVVRFAEPLDRDKAQALKGTKLHVLRSALP--ELEEDEFYHSDLLGLKVQGLDGAPMG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEK--TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ V+NFG+G +LEI T ++ ++++PFT+ V V++ E I IDP + +
Sbjct: 119 TLKAVHNFGSGDLLEITGTPDRNGSWMLPFTREFVPHVSIAEGVITIDPPEDV--GSKAE 176
Query: 176 NPQYDCPLD 184
P D
Sbjct: 177 EEGGGAPDD 185
>gi|47097598|ref|ZP_00235125.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258611625|ref|ZP_05234263.2| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258612340|ref|ZP_05270099.2| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
gi|47014029|gb|EAL05035.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258601991|gb|EEW15316.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258611013|gb|EEW23621.1| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
Length = 169
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K D LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKETQLTD--LEENEFYFHEIIGCTVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 TEILTPGANDVWVVKGADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 169
>gi|268593128|ref|ZP_06127349.1| 16S rRNA processing protein RimM [Providencia rettgeri DSM 1131]
gi|291311400|gb|EFE51853.1| 16S rRNA processing protein RimM [Providencia rettgeri DSM 1131]
Length = 181
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ +++ +G +G+ G + + S + + Y + S + + I NK
Sbjct: 10 PENPIVLGKLGAAYGIRGWLKVFSSTEHAESIFEYQPWFIQRSGQWQHIEIEDWKHHNKD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I +G+D+ +A+ L + ++ + E+E++ DL + QG G +
Sbjct: 70 IIVKLNGVDDRDAAALLTNFEIAVDSTQLPEL---ENEYYWKDLMGCQVVTLQGYDLGTI 126
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 127 TDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLDAKLIEVDWDPG 180
>gi|251779615|ref|ZP_04822535.1| 16S rRNA processing protein RimM [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243083930|gb|EES49820.1| 16S rRNA processing protein RimM [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 165
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++++ + I THG+ GEV + + + D + I + + R I
Sbjct: 1 MEEIFKIGQIVNTHGIKGEVKVYPLTEDVNKFKKLKTVLIDGEDRNIQSVKFQKDRVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID ++ A + + R + ELE D + DL +D G++ V
Sbjct: 61 IEGIDTMNDAETYKQKYIEIFRSNAP--ELEADTHYIVDLIGCMVYDADNMELGKIFDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + + IK K LIP K VL+++++ KI++ P+ +
Sbjct: 119 STPSNDVYWIKQP--KELLIPVLKDIVLDIDIENKKIVVKPVRQWQDED 165
>gi|183597520|ref|ZP_02959013.1| hypothetical protein PROSTU_00794 [Providencia stuartii ATCC 25827]
gi|188023166|gb|EDU61206.1| hypothetical protein PROSTU_00794 [Providencia stuartii ATCC 25827]
Length = 182
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + S + + + NK I
Sbjct: 12 NPIVLGKLGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRSGQWQHIELEDWKHHNKDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ EL+ +E++ DL + QG G +
Sbjct: 72 LKLKGVDDRDAATLLTNFEIVVDSAQLP--ELDNNEYYWKDLMGCQVVTLQGYNLGTITD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L+ I +D
Sbjct: 130 MMETGSNDVIVIKANLKDAFGIKERLVPFLDGQVIKKVDLKSKLIEVDWDPG 181
>gi|23098990|ref|NP_692456.1| 16S rRNA processing protein [Oceanobacillus iheyensis HTE831]
gi|33301526|sp|Q8EQZ8|RIMM_OCEIH RecName: Full=Ribosome maturation factor rimM
gi|22777218|dbj|BAC13491.1| 16S rRNA processing protein [Oceanobacillus iheyensis HTE831]
Length = 170
Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 6/165 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+ I THG+ GEV + + + Y+ + + + L I + F
Sbjct: 8 IGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKGFDLLQFK 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G NI+ + L L D LEED ++ ++ + +G+ G+V + +
Sbjct: 68 GYGNINEVEAFKGLMLSIDEDQLTD--LEEDAYYYHEIVGCKVVTSEGEELGKVKEILSP 125
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + ++ K LIP+ + V +V+++ I + + L+
Sbjct: 126 GANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKIIKVQLMEGMLD 170
>gi|167032081|ref|YP_001667312.1| 16S rRNA-processing protein RimM [Pseudomonas putida GB-1]
gi|189040848|sp|B0KRI2|RIMM_PSEPG RecName: Full=Ribosome maturation factor rimM
gi|166858569|gb|ABY96976.1| 16S rRNA processing protein RimM [Pseudomonas putida GB-1]
Length = 178
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+++ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLEDRDEARLLSGYEICIARSLLPN--LAADEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
V + GA ++ +K + L+P+T VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVMVVKPCAGSLDDRERLLPYTAQCVLAIDLEAGVMRVE 173
>gi|104783232|ref|YP_609730.1| 16S rRNA-processing protein RimM [Pseudomonas entomophila L48]
gi|122402143|sp|Q1I5Y9|RIMM_PSEE4 RecName: Full=Ribosome maturation factor rimM
gi|95112219|emb|CAK16946.1| 16S rRNA processing protein [Pseudomonas entomophila L48]
Length = 178
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYPRWTLRHEGKVKQVELVSGRGSQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R + L DE++ L ++ ++ +G+
Sbjct: 67 GLVVKLKGLDDRDEARLLSGHEICISRSLLPN--LATDEYYWYQLVGLKVINQDEHLFGK 124
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ + GA +L +K + L+P+T VL V+L+ + ++
Sbjct: 125 IDHLLETGANDVLVVKPCAGSLDDRERLLPYTGQCVLAVDLEAGVMRVE 173
>gi|295103454|emb|CBL00998.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
SL3/3]
Length = 178
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + + TTHG+ GE+ ++ + + + R + + +IL + + +
Sbjct: 1 MQQYLEAGKVVTTHGVRGEMKLELWCDGVDFLKKVGRLYPSAQGGKAYKILSIRPQGQMA 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ GI ++ +A LR Y R D L ++ DL E D GK +G V
Sbjct: 61 LLQLEGISDMDAARALRGQVFYFDRNDA---TLPAGRWYVADLIGCEVRDADTGKVYGVV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V + GA I +K K ++ P + E N E IL+ PI L++ +
Sbjct: 118 TSVDHPGAQDIYTVKAPGGKEYMFPGVDAFLKERNPPEGYILVTPIPGLLDDDFDSEREE 177
Query: 180 D 180
+
Sbjct: 178 E 178
>gi|77359891|ref|YP_339466.1| 16S rRNA processing protein [Pseudoalteromonas haloplanktis TAC125]
gi|109893034|sp|Q3IEC8|RIMM_PSEHT RecName: Full=Ribosome maturation factor rimM
gi|76874802|emb|CAI86023.1| 16S rRNA processing protein [Pseudoalteromonas haloplanktis TAC125]
Length = 178
Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G +G+ G + + S+ ++P + + + + L ++ R NK FIA
Sbjct: 10 IVVGKLGAPYGIKGWLKVHSFTDDPAGIFDFSPWLIGQQGKWQTLEVVDWRRHNKGFIAK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ +++ A ++ EL + EF+ DL M +G G V +
Sbjct: 70 FAQVNDRDEAVAYTHAEISMDSAQLP--ELPQGEFYWRDLIGMSVVTDKGYDLGIVDDLM 127
Query: 124 NFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
G+ +L +K + LIPF T ++EV +I +D
Sbjct: 128 ETGSNDVLVVKANSKDAFGQAERLIPFLTDTVIIEVKHDAREITVDWDPG 177
>gi|218528699|ref|YP_002419515.1| 16S rRNA-processing protein RimM [Methylobacterium chloromethanicum
CM4]
gi|254797755|sp|B7KZ57|RIMM_METC4 RecName: Full=Ribosome maturation factor rimM
gi|218521002|gb|ACK81587.1| 16S rRNA processing protein RimM [Methylobacterium chloromethanicum
CM4]
Length = 223
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V NFG G +LEI+ T L+PFTK V +++ K++ DP + P
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADPP------DDLFAPPGP 216
Query: 181 CPLDSAG 187
P D G
Sbjct: 217 KPADDPG 223
>gi|119946971|ref|YP_944651.1| 16S rRNA processing protein RimM [Psychromonas ingrahamii 37]
gi|166226470|sp|A1SZY7|RIMM_PSYIN RecName: Full=Ribosome maturation factor rimM
gi|119865575|gb|ABM05052.1| 16S rRNA processing protein RimM [Psychromonas ingrahamii 37]
Length = 175
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K + +++ G HG+ G + + SY ++P + Y +E+ I R
Sbjct: 1 MSKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F+A G D A L L+L + LEED F+ DL + G
Sbjct: 61 SNGFVAKIVGFDVREEAQALVGLELLVDSDKLPN--LEED-FYWRDLIGCQVKTDNGYDL 117
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K +K LIPF K + V++ I ++
Sbjct: 118 GVVTEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNVDITSKLIQVN 170
>gi|28868681|ref|NP_791300.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969057|ref|ZP_03397196.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|301384048|ref|ZP_07232466.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
Max13]
gi|302058754|ref|ZP_07250295.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
K40]
gi|302131715|ref|ZP_07257705.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|37999587|sp|Q886V1|RIMM_PSESM RecName: Full=Ribosome maturation factor rimM
gi|28851920|gb|AAO54995.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926055|gb|EEB59611.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|331016303|gb|EGH96359.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 179
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|167769123|ref|ZP_02441176.1| hypothetical protein ANACOL_00446 [Anaerotruncus colihominis DSM
17241]
gi|167668763|gb|EDS12893.1| hypothetical protein ANACOL_00446 [Anaerotruncus colihominis DSM
17241]
Length = 185
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSNDNRELRILKMYRKN 57
M K + + I TTHG+ GEV + + + P L ++ L + ++ + +
Sbjct: 16 MKK--QYLESGKIVTTHGVRGEVRVQPWCDTPGFLTQFACLYLDARGSQARVVERARVHK 73
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYW 116
I F G++N+ A+ LR +Y R D ELEE E F DL D G +
Sbjct: 74 NIVIVKFEGVENVEDAAGLRGKTVYIDRAD---VELEEGECFVQDLIGCTVRDADTGADY 130
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQV V GA + +++ + L+P VL +L I I P+ ++
Sbjct: 131 GQVYDVRATGANDVYYLRDAAGRERLVPAIADVVLAKDLDAGIITIRPLEGLFDD 185
>gi|402166|emb|CAA52886.1| 21kD protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 183
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR-F 60
+ V++ +G+++G+ G + + S + + Y + + +++++ + + +
Sbjct: 12 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKKHHNQDL 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 72 IIKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVI 129
Query: 121 GVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 182
>gi|84498357|ref|ZP_00997154.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
gi|84381857|gb|EAP97740.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
Length = 183
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--------NRYVLYSNDNRELRILK 52
M + +L+A IG HGL GEV + ++ ++P + R L +
Sbjct: 1 MPRSSNALLVARIGKPHGLRGEVTVQTHTDDPEARYVPGTVFDTEAQPGTGVPRTLTVST 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETFDR 111
+ ++ F+ I + A LR +L+ + + E +ED+ F+ DL + D
Sbjct: 61 ARLHRQIWLLGFAEIPDRTGAESLRGTQLFLDPDEADEVESDEDDGFYEHDLVGLAVQDP 120
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G+V G+ +LE++ T + L+PF + V E++++ +++D A +
Sbjct: 121 SGAVLGEVTGLVLGAVQDLLEVRLTNRRDVLVPFVEAIVTEIDIEAGHVVVDAPAGLFD 179
>gi|254559240|ref|YP_003066335.1| 16S rRNA processing protein [Methylobacterium extorquens DM4]
gi|254266518|emb|CAX22282.1| putative 16S rRNA processing protein [Methylobacterium extorquens
DM4]
Length = 223
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ + E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGEVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V NFG G +LEI T L+PFTK V +++ K++ DP + P
Sbjct: 163 VPNFGGGDLLEICPAAGGPTALLPFTKAFVPSLDIAGGKVVADPP------DDLFAPPGP 216
Query: 181 CPLDSAG 187
P D G
Sbjct: 217 KPADDPG 223
>gi|163850096|ref|YP_001638139.1| 16S rRNA processing protein RimM [Methylobacterium extorquens PA1]
gi|209573569|sp|A9W0G2|RIMM_METEP RecName: Full=Ribosome maturation factor rimM
gi|163661701|gb|ABY29068.1| 16S rRNA processing protein RimM [Methylobacterium extorquens PA1]
Length = 223
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----FI 61
LVL+ G HGL+GEV + S+ + P+ + Y L+++D R L + + I
Sbjct: 44 LVLLGEFGRPHGLHGEVRLKSHTSEPLAIAGYGPLHASDGRTLELANVRPAAGSSPDLLI 103
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ A L + L R+ E +EDEFF TDL + D G G +
Sbjct: 104 VRVKGVDDRTGAEALNRVTLAIARERLGKVE-DEDEFFLTDLIGLTVEDGAGTVIGTIVA 162
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V NFG G +LEI+ T L+PFTK V +++ K++ DP + P
Sbjct: 163 VPNFGGGDLLEIRPAAGGPTALLPFTKAFVPSLDIAGGKVVADPP------DDLFAPPGP 216
Query: 181 CPLDSAG 187
P D G
Sbjct: 217 KPADDPG 223
>gi|59798128|sp|Q5WFN5|RIMM_BACSK RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID------LNRYVLYSNDNRELRILKMYRKN 57
+ + + THG+ GEV + S + P + + + L ++ +R +
Sbjct: 1 MTNWYNVGRLVNTHGVRGEVRVLSNTDFPEERYANGSVLKVAKSPQAEGTLVTVRSHRTH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + TF G ++I+ + LY EL+E E++ ++ D +G
Sbjct: 61 KNFDLLTFEGYNSINEVECFKGSYLYVSEDQL--SELDEHEYYYHEIIGCTVVDEEGTKL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G++ + GA + + K L+P+ + V EV+++ +I + I GL++
Sbjct: 119 GKIKDIIETGANDVWVVDRQQRKDLLLPYIEEVVKEVDVENKRIRV-HIMEGLDDE 173
>gi|315303689|ref|ZP_07874207.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
gi|313627938|gb|EFR96553.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
Length = 172
Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKN 57
++K+ + I THGL GE+ + + + + + Y+ N + + I++ +RK+
Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFANERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K F + F G IH +++ L + D LEE+EF+ ++ G+
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKISEKQLTD--LEENEFYFHEIIGCSVVTTDGEEL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + +K +K LIP V E+N+ + KI I+ + L+
Sbjct: 119 GEITEILTPGANDVWVVKGNDKKEKLIPXXXDVVKEINISDKKITIEVMEGLLD 172
>gi|257438678|ref|ZP_05614433.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
A2-165]
gi|257198907|gb|EEU97191.1| 16S rRNA processing protein RimM [Faecalibacterium prausnitzii
A2-165]
Length = 184
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 7/181 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ K + + TTHG+ GE+ ++ + + + R R +I + + +
Sbjct: 7 MQKYLEAGKVVTTHGVRGEMKLELWCDGVAFLKKVGRLYTTPQGGRCYKITSIRPQGQMA 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ G+ ++ +A LR Y R D L +++ DL E D GK +G V
Sbjct: 67 LLQLEGVSDMDAARALRGQVFYFDRDDA---TLPAGKWYVADLIGCEVRDADTGKVYGVV 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V + GA I +K K ++ P + E N E +L+ PI L++ +
Sbjct: 124 TSVDHPGAQDIYTVKAPSGKEYMFPGVDAFLKERNPPEGYLLVTPIPGLLDDDFDSEREE 183
Query: 180 D 180
+
Sbjct: 184 E 184
>gi|330895931|gb|EGH28215.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330950743|gb|EGH51003.1| 16S rRNA-processing protein RimM [Pseudomonas syringae Cit 7]
gi|330975466|gb|EGH75532.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 179
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|313115223|ref|ZP_07800706.1| 16S rRNA processing protein RimM [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622452|gb|EFQ05924.1| 16S rRNA processing protein RimM [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 178
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + + TTHG+ GE+ ++ + + + R + R +I+ + + +
Sbjct: 1 MQQYLEAGKVVTTHGVRGEMKLELWCDGVNFLKKVGRLYPSAQGGRAYKIVSIRAQGQMA 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ G+D++ +A LR Y R D L ++ DL E D G+ +G V
Sbjct: 61 LLQLEGVDDMDAARALRGQVFYFDRNDA---TLPAGRWYVADLIGCEVRDADTGRVYGVV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V + GA I +K K ++ P + E N E +L+ PI L++ +
Sbjct: 118 TSVDHPGAQDIYTVKAPNGKEYMFPGVDAFLKERNPPEGYLLVTPIPGLLDDDFDSEREE 177
Query: 180 D 180
+
Sbjct: 178 E 178
>gi|312962852|ref|ZP_07777339.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
gi|311282879|gb|EFQ61473.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
Length = 178
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L +Y ++ +++ ++ +K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKTWTLKREGSVKQVELVSGRGSDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ LE ++ D+ G+ G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLEGLKVIDQLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGANDVMVVKPCAGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|66044531|ref|YP_234372.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
B728a]
gi|75503052|sp|Q4ZWY8|RIMM_PSEU2 RecName: Full=Ribosome maturation factor rimM
gi|63255238|gb|AAY36334.1| RimM protein:PRC-barrel [Pseudomonas syringae pv. syringae B728a]
gi|330969026|gb|EGH69092.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 179
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|229592397|ref|YP_002874516.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens SBW25]
gi|259585649|sp|C3K1H0|RIMM_PSEFS RecName: Full=Ribosome maturation factor rimM
gi|229364263|emb|CAY51980.1| 16S rRNA processing protein [Pseudomonas fluorescens SBW25]
Length = 178
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L +Y ++ +++ ++ +K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKTWTLKREGSVKQVELVSGRGSDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ LE ++ D+ G+ +G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLEGLKVIDQLGQLFGKID 126
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K + L+P+TK VL V+L+ ++ ++
Sbjct: 127 HLLETGANDVMVVKPCAGSLDDRERLLPYTKQCVLAVDLEAGEMKVE 173
>gi|329847287|ref|ZP_08262315.1| 16S rRNA processing protein RimM [Asticcacaulis biprosthecum C19]
gi|328842350|gb|EGF91919.1| 16S rRNA processing protein RimM [Asticcacaulis biprosthecum C19]
Length = 166
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M K LVL+A +G HG+ GE + S+ ++P+ L + L + ++ R +K
Sbjct: 1 MTKP-NLVLVAQVGAPHGVQGEFKLMSFMDDPLSLLEHSPLLDVAGKPALVVTKARAHKG 59
Query: 60 FIATF-SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F + +A +L+ KLY R D D +E+E++ TDL M+ D G G+
Sbjct: 60 ALLVFAEQAPDRTAAEKLKGQKLYVDRADLPDT--DEEEYYVTDLIGMDVVDTSGNMVGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V V NFGAG +L++K +F +PFT V +V+L E +I++D
Sbjct: 118 VVNVDNFGAGDLLDVKPLEGVSFYVPFTLAHVPQVHLAEGRIVVD 162
>gi|160943019|ref|ZP_02090257.1| hypothetical protein FAEPRAM212_00496 [Faecalibacterium prausnitzii
M21/2]
gi|158445713|gb|EDP22716.1| hypothetical protein FAEPRAM212_00496 [Faecalibacterium prausnitzii
M21/2]
Length = 178
Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + + TTHG+ GE+ ++ + + + R + + +IL + + +
Sbjct: 1 MQQYLEAGKVVTTHGVRGEMKLELWCDGVDFLKKVGRLYPSAQGGKAYKILSIRPQGQMA 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ G+ ++ +A LR Y R D L ++ DL E D GK +G V
Sbjct: 61 LLQLEGVSDMDAARALRGQVFYFDRNDA---TLPAGRWYVADLIGCEVRDADTGKVYGVV 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V + GA I +K K ++ P + E N E IL+ PI L++ +
Sbjct: 118 TSVDHPGAQDIYTVKAPGGKEYMFPGVDAFLKERNPPEGYILVTPIPGLLDDDFDSEREE 177
Query: 180 D 180
+
Sbjct: 178 E 178
>gi|194466486|ref|ZP_03072473.1| 16S rRNA processing protein RimM [Lactobacillus reuteri 100-23]
gi|227544360|ref|ZP_03974409.1| 16S rRNA processing protein RimM [Lactobacillus reuteri CF48-3A]
gi|300909779|ref|ZP_07127240.1| 16S rRNA processing protein RimM [Lactobacillus reuteri SD2112]
gi|194453522|gb|EDX42419.1| 16S rRNA processing protein RimM [Lactobacillus reuteri 100-23]
gi|227185623|gb|EEI65694.1| 16S rRNA processing protein RimM [Lactobacillus reuteri CF48-3A]
gi|300893644|gb|EFK87003.1| 16S rRNA processing protein RimM [Lactobacillus reuteri SD2112]
Length = 168
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + I THG+ GEV + + + + Y+ S + L I +
Sbjct: 2 EYYNVGKIVNTHGVRGEVRVLATTDFIDERFAKGNTLYLQQSGEPLPLTIESTRQHKGFV 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G DNI+ + RD +L D + L++ +++ + ++ G++ G++
Sbjct: 62 LVKFVGYDNINDVEQFRDHELMVSADD--QQPLDDGQYYYHQIIGLDVETTDGRHLGKIK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA + ++ ++ L+P V V+L +N + ++ +
Sbjct: 120 EILSPGANDVWVVERPEKRDLLLPVIDDVVKNVDLDKNLVTVELMEGL 167
>gi|219871999|ref|YP_002476374.1| 16S rRNA-processing protein RimM [Haemophilus parasuis SH0165]
gi|254797751|sp|B8F7X4|RIMM_HAEPS RecName: Full=Ribosome maturation factor rimM
gi|219692203|gb|ACL33426.1| 16S rRNA-processing protein [Haemophilus parasuis SH0165]
Length = 175
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S P + Y + +++ + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEYPESIFDYQPWFLKIKGQWQQVELESWRYHNNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ +A L + ++ F ELEE +++ DL + + +G G V +
Sbjct: 68 KGTEDRETAQLLTNAEIGVDLAVFP--ELEEGDYYWHDLIGCQVVNLEGYAMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKAGSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|323700098|ref|ZP_08112010.1| 16S rRNA processing protein RimM [Desulfovibrio sp. ND132]
gi|323460030|gb|EGB15895.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
ND132]
Length = 195
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRK 56
M K + + + HG+ GE I SYA++P +R L+ +D R + +
Sbjct: 1 MKKEPGFIPVGGVVKAHGIRGEFGIKSYADSPALFDRTPLFLSDGKGRPRPIEVTSWREH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ T + + A LR +L + D E +E E + + G
Sbjct: 61 KGLVLMTSPQVTDRDQAEALRGRELLVREADLP--EPDEGEHYLYQMIGCRVVLTDGTEV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G Y G I+N L+P VL+V+L I+++P L+
Sbjct: 119 GELVGFYETGEQDTWVIENGEGTEILLPAVPEFVLDVDLDTETIVVEPPEGLLD 172
>gi|302185526|ref|ZP_07262199.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
642]
Length = 179
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 174
>gi|229829007|ref|ZP_04455076.1| hypothetical protein GCWU000342_01092 [Shuttleworthia satelles DSM
14600]
gi|229792170|gb|EEP28284.1| hypothetical protein GCWU000342_01092 [Shuttleworthia satelles DSM
14600]
Length = 172
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKN 57
+ + I +THGL GEV + + Y EL I+ +
Sbjct: 1 MQDYFQVGVITSTHGLKGEVKVYPTTEESRRFDDLCGQKVYAGRDGSLEELTIVSVRYFK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K+ I F+ +NI S LR +L R+ LEE E++ DL ++ G+ G
Sbjct: 61 KQVILRFAEKNNIDEVSSLRQARLLISREQ--ALPLEEGEYYVADLLGLKVVADDGRELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V GA + I + +IP + VL+ +L+ +IL+ + +
Sbjct: 119 ILTDVLTTGANDVYVIGRQGQSDLMIPAIRQCVLKTDLEAGEILVHLLPGLED 171
>gi|296111838|ref|YP_003622220.1| 16S rRNA processing protein [Leuconostoc kimchii IMSNU 11154]
gi|295833370|gb|ADG41251.1| 16S rRNA processing protein [Leuconostoc kimchii IMSNU 11154]
Length = 173
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 7/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNR----ELRILKMYR 55
M + + TI THG+ GEV I + + D + D + +++
Sbjct: 1 MTNTENYFKVGTIVNTHGIRGEVKIMAITDFAADRFKKGAELQIDTKQGFLPMKVQSSRL 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F GI NI+ + + +Y + +EL++DE++ ++ + D G
Sbjct: 61 HKNMWLVLFEGITNINDIEKYKTHDIYVYGE--ARQELDDDEYYYDEIIDSRVVDLDGHE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + A + +K + LIP V V+++++ I ID + L+
Sbjct: 119 IGVVSDIMTTPANDVWTVKREGQPDALIPMIDDVVKNVDVEQHLITIDALEGLLD 173
>gi|104774247|ref|YP_619227.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514337|ref|YP_813243.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122274931|sp|Q049R7|RIMM_LACDB RecName: Full=Ribosome maturation factor rimM
gi|122397101|sp|Q1G9L3|RIMM_LACDA RecName: Full=Ribosome maturation factor rimM
gi|103423328|emb|CAI98171.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093652|gb|ABJ58805.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325126033|gb|ADY85363.1| Probable 16S rRNA processing protein rimM [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 167
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFIA 62
+ I THGL GEV + + P D R + +D+RE+ + + ++
Sbjct: 2 NYYNVGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
TF+ I +I A +L+ ++ +D EL + ++ +L + D + G+ G++
Sbjct: 62 TFAEITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA I E+ + K+F +P+ V V++ + ++ ++ +
Sbjct: 120 IEAPGANDIWEVTDKNGKSFWLPYIPQVVKSVDIDKKEVRVELMEGL 166
>gi|317493966|ref|ZP_07952383.1| 16S rRNA processing protein RimM [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918293|gb|EFV39635.1| 16S rRNA processing protein RimM [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 180
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 1 MVKLDK----LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILK 52
MV + K V++ +G+++G+ G + + S + + Y + + + + +
Sbjct: 1 MVTMSKQLTNPVVLGKLGSSYGIRGWLRVFSSTEDAESIFEYQPWFIQQAGQWQHVELES 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R N+ + G+D+ +A+ L + ++ + ELE+ +++ DL +
Sbjct: 61 WKRHNQDLVIKIKGVDDRDAANALTNREIVVEESQLP--ELEDGDYYWKDLMGCQVVTTA 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIA 166
G G++ + G+ ++ +K ++ K LIPF + +V+L + + +D
Sbjct: 119 GYELGKIIDMMETGSNDVMVVKANLKDAFGIKERLIPFLDGQVIKKVDLATHIVEVDWDP 178
Query: 167 A 167
Sbjct: 179 G 179
>gi|258612038|ref|ZP_05243865.2| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300766440|ref|ZP_07076395.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
gi|258607916|gb|EEW20524.1| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300512864|gb|EFK39956.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
Length = 169
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K D LEE+EF+ ++ GK G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGKELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 TEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|120403181|ref|YP_953010.1| 16S rRNA-processing protein RimM [Mycobacterium vanbaalenii PYR-1]
gi|166226458|sp|A1T754|RIMM_MYCVP RecName: Full=Ribosome maturation factor rimM
gi|119955999|gb|ABM13004.1| 16S rRNA processing protein RimM [Mycobacterium vanbaalenii PYR-1]
Length = 172
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + HG+ GE+ +D ++P L RE I + R
Sbjct: 3 LVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRPARGGAEREFVIESVRSHGDRM 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A LR + E + DEF++ LE M G+ G V
Sbjct: 63 LIRLQGVGDRDAADALRGTLFLVDSAELPPIE-DPDEFYDHQLEGMAVSTTGGQPVGTVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L +++ L+PF V+ V+L +N I IDP L+
Sbjct: 122 EVLHTAAGELLAVRDPDGAEVLVPFVSAIVVSVSLADNAIEIDPPEGLLD 171
>gi|318056566|ref|ZP_07975289.1| 16S rRNA-processing protein RimM [Streptomyces sp. SA3_actG]
gi|318077468|ref|ZP_07984800.1| 16S rRNA-processing protein RimM [Streptomyces sp. SA3_actF]
Length = 235
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNTLLIAEIDPEEVPEDPE-EFYDYQLMDLDVVTEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
+ + + ++ +IPF + V E++L E + +I+P L+ + + +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINPPRGLLDLDEADVASERETS 181
Query: 183 LDSAGKKS 190
G
Sbjct: 182 RTETGAAP 189
>gi|311278434|ref|YP_003940665.1| 16S rRNA processing protein RimM [Enterobacter cloacae SCF1]
gi|308747629|gb|ADO47381.1| 16S rRNA processing protein RimM [Enterobacter cloacae SCF1]
Length = 182
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 1 MVKLD------KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRI 50
M K D + +++ +G+ +G+ G + + S + + Y + + + + +
Sbjct: 1 MSKQDAAKAPVEPIVLGKMGSCYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQAVEL 60
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
N+ I G+D+ +A+ L + ++ ELEE +++ DL +
Sbjct: 61 EGWRHHNQDIIIKLKGVDDRDAANLLTNCEIVVDSSQLP--ELEEGDYYWKDLMGCQVVT 118
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDP 164
+G G+V + G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 119 TEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDW 178
Query: 165 IAA 167
Sbjct: 179 DPG 181
>gi|300905072|ref|ZP_07122881.1| 16S rRNA processing protein RimM [Escherichia coli MS 84-1]
gi|301305747|ref|ZP_07211834.1| 16S rRNA processing protein RimM [Escherichia coli MS 124-1]
gi|300403023|gb|EFJ86561.1| 16S rRNA processing protein RimM [Escherichia coli MS 84-1]
gi|300839001|gb|EFK66761.1| 16S rRNA processing protein RimM [Escherichia coli MS 124-1]
gi|315253135|gb|EFU33103.1| 16S rRNA processing protein RimM [Escherichia coli MS 85-1]
Length = 183
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 13 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 72
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ +LEE +++ DL + +G G+V
Sbjct: 73 IKLKGVDDRDAANLLTNCEIVVDSSKLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 130
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 131 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 182
>gi|315497157|ref|YP_004085961.1| 16S rRNA processing protein rimm [Asticcacaulis excentricus CB 48]
gi|315415169|gb|ADU11810.1| 16S rRNA processing protein RimM [Asticcacaulis excentricus CB 48]
Length = 180
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 3/177 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFI 61
+ +LV +A + + G+ GE + S+ ++P+ + Y N E L I +
Sbjct: 1 MTELVFVAQVAASFGVRGEFKLISHMDDPLSVLEYNPLYNPRGEPALVITAARVHKGALV 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI + A L+ LKLY +R+D + E +ED+F+ TDL +E G G++ G
Sbjct: 61 VKAEGISDKDKADALKGLKLYVRREDLPEVE-DEDDFYITDLIGLEVRSTDGSVIGRLKG 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V +FGAG +L+I+ ++ + FT+ V EVN+ ++I P + N ++ Q
Sbjct: 120 VEDFGAGDLLDIQPKGGASYYLMFTRENVPEVNIGAGYVVISPPQEVVVNEPLETDQ 176
>gi|269140192|ref|YP_003296893.1| 16S rRNA-processing protein [Edwardsiella tarda EIB202]
gi|267985853|gb|ACY85682.1| 16S rRNA-processing protein [Edwardsiella tarda EIB202]
gi|304560023|gb|ADM42687.1| 16S rRNA processing protein RimM [Edwardsiella tarda FL6-60]
Length = 181
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
V++ +G+ +G+ G + + S + + Y + + + + N+ +
Sbjct: 10 SNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAIELESWRSHNQDW 69
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ +A+ + + ++ L+E +++ DL + G G+V
Sbjct: 70 VVKIKGIDDRDAANAMVNREIIVDESQMPS--LDEGDYYWKDLMGCQVVTVSGYALGKVT 127
Query: 121 GVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ K LIPF + +V+L I +D
Sbjct: 128 AMMETGSNDVLVVKANLKDAFGMKERLIPFLDGQVIKKVDLTAKSIEVDWDPG 180
>gi|259503523|ref|ZP_05746425.1| 16S rRNA processing protein RimM [Lactobacillus antri DSM 16041]
gi|259168601|gb|EEW53096.1| 16S rRNA processing protein RimM [Lactobacillus antri DSM 16041]
Length = 168
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + I THG+ GEV + + + Y+ ++ EL + +
Sbjct: 2 QFYNVGKIVNTHGIRGEVRVLPTTDFVKERFAPQQKLYLQEADGPLELTVEGARQHKGFI 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G DNI++ R +L D + LE+ +++ + + G+ G++
Sbjct: 62 LVKFAGYDNINAVEGFRGHELMVSAAD--QQPLEDGQYYYHQIIGLAVKTVAGEELGRIK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + ++ + L+P V V+L + + ++ +
Sbjct: 120 EILAPGANDVWVVERPGKTDLLLPVIDDVVKRVDLDQGLVTVELMEGL 167
>gi|227329615|ref|ZP_03833639.1| 16S rRNA-processing protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 182
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
++M IG+ +G+ G + + S + + Y + + + + I N+ I
Sbjct: 12 NPIVMGKIGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQSKSGWQLVEIEGWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+ +A+ L + ++ D L E +++ DL + G G++
Sbjct: 72 IKVKGADDRDAANLLTNCEIVVDSSQLPD--LGEGDYYWKDLIGCQVVTVTGYELGKIID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF T+ V V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSAQTIEVDWDPG 181
>gi|168188035|ref|ZP_02622670.1| 16S rRNA processing protein RimM [Clostridium botulinum C str.
Eklund]
gi|169294123|gb|EDS76256.1| 16S rRNA processing protein RimM [Clostridium botulinum C str.
Eklund]
Length = 162
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THG+ GEV + +N D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGIKGEVKVMPSTDNVERFKELNEAYIDGNMMEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
ID+I A +L++ + R+ K L+ED ++ D+ +D K G + +
Sbjct: 61 IKDIDSIEDAQKLKNKYIKVNRK--KAVALDEDCYYEADIIGCTVYDENEKQLGTIDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + IK E LIP K ++++++ KI+I P+
Sbjct: 119 RTGSNDVYWIK--GENEILIPAIKSIIVDIDVTNKKIIIKPLE 159
>gi|167856651|ref|ZP_02479344.1| 16S rRNA-processing protein [Haemophilus parasuis 29755]
gi|167852224|gb|EDS23545.1| 16S rRNA-processing protein [Haemophilus parasuis 29755]
Length = 175
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S P + Y + +++ + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEYPESIFDYQPWFLKIKGQWQQVELESWRYHNNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ +A L + ++ F ELEE +++ DL + + +G G V +
Sbjct: 68 KGTEDRETAQLLTNAEIGVDLAVFP--ELEEGDYYWHDLIGCQVLNLEGYAMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKAGSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|113971172|ref|YP_734965.1| 16S rRNA-processing protein RimM [Shewanella sp. MR-4]
gi|114048410|ref|YP_738960.1| 16S rRNA-processing protein RimM [Shewanella sp. MR-7]
gi|123029444|sp|Q0HGA9|RIMM_SHESM RecName: Full=Ribosome maturation factor rimM
gi|123131181|sp|Q0HSK2|RIMM_SHESR RecName: Full=Ribosome maturation factor rimM
gi|113885856|gb|ABI39908.1| 16S rRNA processing protein RimM [Shewanella sp. MR-4]
gi|113889852|gb|ABI43903.1| 16S rRNA processing protein RimM [Shewanella sp. MR-7]
Length = 176
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G+ HG+ G + I +Y ++ + Y + + + RE+++++ +
Sbjct: 1 MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ + L EDEF+ DL E + G
Sbjct: 61 GKAVVAELEGVTTRERAQMLTNCEIGILPEQMNA--LPEDEFYWRDLIGCEVINTNGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFTK-FAVLEVNLQENKILID 163
G V + G+ +L +K + ++PF +L+V++Q +IL+D
Sbjct: 119 GVVDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKVDIQGKQILVD 171
>gi|209573745|sp|Q1GYT7|RIMM_METFK RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELR------IL 51
M + +LV+M I +G+ G V + ++ D R++L D ++ +
Sbjct: 1 MQIVSELVIMGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVE 60
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
K N + GID+ A + + + R + E EE E++ +DL ++ ++
Sbjct: 61 KAKVHNDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELP--EPEEGEYYWSDLIGLQVRNQ 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
Q +GQV V+ GA +L +K ++ L+PF VLEV+ +L+D
Sbjct: 119 QEVDFGQVVDVFATGANDVLVVK--GDRERLVPFIGQVVLEVDTDGKTMLVD 168
>gi|251797469|ref|YP_003012200.1| 16S rRNA processing protein RimM [Paenibacillus sp. JDR-2]
gi|247545095|gb|ACT02114.1| 16S rRNA processing protein RimM [Paenibacillus sp. JDR-2]
Length = 172
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 9/172 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYRKN 57
+K + + THGL GEV + + + E+ +
Sbjct: 3 NKYYNVGKLVNTHGLRGEVKVLPQTDFAESRFASGSKLSLQHPDNGQKLEVEVTGAREHK 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
FI G ++I+ + + L ++ E+L++ E++ ++ G+ G
Sbjct: 63 GMFILKLKGYNDINEVEKYKGWTLKIGEEEL--EQLDDGEYYYHEIIGCRVLTEDGEELG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + + +K L+P +L V++ + + + +
Sbjct: 121 TISDILRPGANDVWVVDMPKKKQLLLPVIDDVLLNVDVTNKTVTVRLLEGLI 172
>gi|77457247|ref|YP_346752.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens Pf0-1]
gi|109893035|sp|Q3KHJ3|RIMM_PSEPF RecName: Full=Ribosome maturation factor rimM
gi|77381250|gb|ABA72763.1| 16S rRNA processing protein [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN--RELRILKMYRKNK 58
K D L+++ I + HG+ GEV + S+ + +L Y + +++ ++ K
Sbjct: 7 KADDLIVVGKIFSVHGVRGEVKVFSFTDPIENLLGYRNWTLRREGVVKQVELVSGRSTQK 66
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+D+ A L ++ R D L DE++ LE + ++ + +G+
Sbjct: 67 DLVVKLKGLDDRDEARLLSGYEICIPRSLLPD--LTADEYYWYQLEGLSVINQDEQLFGK 124
Query: 119 VCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L +K ++ L+P+T+ VL ++L+ + ++
Sbjct: 125 VDHLLETGANDVLVVKPCVGSLDDRERLLPYTEQCVLAIDLEAGVMRVE 173
>gi|237800085|ref|ZP_04588546.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022940|gb|EGI02997.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 179
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L + R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKGLDDREEARLLSGYDICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|46908025|ref|YP_014414.1| 16S rRNA-processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47094472|ref|ZP_00232150.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293596406|ref|ZP_05231381.2| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
gi|293597068|ref|ZP_05267001.2| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|59798758|sp|Q71YM3|RIMM_LISMF RecName: Full=Ribosome maturation factor rimM
gi|46881295|gb|AAT04591.1| 16S rRNA processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47017155|gb|EAL08010.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293585205|gb|EFF97237.1| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|293595620|gb|EFG03381.1| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
Length = 169
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K D LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K + +K LIP+ V E+N+ + KI I+ + L+
Sbjct: 119 TEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD 169
>gi|238852594|ref|ZP_04643004.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
gi|238834740|gb|EEQ26967.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
Length = 173
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKR 59
+ + + I + HGL GEV +++ + P + +R + ++D + I+ R++K+
Sbjct: 1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQ 60
Query: 60 F-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
F + F ID+I A ++ +LY D +EL E ++ D+ +D + G+ G
Sbjct: 61 FYLVKFEEIDDIDQAEKVCGKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EIK K+F IP + V +V+L +I + + +
Sbjct: 119 VLANIETPGANDIWEIKPERGKSFWIPNIESVVNKVDLANKRIEVTLLEGLRDEN 173
>gi|325685918|gb|EGD27983.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 167
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFIA 62
+ I THGL GEV + + P D R + +D+RE+ + + ++
Sbjct: 2 NYYNVGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
TF+ I +I A +L+ ++ +D EL + ++ +L + D + G+ G++
Sbjct: 62 TFAEITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA I E+ + K+F +P+ V V++ + ++ ++ +
Sbjct: 120 IEAPGANDIWEVTDENGKSFWLPYIPQVVKSVDIDKKEVRVELMEGL 166
>gi|307132201|ref|YP_003884217.1| 16S rRNA processing protein [Dickeya dadantii 3937]
gi|306529730|gb|ADM99660.1| 16S rRNA processing protein [Dickeya dadantii 3937]
Length = 182
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ + +G+T+G+ G + + S + + Y + + + I N+ +
Sbjct: 12 NPITLGKMGSTYGIKGWLRVFSSTEDAESIFDYQPWFIRNKGLWQPIEIESWRHHNQDLV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID+ +A+ L + ++ EL+E +++ DL + G G+V
Sbjct: 72 IKIKDIDDRDAANLLTNCEIVVDSAQLP--ELDEGDYYWKDLIGCDVVTIGGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ +L ++ ++ K LIPF T+ + V+L ++I +D
Sbjct: 130 MMETGSNDVLVVRANLKDAYGVKERLIPFLTEQVIKHVDLSTHRIDVDWDPG 181
>gi|206577100|ref|YP_002237053.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae 342]
gi|288934016|ref|YP_003438075.1| 16S rRNA processing protein RimM [Klebsiella variicola At-22]
gi|290510924|ref|ZP_06550293.1| 16S rRNA processing protein RimM [Klebsiella sp. 1_1_55]
gi|238058952|sp|B5XVK4|RIMM_KLEP3 RecName: Full=Ribosome maturation factor rimM
gi|206566158|gb|ACI07934.1| 16S rRNA processing protein RimM [Klebsiella pneumoniae 342]
gi|288888745|gb|ADC57063.1| 16S rRNA processing protein RimM [Klebsiella variicola At-22]
gi|289775917|gb|EFD83916.1| 16S rRNA processing protein RimM [Klebsiella sp. 1_1_55]
Length = 182
Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+++G+ G + + S + + Y + + + + + N+ I
Sbjct: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQKAGQWQVVELEGWRHHNQDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ ELEE +++ DL + +G G+V
Sbjct: 72 IKLKGVDDRDAANLLTNCEIIVDSSQLP--ELEEGDYYWKDLMGCQVVTTEGYSLGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 181
>gi|291542203|emb|CBL15313.1| 16S rRNA processing protein RimM [Ruminococcus bromii L2-63]
Length = 171
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFSGID 68
I THG+ GEV ID + ++P L + + + E +K +A G+D
Sbjct: 9 GKIVGTHGIKGEVRIDPWCDSPEFLCAFKKLWLDENGTEFIEVKSRPHKNIALAKIKGVD 68
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCGVYNFGA 127
I +A + R +Y R D L E F DL +E D G+ +G++ V GA
Sbjct: 69 TIEAAEKYRGKVVYINRDD---INLAEGVHFVQDLIGLEVKDAGNGRVYGKISDVLRTGA 125
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ EIK+ KT+L P V E+N+ + +LI P+ ++
Sbjct: 126 NDVYEIKDADGKTYLAPVIDDVVKEINVNDGYVLIVPMKGIFDDE 170
>gi|117921455|ref|YP_870647.1| 16S rRNA-processing protein RimM [Shewanella sp. ANA-3]
gi|171460761|sp|A0KZM2|RIMM_SHESA RecName: Full=Ribosome maturation factor rimM
gi|117613787|gb|ABK49241.1| 16S rRNA processing protein RimM [Shewanella sp. ANA-3]
Length = 176
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G+ HG+ G + I +Y ++ + Y + + + RE+++++ +
Sbjct: 1 MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ + D L EDEF+ DL E + G
Sbjct: 61 GKAVVAELEGVTTRERAQMLTNCEIGILPEQMND--LPEDEFYWRDLIGCEVINTNGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFTK-FAVLEVNLQENKILID 163
G V + G+ +L +K + ++PF +L+V++Q +IL+D
Sbjct: 119 GVVDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKVDVQGKQILVD 171
>gi|333024168|ref|ZP_08452232.1| putative 16S rRNA-processing protein RimM [Streptomyces sp. Tu6071]
gi|332744020|gb|EGJ74461.1| putative 16S rRNA-processing protein RimM [Streptomyces sp. Tu6071]
Length = 236
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 6/188 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + +A LR+ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTAAEALRNTLLIAEIDPEEVPEDPE-EFYDYQLMDLDVVTEDGQEVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
+ + + ++ +IPF + V E++L E + +I+P L+ + + +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLDEQRAVINPPRGLLDLDEADVASERETS 181
Query: 183 LDSAGKKS 190
G
Sbjct: 182 RTETGAAP 189
>gi|167648844|ref|YP_001686507.1| 16S rRNA-processing protein RimM [Caulobacter sp. K31]
gi|167351274|gb|ABZ74009.1| 16S rRNA processing protein RimM [Caulobacter sp. K31]
Length = 200
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 6/185 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKR 59
L+L+ + G+ GE+ I +Y +P+ L R+ + + + L +
Sbjct: 12 SSPQNLILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSPALTVQTARVVKDG 71
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+A +G+D +A LR L+LY R E +EDE++ DL + + G+
Sbjct: 72 VVARCAGVDTKEAADALRGLRLYVPRAALP--EPDEDEYYLADLIGLPVRHVATDELLGK 129
Query: 119 VCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+ V NFGA +LEI +T+ +PFT+ AV EV + + +L DP A ++P
Sbjct: 130 IKSVQNFGADDLLEIDPALGGQTWYLPFTRAAVPEVKIADGVVLADPPALVGEPEGPESP 189
Query: 178 QYDCP 182
D
Sbjct: 190 AEDDD 194
>gi|295696072|ref|YP_003589310.1| 16S rRNA processing protein RimM [Bacillus tusciae DSM 2912]
gi|295411674|gb|ADG06166.1| 16S rRNA processing protein RimM [Bacillus tusciae DSM 2912]
Length = 175
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 8/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR----ELRILKMY 54
M + + + + THGL GEV I + P R VL+ + ELR+ K
Sbjct: 1 MAPEEPMYTVGVVVGTHGLRGEVRIFPRTDFPEVRFRQGSVLWLDGGTGPAMELRVEKAR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ FI F+G +I + + +L L E ++ L D G+
Sbjct: 61 KHKNVFIVQFAGFHSIQAVEPWKGRELKVPESAL--MPLPEGRYYIHQLVGCRVVDEHGR 118
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ G++ V GA + ++ K L+P V V++++ +++
Sbjct: 119 WLGELSEVLQPGANDVYVVRRPGAKDLLVPAIPSVVKRVSVEDRLMVVSLPEGL 172
>gi|307634723|gb|ADI83484.2| 16S rRNA processing protein RimM [Geobacter sulfurreducens KN400]
Length = 172
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNR--ELRILKMYRK 56
++ D L L+ I TTHG+ G++ + S++ + + L VL D R + +
Sbjct: 1 MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ R + + + NI+ L +LYA R F LEE E++ DL ++ G
Sbjct: 61 HDRVLLSLTPFTNINEVLHLIGCELYAHRDQFP--PLEEGEYYWCDLIGLQVVTAAGTVI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + + + ++ + +LIP + V++V+L+ + + P L+
Sbjct: 119 GRLDSILPTESHDVYVVRGAD-REYLIPAVEDVVVQVDLEAGTMTVSPPEGLLD 171
>gi|319786604|ref|YP_004146079.1| 16S rRNA processing protein RimM [Pseudoxanthomonas suwonensis
11-1]
gi|317465116|gb|ADV26848.1| 16S rRNA processing protein RimM [Pseudoxanthomonas suwonensis
11-1]
Length = 190
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNK 58
K++L+ + G+ G+V ++S+ + RY + + RELR K K
Sbjct: 24 PQKMILLGRVTGAFGVRGDVKVESWTEPRAQIFRYQPWILRAPNGAERELRGAKGRDTGK 83
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+AT G D+ +A LR +++ R E++ DLE ++ +G G+
Sbjct: 84 HVVATLPGCDDRDAAEALRGTEIWVPRDVLPPP--APGEYYWVDLEGLKVVTVEGVALGE 141
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
V + + GA +L ++ E+ +IPF V V+ I +D
Sbjct: 142 VSHLLSTGANDVLVVR--GERERMIPFVQPDYVTSVDFDTATITVD 185
>gi|295397869|ref|ZP_06807932.1| 16S rRNA processing protein RimM [Aerococcus viridans ATCC 11563]
gi|294973914|gb|EFG49678.1| 16S rRNA processing protein RimM [Aerococcus viridans ATCC 11563]
Length = 191
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN--RELRILKMYRKNK 58
++ L+ I T L GEV + + + P + R +++ D + +
Sbjct: 10 EQYYLVGKIVNTQALRGEVRVMATTDFPEERFRIGATLAIFNGDKLVETVEVDGHRLHKN 69
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F G DNI+ + + L + + +EL+E+EF+ D+ +E + Y G+
Sbjct: 70 FNLLHFKGKDNINDVEKFKGFDLKVAGTEREADELDENEFYYDDIIGLEVYTTDETYLGK 129
Query: 119 VCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
V + + + + I+ K LIP+ + VLE++L +N+++IDP+ +++ +
Sbjct: 130 VREITSLPSNDVWAIQRPNKGKDILIPYIEDIVLEIDLDDNRVVIDPMDGLIDDVDAE 187
>gi|19553253|ref|NP_601255.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|62390889|ref|YP_226291.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|24418639|sp|Q8NNX5|RIMM_CORGL RecName: Full=Ribosome maturation factor rimM
gi|21324822|dbj|BAB99445.1| RimM protein, required for 16S rRNA processing [Corynebacterium
glutamicum ATCC 13032]
gi|41326228|emb|CAF20390.1| RIMM PROTEIN (16S RRNA PROCESSING PROTEIN) [Corynebacterium
glutamicum ATCC 13032]
Length = 171
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE--LRILKMYRK 56
+ ++ + + + +HG+ GEV ++ ++P + + +E L I
Sbjct: 1 MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + F+ + + +A LR + +A + +E +ED F++ +LE + +G+
Sbjct: 61 QGRLLVKFAEVPDRTAADSLRGTRFFAAPLE---DEDDEDGFYDHELEGLRVI-HEGEDI 116
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V GV + AG ILE++ T K LIPF V EV+L+E I P L+
Sbjct: 117 GEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLD 170
>gi|289578451|ref|YP_003477078.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|297544727|ref|YP_003677029.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528164|gb|ADD02516.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|296842502|gb|ADH61018.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 167
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSND---NRELRILKMYRKNK 58
+ + + + HG+ GEV + N P YV +D R+ I + +K
Sbjct: 1 MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYELEYVWVFDDQQRPRKYDIEYVKIISK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R GIDN A +L+ L Q+ +LE+DE+F DL M+ + +G + G
Sbjct: 61 RVCVKLKGIDNRDEAEKLKGAFLKVDSQN--ALKLEKDEYFIKDLIGMKVYTEEGDFVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ V GA + IK E+ LIP K V +V++ +++ +
Sbjct: 119 LVEVLQTGANDVYVIKG-EEREILIPAIKEVVKKVDVDNKVMVVHLLEGL 167
>gi|300811726|ref|ZP_07092200.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497302|gb|EFK32350.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 167
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFIA 62
+ I THGL GEV + + P D R + +D+RE+ + + ++
Sbjct: 2 NYYNVGKIIATHGLKGEVKVALTTDFPEDRFRTGSRLYLGDDSREVTVAAGRPFKQFWLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
TF+ I +I A +L+ ++ +D EL + ++ DL + D + G+ G++
Sbjct: 62 TFAEITDIDQAKKLKGTEILISEED--QGELPDGVYYYRDLLGCKVLDDESGEEIGELTD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA I E+ + K+F +P+ V V++ + ++ ++ +
Sbjct: 120 IEAPGANDIWEVTDEDGKSFWLPYIPQVVKSVDIDKKEVRVELMEGL 166
>gi|90109245|pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna
Processing Protein Rimm (Pa3744) From Pseudomonas
Aeruginosa At 2.46 A Resolution
Length = 187
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D LV++ I + +G+ GEV + S+ + N +D R+ L + R+ +++ K
Sbjct: 18 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVL 77
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A G+D+ A ++ R + LEE E++ LE ++ D+ + G +
Sbjct: 78 AAKLKGLDDREEARTFTGYEICIPRSELPS--LEEGEYYWHQLEGLKVIDQGRQLLGVID 135
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA + +K + L+P+T VL ++L + +D
Sbjct: 136 HLLETGANDVXVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEXRVD 182
>gi|327479754|gb|AEA83064.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri DSM 4166]
Length = 175
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
D+LV++ I + HG+ G+V + S+ + N +D R+ L D +++ ++K +
Sbjct: 6 DELVVIGKIVSVHGVRGDVKVYSFTDPIDNLLDYRRWTLRRGDEVKQVELVKGRLQGNIL 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A+ G+ + A D ++ R + L++ E++ L+ ++ ++ G+ GQV
Sbjct: 66 VASLKGLTDREVARTYADFEICVPRSELPA--LDDGEYYWYQLQGLKVLNQAGQLLGQVD 123
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K + L+P+T VL+V+L ++ +D
Sbjct: 124 HLLETGANDVLVVKPCAGSLDDRERLLPYTDHCVLKVDLDSGEMQVD 170
>gi|156932850|ref|YP_001436766.1| 16S rRNA-processing protein RimM [Cronobacter sakazakii ATCC
BAA-894]
gi|166226439|sp|A7MEG3|RIMM_ENTS8 RecName: Full=Ribosome maturation factor rimM
gi|156531104|gb|ABU75930.1| hypothetical protein ESA_00647 [Cronobacter sakazakii ATCC BAA-894]
Length = 183
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 34/183 (18%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 1 MVKLD------KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRI 50
M K D +++ +G+++G+ G + + S + + Y + + +++++
Sbjct: 2 MSKQDAAKAPVNPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGQWQQVQL 61
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
N+ I G+D+ +A+ L + ++ D LEE +++ DL +
Sbjct: 62 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPD--LEEGDYYWKDLIGCQVVT 119
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDP 164
+G G+V + G+ +L +K ++ K L+PF + +V+L I +D
Sbjct: 120 TEGYSLGKVIDMMETGSNDVLVVKANLKDAFGIKERLLPFLDGQVIKKVDLATQTIEVDW 179
Query: 165 IAA 167
Sbjct: 180 DPG 182
>gi|114564083|ref|YP_751597.1| 16S rRNA-processing protein [Shewanella frigidimarina NCIMB 400]
gi|122299044|sp|Q07Z06|RIMM_SHEFN RecName: Full=Ribosome maturation factor rimM
gi|114335376|gb|ABI72758.1| 16S rRNA processing protein RimM [Shewanella frigidimarina NCIMB
400]
Length = 176
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M +LV++ +G++HG+ G + I SY ++ + Y + RE+++ + +
Sbjct: 1 MSSNQELVVLGKLGSSHGIKGWLKITSYTDSVEGIFDYSPWLIKEQGVWREVKVAQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ + KD L++ EF++ DL E + G
Sbjct: 61 GKAVVAELEGVATREHAQMLTNCEIAIMPEQMKD--LDDSEFYHRDLIGCEVTNINGYNM 118
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L IK + +IPF + + +V+LQ +IL+D
Sbjct: 119 GIVDQIVETGSNDVLLIKANAKDAFGKAERMIPFVPEQFIKQVDLQGKQILVD 171
>gi|294788701|ref|ZP_06753942.1| 16S rRNA processing protein RimM [Simonsiella muelleri ATCC 29453]
gi|294483183|gb|EFG30869.1| 16S rRNA processing protein RimM [Simonsiella muelleri ATCC 29453]
Length = 169
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 7/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSN-DNRELRILKMYRK 56
M + V M I G+ G V + Y ++ +D +++ L D +L +
Sbjct: 1 MNNMQNWVAMGYIKGAFGVKGWVKVQPSTEYTDSLLDYSQWRLVQGNDVMMATLLNGHVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F I + SA+ LR +Y R+ F E +E+EF+ TDL M+ +R
Sbjct: 61 NGELHVKFEQIQDRDSAALLRGYTIYIPREQFA--EPDENEFYWTDLMGMQVHNRDNACL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L +K LIPF + +VN I +D
Sbjct: 119 GEVINIMETGAHDVLVVKGEFG-EKLIPFVSQFIDDVNELTQTITVD 164
>gi|94309694|ref|YP_582904.1| 16S rRNA-processing protein RimM [Cupriavidus metallidurans CH34]
gi|209573590|sp|Q1LQE1|RIMM_RALME RecName: Full=Ribosome maturation factor rimM
gi|93353546|gb|ABF07635.1| 16S rRNA processing protein [Cupriavidus metallidurans CH34]
Length = 220
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLY-------------SNDNRE 47
D LV + +G +G+ G + + +A++ L R+ L S +
Sbjct: 38 PDDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRAPPAGVVSAPAQSAEAVS 97
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
++I + + +A +G+ + A L+ +++ +R DF E E EF+ DL
Sbjct: 98 IKISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAE--EGEFYWVDLIGCA 155
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEI--KNTMEK--TFLIPFTKFAVLEVNLQENKILID 163
+ QG+ G+V G+ + GA IL++ + K LIPF + V+ +I++D
Sbjct: 156 VVNEQGEALGEVTGLIDNGAHQILQVAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVD 215
Query: 164 PIAAGLN 170
GL+
Sbjct: 216 ---WGLD 219
>gi|260913368|ref|ZP_05919849.1| 16S rRNA processing protein RimM [Pasteurella dagmatis ATCC 43325]
gi|260632599|gb|EEX50769.1| 16S rRNA processing protein RimM [Pasteurella dagmatis ATCC 43325]
Length = 177
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 13/178 (7%)
Query: 1 MVKLDKLV-LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYR 55
M + + ++ +G+T+G+ G + I S + Y + + +
Sbjct: 1 MNMESQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRY 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N I G+D+ +A L ++++ F ELEE +++ DL + +G
Sbjct: 61 HNNDLIVKLKGVDDREAAQTLANIEIGVDLAVFP--ELEEGDYYWHDLIGCNVVNLEGYS 118
Query: 116 WGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L ++ ++ LIPF + V V+L I++D A
Sbjct: 119 MGSVTEMMETGSNDVLVVRANAKDAFGKQERLIPFLYEQVVKRVDLNTKTIIVDWDAG 176
>gi|85712461|ref|ZP_01043510.1| RimM [Idiomarina baltica OS145]
gi|85693739|gb|EAQ31688.1| RimM [Idiomarina baltica OS145]
Length = 181
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 1 MVK-LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--------IL 51
M K +++ IG +G+ G + I S+ NP D+ Y ++ R ++
Sbjct: 1 MTKQTSDALVVGHIGAVYGVKGWLKIQSFTENPEDIFDYTPWTLQGNAARQTTEEVINVV 60
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ R N IA GI++ A+ L + + EL +DEF+ DL + ++
Sbjct: 61 QWRRHNNGLIAQLEGINDRELAATKTGLSICINAEKLP--ELADDEFYWRDLIGLRVVNK 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTK-FAVLEVNLQENKILIDPI 165
QG G V + A +L + + LIPF + VL+V+ ++ +I +D
Sbjct: 119 QGYDMGVVEQIMPTAANDVLVVTANSNDAFGKSERLIPFVQSQYVLDVDNEKQQIQVDWP 178
Query: 166 A 166
A
Sbjct: 179 A 179
>gi|302670921|ref|YP_003830881.1| 16S rRNA processing protein RimM [Butyrivibrio proteoclasticus
B316]
gi|302395394|gb|ADL34299.1| 16S rRNA processing protein RimM [Butyrivibrio proteoclasticus
B316]
Length = 170
Score = 168 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 8/172 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELR--ILKMYRKNK 58
+ + I +THGL GEV + +P L + L++ E+ + K
Sbjct: 1 MTDRFQVGVIASTHGLQGEVNVFPTTEDPNRFKKLKKVTLHTQRGEEIELDVQSARFFKK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F +NI+ + R +L +R+D +LE E++ DL ++ D G G
Sbjct: 61 FVIVKFKQYNNINDVEKFRGCELTIERKD--AIKLEPGEYYCADLMGLDIVDEDGNKLGV 118
Query: 119 VCGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + E+ + ++ IP K V +++ KI I + L
Sbjct: 119 VTDIIQTGANDVYEMAREGSDEKVYIPVIKDCVRNIDVNGGKITIHVLEGLL 170
>gi|22298609|ref|NP_681856.1| 16S rRNA-processing protein [Thermosynechococcus elongatus BP-1]
gi|32129963|sp|Q8DK05|RIMM_THEEB RecName: Full=Ribosome maturation factor rimM
gi|22294789|dbj|BAC08618.1| tlr1065 [Thermosynechococcus elongatus BP-1]
Length = 183
Score = 168 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMY--- 54
++ + + + I HGL GEV + +++ P R++ + + +
Sbjct: 6 PEVSEWLCIGQIVGAHGLRGEVKVKPFSDFPERFTVPGCRWLRSPRQPQPYAVTLLRGRF 65
Query: 55 -RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ ++F+ TF+ I + +A L+ ++ D L +E+ DL + + QG
Sbjct: 66 LPRAEQFVVTFAEISDRTAAEALKGAEILVPASDRP--PLAANEYHLMDLIGLAVY-HQG 122
Query: 114 KYWGQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ G+V G+ N G +LE++ ++ IPF V V+L +I IDP
Sbjct: 123 ERVGEVVGLVNAG-NDLLEVQLLDPAPKAPQSVYIPFVPAIVPVVDLAARRIEIDPPLGL 181
Query: 169 L 169
L
Sbjct: 182 L 182
>gi|199597123|ref|ZP_03210555.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229552443|ref|ZP_04441168.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|199591927|gb|EDZ00002.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229314180|gb|EEN80153.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|259649942|dbj|BAI42104.1| 16S rRNA processing protein [Lactobacillus rhamnosus GG]
Length = 198
Score = 168 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 6/174 (3%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNK 58
K+ + TI THG+ GEV + + P N+ + + L I + +
Sbjct: 26 KMPDYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKG 85
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ TF +I+ + KL K LEE ++ D+ + D G+ G+
Sbjct: 86 LTMLTFKDYTDINQVLPFKGKKLQVTEAALK--PLEEGSYYYKDIIGLTVIDEHGQTLGK 143
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + + G + I + L+PF K V ++L++ + + +++
Sbjct: 144 VSEILSPGPNDVWVIPRPGKSELLLPFLKSVVQTIDLEQKEAHVIVPEGLIDDA 197
>gi|257884158|ref|ZP_05663811.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,501]
gi|257819996|gb|EEV47144.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,501]
Length = 173
Score = 168 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPVELTVKSHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ + RD L + + +L E+EF+ ++ + G G
Sbjct: 61 NFDLLSFEGHPSINDVEKYRDGILKVSKDN--SVDLAENEFYYHEIIGLRVL-EDGTELG 117
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ + L+P+ V EV+L+ + ++ +++
Sbjct: 118 KVKEILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVEIPEGLIDDE 172
>gi|237748992|ref|ZP_04579472.1| ribosome maturation factor rimM [Oxalobacter formigenes OXCC13]
gi|229380354|gb|EEO30445.1| ribosome maturation factor rimM [Oxalobacter formigenes OXCC13]
Length = 180
Score = 168 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRF 60
L+ + I +G+ G I Y+ + R + L D +++++ R+
Sbjct: 11 PSDLIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLDLPDMHNVKVMQARRQGDEI 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A FSGIDN +A LR + R F EL EDE++ DL + F+ +G G V
Sbjct: 71 VAHFSGIDNREAAEALRGSVICISRSRFP--ELPEDEYYWVDLIGLSVFNLRGDALGTVR 128
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
G+ + GA +L++ + LIPF + +V+ + KI +D
Sbjct: 129 GLIDNGAHPVLQVAVEDSENKVRELLIPFVDQFIDDVDREGGKITVD 175
>gi|123441195|ref|YP_001005182.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160292|ref|YP_004296869.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|166226488|sp|A1JK24|RIMM_YERE8 RecName: Full=Ribosome maturation factor rimM
gi|122088156|emb|CAL10944.1| 16S rRNA processing protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604477|emb|CBY25975.1| 16S rRNA processing protein RimM [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664522|gb|ADZ41166.1| 16S rRNA-processing protein RimM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862668|emb|CBX72816.1| ribosome maturation factor rimM [Yersinia enterocolitica W22703]
Length = 182
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ +++ +G+T+G+ G + + S N + Y + + + + R ++
Sbjct: 10 PEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + ELEED+++ DL + G G++
Sbjct: 70 LIIKVKGVDDRDAANLLTNCEIVVDSKQLP--ELEEDDYYWKDLMGCQVVTTAGYELGKI 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 128 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 181
>gi|261820440|ref|YP_003258546.1| 16S rRNA-processing protein RimM [Pectobacterium wasabiae WPP163]
gi|261604453|gb|ACX86939.1| 16S rRNA processing protein RimM [Pectobacterium wasabiae WPP163]
Length = 182
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
++M IG+ +G+ G + + S + + Y + + + + I N+ I
Sbjct: 12 NPIVMGKIGSAYGIRGWLRVFSSTEDADSIFDYQPWFIQSKSGWQLVEIEGWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+ +A+ L + ++ D L E +++ DL + G G++
Sbjct: 72 IKVKGADDRDAANLLTNCEIVVDSSQLPD--LGEGDYYWKDLIGCQVVTVTGYELGKIID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF T+ V V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSAQTIEVDWDPG 181
>gi|108798935|ref|YP_639132.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MCS]
gi|119868050|ref|YP_938002.1| 16S rRNA-processing protein [Mycobacterium sp. KMS]
gi|126434535|ref|YP_001070226.1| 16S rRNA-processing protein RimM [Mycobacterium sp. JLS]
gi|123178993|sp|Q1BAK8|RIMM_MYCSS RecName: Full=Ribosome maturation factor rimM
gi|166226454|sp|A3PXV8|RIMM_MYCSJ RecName: Full=Ribosome maturation factor rimM
gi|166226455|sp|A1UEF4|RIMM_MYCSK RecName: Full=Ribosome maturation factor rimM
gi|108769354|gb|ABG08076.1| 16S rRNA processing protein RimM [Mycobacterium sp. MCS]
gi|119694139|gb|ABL91212.1| 16S rRNA processing protein RimM [Mycobacterium sp. KMS]
gi|126234335|gb|ABN97735.1| 16S rRNA processing protein RimM [Mycobacterium sp. JLS]
Length = 173
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKNKRF 60
+++ + HG+ GE+ ++ ++P L R + + R
Sbjct: 3 LVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPRGGAERAFVVESVRPHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A LR D E E DE+++ LE + G G V
Sbjct: 63 LLRLDGVADRTAADALRGTVFLVDSADLPPIE-EPDEYYDHQLEGLLVRTVDGVDVGTVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L +K L+PF V V+L + + IDP L+
Sbjct: 122 EVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLD 171
>gi|209573746|sp|B0T563|RIMM_CAUSK RecName: Full=Ribosome maturation factor rimM
Length = 192
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 6/185 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKR 59
L+L+ + G+ GE+ I +Y +P+ L R+ + + + L +
Sbjct: 4 SSPQNLILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSPALTVQTARVVKDG 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+A +G+D +A LR L+LY R E +EDE++ DL + + G+
Sbjct: 64 VVARCAGVDTKEAADALRGLRLYVPRAALP--EPDEDEYYLADLIGLPVRHVATDELLGK 121
Query: 119 VCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+ V NFGA +LEI +T+ +PFT+ AV EV + + +L DP A ++P
Sbjct: 122 IKSVQNFGADDLLEIDPALGGQTWYLPFTRAAVPEVKIADGVVLADPPALVGEPEGPESP 181
Query: 178 QYDCP 182
D
Sbjct: 182 AEDDD 186
>gi|313124063|ref|YP_004034322.1| ribosome maturation factor rimm [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280626|gb|ADQ61345.1| Ribosome maturation factor rimM [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 167
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFIA 62
+ I THGL GEV + + P D R + +D+RE+ + + ++
Sbjct: 2 NYYNVGKIIATHGLKGEVKVALTTDFPEDRFRAGSRLYLGDDSREVTVAAGRPFKQFWLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
TF+ I +I A +L+ ++ +D EL + ++ +L + D + G+ G++
Sbjct: 62 TFTEITDIDQAEKLKGTEILISEED--QGELPDGVYYYRELLGCKVLDDESGEEIGELTD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA I E+ + K+F +P+ V V++ + ++ ++ +
Sbjct: 120 IEAPGANDIWEVTDENGKSFWLPYIPQVVKSVDIDKKEVRVELMEGL 166
>gi|148380404|ref|YP_001254945.1| 16S rRNA processing protein RimM [Clostridium botulinum A str. ATCC
3502]
gi|168180673|ref|ZP_02615337.1| 16S rRNA processing protein RimM [Clostridium botulinum NCTC 2916]
gi|226949799|ref|YP_002804890.1| 16S rRNA processing protein RimM [Clostridium botulinum A2 str.
Kyoto]
gi|209573571|sp|A5I4M4|RIMM_CLOBH RecName: Full=Ribosome maturation factor rimM
gi|148289888|emb|CAL83996.1| putative 16S rRNA processing protein RimM [Clostridium botulinum A
str. ATCC 3502]
gi|182668387|gb|EDT80366.1| 16S rRNA processing protein RimM [Clostridium botulinum NCTC 2916]
gi|226843072|gb|ACO85738.1| 16S rRNA processing protein RimM [Clostridium botulinum A2 str.
Kyoto]
Length = 164
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D E +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEERKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D G+ GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVKGKS--EVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|134102488|ref|YP_001108149.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|291004121|ref|ZP_06562094.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|166226476|sp|A4FME9|RIMM_SACEN RecName: Full=Ribosome maturation factor rimM
gi|133915111|emb|CAM05224.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
Length = 180
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR------ELRILKMYRKNKRF 60
+ + I HG+ GE+ ++ ++P + R + R
Sbjct: 9 LAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRRGAHASENFTVAAARPHAGRL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G++ +A ELR L + + + + DEF + LE + G+ G V
Sbjct: 69 LVRAEGVEGREAAEELRGALLTVTADELESTD-DPDEFHDHQLEGLRVVFPAGEEAGVVA 127
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V + AG +L ++ ++ L+PF V E++L+ +I++DP +
Sbjct: 128 EVVHTPAGELLAVRTPDDREVLVPFVSEMVPEIDLEAGRIVVDPPEGLFDAEE 180
>gi|108808841|ref|YP_652757.1| 16S rRNA-processing protein RimM [Yersinia pestis Antiqua]
gi|108810969|ref|YP_646736.1| 16S rRNA-processing protein RimM [Yersinia pestis Nepal516]
gi|153997660|ref|ZP_02022760.1| 16S rRNA processing protein [Yersinia pestis CA88-4125]
gi|161484858|ref|NP_668228.2| 16S rRNA-processing protein RimM [Yersinia pestis KIM 10]
gi|161511454|ref|NP_991788.2| 16S rRNA-processing protein RimM [Yersinia pestis biovar Microtus
str. 91001]
gi|162421041|ref|YP_001605453.1| 16S rRNA-processing protein RimM [Yersinia pestis Angola]
gi|165925672|ref|ZP_02221504.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936610|ref|ZP_02225177.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009999|ref|ZP_02230897.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213093|ref|ZP_02239128.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399078|ref|ZP_02304602.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421657|ref|ZP_02313410.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423837|ref|ZP_02315590.1| 16S rRNA processing protein RimM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025578|ref|YP_001722083.1| 16S rRNA-processing protein RimM [Yersinia pseudotuberculosis
YPIII]
gi|218930315|ref|YP_002348190.1| 16S rRNA-processing protein RimM [Yersinia pestis CO92]
gi|229838912|ref|ZP_04459071.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229896395|ref|ZP_04511563.1| 16S rRNA processing protein [Yersinia pestis Pestoides A]
gi|229899478|ref|ZP_04514620.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229901184|ref|ZP_04516307.1| 16S rRNA processing protein [Yersinia pestis Nepal516]
gi|270489367|ref|ZP_06206441.1| 16S rRNA processing protein RimM [Yersinia pestis KIM D27]
gi|294505008|ref|YP_003569070.1| 16S rRNA-processing protein [Yersinia pestis Z176003]
gi|21362863|sp|Q8ZBU8|RIMM_YERPE RecName: Full=Ribosome maturation factor rimM
gi|122382874|sp|Q1C410|RIMM_YERPA RecName: Full=Ribosome maturation factor rimM
gi|122385120|sp|Q1CLJ4|RIMM_YERPN RecName: Full=Ribosome maturation factor rimM
gi|238687264|sp|A9R0U4|RIMM_YERPG RecName: Full=Ribosome maturation factor rimM
gi|238688419|sp|B1JJ90|RIMM_YERPY RecName: Full=Ribosome maturation factor rimM
gi|108774617|gb|ABG17136.1| 16S rRNA processing protein RimM [Yersinia pestis Nepal516]
gi|108780754|gb|ABG14812.1| 16S rRNA processing protein RimM [Yersinia pestis Antiqua]
gi|115348926|emb|CAL21885.1| 16S rRNA processing protein [Yersinia pestis CO92]
gi|149289297|gb|EDM39377.1| 16S rRNA processing protein [Yersinia pestis CA88-4125]
gi|162353856|gb|ABX87804.1| 16S rRNA processing protein RimM [Yersinia pestis Angola]
gi|165915259|gb|EDR33869.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922284|gb|EDR39461.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990906|gb|EDR43207.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205880|gb|EDR50360.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960576|gb|EDR56597.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051582|gb|EDR62990.1| 16S rRNA processing protein RimM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167058007|gb|EDR67753.1| 16S rRNA processing protein RimM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752112|gb|ACA69630.1| 16S rRNA processing protein RimM [Yersinia pseudotuberculosis
YPIII]
gi|229681909|gb|EEO78002.1| 16S rRNA processing protein [Yersinia pestis Nepal516]
gi|229687475|gb|EEO79549.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695278|gb|EEO85325.1| 16S rRNA processing protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700469|gb|EEO88500.1| 16S rRNA processing protein [Yersinia pestis Pestoides A]
gi|262366997|gb|ACY63554.1| 16S rRNA-processing protein [Yersinia pestis D182038]
gi|270337871|gb|EFA48648.1| 16S rRNA processing protein RimM [Yersinia pestis KIM D27]
gi|294355467|gb|ADE65808.1| 16S rRNA-processing protein [Yersinia pestis Z176003]
gi|320016487|gb|ADW00059.1| 16S rRNA processing protein [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 182
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 10 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 70 LIIKVKGVDDREAANLLTNCEIIVDSTQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 128 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 181
>gi|281412660|ref|YP_003346739.1| 16S rRNA processing protein RimM [Thermotoga naphthophila RKU-10]
gi|281373763|gb|ADA67325.1| 16S rRNA processing protein RimM [Thermotoga naphthophila RKU-10]
Length = 176
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
LD+ V + I THGL GEV Y N+ +L+ +LY+++ + L + + R N
Sbjct: 9 LDERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSDVILYNSEKKAFYNLTVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID I +A +++ +++ K ++ +L EDE++ ++ + + F G+ G
Sbjct: 69 KLFLIRFKSIDTIEAAEKIKGCEVFVKYEELP--KLNEDEYYFYEILDCDVFYESGENVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V + G+ +L ++ +K LIP TK ++E++ +I+ +
Sbjct: 127 KVVDIIETGSNDVLVVRKK-KKETLIPMTKDCIVEIDKGAKRIIAKEMEWI 176
>gi|227115234|ref|ZP_03828890.1| 16S rRNA-processing protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 182
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
++M IG+ +G+ G + + S + + Y + + + + I N+ I
Sbjct: 12 NPIVMGKIGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQSKSGWQLVEIEGWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+ +A+ L + ++ D L E +++ DL + G G++
Sbjct: 72 IKVKGADDRDAANLLTNCEIVVDSSQLPD--LGEGDYYWKDLIGCQVVTVTGYELGKIID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF T+ V V+L + +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSAQTVEVDWDPG 181
>gi|312878369|ref|ZP_07738279.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
lactoaceticus 6A]
gi|311794854|gb|EFR11273.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
lactoaceticus 6A]
Length = 169
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + YVL ++ + +L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I NI A +L++ + +R+ K +L ED +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISNIDEAQKLKNRYIVIERERAK--KLPEDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEEGYMKIKVVEGLLD 169
>gi|153930923|ref|YP_001384621.1| 16S rRNA-processing protein RimM [Clostridium botulinum A str. ATCC
19397]
gi|153935028|ref|YP_001388138.1| 16S rRNA-processing protein RimM [Clostridium botulinum A str.
Hall]
gi|166226434|sp|A7FW10|RIMM_CLOB1 RecName: Full=Ribosome maturation factor rimM
gi|152926967|gb|ABS32467.1| 16S rRNA processing protein RimM [Clostridium botulinum A str. ATCC
19397]
gi|152930942|gb|ABS36441.1| 16S rRNA processing protein RimM [Clostridium botulinum A str.
Hall]
Length = 164
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D E +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEEKKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D G+ GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVKGKS--EVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|312793160|ref|YP_004026083.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180300|gb|ADQ40470.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 169
Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + YVL ++ + +L I + K+
Sbjct: 1 MHKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ + +R+ K +L ED +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISSIDEAQKLKNRYIVIERERAK--KLPEDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEEGYMKIKVVEGLLD 169
>gi|254000094|ref|YP_003052157.1| 16S rRNA processing protein RimM [Methylovorus sp. SIP3-4]
gi|253986773|gb|ACT51630.1| 16S rRNA processing protein RimM [Methylovorus sp. SIP3-4]
Length = 164
Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKNKRFIA 62
+V+M + +G+ G + I ++ D + + L +E + K +
Sbjct: 1 MVVMGRVVAPYGIYGWLKIQPDTETIDSLFDYDNWWLGRDPKWQEYPVEAAKVHGKTLLV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+ +A + ++ R+ E EE E++ +DL + + Q +G V V
Sbjct: 61 KLVGIDDRDAAFAAKGKQVSVPREQLP--EAEEGEYYWSDLIGLRVSNLQQVDFGTVVDV 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ +K+ + L+PFT AV EVN++ +L+D
Sbjct: 119 FETGANDVVVVKDDAGRERLVPFTAEAVPEVNVEAGTMLVD 159
>gi|317057389|ref|YP_004105856.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
gi|315449658|gb|ADU23222.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
Length = 172
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIA 62
++KL+ I + GL GEV + + + P L + LY + + + + +
Sbjct: 1 MNKLLEAGKIVSVFGLKGEVKVQPWCDTPDFLCEFDTLYYKSGTPVEVERARVQKNIVVM 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
G+D++ A ++R+ LY R+D EL ED +F DL ++ D GK +G +
Sbjct: 61 KIKGVDSVEEAQKIRNRVLYLDRED---VELGEDTYFVQDLIGLKVIDLNSGKEYGVLTE 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
V GA + IK+ K + IP + E +++ + I P+ ++
Sbjct: 118 VSETGANDVYHIKSESGKMYYIPAIPSVIAETDVEGGVMKITPLEGLFDDAEE 170
>gi|239944618|ref|ZP_04696555.1| 16S rRNA-processing protein [Streptomyces roseosporus NRRL 15998]
gi|239991082|ref|ZP_04711746.1| 16S rRNA-processing protein [Streptomyces roseosporus NRRL 11379]
gi|291448082|ref|ZP_06587472.1| 16S rRNA processing protein [Streptomyces roseosporus NRRL 15998]
gi|291351029|gb|EFE77933.1| 16S rRNA processing protein [Streptomyces roseosporus NRRL 15998]
Length = 203
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 6/187 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + +A LR+ L A + E E+ EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRSAAEALRNTLLIADVDPDELPEEED-EFYDHQLIDLDVVLADGTEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT-MKNPQYDCP 182
+ + + ++ +IPF + V E++L+E + +I P ++ + + D
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVIAPPPGLIDESEAVIASSRDEE 181
Query: 183 LDSAGKK 189
A +
Sbjct: 182 TGDAASE 188
>gi|295836290|ref|ZP_06823223.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB74]
gi|197697345|gb|EDY44278.1| 16S rRNA processing protein RimM [Streptomyces sp. SPB74]
Length = 235
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + D L I + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLPPGAVLATDPPGAGPLTIEQGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G+ + A LR++ L A+ + E E EF++ L +++ G+ G++ +
Sbjct: 63 FAGVKDRTGAEALRNILLIAEIDPEEVPEDPE-EFYDYQLMDLDVITEDGQEIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
+ + + ++ +IPF + V E++L E + +I+P L+ + + D
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLHEQRAVINPPRGLLDPDEADVASERDAS 181
Query: 183 LDSAGKKS 190
Sbjct: 182 RTETNTTP 189
>gi|330959142|gb|EGH59402.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 179
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L + R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYDICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL V++ ++ +D
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAVDMGAGEMKVD 174
>gi|170017562|ref|YP_001728481.1| RimM protein, required for 16S rRNA processing [Leuconostoc citreum
KM20]
gi|209573566|sp|B1MZT5|RIMM_LEUCK RecName: Full=Ribosome maturation factor rimM
gi|169804419|gb|ACA83037.1| RimM protein, required for 16S rRNA processing [Leuconostoc citreum
KM20]
Length = 172
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNR----ELRILKMYR 55
M K + + TI THG+ GEV I + + D + + + + +
Sbjct: 1 MTK-ENYFKVGTIVNTHGIRGEVKIMAITDFAADRFKKGAALQIETKQGFVPVTVQSSRL 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F G+ NI+ + + +Y + E L +DE++ ++ + G+
Sbjct: 60 HKNMWLVLFEGVTNINEIEKYKTNDIYVYGE--AREALGDDEYYYDEIIDSRVVSLSGEA 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + +K + LIP V V++ I ID + L+
Sbjct: 118 IGVVSEIMTTGANDVWVVKRPGQSDALIPMIDDVVKSVDVANKLITIDVLEGLLD 172
>gi|73542224|ref|YP_296744.1| 16S rRNA-processing protein [Ralstonia eutropha JMP134]
gi|109893038|sp|Q46Y83|RIMM_RALEJ RecName: Full=Ribosome maturation factor rimM
gi|72119637|gb|AAZ61900.1| 16S rRNA processing protein RimM [Ralstonia eutropha JMP134]
Length = 221
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 26/188 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL------------ 48
D LV + +G +G+ G + ++ +AN+ L R+ L + L
Sbjct: 38 PDDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTPPQAGLVATAEASRAQAV 97
Query: 49 --RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEM 106
R+ + + +A +G+ + + A L+ +++ +R DF E E+EF+ DL
Sbjct: 98 CVRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPE--ENEFYWVDLIGC 155
Query: 107 ETFDRQGKYWGQVCGVYNFGAGSILEI--KNTMEK--TFLIPFTKFAVLEVNLQENKILI 162
+ QG+ G+V G+ + GA IL++ K L+PF + V+ +I++
Sbjct: 156 AVSNEQGELLGEVSGLIDNGAHQILQVAYALPDGKAGERLVPFVDAFLRTVDTAGKRIVV 215
Query: 163 DPIAAGLN 170
D GL+
Sbjct: 216 D---WGLD 220
>gi|238921087|ref|YP_002934602.1| 16S rRNA-processing protein RimM [Edwardsiella ictaluri 93-146]
gi|238870656|gb|ACR70367.1| 16S rRNA processing protein RimM, putative [Edwardsiella ictaluri
93-146]
Length = 184
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 73/185 (39%), Gaps = 20/185 (10%)
Query: 1 MVKLD--------KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNREL 48
MV + V++ +G+ +G+ G + + S + + Y + + +
Sbjct: 1 MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAI 60
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+ N+ ++ GID+ +A+ + + ++ L++ +++ DL +
Sbjct: 61 ELESWRSHNQDWVVKIKGIDDRDAANTMVNREIVVDESQLPS--LDDGDYYWKDLMGCQV 118
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILI 162
G G+V + G+ +L +K ++ K LIPF + +V+L I +
Sbjct: 119 VTVSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPFLDGQVIKKVDLTAKSIEV 178
Query: 163 DPIAA 167
D
Sbjct: 179 DWDPG 183
>gi|315634967|ref|ZP_07890248.1| 16S rRNA processing protein RimM [Aggregatibacter segnis ATCC
33393]
gi|315476229|gb|EFU66980.1| 16S rRNA processing protein RimM [Aggregatibacter segnis ATCC
33393]
Length = 177
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Query: 1 MVKLDKLVL-MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYR 55
M + + + +G+T+G+ G + I S + Y + + +
Sbjct: 1 MNMQQQRIETVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGQWQPTELENWRH 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N I G+D+ +A L ++++ F +LEE +++ DL + +G
Sbjct: 61 HNHELIVKLKGVDDREAAQTLANVEIGVDLSVFP--QLEEGDYYWHDLIGCAVVNLEGYA 118
Query: 116 WGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L +K ++ LIPF + V V+ I +D A
Sbjct: 119 MGTVTEMMETGSNDVLVVKANVKDAFGKQERLIPFLYEQVVKRVDPATKTITVDWDAG 176
>gi|238765367|ref|ZP_04626291.1| Ribosome maturation factor rimM [Yersinia kristensenii ATCC 33638]
gi|238696409|gb|EEP89202.1| Ribosome maturation factor rimM [Yersinia kristensenii ATCC 33638]
Length = 186
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ +++ +G+T+G+ G + + S N + Y + + + + R ++
Sbjct: 14 PEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQDGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ Q ELEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIIVDSQQLP--ELEEDDYYWKDLMGCQVVTTAGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 185
>gi|282850090|ref|ZP_06259472.1| 16S rRNA processing protein RimM [Veillonella parvula ATCC 17745]
gi|282580279|gb|EFB85680.1| 16S rRNA processing protein RimM [Veillonella parvula ATCC 17745]
Length = 165
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 2/167 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K + L+ + I HG+ G++ I + P D +E + + +
Sbjct: 1 MKHNDLITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDGKEYHVASARFHKQFVL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F I + ++A ++ +R+D EL E ++ D+ +E D G G V
Sbjct: 61 ASFKEIPDRNTAELFGKKEIQVRREDL--VELPEGRYYIFDIIGLEVQDTNGNVLGTVTD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + E L + V +++++ +++DP
Sbjct: 119 VLQPGANDVYVVSKDGEPDQLFAAIEEVVKDIDVENKLMIVDPPEWI 165
>gi|253990677|ref|YP_003042033.1| 16S rRNA-processing protein RimM [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782127|emb|CAQ85291.1| 16s rrna processing protein rimm [Photorhabdus asymbiotica]
Length = 185
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
K +++ +G+ +G+ G + + S + ++ Y + + + + + N+ +
Sbjct: 15 KPIVLGKLGSAYGIRGWLRVFSSTEHAENIFEYQPWFIQRAGRWQHIELEAWKHHNQDMV 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A+ L + ++ + EL+ +++ DL + + G G +
Sbjct: 75 IKIKGIDDRDAANLLTNCEIIVDSEQLP--ELDAGDYYWKDLMGCQVVNTAGYSLGTISD 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K LIPF + +V+L I +D
Sbjct: 133 MMETGSNDVMVVKANLKDAFGIKERLIPFLDGQVIKKVDLATKTIEVDWDPG 184
>gi|239928687|ref|ZP_04685640.1| 16S rRNA-processing protein [Streptomyces ghanaensis ATCC 14672]
gi|291437011|ref|ZP_06576401.1| 16S rRNA processing protein [Streptomyces ghanaensis ATCC 14672]
gi|291339906|gb|EFE66862.1| 16S rRNA processing protein [Streptomyces ghanaensis ATCC 14672]
Length = 188
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 83/186 (44%), Gaps = 5/186 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L I + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATEPASAGPLTIETGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + ++A LR+ L A+ + E E+ E+++ L +++ G+ G++ +
Sbjct: 63 FEGVRDRNAAEALRNTLLIAEVDPEERPEDED-EYYDHQLIDLDVVTADGEQVGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ + ++ +PF + V E++L E + +I P +++ +++ D
Sbjct: 122 HLPTQDLFVVERPDGSEVFVPFVEEIVAEIDLVEQRAVITPPPGLIDDRAVRDEAADGHG 181
Query: 184 DSAGKK 189
S +
Sbjct: 182 ASPRDE 187
>gi|212712911|ref|ZP_03321039.1| hypothetical protein PROVALCAL_04008 [Providencia alcalifaciens DSM
30120]
gi|212684456|gb|EEB43984.1| hypothetical protein PROVALCAL_04008 [Providencia alcalifaciens DSM
30120]
Length = 182
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 1 MVKLDKLV------LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRI 50
M K KLV ++ +G +G+ G + + S + + Y + S + + I
Sbjct: 1 MSKQTKLVPPSNPIVLGKLGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRSGQWQHIEI 60
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
NK I G+++ +A+ L + ++ D L+ DE++ DL
Sbjct: 61 EDWKHHNKDIIVKLKGVEDRDAAALLTNFEIAVDSTQLPD--LDNDEYYWKDLMGCHVVT 118
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDP 164
+G G V + G+ +L IK ++ K L+PF + +V+L I ++
Sbjct: 119 SEGYDLGTVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLSTKIIEVEW 178
Query: 165 IAA 167
Sbjct: 179 DPG 181
>gi|227530563|ref|ZP_03960612.1| 16S rRNA processing protein RimM [Lactobacillus vaginalis ATCC
49540]
gi|227349521|gb|EEJ39812.1| 16S rRNA processing protein RimM [Lactobacillus vaginalis ATCC
49540]
Length = 169
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKNKR 59
K + I THG+ GEV + + + + EL I
Sbjct: 2 KFYNVGKIVNTHGIRGEVRVIPTTDFVDERFAKDAKLYLANQQGEPLELTIESSRPHKGS 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G DNI+ R+ +L +D + LEE ++ + + G+ G++
Sbjct: 62 ILVKFVGYDNINDVENFRNRELRVSEED--QQPLEEGSYYYHQIIGLTVKTIDGRELGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA + ++ + L+P V +V+L + ++ +
Sbjct: 120 KEILSPGANDVWVVQRPHQADLLLPKIDDVVKKVDLDNGVVEVELLEGL 168
>gi|163839830|ref|YP_001624235.1| 16S rRNA-processing protein RimM [Renibacterium salmoninarum ATCC
33209]
gi|162953306|gb|ABY22821.1| 16S rRNA processing protein [Renibacterium salmoninarum ATCC 33209]
Length = 201
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 5/167 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIAT 63
V + IG HG+ GEV ++ + P + + L + +
Sbjct: 29 VHVGRIGKPHGIRGEVTVEVLTDTPQERFSAGAVFSTEPTSAGPLTVETARWNKDILLLG 88
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F +++ + A LR +L + +E E D ++ +L +E + G+V +
Sbjct: 89 FEEVNDRNRAETLRGTRLIFETDSVASDESESDSWYEHELIGLEAR-VGDQTVGKVSALN 147
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A +L I + L+PF V EV++ I + P +
Sbjct: 148 PMPAQDLLVITTAAGEEVLVPFVAEIVPEVDIAAGFIRLVPPGGLFD 194
>gi|144898176|emb|CAM75040.1| 16S rRNA-processing protein RimM [Magnetospirillum gryphiswaldense
MSR-1]
Length = 180
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFIATFS 65
V + I HG+ G V + S+ +P+D+ Y ++ R ++ +AT
Sbjct: 7 VCIGAIVGAHGVRGAVRVKSFTADPLDVVAYGPVEDEAGKRRFKLKVTGEAKGFVLATLD 66
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+++ +A L+ LY R E+EEDEF TDL + G+ G V GV NF
Sbjct: 67 GVNDRDAAEALKGTGLYVSRDRLP--EVEEDEFLYTDLVGLSALGLDGQVIGTVKGVANF 124
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
GAG +L+I + + L+PFTK AV V++ + ++++DP
Sbjct: 125 GAGDLLDIIRPGQGSLLVPFTKVAVPVVDMVKRQVVVDPP 164
>gi|238752939|ref|ZP_04614401.1| Ribosome maturation factor rimM [Yersinia rohdei ATCC 43380]
gi|238708847|gb|EEQ01103.1| Ribosome maturation factor rimM [Yersinia rohdei ATCC 43380]
Length = 186
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + R ++
Sbjct: 14 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + ELEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIVVDSKQLP--ELEEDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 185
>gi|261346217|ref|ZP_05973861.1| 16S rRNA processing protein RimM [Providencia rustigianii DSM 4541]
gi|282565523|gb|EFB71058.1| 16S rRNA processing protein RimM [Providencia rustigianii DSM 4541]
Length = 182
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + S + + I NK I
Sbjct: 12 NPIVLGKLGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRSGQWQHIEIEDWKHHNKDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+++ +A+ L + ++ ELE +E++ DL G G V
Sbjct: 72 VKLKGVEDRDAATLLTNFEIAVDSTQLP--ELENNEYYWKDLMGCHVVTLDGYDLGTVVD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I ++
Sbjct: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLSAQVIEVEWDPG 181
>gi|224584528|ref|YP_002638326.1| 16S rRNA-processing protein RimM [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224469055|gb|ACN46885.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 185
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 15 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 75 IKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVID 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V L I +D
Sbjct: 133 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVVLATRTIEVDWDPG 184
>gi|225018484|ref|ZP_03707676.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
gi|224948755|gb|EEG29964.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
Length = 174
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 8/172 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIA 62
+ + I THG+ GEV I + + L + + + + + +
Sbjct: 5 QFLETGKIVATHGIAGEVRIQPWCDEAEFLTEFDALYFDAAGKTQRTVERARVHKNVVVV 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KYWGQVC 120
F G+D++ A LR+ +Y R++ EL E +F DL +E D +G +C
Sbjct: 65 KFKGVDSVEEAQSLRNQIVYIDREEL---ELPEGTYFIQDLIGLEVLDADDPQTVYGTLC 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V GA + I+ LIP V++ +L N++ I P+ ++
Sbjct: 122 EVSQPGANDVYHIRRPDGTENLIPAIPDVVVQTDLDGNRMFIRPLKGLFDDE 173
>gi|332686530|ref|YP_004456304.1| 16S rRNA processing protein RimM [Melissococcus plutonius ATCC
35311]
gi|332370539|dbj|BAK21495.1| 16S rRNA processing protein RimM [Melissococcus plutonius ATCC
35311]
Length = 175
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELR-ILKMYRKNKRF 60
+ + + I T G+ GEV + S + P + + L++ D + ++K +RK+K F
Sbjct: 4 EYLNVGKIVNTQGIKGEVRVISQTDFPEERYKRGAKLTLFNKDKEPIELVIKSHRKHKNF 63
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I +F +I+ RD L K+ D L E+EF+ ++ + D QG+ G +
Sbjct: 64 DILSFENHPSINDVENYRDGILKVKKSQLSD--LPENEFYYHEIIGLTVIDDQGQKIGHI 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K L+P+ + V+L + + +++
Sbjct: 122 KEILSPGANDVWVVKQNDGTELLLPYIDSVIQSVDLTNKSVQVIIPEGLIDDE 174
>gi|257878613|ref|ZP_05658266.1| ribosome maturation factor rimM [Enterococcus faecium 1,230,933]
gi|257883127|ref|ZP_05662780.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,502]
gi|257891874|ref|ZP_05671527.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,410]
gi|257894444|ref|ZP_05674097.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,408]
gi|260559326|ref|ZP_05831508.1| ribosome maturation factor rimM [Enterococcus faecium C68]
gi|261208002|ref|ZP_05922680.1| ribosome maturation factor rimM [Enterococcus faecium TC 6]
gi|289566902|ref|ZP_06447309.1| 16S rRNA processing protein RimM [Enterococcus faecium D344SRF]
gi|293563834|ref|ZP_06678267.1| 16S rRNA processing protein RimM [Enterococcus faecium E1162]
gi|293567277|ref|ZP_06678631.1| 16S rRNA processing protein RimM [Enterococcus faecium E1071]
gi|294615593|ref|ZP_06695449.1| 16S rRNA processing protein RimM [Enterococcus faecium E1636]
gi|294619817|ref|ZP_06699207.1| 16S rRNA processing protein RimM [Enterococcus faecium E1679]
gi|294622897|ref|ZP_06701810.1| 16S rRNA processing protein RimM [Enterococcus faecium U0317]
gi|314938073|ref|ZP_07845381.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a04]
gi|314943595|ref|ZP_07850352.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133C]
gi|314949232|ref|ZP_07852581.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0082]
gi|314952618|ref|ZP_07855610.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133A]
gi|314992466|ref|ZP_07857888.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133B]
gi|314997371|ref|ZP_07862327.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a01]
gi|257812841|gb|EEV41599.1| ribosome maturation factor rimM [Enterococcus faecium 1,230,933]
gi|257818785|gb|EEV46113.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,502]
gi|257828234|gb|EEV54860.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,410]
gi|257830823|gb|EEV57430.1| ribosome maturation factor rimM [Enterococcus faecium 1,231,408]
gi|260074686|gb|EEW63006.1| ribosome maturation factor rimM [Enterococcus faecium C68]
gi|260077760|gb|EEW65473.1| ribosome maturation factor rimM [Enterococcus faecium TC 6]
gi|289161308|gb|EFD09201.1| 16S rRNA processing protein RimM [Enterococcus faecium D344SRF]
gi|291590026|gb|EFF21820.1| 16S rRNA processing protein RimM [Enterococcus faecium E1071]
gi|291591536|gb|EFF23189.1| 16S rRNA processing protein RimM [Enterococcus faecium E1636]
gi|291593950|gb|EFF25434.1| 16S rRNA processing protein RimM [Enterococcus faecium E1679]
gi|291597669|gb|EFF28822.1| 16S rRNA processing protein RimM [Enterococcus faecium U0317]
gi|291604204|gb|EFF33705.1| 16S rRNA processing protein RimM [Enterococcus faecium E1162]
gi|313588558|gb|EFR67403.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a01]
gi|313593008|gb|EFR71853.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133B]
gi|313595286|gb|EFR74131.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133A]
gi|313597713|gb|EFR76558.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133C]
gi|313642562|gb|EFS07142.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0133a04]
gi|313644373|gb|EFS08953.1| 16S rRNA processing protein RimM [Enterococcus faecium TX0082]
Length = 173
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPVELTVKSHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ + RD L + + +L E+EF+ ++ + G G
Sbjct: 61 NFDLLSFEGHPSINDVEKYRDGILKVSKDN--SVDLAENEFYYHEIIGLHVL-EDGTELG 117
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ + L+P+ V EV+L+ + ++ +++
Sbjct: 118 KVKEILSPGANDVWVVQRPKKADILLPYIASVVKEVDLEAGVVRVEIPEGLIDDE 172
>gi|253689571|ref|YP_003018761.1| 16S rRNA processing protein RimM [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259585648|sp|C6DCQ0|RIMM_PECCP RecName: Full=Ribosome maturation factor rimM
gi|251756149|gb|ACT14225.1| 16S rRNA processing protein RimM [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 182
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
++M IG+ +G+ G + + S + + Y + + + + I N+ I
Sbjct: 12 NPIVMGKIGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQSKSGWQLVEIEGWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+ +A+ L + ++ D L E +++ DL + G G+V
Sbjct: 72 IKVKGTDDRDAANLLTNCEIVVDSSQLPD--LGEGDYYWKDLMGCQVVTVAGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF T+ V V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSTQTIEVDWDPG 181
>gi|116629444|ref|YP_814616.1| RimM protein, required for 16S rRNA processing [Lactobacillus
gasseri ATCC 33323]
gi|282850845|ref|ZP_06260219.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311110908|ref|ZP_07712305.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
gi|122273618|sp|Q044E4|RIMM_LACGA RecName: Full=Ribosome maturation factor rimM
gi|116095026|gb|ABJ60178.1| 16S rRNA processing protein RimM [Lactobacillus gasseri ATCC 33323]
gi|282557797|gb|EFB63385.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311066062|gb|EFQ46402.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
Length = 173
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKR 59
+ + + I + HGL GEV +++ + P + +R + ++D + I+ R++K+
Sbjct: 1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQ 60
Query: 60 F-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
F + F ID I A ++ +LY D +EL E ++ D+ +D + G+ G
Sbjct: 61 FYLVKFEEIDGIDQAEKVCGKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EIK K+F IP + V +V+L +I + + +
Sbjct: 119 VLANIETPGANDIWEIKPEHGKSFWIPNIESVVNKVDLANKRIEVTLLEGLRDEN 173
>gi|291618575|ref|YP_003521317.1| RimM [Pantoea ananatis LMG 20103]
gi|291153605|gb|ADD78189.1| RimM [Pantoea ananatis LMG 20103]
Length = 185
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 1 MVKLD---------KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRE 47
MV + +++ +G +G+ G + + S + + Y + + ++
Sbjct: 1 MVSMSRQLAAQAPVNPIVLGKMGAAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGKWQQ 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + N+ I GID+ +A++L + ++ L+ E++ DL +
Sbjct: 61 VELDGWKHHNQDLIIKVKGIDDRDAAAQLTNCEIQVDSTQLPA--LDNGEYYWKDLMGCK 118
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKIL 161
+ +G G+V + G+ +L +K ++ + LIPF + +V+L I
Sbjct: 119 VVNVEGYELGKVVDMMETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKKVDLSTGLIE 178
Query: 162 IDPIAA 167
+D
Sbjct: 179 VDWDPG 184
>gi|302344584|ref|YP_003809113.1| 16S rRNA processing protein RimM [Desulfarculus baarsii DSM 2075]
gi|301641197|gb|ADK86519.1| 16S rRNA processing protein RimM [Desulfarculus baarsii DSM 2075]
Length = 179
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 7/178 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKR 59
+LV M + GL GEV I S+A + R + + R+L R
Sbjct: 4 QRLVTMGRSAGSFGLRGEVKISSFAEDHEVFARAGVVYLGAEPGVAKPYRLLGARWHGGR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ T G+ A+ L LY +R+D L +DEF+ +L QG+ G V
Sbjct: 64 LLMTLEGVTTREDAAALGGAWLYLRREDLP--PLADDEFYWFELIGARARTAQGQDLGHV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
+ + GA L ++ K +IP + ++E++L +++DP L P
Sbjct: 122 FALTDNGAHDNLVLRGPGGKEAMIPLVEGVLVEMDLAAGLVVVDPPEGLLEAQGWDEP 179
>gi|24372936|ref|NP_716978.1| 16S rRNA-processing protein [Shewanella oneidensis MR-1]
gi|38372489|sp|Q8EH71|RIMM_SHEON RecName: Full=Ribosome maturation factor rimM
gi|24347072|gb|AAN54423.1|AE015579_12 16S rRNA processing protein RimM [Shewanella oneidensis MR-1]
Length = 177
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G+ HG+ G + I +Y ++ + Y + + + RE+++++ +
Sbjct: 2 MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ 61
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ Q L EDEF+ DL E + G
Sbjct: 62 GKAVVAELEGVTTRERAQMLTNCEIGILPQQMNA--LPEDEFYWRDLIGCEVINTTGYNM 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFTK-FAVLEVNLQENKILID 163
G V + G+ +L +K + ++PF +L+V++Q +IL+D
Sbjct: 120 GIVDQIVETGSNDVLLVKANAKDSFGKVERMVPFVPGQFILKVDVQGKQILVD 172
>gi|331269651|ref|YP_004396143.1| 16S rRNA processing protein RimM [Clostridium botulinum BKT015925]
gi|329126201|gb|AEB76146.1| 16S rRNA processing protein RimM [Clostridium botulinum BKT015925]
Length = 162
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THGL GE+ + ++ D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGLKGEIKLLPSTDDVERFKELKKAYIDGEVIEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+D+I A L++ + R+D +L ED ++ D+ +D + G+V +
Sbjct: 61 IKDVDSIEQAQRLKNKYIKVTRED--AAKLPEDCYYEADIVGCTVYDENDEELGKVDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + IK + LIP K ++ +++ KI+I P+
Sbjct: 119 RTGSNDVYWIK--GKNEVLIPAIKSVIVSIDVNSKKIVIKPLE 159
>gi|15644316|ref|NP_229368.1| 16S rRNA processing protein, putative [Thermotoga maritima MSB8]
gi|148270354|ref|YP_001244814.1| 16S rRNA processing protein RimM [Thermotoga petrophila RKU-1]
gi|170289020|ref|YP_001739258.1| 16S rRNA processing protein RimM [Thermotoga sp. RQ2]
gi|6685868|sp|Q9X1Q4|RIMM_THEMA RecName: Full=Ribosome maturation factor rimM
gi|166226486|sp|A5IM15|RIMM_THEP1 RecName: Full=Ribosome maturation factor rimM
gi|4982137|gb|AAD36635.1|AE001802_4 16S rRNA processing protein, putative [Thermotoga maritima MSB8]
gi|147735898|gb|ABQ47238.1| 16S rRNA processing protein RimM [Thermotoga petrophila RKU-1]
gi|170176523|gb|ACB09575.1| 16S rRNA processing protein RimM [Thermotoga sp. RQ2]
Length = 176
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 9/171 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
L++ V + I THGL GEV Y N+ +L+ VLY+++ + L + + R N
Sbjct: 9 LNERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNSEKKAFYNLTVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID I +A ++ +++ K ++ +L EDE++ ++ + + F G+ G
Sbjct: 69 KLFLIRFKSIDTIEAAERIKGCEVFIKYEELP--KLSEDEYYFYEILDCDVFYESGENVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V + G+ +L ++ +K LIP TK ++E++ KI+ +
Sbjct: 127 KVVDIIETGSNDVLVVRKK-KKETLIPMTKDCIVEIDKGAKKIIAKEMEWI 176
>gi|253702082|ref|YP_003023271.1| 16S rRNA processing protein RimM [Geobacter sp. M21]
gi|251776932|gb|ACT19513.1| 16S rRNA processing protein RimM [Geobacter sp. M21]
Length = 172
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDN--RELRILKMYRKNKR 59
K +L+ I T G+ G++ + +A + LN + S ++ KR
Sbjct: 4 SKKLLIGKIQGTQGIKGQLRVIPFAGDASSISQLNEVFVKSPTGALEPFAVVSAKAHGKR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I T DNI+ L ++YA R EL +DEF+ +DL ++ G+ G++
Sbjct: 64 VILTLRPFDNINQVLHLVGREIYADRVSLP--ELPDDEFYWSDLLGLQVATSDGEELGEL 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ + +K + LIP + VL ++L E ++ + L+
Sbjct: 122 VDIIETGSNDVYVVK-KDGREVLIPALEDVVLSIDLAEGRMTVSLPEGLLD 171
>gi|330872810|gb|EGH06959.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 179
Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKDLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +++ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVE 174
>gi|313884836|ref|ZP_07818588.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619527|gb|EFR30964.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDN-RELRILKMYRKNKR 59
+ + + THG+ G++ + + + P Y+L + ++ +L +
Sbjct: 2 EYYRIGRVVNTHGIRGQIKVIADTDFPESRFASGNKLYILKDDQALAQVTVLDSRQAKGT 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+I +F DNI+ + L + EELE+D +++ + +E QG G++
Sbjct: 62 YILSFEEFDNINQVEGFKGSWLAIDSSN--QEELEDDVYYHHQIIGLEVVTHQGLKLGKI 119
Query: 120 CGVYNFGAGSILEIKN--TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ G+ + +K + LIP+ V EV+L++ +++I + +++
Sbjct: 120 KEILQLGSNDVWVVKRHENNKADALIPYIDDVVKEVDLEKGQVIISLMEGLIDDE 174
>gi|21957630|gb|AAM84479.1|AE013692_8 hypothetical protein y0895 [Yersinia pestis KIM 10]
gi|45435105|gb|AAS60665.1| 16S rRNA processing protein [Yersinia pestis biovar Microtus str.
91001]
Length = 186
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 14 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDREAANLLTNCEIIVDSTQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 185
>gi|167037686|ref|YP_001665264.1| 16S rRNA-processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040347|ref|YP_001663332.1| 16S rRNA-processing protein RimM [Thermoanaerobacter sp. X514]
gi|256750720|ref|ZP_05491605.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914431|ref|ZP_07131747.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307724333|ref|YP_003904084.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|320116101|ref|YP_004186260.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326389500|ref|ZP_08211067.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
gi|238687582|sp|B0K1U8|RIMM_THEPX RecName: Full=Ribosome maturation factor rimM
gi|238687661|sp|B0K9W5|RIMM_THEP3 RecName: Full=Ribosome maturation factor rimM
gi|166854587|gb|ABY92996.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X514]
gi|166856520|gb|ABY94928.1| 16S rRNA processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750303|gb|EEU63322.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889366|gb|EFK84512.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307581394|gb|ADN54793.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|319929192|gb|ADV79877.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994505|gb|EGD52930.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
Length = 167
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 8/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELR--ILKMYRKNK 58
+ + + + HG+ GEV + N P DL ++ + R + I + +K
Sbjct: 1 MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
GID A +L+ L Q+ ELEE+E+F DL M+ + +G + G
Sbjct: 61 GVCVKLKGIDTRGDAEKLKGAFLKVDSQN--ALELEENEYFIKDLVGMKVYTEEGSFLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ V GA + IK E+ LIP K V +V++ +++ +
Sbjct: 119 LVEVLKTGANDVYVIKT-EEREILIPAIKEVVKKVDVDNKVMVVHLLEGL 167
>gi|268319237|ref|YP_003292893.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
gi|262397612|emb|CAX66626.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
Length = 173
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILK-MYRKNK 58
+ + + I + HGL GEV +++ + P + +R + +N E I++ R +
Sbjct: 1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
++ F ID+I A ++ +LY D +EL E ++ D+ +D + G+ G
Sbjct: 61 FYLVKFEKIDDIDQAEKICSKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EIK+ K+F IP + V +V+L +I + + +
Sbjct: 119 VLENIETPGANDIWEIKSEKGKSFWIPNIESVVKKVDLANKRIEVTLLEGLRDEN 173
>gi|182435680|ref|YP_001823399.1| 16S rRNA-processing protein RimM [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776305|ref|ZP_08235570.1| Ribosome maturation factor rimM [Streptomyces cf. griseus
XylebKG-1]
gi|238689008|sp|B1VYW1|RIMM_STRGG RecName: Full=Ribosome maturation factor rimM
gi|178464196|dbj|BAG18716.1| putative 16S rRNA processing protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326656638|gb|EGE41484.1| Ribosome maturation factor rimM [Streptomyces cf. griseus
XylebKG-1]
Length = 198
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIAT 63
+++A IG HG+ GEV ++ + P L + + + L + + R +
Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTVEAGRVHSGRLLLR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+ + A LR+ L A+ + E E+ EF++ L +++ G G++ +
Sbjct: 63 FEGVRDRTGAEALRNTLLIAEVDPDELPEEED-EFYDHQLIDLDVVLADGTGIGRITEIS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT---MKNPQYD 180
+ + + ++ +IPF + V E++L+E + +I P ++ + + +
Sbjct: 122 HLPSQDLFIVERPDGSEVMIPFVEEIVTEIDLEEQRAVITPPPGLIDESEAVVASSRDEE 181
Query: 181 CPLDSAGKKS 190
++G ++
Sbjct: 182 TGEAASGDEA 191
>gi|327394955|dbj|BAK12377.1| 16S rRNA processing protein RimM [Pantoea ananatis AJ13355]
Length = 182
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 12 NPIVLGKMGAAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGKWQQVELDGWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A++L + ++ L+ E++ DL + + +G G+V
Sbjct: 72 IKVKGIDDRDAAAQLTNCEIQVDSTQLPA--LDNGEYYWKDLMGCKVVNVEGYELGKVVD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ + LIPF + +V+L I +D
Sbjct: 130 MMETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKKVDLSTGLIEVDWDPG 181
>gi|293556485|ref|ZP_06675059.1| 16S rRNA processing protein RimM [Enterococcus faecium E1039]
gi|291601364|gb|EFF31642.1| 16S rRNA processing protein RimM [Enterococcus faecium E1039]
Length = 173
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 74/175 (42%), Gaps = 9/175 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPVELTVKSHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +F G +I+ + RD L + + +L E+EF+ ++ + G G
Sbjct: 61 NFDLLSFEGHPSINDVEKYRDGILKVSKDN--SVDLAENEFYYHEIIGLHVL-EDGTELG 117
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + GA + ++ + L+P+ V EV+L+ + ++ +++
Sbjct: 118 KVKEILSPGANDVWVVQRPEKADILLPYIASVVKEVDLEAGVVRVEIPEGLIDDE 172
>gi|268609627|ref|ZP_06143354.1| putative 16S rRNA processing protein [Ruminococcus flavefaciens
FD-1]
Length = 167
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNK 58
M K + + I TTHG+ GEV I Y ++P L + + + E+ I +
Sbjct: 1 MKK--EYLEAGKIVTTHGIRGEVKIMPYTDSPELLAEFDRLFIGKNRDEVIITRSRVFKN 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
IA G+D +A +LR+ LY R D EL++D +F DL +E D K +G
Sbjct: 59 TVIAKIEGVDTPEAAEKLRNKVLYMHRDDL---ELDDDTYFIQDLIGLEVRDADTDKVYG 115
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ V GA + IK + +LIP V+ ++ N + I P+ +
Sbjct: 116 KIADVLETGANDVYVIKGED-REYLIPAIADVVVSTDIDNNLMTIRPLDGLFD 167
>gi|88606853|ref|YP_505787.1| 16S rRNA processing protein RimM [Anaplasma phagocytophilum HZ]
gi|109892998|sp|Q2GIL4|RIMM_ANAPZ RecName: Full=Ribosome maturation factor rimM
gi|88597916|gb|ABD43386.1| 16S rRNA processing protein RimM [Anaplasma phagocytophilum HZ]
Length = 171
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKR 59
M D +L+ I HG+ G V I ++ ++P D+ Y ++ + L++ + KN
Sbjct: 1 MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGC 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA SGID+ SA L++ KLY +L+ DEF+ +L + +G V
Sbjct: 61 VIAKISGIDDRCSAEALKNKKLYVSSSCLP--KLKNDEFYKDELIGLSVKLPDDTIFGIV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
V+NFG+G I+EI K + FT ++++ ++ I P
Sbjct: 119 TEVFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMTIVPPE 165
>gi|116873228|ref|YP_850009.1| 16S rRNA processing protein rimM [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|123463935|sp|A0AJP8|RIMM_LISW6 RecName: Full=Ribosome maturation factor rimM
gi|116742106|emb|CAK21230.1| 16S rRNA processing protein rimM [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 169
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ IH +++ L K +LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGLTGIHQVERMKEGVLKIKETQ--QTDLEENEFYFHEIIGCTVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + +K +K LIP+ V E+N + KI I+ + L+
Sbjct: 119 IEILTPGANDVWVVKGADKKEKLIPYIADVVKEINTNDKKITIEVMEGLLD 169
>gi|42519386|ref|NP_965316.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227890251|ref|ZP_04008056.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|59798804|sp|Q74IQ5|RIMM_LACJO RecName: Full=Ribosome maturation factor rimM
gi|41583674|gb|AAS09282.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227849065|gb|EEJ59151.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|329667091|gb|AEB93039.1| 16S rRNA processing protein [Lactobacillus johnsonii DPC 6026]
Length = 173
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILK-MYRKNK 58
+ + + I + HGL GEV +++ + P + +R + +N E I++ R +
Sbjct: 1 MTEYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVENTRRHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
++ F ID+I A ++ +LY D +EL E ++ D+ +D + G+ G
Sbjct: 61 FYLVKFEKIDDIDQAEKICSKELYVAETD--QQELPEGSYYFKDILNCPVYDAETGEKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EIK K+F IP + V +V+L +I + + +
Sbjct: 119 VLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKRIEVTLLEGLRDEN 173
>gi|326803874|ref|YP_004321692.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650986|gb|AEA01169.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
Length = 179
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRE--LRILKMYRKNK 58
+ + I T GL GEV + + + P + V++ + N E + ++ +
Sbjct: 3 QEFYRVGKIVNTQGLKGEVRVIATTDFPEKRFQPGSQLVIFDHKNIEAWVEVVSHRQHKN 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I +F G+ +I+ + +++ ++ ++L E EFF + + +D GK G+
Sbjct: 63 FHILSFKGMTSINDVEGFKGMEIMVAAKERHSDDLAEGEFFYDQIIGLVVYDLTGKELGK 122
Query: 119 VCGVYNFGAGSILEIKN--TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V + G + I+ +K LIP+ V ++L + KI+ID + +++
Sbjct: 123 VKTITQLGPNDVWTIQRNQPGKKDVLIPYIDDVVKSIDLDDKKIVIDALEGLIDDEG 179
>gi|187933452|ref|YP_001885446.1| 16S rRNA-processing protein RimM [Clostridium botulinum B str.
Eklund 17B]
gi|238691615|sp|B2TJ30|RIMM_CLOBB RecName: Full=Ribosome maturation factor rimM
gi|187721605|gb|ACD22826.1| 16S rRNA processing protein RimM [Clostridium botulinum B str.
Eklund 17B]
Length = 165
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++++ + I THG+ GEV + + + D +E I + + R I
Sbjct: 1 MEEIFKVGQIVNTHGIKGEVKVYPLTEDVNKFKKLKNVLIDGKERNIQSVKFQKDRVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID ++ A + + R + +LE D + DL +D G++ V
Sbjct: 61 IEGIDTMNDAETYKQKYIEIFRSNAP--KLEADTHYVVDLVGCMVYDSDNVELGKIFDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + + IK K LIP K VL++N+ KI+I P+ +
Sbjct: 119 STPSNDVYWIKEP--KQLLIPVLKDIVLDINIDNKKIVIKPVRQWQDED 165
>gi|168184652|ref|ZP_02619316.1| 16S rRNA processing protein RimM [Clostridium botulinum Bf]
gi|237795882|ref|YP_002863434.1| 16S rRNA-processing protein RimM [Clostridium botulinum Ba4 str.
657]
gi|182672310|gb|EDT84271.1| 16S rRNA processing protein RimM [Clostridium botulinum Bf]
gi|229261722|gb|ACQ52755.1| 16S rRNA processing protein RimM [Clostridium botulinum Ba4 str.
657]
Length = 164
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D E +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVFPLTDDMKRFKKLKEVFIDGEERKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D +G+ GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SIKLPKGSYFIADLIECRVIDEKGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K + L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVK--GKSEVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|307264847|ref|ZP_07546409.1| 16S rRNA processing protein RimM [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920105|gb|EFN50317.1| 16S rRNA processing protein RimM [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 167
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 8/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR--ELRILKMYRKNK 58
+ + + + HG+ GEV + N P DL ++ + R + I + +K
Sbjct: 1 MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRLHKYDIEYVKIISK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
GID A +L+ L Q+ ELEE+E+F DL M+ + +G + G
Sbjct: 61 GVCVKLKGIDTRGDAEKLKGAFLKVDSQN--ALELEENEYFIKDLVGMKVYTEEGSFLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ V GA + IK E+ LIP K V +V++ +++ +
Sbjct: 119 LVEVLKTGANDVYVIKT-EEREILIPAIKEVVKKVDVDNKVMVVHLLEGL 167
>gi|145600322|ref|YP_001164398.1| 16S rRNA-processing protein RimM [Yersinia pestis Pestoides F]
gi|166226489|sp|A4TQ63|RIMM_YERPP RecName: Full=Ribosome maturation factor rimM
gi|145212018|gb|ABP41425.1| 16S rRNA processing protein RimM [Yersinia pestis Pestoides F]
Length = 182
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 10 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ LEED+++ DL + G G++
Sbjct: 70 LIIKVKGVDDREAANLLTNCEIIVDSTQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 128 IDMMETGSNDVMLVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 181
>gi|285017747|ref|YP_003375458.1| 16s rrna-processing protein [Xanthomonas albilineans GPE PC73]
gi|283472965|emb|CBA15470.1| probable 16s rrna-processing protein [Xanthomonas albilineans]
Length = 170
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + +L+ + G+ GE ++S+ + + RY + L ++
Sbjct: 1 MKDSQRRILLGRVLGAFGIRGEAKLESWTEPRLAIFRYQPWIVRKPDGSESTLTGVRGRA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K IA+ + + + LR ++Y R DE++ DLE ++ +G
Sbjct: 61 SGKSLIASLPEVSDRDAVEALRGTEIYVTRSSLPPPH--PDEYYWVDLEGLDVRTVEGVA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
GQV +++ GA +L ++ E+ L+PF V V+ + N I++D
Sbjct: 119 LGQVSHLFSTGANDVLVVR--GERERLVPFVQPDYVRSVDFEANLIVVD 165
>gi|290967719|ref|ZP_06559274.1| 16S rRNA processing protein RimM [Megasphaera genomosp. type_1 str.
28L]
gi|290782235|gb|EFD94808.1| 16S rRNA processing protein RimM [Megasphaera genomosp. type_1 str.
28L]
Length = 167
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M L+ L + I HG+ G+V I + P + + I
Sbjct: 1 MAALE-LFTIGKIVAPHGVRGDVRIYPDTDFPERFLQMKYGYIAGKRYEITAARFHKHVI 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+ + ++A L + +L R+D L+ ++ DL + +D Q Y G +
Sbjct: 60 LMKFAGVQDRNAAEALVNHELQVPREDL--MPLKPGRYYIFDLIGIPVYDLQNTYLGILT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V G+ + ++ + L V E+NL E+KI+++P
Sbjct: 118 EVLKTGSNDVYVVRTDNGEEQLFAAIPSVVKEINLDEHKIILNPPEW 164
>gi|322806711|emb|CBZ04280.1| 16s rRNAprocessing protein RimM [Clostridium botulinum H04402 065]
Length = 164
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D E +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEERKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D G+ GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDEDGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G + E+K L+P K V ++++ + I P+
Sbjct: 119 KTGNNDVYEVKGKS--EVLVPAIKDIVTNIDIESKTVTIKPLE 159
>gi|91794104|ref|YP_563755.1| 16S rRNA-processing protein [Shewanella denitrificans OS217]
gi|122968557|sp|Q12KJ4|RIMM_SHEDO RecName: Full=Ribosome maturation factor rimM
gi|91716106|gb|ABE56032.1| 16S rRNA processing protein RimM [Shewanella denitrificans OS217]
Length = 176
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + V++ +G++HG+ G + I +Y ++ + YV + RE+++ + +
Sbjct: 1 MSDNQQPVVLGKLGSSHGIKGWLKITAYTDSVEGIFDYVPWLIKDQGVWREVKVTQWRFQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K +A G+ A L + ++ + K EL++++F++ DL E + G
Sbjct: 61 GKAVVAELEGVTTREQAQMLTNCEIAILPEQMK--ELDDNDFYHRDLIGCEVTNVNGYNL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-----TFLIPFT-KFAVLEVNLQENKILID 163
G V + G+ +L +K + +IPF + + +V+LQ +I++D
Sbjct: 119 GIVDQIVETGSNDVLLVKANAKDAFGKVERMIPFVTEQFIKQVDLQGKQIVVD 171
>gi|134093875|ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimonas arsenicoxydans]
gi|209573562|sp|A4G2T6|RIMM_HERAR RecName: Full=Ribosome maturation factor rimM
gi|133737778|emb|CAL60823.1| 16S rRNA processing protein [Herminiimonas arsenicoxydans]
Length = 177
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKN 57
M + LVL+ I +GLNG V + Y+ + L + L + R++ +++ +
Sbjct: 1 MKVPEDLVLVGYISGAYGLNGWVRVRPYSADADALLNAKTWWLDKPEFRDVAMMQSKIHS 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A G+ +A L+ + R F L ++EF+ DL +E + QG G
Sbjct: 61 GDVVAQLMGVAGRDAAEALKGATVQIPRSHFPA--LSDNEFYWVDLIGLEVENLQGVRLG 118
Query: 118 QVCGVYNFGAGSILEIKNT--------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
QV + + GA IL + + LIPF + V+ ++ KI +D GL
Sbjct: 119 QVSDMMDNGAHPILRVAVPQTSEADPKAAQELLIPFVEQFVITIDQTAKKITVD---WGL 175
Query: 170 N 170
+
Sbjct: 176 D 176
>gi|330964076|gb|EGH64336.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 179
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L +++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVEKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVVKLKDLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL +N+ ++ ++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAINMAAGEMKVE 174
>gi|168214187|ref|ZP_02639812.1| 16S rRNA processing protein RimM [Clostridium perfringens CPE str.
F4969]
gi|170714269|gb|EDT26451.1| 16S rRNA processing protein RimM [Clostridium perfringens CPE str.
F4969]
Length = 165
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ L+++ I THGL GE+ + + + +++++ + + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++ V
Sbjct: 61 LEGINSIEEAEKLKRTYLEIERED--AIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + ++ +K L+P K VL +N+ E I I P
Sbjct: 119 QTPSNDVYWVQ--GKKEVLVPVLKDIVLNINMDEKLITIRP 157
>gi|328957320|ref|YP_004374706.1| 16S rRNA-processing protein RimM [Carnobacterium sp. 17-4]
gi|328673644|gb|AEB29690.1| 16S rRNA-processing protein RimM [Carnobacterium sp. 17-4]
Length = 171
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN--RELRILKMYRKN 57
+ L + I T G+ GEV + S + P + + L+ + +L + +
Sbjct: 1 MKTLYNVGKIVNTQGIKGEVRVISKTDFPEERYKKGSTLSLFQDGKLVTDLTVASHRKHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
I +F NI+ + RD L EL ++EF+ + + D + G
Sbjct: 61 NFDILSFENHPNINDVEKYRDGILKVSEDRL--TELPKNEFYLHQIVGLTVQDEEKNTIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
++ V + GA + I+ +K LIP+ + VLEV+L+ + I + GL++
Sbjct: 119 KISEVMSPGANDVWVIERPKKKDLLIPYIEEVVLEVDLENQMVTI-HMMEGLDD 171
>gi|238785843|ref|ZP_04629812.1| Ribosome maturation factor rimM [Yersinia bercovieri ATCC 43970]
gi|238713256|gb|EEQ05299.1| Ribosome maturation factor rimM [Yersinia bercovieri ATCC 43970]
Length = 186
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 14 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIIVDSKQLPT--LEEDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKSVDLTAQRVEVDWDPG 185
>gi|70728477|ref|YP_258226.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens Pf-5]
gi|109893033|sp|Q4KHQ7|RIMM_PSEF5 RecName: Full=Ribosome maturation factor rimM
gi|68342776|gb|AAY90382.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Pf-5]
Length = 178
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ +K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVFSFTDPIKNLLDYKTWTLKREGSVKQVELVSGRGNDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D+ A L ++ R F EL + E++ L+ ++ D G+ G++
Sbjct: 69 VAKLKGLDDREEARLLAGYEICVPRSLFP--ELTDGEYYWYQLQGLKVIDGLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K + L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|238791384|ref|ZP_04635023.1| Ribosome maturation factor rimM [Yersinia intermedia ATCC 29909]
gi|238729517|gb|EEQ21032.1| Ribosome maturation factor rimM [Yersinia intermedia ATCC 29909]
Length = 186
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 14 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIIVDSKQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 185
>gi|312194951|ref|YP_004015012.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
gi|311226287|gb|ADP79142.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
Length = 178
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 9/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + +++ IG HG+ G+V ++ + P + S +L I + R
Sbjct: 1 MGEAIVVGRIGKPHGVRGDVTVEVRTDLPDRRFAPGSKLDRSGGGPDLVIEDSRWHSGRL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDF-----KDEELEEDEFFN-TDLEEMETFDRQGK 114
+ F G+ + A LR + L DE E EF+ DL + G
Sbjct: 61 LVRFEGVADRTGAESLRGVVLTIDADLAGDAVDPDEADEGGEFWWDRDLVGLRAVTPDGS 120
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V V + AG +L I L+PF + V V+ +++D L+
Sbjct: 121 PLGEVTDVVHTAAGELLAIGTPTGGEHLVPFVREIVPTVDRAGGLLVVDAPPGLLD 176
>gi|240948145|ref|ZP_04752548.1| 16S rRNA-processing protein [Actinobacillus minor NM305]
gi|240297498|gb|EER48005.1| 16S rRNA-processing protein [Actinobacillus minor NM305]
Length = 175
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEEAESIFDYQPWFLKIKGQWQPVELENWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ SA L + ++ F ELEE +++ DL + + +G G V +
Sbjct: 68 KGTEDRESAQLLTNAEIGVDLAVFP--ELEEGDYYWHDLIGCQVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L IK ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVIKANSKDAFGKQERLIPFLYEQVVKRVDLTTKTITVDWDAG 174
>gi|153938104|ref|YP_001391744.1| 16S rRNA-processing protein RimM [Clostridium botulinum F str.
Langeland]
gi|170756645|ref|YP_001781989.1| 16S rRNA-processing protein RimM [Clostridium botulinum B1 str.
Okra]
gi|166226435|sp|A7GG34|RIMM_CLOBL RecName: Full=Ribosome maturation factor rimM
gi|152934000|gb|ABS39498.1| 16S rRNA processing protein RimM [Clostridium botulinum F str.
Langeland]
gi|169121857|gb|ACA45693.1| 16S rRNA processing protein RimM [Clostridium botulinum B1 str.
Okra]
gi|295319769|gb|ADG00147.1| 16S rRNA processing protein RimM [Clostridium botulinum F str.
230613]
Length = 164
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D +IL + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEGRKILSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D G+ GQ+ V
Sbjct: 61 IEGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLIECRVIDENGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K + L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVK--GKSEVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|218887969|ref|YP_002437290.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758923|gb|ACL09822.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 210
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 11/192 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D + + +G HGL GEV +D +A +P DL R L+ R + + R R
Sbjct: 4 DSFIEIGLVGRPHGLRGEVGVDFWAESP-DLLRGTLWLRPGRGAPRPHTVAAVRRHQGRP 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ F GI + +A LR + + + E EDE + +L + G G +
Sbjct: 63 LVLFEGIADRSAAETLRGMHVLVPKDRLP--EPAEDEVYLHELLGLRVLLHDTGAALGTL 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN---NTTMKN 176
V G + I+ K L+P + V ++L ++ I P + K+
Sbjct: 121 DDVQMPGGQEVWSIRTADGKEVLLPAVEEFVASIDLDAREVRITPPPGLMELYLEAPEKS 180
Query: 177 PQYDCPLDSAGK 188
D+ G
Sbjct: 181 AARKPDADATGP 192
>gi|154483573|ref|ZP_02026021.1| hypothetical protein EUBVEN_01277 [Eubacterium ventriosum ATCC
27560]
gi|149735483|gb|EDM51369.1| hypothetical protein EUBVEN_01277 [Eubacterium ventriosum ATCC
27560]
Length = 169
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRKNKR 59
+++L + I THG+ GEV + +N DL +L + + L + +
Sbjct: 1 MEELFRVGVISNTHGIRGEVKVYPTTDNVRRFDDLKEVILDTGKEQLNLHVTSVKYFKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F DNI+ + + L R++ LEE E++ D+ + + K G +
Sbjct: 61 VILKFKEFDNINDIIPYKGMDLLVTREN--AIPLEEGEYYIADIIGSKVITDEDKILGTL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + +K K L+P + +L+ +++ + + + L+
Sbjct: 119 TDVLQTGANDVYVVKTKDGKEVLLPSIEECILDRDIENKIVKVHIMKGLLD 169
>gi|323141929|ref|ZP_08076789.1| 16S rRNA processing protein RimM [Phascolarctobacterium sp. YIT
12067]
gi|322413596|gb|EFY04455.1| 16S rRNA processing protein RimM [Phascolarctobacterium sp. YIT
12067]
Length = 167
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND-NRELRILKMYRKNKRFIA 62
++ +++ I HG+ G++ I + P R+L + + +
Sbjct: 1 MENQIVIGKIVAPHGVRGDIRILPLTDKPEQFLDLDYLLLPDGRKLTVKAARFHKRMVLV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T + I +++ + LR +++ +D ELEE F+ DL + +D QG+ G
Sbjct: 61 TTAEIKSMNESELLRGMEVSINAEDLP--ELEEGRFYVADLIGLPVYDEQGEQIGTFKDA 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + I +K +L+P K V E+NL E +I+++
Sbjct: 119 LSTGSNDVYVIAVPGQKDYLLPALKKYVKEINLAEKRIVVELPEW 163
>gi|262273653|ref|ZP_06051466.1| 16S rRNA processing protein RimM [Grimontia hollisae CIP 101886]
gi|262222068|gb|EEY73380.1| 16S rRNA processing protein RimM [Grimontia hollisae CIP 101886]
Length = 183
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + +K V++ +G ++G+ G + + SY N ++ Y + + +E + R
Sbjct: 9 MSEQEK-VVVGKLGASYGIRGWLKVFSYTENAENIFSYSPWFIKVRGEWQEFSLEDWKRH 67
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N+ ++ G+D A L + ++ + EL ++EF+ +L ME +G
Sbjct: 68 NQGYVGKLKGLDQREDAQALTNAEIAINAEVLP--ELSDEEFYWRELYGMEVATTKGYNL 125
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
G+V + G+ +L ++ +K LIPF + ++ +I +D
Sbjct: 126 GKVTDILETGSNDVLVVQANPKDAFGQKERLIPFLDGQVIKSIDRSAQRIEVDWDPG 182
>gi|238798964|ref|ZP_04642427.1| Ribosome maturation factor rimM [Yersinia mollaretii ATCC 43969]
gi|238717193|gb|EEQ09046.1| Ribosome maturation factor rimM [Yersinia mollaretii ATCC 43969]
Length = 186
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 14 PEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIIVDSKQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 185
>gi|254362950|ref|ZP_04979016.1| 16S rRNA processing protein RimM [Mannheimia haemolytica PHL213]
gi|153094598|gb|EDN75412.1| 16S rRNA processing protein RimM [Mannheimia haemolytica PHL213]
Length = 175
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + +++ + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKIKGQWQQVELESWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ +A L + ++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGTEDREAAQLLTNAEIGVDLSVFP--ELEEGDYYWHDLIGCSVVNLEGYTMGTVAEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++N ++ LIPF + V V+L I ++ A
Sbjct: 126 TGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRVDLATKTITVEWDAG 174
>gi|48474795|sp|Q7N799|RIMM_PHOLL RecName: Full=Ribosome maturation factor rimM
gi|36784652|emb|CAE13552.1| 16S rRNA processing protein [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 185
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 21/186 (11%)
Query: 1 MVKLDK---------LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRE 47
MV + K +++ +G+T+G+ G + + S + D+ Y + + +
Sbjct: 1 MVTMSKQTCIELPVNPIVLGKLGSTYGIRGWLRVFSSTEHAEDIFAYQPWFIQRAGRWQH 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + N+ I GID++ +A+ L + ++ + EL+ +++ DL +
Sbjct: 61 IELEAWKHHNQDMIIKIKGIDDLDAANSLTNCEIIVDSEQLP--ELDTGDYYWKDLIGCQ 118
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKIL 161
G G V + G+ ++ +K ++ K LIPF + +V+L I
Sbjct: 119 VISTAGYNLGTVNDMMETGSNDVMVVKANLKDAFGVKERLIPFLDGQVIKKVDLATKTIE 178
Query: 162 IDPIAA 167
+D
Sbjct: 179 VDWDPG 184
>gi|322515607|ref|ZP_08068586.1| 16S rRNA processing protein RimM [Actinobacillus ureae ATCC 25976]
gi|322118317|gb|EFX90592.1| 16S rRNA processing protein RimM [Actinobacillus ureae ATCC 25976]
Length = 175
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G D+ SA L + ++ F ELEE +++ DL + + +G G V +
Sbjct: 68 KGTDDRESAQLLTNAEIGVDLSVFP--ELEEGDYYWHDLIGCQAVNLEGYTMGVVTELME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|253573495|ref|ZP_04850838.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847023|gb|EES75028.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
Length = 172
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 9/172 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKN 57
D L+ + I THG+ GE+ + + P L + + E+ +
Sbjct: 3 DSLLTVGKIVNTHGIRGELRVLLQTDFPEVRFAPKSRLLIVHPETGERLEVTVQSARPYK 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +I F NI+ + L + + EL E+E++ ++ +G+ G
Sbjct: 63 QMYIVKFVEFSNINDVERFKGRDLKVSKAE--SVELPENEYYFHEIIGCRVVSDEGEELG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
++ + GA + K K L+P VL+VN++E I + + L
Sbjct: 121 EIVEILRPGANDVWVAKLPNGKQLLLPVIDDVVLDVNVKEKIITVHMMEGLL 172
>gi|161579573|ref|NP_928569.2| 16S rRNA-processing protein [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 182
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+T+G+ G + + S + D+ Y + + + + + N+ I
Sbjct: 12 NPIVLGKLGSTYGIRGWLRVFSSTEHAEDIFAYQPWFIQRAGRWQHIELEAWKHHNQDMI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID++ +A+ L + ++ + EL+ +++ DL + G G V
Sbjct: 72 IKIKGIDDLDAANSLTNCEIIVDSEQLP--ELDTGDYYWKDLIGCQVISTAGYNLGTVND 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K LIPF + +V+L I +D
Sbjct: 130 MMETGSNDVMVVKANLKDAFGVKERLIPFLDGQVIKKVDLATKTIEVDWDPG 181
>gi|186682347|ref|YP_001865543.1| 16S rRNA-processing protein RimM [Nostoc punctiforme PCC 73102]
gi|209573584|sp|B2J3X9|RIMM_NOSP7 RecName: Full=Ribosome maturation factor rimM
gi|186464799|gb|ACC80600.1| 16S rRNA processing protein RimM [Nostoc punctiforme PCC 73102]
Length = 235
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLY--SNDNRELRILKMYR 55
LD + + I + GL+GE+ + ++ P R++L+ + + +++L
Sbjct: 51 PNLDNWLEIGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLHLDGTEPQPIQLLTGRY 110
Query: 56 --KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
++ +G++N A LR KL D +L EDE+ DL +E F +
Sbjct: 111 ISNKNLYVIKLAGVENCDQAEALRGCKLMVPASDRP--QLAEDEYHVLDLIGLEVFMQAS 168
Query: 113 GKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+ G V + G +LE+K + +KT LIPF + V+L+ N+I I P
Sbjct: 169 GELVGTVVDIIPAG-NDLLEVKLHPSFTTDKKQKTVLIPFVEAIAPVVDLKSNRIEITPP 227
Query: 166 AAGLN 170
L
Sbjct: 228 PGLLE 232
>gi|169342654|ref|ZP_02863696.1| 16S rRNA processing protein RimM [Clostridium perfringens C str.
JGS1495]
gi|169299160|gb|EDS81230.1| 16S rRNA processing protein RimM [Clostridium perfringens C str.
JGS1495]
Length = 165
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ L+++ I THGL GE+ + + + +++++ + + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKIKVEGVKYFKDKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++ V
Sbjct: 61 LQGINSIEEAEKLKRTYLEIERED--AIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + ++ +K L+P K VL++N+ E I I P
Sbjct: 119 QTPSNDVYWVQ--GKKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|110803164|ref|YP_698997.1| 16S rRNA-processing protein RimM [Clostridium perfringens SM101]
gi|122956637|sp|Q0SSB0|RIMM_CLOPS RecName: Full=Ribosome maturation factor rimM
gi|110683665|gb|ABG87035.1| 16S rRNA processing protein RimM [Clostridium perfringens SM101]
Length = 165
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ L+++ I THGL GE+ + + + +++++ + + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGQKIKVEGVKYFKDKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++ V
Sbjct: 61 LQGINSIEEAEKLKRTYLEIERED--AIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + ++ +K L+P K VL++N+ E I I P
Sbjct: 119 QTPSNDVYWVQ--GKKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|220912967|ref|YP_002488276.1| 16S rRNA-processing protein RimM [Arthrobacter chlorophenolicus A6]
gi|219859845|gb|ACL40187.1| 16S rRNA processing protein RimM [Arthrobacter chlorophenolicus A6]
Length = 181
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 8/182 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + + P D +V+ + L + +
Sbjct: 3 LQVARIGKPHGIRGEVTVQVMTDAPGDRFVPGVEFVVEPAQSGPLTVSSARWNKDILLLA 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I++ + A LR KL+ + + +E +ED ++ +L +E G+V +
Sbjct: 63 FEEIEDRNQAETLRGAKLFIETAEL--DEDDEDGWYEHELVGLEAR-VGSTVVGKVTALN 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
A +L + + LIPF + V EVN+ E IL+ P N+ P
Sbjct: 120 TAPAQDLLMVTTPDGEEILIPFVEQIVPEVNVGEGYILLTPPDGLFEVNSGEAAPSEPEG 179
Query: 183 LD 184
D
Sbjct: 180 TD 181
>gi|260582422|ref|ZP_05850214.1| 16S rRNA processing protein RimM [Haemophilus influenzae NT127]
gi|260094573|gb|EEW78469.1| 16S rRNA processing protein RimM [Haemophilus influenzae NT127]
Length = 178
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
M +++ + ++ +G+T+G+ G + I S + Y + + + + +
Sbjct: 1 MKNMEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I G+D+ +A L ++++ F ELEE +++ DL + +G
Sbjct: 61 YHNHEIIVKLKGVDDREAAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 119 TMGTVTEIMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 177
>gi|238019721|ref|ZP_04600147.1| hypothetical protein VEIDISOL_01596 [Veillonella dispar ATCC 17748]
gi|313894616|ref|ZP_07828179.1| 16S rRNA processing protein RimM [Veillonella sp. oral taxon 158
str. F0412]
gi|237863762|gb|EEP65052.1| hypothetical protein VEIDISOL_01596 [Veillonella dispar ATCC 17748]
gi|313440806|gb|EFR59235.1| 16S rRNA processing protein RimM [Veillonella sp. oral taxon 158
str. F0412]
Length = 165
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 2/167 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K + + + I HG+ G++ I + P D +E + + +
Sbjct: 1 MKHNDFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDGKEYHVASARFHKQFVL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F I + ++A + +R+D EL E ++ D+ +E D +G G V
Sbjct: 61 ASFKEIPDRNTAELFSKKAIQVRREDL--VELPEGRYYIFDIIGLEVQDTKGNVLGTVTD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + E L + V +++++ +++DP
Sbjct: 119 VLQPGANDVYVVSKDGEPDQLFAAIEEVVKDIDVENKLMIVDPPEWI 165
>gi|145296016|ref|YP_001138837.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum R]
gi|166226437|sp|A4QFB9|RIMM_CORGB RecName: Full=Ribosome maturation factor rimM
gi|140845936|dbj|BAF54935.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 171
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE--LRILKMYRK 56
+ ++ + + + +HG+ GEV ++ ++P + + +E L I
Sbjct: 1 MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + F+ + + +A LR + +A + +E +ED F++ +LE + +G+
Sbjct: 61 QGRLLVKFAEVPDRTAADSLRGTRFFAAPLE---DEDDEDGFYDHELESLRVI-HEGEDI 116
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V GV + AG ILE++ T K LIPF V EV+L+E I P L+
Sbjct: 117 GEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLD 170
>gi|222528964|ref|YP_002572846.1| 16S rRNA-processing protein RimM [Caldicellulosiruptor bescii DSM
6725]
gi|312127970|ref|YP_003992844.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
hydrothermalis 108]
gi|254797740|sp|B9MQW9|RIMM_ANATD RecName: Full=Ribosome maturation factor rimM
gi|222455811|gb|ACM60073.1| 16S rRNA processing protein RimM [Caldicellulosiruptor bescii DSM
6725]
gi|311777989|gb|ADQ07475.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
hydrothermalis 108]
Length = 169
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + YVL ++ + +L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISSIDEAQKLKNRYIVIERERAK--KLPKDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKEIVKEVNIEEGYMKIKVVEGLLD 169
>gi|18310692|ref|NP_562626.1| 16S rRNA-processing protein [Clostridium perfringens str. 13]
gi|110800602|ref|YP_696397.1| 16S rRNA-processing protein RimM [Clostridium perfringens ATCC
13124]
gi|168207939|ref|ZP_02633944.1| 16S rRNA processing protein RimM [Clostridium perfringens E str.
JGS1987]
gi|168210657|ref|ZP_02636282.1| 16S rRNA processing protein RimM [Clostridium perfringens B str.
ATCC 3626]
gi|168216997|ref|ZP_02642622.1| 16S rRNA processing protein RimM [Clostridium perfringens NCTC
8239]
gi|182625872|ref|ZP_02953638.1| 16S rRNA processing protein RimM [Clostridium perfringens D str.
JGS1721]
gi|21362851|sp|Q8XJP6|RIMM_CLOPE RecName: Full=Ribosome maturation factor rimM
gi|122958814|sp|Q0TPP3|RIMM_CLOP1 RecName: Full=Ribosome maturation factor rimM
gi|18145373|dbj|BAB81416.1| probable 16S rRNA processing protein [Clostridium perfringens str.
13]
gi|110675249|gb|ABG84236.1| 16S rRNA processing protein RimM [Clostridium perfringens ATCC
13124]
gi|170660750|gb|EDT13433.1| 16S rRNA processing protein RimM [Clostridium perfringens E str.
JGS1987]
gi|170711249|gb|EDT23431.1| 16S rRNA processing protein RimM [Clostridium perfringens B str.
ATCC 3626]
gi|177908906|gb|EDT71398.1| 16S rRNA processing protein RimM [Clostridium perfringens D str.
JGS1721]
gi|182380889|gb|EDT78368.1| 16S rRNA processing protein RimM [Clostridium perfringens NCTC
8239]
Length = 165
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ L+++ I THGL GE+ + + + +++++ + + I
Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKGKKVKVEGVKYFKDKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GI++I A +L+ L +R+D ELEEDE+F DL D +G +G++ V
Sbjct: 61 LEGINSIEEAEKLKRTYLEIERED--AIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ + ++ +K L+P K VL++N+ E I I P
Sbjct: 119 QTPSNDVYWVQ--GKKEVLVPVLKDIVLDINMDEKLITIRP 157
>gi|300172997|ref|YP_003772163.1| 16S rRNA processing protein RimM [Leuconostoc gasicomitatum LMG
18811]
gi|299887376|emb|CBL91344.1| 16S rRNA processing protein RimM [Leuconostoc gasicomitatum LMG
18811]
Length = 173
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 7/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNR----ELRILKMYR 55
M + + TI THG+ GEV I + + D + D + +++
Sbjct: 1 MTNTENYFKVGTIVNTHGIRGEVKIMAITDFAADRFKKGAELQIDTKQGFVPVKVQDSRM 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F G+ NI+ + + +Y E L +DE++ ++ D +
Sbjct: 61 HKNMWLVLFEGVTNINEIEKYKTHDIYV--IGGAREALGDDEYYYNEIIGCRVIDLEDND 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + GA + + + LIP V V++ + ID + L+
Sbjct: 119 IGVISEIMETGANDVWVVSRDGQSDALIPMIDDVVKNVDVAGKLVTIDALEGLLD 173
>gi|311739730|ref|ZP_07713565.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305546|gb|EFQ81614.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 165
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE---LRILKMYRKNKRFIA 62
+++ + +HG+ GEV +++ + P VL+ ++ L I + R +
Sbjct: 3 LMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHTLTIKAVRSHKGRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF I + A LR K +A D ++D F++ +LE + +G+ G+V V
Sbjct: 63 TFEEIKDRTVADSLRGTKFFAAPLDS-----DDDGFYDHELEGLRVLL-EGEEIGEVTSV 116
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ +LEIK K LIPF V EVNL+ IDP L+
Sbjct: 117 IHGGSQDLLEIKLDNNKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLD 164
>gi|53802419|ref|YP_112924.1| 16S rRNA processing protein RimM [Methylococcus capsulatus str.
Bath]
gi|59798629|sp|Q60BS2|RIMM_METCA RecName: Full=Ribosome maturation factor rimM
gi|53756180|gb|AAU90471.1| 16S rRNA processing protein RimM [Methylococcus capsulatus str.
Bath]
Length = 172
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D+ V++ + G+ G V S+ + P++L Y ++ + R +L+
Sbjct: 8 DRSVVVGRVSGAFGVRGWVKAVSFTDPPVNLVGYRPWTLRRGDAERRADVLEGREHGNAV 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I G+D A L+ ++ +R E++ DL ++ + G+V
Sbjct: 68 IVRLQGVDTREQAEALKGFEVTVRRSQLPPP--APGEYYRVDLVGLKVVNLGETVLGEVV 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
V GA +L ++ ++ L+PF + V VNL+E++I++D
Sbjct: 126 DVMETGANDVLVVQ--GDRERLLPFVQGVFVKSVNLEESRIVVDWDPG 171
>gi|148265781|ref|YP_001232487.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
gi|209573558|sp|A5G7Z6|RIMM_GEOUR RecName: Full=Ribosome maturation factor rimM
gi|146399281|gb|ABQ27914.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
Length = 173
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRI---LKMYR 55
M ++ VL+ + THG+ G++ I ++ + L R ++ E+ I
Sbjct: 1 MSSGNETVLIGKVSATHGVRGQLRITPFSGDVDSLLTLRSIMVKKPGGEMEIFAVAASKA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K+ I T DNI+ L +LYA R+ EL EDE++ DL ++ +G+
Sbjct: 61 HGKKVIITLKAFDNINQVLHLVGRELYALREQLP--ELPEDEYYWCDLLGLQVVTEEGES 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + G+ + ++ + LIP VL+V+ ++ + L+
Sbjct: 119 LGELVDIIVTGSNDVYVVQG-SGREILIPALADVVLDVDSDAKRMTVSLPEGLLD 172
>gi|269837895|ref|YP_003320123.1| 16S rRNA processing protein RimM [Sphaerobacter thermophilus DSM
20745]
gi|269787158|gb|ACZ39301.1| 16S rRNA processing protein RimM [Sphaerobacter thermophilus DSM
20745]
Length = 178
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+ + I G++GEV ++ + + P + V ++ + R+L I
Sbjct: 15 LAIGVIVAPQGISGEVRMNIWTHFPERIPDLTEVYLDDEAQPRRLLTARLHKGVAILRIE 74
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G++ A +LR + L EDE+++ L + D G G + +
Sbjct: 75 GVETRDEAEDLRGTVVRIGPDQ--AAPLGEDEYYHFQLIGLTVVDEAGNPLGTLTDILET 132
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
GA + +++ K L+P + VL+++L+ ++ + P+
Sbjct: 133 GANDVYIVRDEAGKETLLPALRDVVLDIDLECGRMTVRPL 172
>gi|152980656|ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille]
gi|209573563|sp|A6SVI5|RIMM_JANMA RecName: Full=Ribosome maturation factor rimM
gi|151280733|gb|ABR89143.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille]
Length = 179
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKN 57
M + LVL+ I +GLNG V + Y+ + L + L + ++ +++
Sbjct: 1 MKVPEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKPEFHDVEMMQSKIHT 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A G+ +A L+ + R F L ++EF+ DL +E + QG++ G
Sbjct: 61 GDVVAKLMGVAGRDAAEALKGATVQIPRSHFPA--LSDNEFYWVDLIGLEVENLQGEHLG 118
Query: 118 QVCGVYNFGAGSILEIKNT----------MEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
QV + + GA IL + + LIPF + V+ V+ KI +D
Sbjct: 119 QVSDMMDNGAHPILRVAVPQAAETTDPKAAPQELLIPFVEQFVITVDRTAKKITVD---W 175
Query: 168 GLN 170
GL+
Sbjct: 176 GLD 178
>gi|54310150|ref|YP_131170.1| 16S rRNA-processing protein RimM [Photobacterium profundum SS9]
gi|59798725|sp|Q6LMV8|RIMM_PHOPR RecName: Full=Ribosome maturation factor rimM
gi|46914589|emb|CAG21368.1| putative 16S rRNA processing protein RimM [Photobacterium profundum
SS9]
Length = 177
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
LV++ +G T+G+ G + + SY + Y + + + ++I + +
Sbjct: 6 QDLVVVGKLGATYGIKGWLKVFSYTEQSESIFAYQPWLIKVKGEWKPIQIESWKKHGQGM 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A + ++ L +EF+ +L M +G G+V
Sbjct: 66 VAKLEGLDIREDAQIFTNAEVAVHADQLPA--LSGEEFYWRELYGMSVVTTEGYDLGKVT 123
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + ++ +I +D
Sbjct: 124 DILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKSIDRTAQRIEVDWDPG 176
>gi|255020745|ref|ZP_05292804.1| 16S rRNA processing protein RimM [Acidithiobacillus caldus ATCC
51756]
gi|254969807|gb|EET27310.1| 16S rRNA processing protein RimM [Acidithiobacillus caldus ATCC
51756]
Length = 169
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Query: 1 MVKLDK-LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKN 57
M + + ++ I +G+ G V + S+ + + Y L+ + R +R+L+ +
Sbjct: 1 MPQPEDAWTVLGRISGVYGVRGWVKVFSFTQSREGILDYPLWHLGSARRPVRVLEGRLQA 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A GID+ +A+ L + L + EF+ L+ + + + G
Sbjct: 61 GGVVAHLEGIDDRDTAAALVGQDITVPVSALPA--LPDGEFYWFQLQGLAVVNLDDERLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ GA +L + + LIP+ A V+L++ +I +D
Sbjct: 119 TVAGLLETGANDVLVVHDAQGTEILIPWDAHAAAGVDLEQGRITVD 164
>gi|253578960|ref|ZP_04856231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849903|gb|EES77862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 167
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN-NPIDLNRYVLYSN--DNRELRILKMYRKNKRF 60
++ L+ + I TTHG+ GEV + + + YVL + R+L I +
Sbjct: 1 MEDLLKVGVITTTHGIRGEVKVYPTTDADRFLDLEYVLLDTGREKRKLEIENVKYFKNLV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GIDNI+ + +L+ R++ ++ E +E ++ DL M+ G +G +
Sbjct: 61 ILKFRGIDNINDIEMYKKRELWIPREEAQELEEDE--YYIADLIGMDVVLEDGSKFGTLK 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + +++ + L+P + +L+V++++N + I + +
Sbjct: 119 DVMETGANDVYVVEDAKGEEILLPAIRECILDVDVEKNVMTIHLMKGLI 167
>gi|146329006|ref|YP_001209896.1| 16S rRNA processing protein RimM [Dichelobacter nodosus VCS1703A]
gi|166985943|sp|A5EXZ2|RIMM_DICNV RecName: Full=Ribosome maturation factor rimM
gi|146232476|gb|ABQ13454.1| 16S rRNA processing protein RimM [Dichelobacter nodosus VCS1703A]
Length = 175
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRK 56
M L+ + I HG+ G V I S + Y ++ + L++L R
Sbjct: 1 MKAQPTLIALGRIIGVHGVRGWVKIHSECRPREAIFNYSVFQATRHHHAQTLKLLDARRS 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K IA F+ I + +A +L L R D +L+ +++ TD+ + +R G++
Sbjct: 61 GKSLIALFADICDRDAALQLNGFTLNVTRADLP--QLKNGQYYWTDVLGLTVINRSGEHL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILIDPIAAGLNNT 172
G+VC ++ GA +L I N + +LIPF + ++ + + +D A ++
Sbjct: 119 GKVCDIFETGANDVLVI-NKDGQEYLIPFISERYIDRIDFENKYLYVDWQMAWTDDA 174
>gi|78356144|ref|YP_387593.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|109893013|sp|Q313J8|RIMM_DESDG RecName: Full=Ribosome maturation factor rimM
gi|78218549|gb|ABB37898.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 176
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 7/172 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE---LRILKMYRKNKRF 60
+DK V + I HGL GEV + SYA++P + + R+ R +
Sbjct: 1 MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTE 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQV 119
+ GID+ ++A +LR K+ + ELE+DE + D+ D G G +
Sbjct: 61 LLLLEGIDDRNAAEKLRQHKVLIPHAELP--ELEDDEVYIEDILGFTVVLDEDGSTLGTL 118
Query: 120 CGVY-NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ EI K L P + V E+++ I I P L
Sbjct: 119 TAFSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETIRITPPPGLLE 170
>gi|291087694|ref|ZP_06347205.2| 16S rRNA processing protein RimM [Clostridium sp. M62/1]
gi|291074191|gb|EFE11555.1| 16S rRNA processing protein RimM [Clostridium sp. M62/1]
Length = 170
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRE---LRILKMYRKNKR 59
+++ + + I + HG+ GEV + ++ + ++ + +E L + ++
Sbjct: 1 MEQFLRVGVITSPHGVRGEVKVFPTTDDINRFKKLKEVFLDTGKEKILLHVEQVKFFKGM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F +I+ R L R K +L +E F DL + +G+ +G V
Sbjct: 61 AILKFKEFGSINEVEPFRKKDLLVSRD--KAVKLAPNENFIVDLIGLTVVTDEGEEFGTV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A + I+ K +L P K +L+V+L+ ++L+ + L+
Sbjct: 119 KDILQTAANDVYVIEGKDHKEYLFPSIKECILDVDLEAGRVLVHIMDGLLD 169
>gi|261492746|ref|ZP_05989294.1| 16S rRNA processing protein RimM [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261495640|ref|ZP_05992086.1| 16S rRNA processing protein RimM [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261308747|gb|EEY10004.1| 16S rRNA processing protein RimM [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261311599|gb|EEY12754.1| 16S rRNA processing protein RimM [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 175
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEQSESIFDYQPWFLKIKGNWQPVELESWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ +A L + ++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGTEDREAAQLLTNAEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I ++ A
Sbjct: 126 TGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKAITVEWDAG 174
>gi|251793944|ref|YP_003008676.1| 16S rRNA-processing protein RimM [Aggregatibacter aphrophilus
NJ8700]
gi|247535343|gb|ACS98589.1| 16S rRNA processing protein RimM [Aggregatibacter aphrophilus
NJ8700]
Length = 175
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFS 65
+ +G+T+G+ G + I S + Y + + + N I
Sbjct: 9 VGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGQWQPTELENWRHHNHELIVKLK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D+ +A L ++++ F +LEE +++ DL + +G G V +
Sbjct: 69 GVDDREAAQILANVEIGVDLSVFP--QLEEGDYYWHDLIGCAVVNLEGYAMGTVTEMMET 126
Query: 126 GAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 127 GSNDVLVVKANVKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|300718046|ref|YP_003742849.1| 16S rRNA-processing protein [Erwinia billingiae Eb661]
gi|299063882|emb|CAX61002.1| 16S rRNA-processing protein [Erwinia billingiae Eb661]
Length = 185
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+ +G+ G + + S + + Y + + + + + R N+ I
Sbjct: 15 NPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A L + ++ + EL+ +++ DL + +G G+V
Sbjct: 75 IKVKGIDDRDTAGLLTNCEIVVDSEQLP--ELDGGDYYWKDLIGCQVVTTEGYELGKVTE 132
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L ++ K LIPF + V+L I +D
Sbjct: 133 LMETGSNDVLVVQANLKDAFGAKERLIPFLDGQVIKNVDLTTGTIEVDWDPG 184
>gi|224476353|ref|YP_002633959.1| 16S rRNA-processing protein RimM [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420960|emb|CAL27774.1| 16S rRNA processing protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 158
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 15 TTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFIATFSGIDN 69
THG+ GEV + S + + + +D +E L + + TF GI N
Sbjct: 2 NTHGIKGEVRVKSNSDFTDVRFQPGEILTVKHDGKETELTVASYRMHKGFHMLTFEGIHN 61
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
I+ + L +R D D EL+E EF+ +D+ F+ G+V ++ GA
Sbjct: 62 INDIEHFKGDVLTQER-DHADIELDEHEFYYSDIIGCTVFEGD-TPIGRVKEIFETGAND 119
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +K +K ++IP+ V EV+++ +I I P+ L+
Sbjct: 120 VWVVK--GDKEYMIPYIADVVKEVDVEGRRIQITPLEGMLD 158
>gi|90414890|ref|ZP_01222855.1| 16S rRNA-processing protein [Photobacterium profundum 3TCK]
gi|90324004|gb|EAS40598.1| 16S rRNA-processing protein [Photobacterium profundum 3TCK]
Length = 177
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
LV++ +G T+G+ G + + SY + Y + + + ++I + +
Sbjct: 6 QDLVVVGKLGATYGIKGWLKVFSYTEQSESIFAYQPWLIKVKGEWKPIQIESWKKHGQGI 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+D A + ++ L +EF+ +L M +G G+V
Sbjct: 66 VAKLEGLDIREDAQIFTNAEVAVHADQLPA--LSGEEFYWRELYGMSVVTTEGYDLGKVT 123
Query: 121 GVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K +K LIPF + ++ +I +D
Sbjct: 124 DILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKSIDRTAQRIEVDWDPG 176
>gi|300024813|ref|YP_003757424.1| 16S rRNA processing protein RimM [Hyphomicrobium denitrificans ATCC
51888]
gi|299526634|gb|ADJ25103.1| 16S rRNA processing protein RimM [Hyphomicrobium denitrificans ATCC
51888]
Length = 185
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Query: 1 MVKLD--KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRK 56
M K + K +L+ I HG+ G++ + +Y P + Y ++ + + +
Sbjct: 1 MTKDEHSKRILLGEISGVHGIRGDILVRTYTATPDAIASYGPLTDATGTKTFSLKIVRVT 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K +A +GI + +A LR KL+ R+ E EF+++DL +
Sbjct: 61 DKGVVARIAGISDRTTAEALRGTKLFIAREKLP--ETSASEFYHSDLIGLNAVAEDNTPI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
G++ V NFGAG +LE++ + IPF V +V+L ++I + + T
Sbjct: 119 GKIVSVQNFGAGDLLELQPPEGASEFIPFEDQWVPKVDLSARTVVIRRPPSTGDETEDAE 178
Query: 177 PQYDCPL 183
Sbjct: 179 TDEPEQT 185
>gi|258646853|ref|ZP_05734322.1| 16S rRNA processing protein RimM [Dialister invisus DSM 15470]
gi|260404292|gb|EEW97839.1| 16S rRNA processing protein RimM [Dialister invisus DSM 15470]
Length = 168
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 4/169 (2%)
Query: 1 MVKLD--KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK 58
M ++ K + + I HG+ G++ + P + R +
Sbjct: 1 MNDMNSGKWITVGRIVAPHGVRGDLRVLPETERPAMFKKLKKLFLGGRTYDVRSSRPHKN 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+I +G+++ + A L + + +L E E++ L + G G
Sbjct: 61 VYIIHLAGVEDRNGAEPLVGTPVEIPVAELP--KLPEGEYYYFQLIGLTVVSDTGDTVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ + GA ++ +K K +P VL V +E + +
Sbjct: 119 LTEIIETGANNVYAVKTAEGKEIYLPAIPSCVLSVQPEEKTMTVHLPEW 167
>gi|303241506|ref|ZP_07328007.1| 16S rRNA processing protein RimM [Acetivibrio cellulolyticus CD2]
gi|302590924|gb|EFL60671.1| 16S rRNA processing protein RimM [Acetivibrio cellulolyticus CD2]
Length = 174
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKN 57
+ + + + THG+ GE+ + ++P N+ S + ++ +
Sbjct: 1 MLQYFEIGKVVNTHGVKGEIKVVPLTDDPNRFNKLKSAFIASEISENMQKYNFEGIKFHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ GID+ + A +L+D + R+D +L E FF DL E +D + G
Sbjct: 61 NFVLLKLKGIDDPNEAEKLKDKFIIIDRED--AVKLPEGSFFVCDLINCEVYDEKENKLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G+ + +++ +K L+P K V EV++++ KI+++ +++
Sbjct: 119 VLIDILQTGSNDVYVVRDENKKEILVPALKSVVKEVSIEDKKIIVELPQGLIDDE 173
>gi|260881183|ref|ZP_05893339.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
gi|260849730|gb|EEX69737.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
Length = 180
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 2/162 (1%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
V + +G HG++GE+ I + + L I + + F
Sbjct: 16 DRVTIGKVGAAHGIHGEMRIIPLTDFTERFADMKEVMVGDELLHIESCKYHKQFILLKFR 75
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
A L L R + LEE EF+ D+ + +D G G V V
Sbjct: 76 EYPVREDAMRLTGRLLTVDRSE--AVPLEEGEFYTFDIIGLTVYDETGNTLGTVENVLRT 133
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G+ + + + + LIP K V +++ ++++D
Sbjct: 134 GSNDVYQARRPDGRELLIPALKAVVKVIDVAGGRMVVDLPEE 175
>gi|197119791|ref|YP_002140218.1| 16S rRNA processing protein RimM [Geobacter bemidjiensis Bem]
gi|197089151|gb|ACH40422.1| 16S rRNA processing protein RimM [Geobacter bemidjiensis Bem]
Length = 172
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN---RELRILKMYRKNKR 59
K +L+ I THG+ G++ + +A + +++ V + ++ KR
Sbjct: 4 SKKLLIGKIQGTHGIKGQLRVIPFAGDASSISQLNEVFVKSPTAALEPFAVVSAKAHGKR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I T DNI+ L ++YA R EL +DEF+ +DL ++ G+ G++
Sbjct: 64 VILTLKPFDNINQVLHLVGREIYADRVSLP--ELPDDEFYWSDLLGLQVATSDGEELGEL 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ + +K LIP + VL +NL E ++ + L+
Sbjct: 122 VDIIETGSNDVYVVKKGAL-EVLIPALEDVVLSINLAEGRMTVSLPEGLLD 171
>gi|329297077|ref|ZP_08254413.1| 16S rRNA-processing protein RimM [Plautia stali symbiont]
Length = 182
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 12 NPIILGKMGAAYGIRGWLKVFSSTEHAESIFDYQPWFIQRAGQWQQVELEGWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A++L + ++ LEE +++ DL + + G G+V
Sbjct: 72 IKVKGIDDRDAAAQLTNCEITVDSTQLPA--LEEGDYYWKDLMGCKVVNLDGYEMGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILID 163
+ G+ +L +K ++ + LIPF + +V+L I +D
Sbjct: 130 LMETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKKVDLATGTIEVD 177
>gi|190573385|ref|YP_001971230.1| 16S rRNA-processing protein RimM [Stenotrophomonas maltophilia
K279a]
gi|229890156|sp|B2FUB4|RIMM_STRMK RecName: Full=Ribosome maturation factor rimM
gi|190011307|emb|CAQ44920.1| putative 16S rRNA-processing protein RimM [Stenotrophomonas
maltophilia K279a]
Length = 170
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M +++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKDIERRILLGRVVGAFGVRGEIKLESWTEPRSAIFRYQPWIVRSPSGVETTIEGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F G+++ + +R ++Y R + DE++ DLE ++ +G
Sbjct: 61 SGKHLVARFPGVEDRDTVEAMRGTEIYVARSALPPPK--PDEYYWVDLEGLDVKTTEGVA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
GQV +++ GA ++ ++ ++ +IPF V V+ + N +++D
Sbjct: 119 LGQVSHLFSTGANDVVVVR--GDRERMIPFVQPDFVKSVDFEANLVVVD 165
>gi|289675161|ref|ZP_06496051.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
FF5]
Length = 171
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+D+ A L ++ R F D L++ E++ LE ++ D+ G+ G++
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKI 126
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQEN 158
+ G+ ++ +K + L+P+T+ VL +++
Sbjct: 127 DHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAG 169
>gi|223042033|ref|ZP_03612214.1| 16S rRNA-processing protein rimM [Actinobacillus minor 202]
gi|223017192|gb|EEF15623.1| 16S rRNA-processing protein rimM [Actinobacillus minor 202]
Length = 175
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEEAESIFDYQPWFLKIKGQWQPVELENWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ SA L + ++ F LEE +++ DL + + +G G V +
Sbjct: 68 KGTEDRESAQLLTNAEIGVDLAVFPA--LEEGDYYWHDLIGCQVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L IK ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVIKANSKDAFGKQERLIPFLYEQVVKRVDLTTKTITVDWDAG 174
>gi|302872181|ref|YP_003840817.1| 16S rRNA processing protein RimM [Caldicellulosiruptor obsidiansis
OB47]
gi|302575040|gb|ADL42831.1| 16S rRNA processing protein RimM [Caldicellulosiruptor obsidiansis
OB47]
Length = 169
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + L N + +L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVFLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISSIDEAQKLKNRYIVIERERAK--KLPKDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++ + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEGGYMKIKVVEGLLD 169
>gi|146312730|ref|YP_001177804.1| 16S rRNA-processing protein RimM [Enterobacter sp. 638]
gi|172045968|sp|A4WDH3|RIMM_ENT38 RecName: Full=Ribosome maturation factor rimM
gi|145319606|gb|ABP61753.1| 16S rRNA processing protein RimM [Enterobacter sp. 638]
Length = 177
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+ +G+ G + + S + + Y + E+ + R N+ +
Sbjct: 8 EPIVLGKMGSCYGIRGWLRVFSSTEDAESIFDYQPWFIQKGGKWEEVELESWRRHNQDIV 67
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+++ +A+ L + ++ +D ++ DL + +G G+V
Sbjct: 68 IKLKGVEDRDAANLLTNCEIVVDSSQLPKL---DDGYYWKDLMGCQVVTTEGYELGKVID 124
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 125 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRTIEVDWDPG 176
>gi|183601833|ref|ZP_02963202.1| probable 16S rRNA-processing protein rimM [Bifidobacterium animalis
subsp. lactis HN019]
gi|241190324|ref|YP_002967718.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195730|ref|YP_002969285.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218718|gb|EDT89360.1| probable 16S rRNA-processing protein rimM [Bifidobacterium animalis
subsp. lactis HN019]
gi|240248716|gb|ACS45656.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250284|gb|ACS47223.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178045|gb|ADC85291.1| RimM [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793311|gb|ADG32846.1| 16S rRNA-processing protein rimM [Bifidobacterium animalis subsp.
lactis V9]
Length = 219
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 30/212 (14%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN-----RELRILKMYR 55
+ +L+ + IG GL GEV ++ Y ++P VLY+ ++ R +
Sbjct: 13 QPQELLRVCRIGKAQGLKGEVSVELYTDDPHARFAPGEVLYARESAADALRPYTVAAART 72
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-- 113
R+ F G+D+ ++A LR+ LY + +EL++DEF+ DL +E +
Sbjct: 73 FKNRWYVRFEGVDDRNAAEALRNTVLYGE-----PQELDDDEFYPKDLLGLEVYLESEVS 127
Query: 114 ---------------KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G+V V GA +L+I+ + FL+PF + V EVNL+E
Sbjct: 128 AANADDAPEGAEFEFTDLGKVVDVIE-GAQWLLKIRMPNREAFLLPFVEALVPEVNLEEG 186
Query: 159 KILIDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ +DP + + A S
Sbjct: 187 YLTVDPPGGLVPGIGEPDIADTADSVGAAPPS 218
>gi|332993913|gb|AEF03968.1| 16S rRNA-processing protein RimM [Alteromonas sp. SN2]
Length = 173
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-SNDNRELRILKMYRKNKR 59
M +V++ IG +G+ G V I+SY P + Y+ + + E +I + K
Sbjct: 1 MSLASDIVVVGKIGAPYGVKGWVKINSYTQTPEGIFEYLPWFLGEENEYQIDQWRTHGKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+DN A +++L + D L +D + +L M+ QG G V
Sbjct: 61 LVAKIVGVDNRDDAERIKNLDINISASQLPD--LGDDGIYWRELTGMKVVTTQGYDLGVV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
V+N GA ++ +K + K LIPF V EV+ + I +D
Sbjct: 119 KEVFNTGANDVVHVKANVGDAFGQKERLIPFVFDDVVQEVDREAKVIKVDWDPG 172
>gi|59798656|sp|Q65VG2|RIMM_MANSM RecName: Full=Ribosome maturation factor rimM
gi|52306548|gb|AAU37048.1| RimM protein [Mannheimia succiniciproducens MBEL55E]
Length = 178
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 1 MVKLDK-LVL-MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
M K+D+ + + +G+T+G+ G + I S N + Y + + + + +
Sbjct: 1 MNKMDRQRIETVGKLGSTYGIRGWLRIYSSTENAESIFDYQPWFLKIKDQWQAIELETWK 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I I++ +A L ++++ F LEE +F+ DL + + QG
Sbjct: 61 HHNHELIVKLKNINDRETAQTLANVEIGVDLSVFPA--LEEGDFYWHDLIGCQVVNLQGY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 119 AMGTVSEMMETGSNDVLVVRANAKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 177
>gi|292670613|ref|ZP_06604039.1| 16S rRNA processing protein RimM [Selenomonas noxia ATCC 43541]
gi|292647779|gb|EFF65751.1| 16S rRNA processing protein RimM [Selenomonas noxia ATCC 43541]
Length = 162
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 2/163 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
D+ +++ +G HG+ G + I + P + L I M + K +
Sbjct: 2 PDERIVIGRVGAPHGVRGALRIIPLTDFPERFASLHEVMAGDELLHIEHMKPQGKNILMR 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F A L L R L E E++ D+ + +D G G V V
Sbjct: 62 FREYAAREDAQRLTGRLLTVPRAQ--AAPLGEGEYYVFDIVGLAVYDEAGNELGIVENVL 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + ++ + L+P + VL+++L ++ +
Sbjct: 120 RTGSNDVYAVRTEDGRELLVPALRAVVLQIDLNAGRMTVRLPE 162
>gi|259047125|ref|ZP_05737526.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
gi|259036175|gb|EEW37430.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
Length = 171
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN--RELRILKMYRKN 57
+ + I T GL GEV + S + + ++ + + + R
Sbjct: 1 MTTFYKVGKIVNTQGLRGEVRVISTTDFAEERYKKGTELAIFKDGEFLTFVTVASHRRHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ TF G++ I + ++ L + ELE+DEF+ ++ +E +G+ G
Sbjct: 61 NFDLLTFEGMNRIEDVEKYKECLLKVAEEQL--TELEDDEFYYHEIIGLEIVTDEGEVLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+V + + G+ + +K +K LIPF + V +V+ +E K I + ++
Sbjct: 119 KVTEILSPGSNDVWVVKQKGKKELLIPFIEPVVYKVDKEEKKAYIHLLEGLID 171
>gi|242277677|ref|YP_002989806.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
gi|242120571|gb|ACS78267.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
Length = 185
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRF 60
+++++A + HGL GEV I+S+A++P + R + + R
Sbjct: 2 EMLVVAEVVKPHGLRGEVCIESHADSPFLFDEVPCLYLAKKGQKPRRFVVRSSRKHKGRV 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G+++ A LR +++ + D E +DE + +LE M G G +
Sbjct: 62 LLTFKGVEDRDQAENLRGMEILVREADLP--ESGDDEVYMYELEGMSVELEDGTVVGTIS 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
I + K L P + VL V+L K++++P L+
Sbjct: 120 NFILAPGQETWVISSAEGKEILFPAVEEFVLSVDLDAEKVVVEPPEGLLD 169
>gi|194364932|ref|YP_002027542.1| 16S rRNA-processing protein RimM [Stenotrophomonas maltophilia
R551-3]
gi|238693461|sp|B4SPH2|RIMM_STRM5 RecName: Full=Ribosome maturation factor rimM
gi|194347736|gb|ACF50859.1| 16S rRNA processing protein RimM [Stenotrophomonas maltophilia
R551-3]
Length = 170
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + + L +
Sbjct: 1 MKDNERRILLGRIVGAFGVRGEIKLESWTEPRSAIFRYQPWILRSPNGQESTLEGARGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F GI++ + + ++Y R DE++ DLE ++ +G
Sbjct: 61 SGKHLVARFPGIEDRDTVEAMHGTEVYVARSALPPP--NADEYYWVDLEGLDVKTTEGVA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
GQV +++ GA ++ ++ ++ +IPF V V+ + N +++D
Sbjct: 119 LGQVSHLFSTGANDVVVVR--GDRERMIPFVLPEFVKSVDFEANLVVVD 165
>gi|260580915|ref|ZP_05848739.1| 16S rRNA processing protein RimM [Haemophilus influenzae RdAW]
gi|1176008|sp|P44568|RIMM_HAEIN RecName: Full=Ribosome maturation factor rimM
gi|1573163|gb|AAC21872.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092404|gb|EEW76343.1| 16S rRNA processing protein RimM [Haemophilus influenzae RdAW]
Length = 178
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
M +++ + ++ +G+T+G+ G + I S + Y + + + + +
Sbjct: 1 MKNMEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I G+D+ +A L ++++ F ELEE +++ DL + +G
Sbjct: 61 YHNHEIIVKLKGVDDREAAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 119 TMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 177
>gi|312134786|ref|YP_004002124.1| 16S rRNA processing protein rimm [Caldicellulosiruptor owensensis
OL]
gi|311774837|gb|ADQ04324.1| 16S rRNA processing protein RimM [Caldicellulosiruptor owensensis
OL]
Length = 169
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + YVL ++ + +L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNIV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I +I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISSIDEAQKLKNRYIVIERERAK--KLPKDTYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKDIVKEVNIEEGYMKIRIVEGLLD 169
>gi|229491346|ref|ZP_04385170.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
gi|229321631|gb|EEN87428.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
Length = 190
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 10/182 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ + P D VL RE + + R
Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + A LR + + + + DEF++ +LE ++ G G V
Sbjct: 63 LLRLEGVSDRGDADALRGTLFVIDSSELEPSD-DPDEFYDHELEGLKVVLTDGAEVGSVI 121
Query: 121 GVYNFGAGSILEIKNTME--KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V + AG +L I+ E LIPF V V++ + ++I+P L+
Sbjct: 122 EVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEPPEGLLDPDFGDKSN 181
Query: 179 YD 180
D
Sbjct: 182 SD 183
>gi|81428332|ref|YP_395332.1| 16S rRNA processing protein, RimM [Lactobacillus sakei subsp. sakei
23K]
gi|109893021|sp|Q38XQ8|RIMM_LACSS RecName: Full=Ribosome maturation factor rimM
gi|78609974|emb|CAI55021.1| 16S rRNA processing protein, RimM [Lactobacillus sakei subsp. sakei
23K]
Length = 176
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 78/175 (44%), Gaps = 7/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNK 58
+K + I THG+ GEV + + + + + + N + + M + +
Sbjct: 2 PEKYYQVGKIVNTHGIRGEVRVIATTDFTEERFKKGTHLAVEMPNGLTPVTVSAMRQHKQ 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
++ F G+ NI+ + L + +D++LE+DE++ D+ +E + G +G
Sbjct: 62 FYLLQFEGLGNINDVELFKGHNLKIAASE-RDDQLEDDEYYYGDIIGLEVIEESDGTSYG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+V + + G + IK L+PF K + +++++ K ++ ++N
Sbjct: 121 KVSEIIDPGPNDVWVIKRRGRSDLLLPFLKSVIKKIDIEAGKAYVEVPEGLIDNE 175
>gi|30249636|ref|NP_841706.1| hypothetical protein NE1672 [Nitrosomonas europaea ATCC 19718]
gi|48474816|sp|Q82U37|RIMM_NITEU RecName: Full=Ribosome maturation factor rimM
gi|30138999|emb|CAD85583.1| RimM [Nitrosomonas europaea ATCC 19718]
Length = 169
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILK---MYRKNKRFI 61
+V++ I HG+ G++ + + L Y ++ S D + +I++ + + I
Sbjct: 1 MVVLGRIAGPHGIRGQIKVIPFTEYVDGLMEYPVWCLSRDEKNWQIVRPATFFIHDNLLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELE-EDEFFNTDLEEMETFDRQGKYWGQVC 120
T +G + SASEL+ L + R + ED ++ TDL + + QG+ G V
Sbjct: 61 VTLTGYSDRTSASELKGLLVAVPRSQLPPLSKDGEDGYYWTDLIGISVVNMQGEPLGTVA 120
Query: 121 GVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ GA +L ++ + K LIPF + +V+L+ +I +D
Sbjct: 121 GLFETGANDVLRVRLSGSSKDELIPFVDQVIRQVDLESRQITVD 164
>gi|46143634|ref|ZP_00134829.2| COG0806: RimM protein, required for 16S rRNA processing
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126209251|ref|YP_001054476.1| 16S rRNA-processing protein RimM [Actinobacillus pleuropneumoniae
L20]
gi|165977224|ref|YP_001652817.1| 16S rRNA-processing protein RimM [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190151142|ref|YP_001969667.1| 16S rRNA-processing protein rimM [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303253214|ref|ZP_07339363.1| 16S rRNA-processing protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246717|ref|ZP_07528787.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307248858|ref|ZP_07530871.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251086|ref|ZP_07533010.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307255702|ref|ZP_07537506.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307257886|ref|ZP_07539642.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307260154|ref|ZP_07541864.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307262282|ref|ZP_07543931.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307264491|ref|ZP_07546076.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|166226421|sp|A3N385|RIMM_ACTP2 RecName: Full=Ribosome maturation factor rimM
gi|238687520|sp|B0BSV9|RIMM_ACTPJ RecName: Full=Ribosome maturation factor rimM
gi|238692359|sp|B3GZ39|RIMM_ACTP7 RecName: Full=Ribosome maturation factor rimM
gi|126098043|gb|ABN74871.1| 16S rRNA-processing protein rimM [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165877325|gb|ABY70373.1| 16S rRNA processing protein RimM [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189916273|gb|ACE62525.1| 16S rRNA-processing protein rimM [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302647896|gb|EFL78103.1| 16S rRNA-processing protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306852417|gb|EFM84652.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306854785|gb|EFM86975.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306856916|gb|EFM89048.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861379|gb|EFM93369.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306863616|gb|EFM95543.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865800|gb|EFM97678.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306868045|gb|EFM99872.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306870188|gb|EFN01947.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 175
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHNNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G D+ SA L + ++ F ELEE +++ DL + + + G V +
Sbjct: 68 KGSDDRESAQLLTNAEIGVDLSVFP--ELEEGDYYWHDLIGCQVINLEDYSMGVVTELME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|103488203|ref|YP_617764.1| 16S rRNA processing protein RimM [Sphingopyxis alaskensis RB2256]
gi|123252941|sp|Q1GPJ1|RIMM_SPHAL RecName: Full=Ribosome maturation factor rimM
gi|98978280|gb|ABF54431.1| 16S rRNA processing protein RimM [Sphingopyxis alaskensis RB2256]
Length = 163
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+ V +A I HG+ GEV + + L + ++ +R+L + + N+ +A F
Sbjct: 4 DRPVTLAAIAGAHGVRGEVRLKLFGEGAETLRAFSVFDAGDRKLTLKSVRPANQGAVAAF 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I + +A LR L R L E+++ DL + +G G V V N
Sbjct: 64 VEIADRSAAEALRGTLLTVPRSALP--PLGPGEYYHHDLIGLPCVSTEGAPVGHVAAVDN 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
FGAG ILEI+ K F++P T AV + +
Sbjct: 122 FGAGDILEIEKPDGKRFMVPMTVTAVPTWDAE 153
>gi|253682584|ref|ZP_04863381.1| 16S rRNA processing protein RimM [Clostridium botulinum D str.
1873]
gi|253562296|gb|EES91748.1| 16S rRNA processing protein RimM [Clostridium botulinum D str.
1873]
Length = 162
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THGL GE+ + ++ + D + I + + I
Sbjct: 1 MEQFLAVGKIINTHGLKGEIKLLPSTDDVERFKQLKKAYIDGEVIEIEGCKFQPGKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+D+I A L++ + R++ +L E ++ D+ +D K G++ +
Sbjct: 61 IKDVDSIEQAQRLKNKYIKVSREN--AAKLPEGCYYEADIVGCIVYDENDKELGKIDEII 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + IK + LIP K ++ +++ KI+I P+
Sbjct: 119 RTGSNDVYWIK--GKNELLIPAIKSVIVTIDVNSKKIVIKPLE 159
>gi|118469073|ref|YP_886777.1| 16S rRNA-processing protein RimM [Mycobacterium smegmatis str. MC2
155]
gi|166226453|sp|A0QV39|RIMM_MYCS2 RecName: Full=Ribosome maturation factor rimM
gi|118170360|gb|ABK71256.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis str. MC2
155]
Length = 173
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN------RYVLYSNDNRELRILKMYRKNKRFI 61
+++ + HG++GEV ++ ++P R S RE I + R +
Sbjct: 3 LVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPRSGAEREYTIESVRAHGGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+G+ + + A ELR + + + DEF++ +LE M G+V
Sbjct: 63 VRLAGVADRNGADELRGTVFLVDTAELPAID-DPDEFYDHELEGMRVVTVDDAPVGKVAE 121
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G IL +K + + L+PF V V+ Q I+IDP L+
Sbjct: 122 VLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLD 171
>gi|300854477|ref|YP_003779461.1| putative 16S rRNA processing protein [Clostridium ljungdahlii DSM
13528]
gi|300434592|gb|ADK14359.1| predicted 16S rRNA processing protein [Clostridium ljungdahlii DSM
13528]
Length = 162
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + I THG+ GE+ + ++ + D I++ ++K+ I
Sbjct: 1 MKDFITVGQIINTHGIKGELKVYPLTDDIERFKKLKSAYIDGTLKNIIECKLQSKKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A + + R D +LEE +F TD+ D G ++G+V V
Sbjct: 61 IEGIDSIEEAMAYKQKYIEIPRND--AVKLEEGTYFITDIIGCSVVDEDGTFYGKVGDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + IK E LIP + V+ +++++ +I+I P+ +
Sbjct: 119 HTHNNDVYWIK--GENELLIPAIENVVVSIDVEKEEIVIKPVKTWM 162
>gi|219682748|ref|YP_002469131.1| 16S rRNA processing protein RimM [Bifidobacterium animalis subsp.
lactis AD011]
gi|219620398|gb|ACL28555.1| 16S rRNA processing protein RimM [Bifidobacterium animalis subsp.
lactis AD011]
Length = 217
Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 30/212 (14%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN-----RELRILKMYR 55
+ +L+ + IG GL GEV ++ Y ++P VLY+ ++ R +
Sbjct: 11 QPQELLRVCRIGKAQGLKGEVSVELYTDDPHARFAPGEVLYARESAADALRPYTVAAART 70
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-- 113
R+ F G+D+ ++A LR+ LY + +EL++DEF+ DL +E +
Sbjct: 71 FKNRWYVRFEGVDDRNAAEALRNTVLYGE-----PQELDDDEFYPKDLLGLEVYLESEVS 125
Query: 114 ---------------KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G+V V GA +L+I+ + FL+PF + V EVNL+E
Sbjct: 126 AANADDAPEGAEFEFTDLGKVVDVIE-GAQWLLKIRMPNREAFLLPFVEALVPEVNLEEG 184
Query: 159 KILIDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ +DP + + A S
Sbjct: 185 YLTVDPPGGLVPGIGEPDIADTADSVGAAPPS 216
>gi|269797643|ref|YP_003311543.1| 16S rRNA processing protein RimM [Veillonella parvula DSM 2008]
gi|269094272|gb|ACZ24263.1| 16S rRNA processing protein RimM [Veillonella parvula DSM 2008]
Length = 165
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 2/167 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K + + + I HG+ G++ I + P D +E + + +
Sbjct: 1 MKHNDFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDGKEYHVASARFHKQFVL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F I N ++A + +R+D EL E ++ D+ +E D G G V
Sbjct: 61 ASFKEIPNRNTAELFTKKAIQVRREDL--VELPEGRYYIFDIIGLEVQDTMGNVLGTVTD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + E L + V ++N++ +++DP
Sbjct: 119 VLQPGANDVYVVSKDGEPDQLFAAIEEVVKDINVKNKLMIVDPPEWI 165
>gi|241761943|ref|ZP_04760028.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373623|gb|EER63195.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 163
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
D+L+ +A + HG+ GEV + + + Y ++S + L + K+ K ++A
Sbjct: 5 PDRLITLAVVTGAHGITGEVRLKPFTEDAAQFKAYGIFSANGTPLTLKKLRPDPKGWVAR 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FS I + + A LR L R+ D L DE++ DL + D G+ G V
Sbjct: 65 FSEITDRNQAEALRGTALTVPRKALPD--LPADEYYYIDLIGLPCVDSSGQSIGVSVAVE 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
N+GAG ILEI+ EK F++P + V++ ++ ++I
Sbjct: 123 NYGAGDILEIEKADEKRFMVPIAQA----VDVHDDHLVI 157
>gi|308187874|ref|YP_003932005.1| 16S rRNA-processing protein rimM [Pantoea vagans C9-1]
gi|308058384|gb|ADO10556.1| 16S rRNA-processing protein rimM [Pantoea vagans C9-1]
Length = 182
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 12 NPIVLGKMGAAYGIRGWLKVFSSTEDAESIFNYQPWFIQRAGKWQQVELEGWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A++L + ++ LEE +++ DL + + +G G+V
Sbjct: 72 IKVKGIDDRDAAAQLTNCEIQVDSTQLPS--LEEGDYYWKDLMGCQVVNLEGYEMGKVID 129
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K + LIPF + +V+L I +D
Sbjct: 130 MMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIRKVDLSTGVIEVDWDPG 181
>gi|218132455|ref|ZP_03461259.1| hypothetical protein BACPEC_00314 [Bacteroides pectinophilus ATCC
43243]
gi|217992565|gb|EEC58567.1| hypothetical protein BACPEC_00314 [Bacteroides pectinophilus ATCC
43243]
Length = 169
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
+++ + + I +THG+ GEV + ++P + V + +L I + +
Sbjct: 1 MEQTLRVGVITSTHGIRGEVKVFPTTDDPKRFDYLEEVIVDMKREPVKLEIEGVKYFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G DNI+ + L R++ ELE+ EFF DL ++ +G G +
Sbjct: 61 VILKFKGYDNINDIQQFVKKDLLVTREN--AVELEDGEFFICDLVGLKVVTDEGVELGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + + K LIP +LE N +E I + + L+
Sbjct: 119 KDIMQTGANDVYVVGMNDGKEVLIPSIPQCILEKNPEEGYIRVHLLKGLLD 169
>gi|56551973|ref|YP_162812.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260752482|ref|YP_003225375.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|67461300|sp|Q5NNK9|RIMM_ZYMMO RecName: Full=Ribosome maturation factor rimM
gi|56543547|gb|AAV89701.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258551845|gb|ACV74791.1| 16S rRNA processing protein RimM [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 163
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
D+L+ +A + HG+ GEV + + + Y ++S + L + K+ K ++A
Sbjct: 5 PDRLITLAVVTGAHGITGEVRLKPFTEDAAQFKAYGIFSANGTPLTLKKLRPDPKGWVAR 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FS I + + A LR L R+ D L DE++ DL + D G+ G V
Sbjct: 65 FSEITDRNQAEALRGTALTVPRKALPD--LPADEYYYIDLIGLPCVDPSGQSIGVSVAVE 122
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
N+GAG ILEI+ EK F++P + V++ ++ ++I
Sbjct: 123 NYGAGDILEIEKADEKRFMVPIAQA----VDVHDDHLVI 157
>gi|293392759|ref|ZP_06637077.1| 16S rRNA processing protein RimM [Serratia odorifera DSM 4582]
gi|291424618|gb|EFE97829.1| 16S rRNA processing protein RimM [Serratia odorifera DSM 4582]
Length = 182
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ +++ +G+T+G+ G + + S N + Y + + + + + R N+
Sbjct: 10 PKQPLVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQKAGQWQVVELESWKRHNQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I ID+ +A+ L + ++ + LE D+++ DL + G G+V
Sbjct: 70 LIIKIKDIDDRDAANLLTNCEIVVDSEQLP--PLEGDDYYWKDLMGCQVVTTSGYELGKV 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ ++ ++ K L+PF + +V+L I D
Sbjct: 128 IDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLAAKVIEADWDPG 181
>gi|258543989|ref|ZP_05704223.1| 16S rRNA processing protein RimM [Cardiobacterium hominis ATCC
15826]
gi|258520767|gb|EEV89626.1| 16S rRNA processing protein RimM [Cardiobacterium hominis ATCC
15826]
Length = 182
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE---LRILKMYRKNKRFIA 62
+++ I HG+ G+V + S L +Y + + R L++L+ K +A
Sbjct: 8 IIVGRIVGVHGIRGQVKVHSDCRPRESLFQYRQFIARQNGRPDIALQLLRGQTSGKGLVA 67
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+GI++ A L LY R + + E++ DL + +RQG G+V +
Sbjct: 68 AFTGINDRDQALALGGYTLYISRDQLPAPQ--DGEYYWADLIGLRVENRQGITLGRVSEL 125
Query: 123 YNFGAGSILEIKNTMEK-TFLIPFTKF-AVLEVNLQENKILID 163
+ GA IL +K K LIPF + V ++L + +D
Sbjct: 126 FETGANDILVVKADNSKAEILIPFVRPRYVEAIDLANGLMRVD 168
>gi|293374722|ref|ZP_06621030.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
gi|292646636|gb|EFF64638.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
Length = 168
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + + I TH L GEV + S ++ + + ++ ++ + E+ +
Sbjct: 2 EFLQVGKIVNTHALQGEVKVVSNSDFKEERFKKGSQLFIEFNGEYIEVIVATHREHKGAD 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F +++I+ + + L ++ D L+E+EF+ ++ G+ G++
Sbjct: 62 LLKFKHLNSINDVEKYKGCDLLVSAENLDD--LDENEFYYFEIIGCTVKATTGEEIGEIT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + +K +K LIP+ + V V+++ +++I+ + L
Sbjct: 120 EILETGANDVWVVKRKGQKDALIPYIEDVVKSVDVEAKEVIIEVLEGLL 168
>gi|325840597|ref|ZP_08167078.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
gi|325490246|gb|EGC92579.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
Length = 168
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + + I TH L GEV + S ++ + + ++ ++ + E+ +
Sbjct: 2 EFLQVGKIVNTHALQGEVKVVSNSDFKEERFKKGNQLFIEFNGEYIEVIVATHREHKGAD 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F +++I+ + + L ++ D L+E+EF+ ++ G+ G++
Sbjct: 62 LLKFKHLNSINDVEKYKGCDLLVSAENLDD--LDENEFYYFEIIGCTVKATTGEEIGEIT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ GA + +K +K LIP+ + V V+++ +++I+ + L
Sbjct: 120 EILETGANDVWVVKRKGQKDALIPYIEDVVKSVDVEAKEVIIEVLEGLL 168
>gi|298252294|ref|ZP_06976097.1| 16S rRNA processing protein RimM [Ktedonobacter racemifer DSM
44963]
gi|297546886|gb|EFH80754.1| 16S rRNA processing protein RimM [Ktedonobacter racemifer DSM
44963]
Length = 198
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 8/190 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELR---ILKMYR 55
M + + I G+ GE+ + + P V S D + I +
Sbjct: 3 MQNKTEWATIGKIVALFGVRGELKVLPLTDIPDRFTSLKAVHVSTDGHTFKRCIITSVRP 62
Query: 56 -KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
K + GI + + A LRD L+ + +L D ++ D+ ++ + +
Sbjct: 63 YKGDMLLVKLEGITSANDAEALRDQSLWIPESELA--QLPPDSYYQHDILGLKVYTLSNQ 120
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
GQ+ ++ G + ++ K +IP K V ++++ + IDP+ L++ +
Sbjct: 121 EVGQIVDLFPTGGNDVYVVRTPERKEVMIPAIKTVVHQIDVLRGVMYIDPLPGLLDDQAV 180
Query: 175 KNPQYDCPLD 184
+ + +
Sbjct: 181 LDNSNEEDKE 190
>gi|188534779|ref|YP_001908576.1| 16S rRNA-processing protein RimM [Erwinia tasmaniensis Et1/99]
gi|188029821|emb|CAO97702.1| 16S rRNA-processing protein RimM [Erwinia tasmaniensis Et1/99]
Length = 185
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 73/186 (39%), Gaps = 21/186 (11%)
Query: 1 MVKLDK---------LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRE 47
MV + K +++ +G+ +G+ G + + S + + Y + + +
Sbjct: 1 MVNMSKQLTSQPPATPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQL 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + R N+ I GID+ +A L + ++ + EL+ +++ DL +
Sbjct: 61 VELEGWKRHNQDMIIKVKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQ 118
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKIL 161
+G G+V + G+ +L +K + LIPF + V+L I
Sbjct: 119 VVTVEGYELGKVIDMMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIK 178
Query: 162 IDPIAA 167
+D
Sbjct: 179 VDWDPG 184
>gi|88808142|ref|ZP_01123653.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
gi|88788181|gb|EAR19337.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
Length = 190
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDN-RELRILKMYRKNKR 59
D + + + GL GE+ ++ ++ P R++ RE+ + ++ +
Sbjct: 19 DHWLPVGKVVGAQGLRGELRVNPASDFPERFTQPGPRWLQTQGSPPREIELTSGRQQPGK 78
Query: 60 --FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYW 116
FI F GIDN SA L L + D +LEE EF DL +E R+ +
Sbjct: 79 SLFIVRFKGIDNRSSAEALVGQTLLVRADDRP--QLEEGEFHLLDLVGLEARLSREAEAI 136
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +LEI + L+PF + V EVNLQ+ IL+ P L
Sbjct: 137 GTVTDLIS-GGNDLLEITRPDGRKLLVPFVEAIVPEVNLQDGWILLTPPPGLLE 189
>gi|227824780|ref|ZP_03989612.1| 16S rRNA processing protein rimM [Acidaminococcus sp. D21]
gi|226905279|gb|EEH91197.1| 16S rRNA processing protein rimM [Acidaminococcus sp. D21]
Length = 167
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR 59
M+ +++ +++ I HG+ GE I + P + +++ +D R+L ++ + +
Sbjct: 1 MMTMEQQIVIGKIVAPHGVRGEFRIMPLTDQPQRYAKMKIVHLDDGRDLTVVSVRQHKNV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ I N+ A LR +L ++ L + +F+ D+ G+ +G V
Sbjct: 61 YLMMVKEITNMDEAEALRGRQLVISPKELP--PLPKGQFYVRDILGFAVESPDGEAFGTV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + G+ + I + + L+ K +L ++ E+K++
Sbjct: 119 KDVISPGSTDVFVIASPTGEEILLAAIKENILTIDWAEHKVVAKLPEWI 167
>gi|260101391|ref|ZP_05751628.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
gi|260084802|gb|EEW68922.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
Length = 184
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P + L S+ NR L + K + ++ F
Sbjct: 19 VARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQFK 78
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +LR L +D EL + ++ D+ + + D + GK G++ + +
Sbjct: 79 EITDIDQAEKLRGQILVVSEED--RGELPDGVYYYKDIFDCDVIDEETGKRIGKIVDIQS 136
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I ++ K + IP V +V++ K+ ++ + +
Sbjct: 137 PGANDIWLVREDDGKEYWIPNIADVVKKVDVAAKKVYVELMEGLRDED 184
>gi|158320499|ref|YP_001513006.1| 16S rRNA processing protein RimM [Alkaliphilus oremlandii OhILAs]
gi|166979605|sp|A8MHC3|RIMM_ALKOO RecName: Full=Ribosome maturation factor rimM
gi|158140698|gb|ABW19010.1| 16S rRNA processing protein RimM [Alkaliphilus oremlandii OhILAs]
Length = 167
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFI 61
+ K++ + I THG+ G++ + + +V + I + K I
Sbjct: 1 MAKMLRVGKITNTHGIKGDLKVLPLTDYFERFEELEWVYIEGFKDKFYIENIKYKPTLVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G +I+ + +D L + L ED ++ D+ ++ F + +Y G+V
Sbjct: 61 LSFEGYGDINLVEKFKDRYLLIDESQRRI--LPEDTYYIADIIGLDVFTVKDEYIGKVVD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ + I+ K +IP K + E++L++ +I IDPI +
Sbjct: 119 IIQTGSSEVYVIRMNNLKEIMIPSVKEFMPEISLEKKRITIDPIEGMIE 167
>gi|326333673|ref|ZP_08199910.1| 16S rRNA processing protein RimM [Nocardioidaceae bacterium
Broad-1]
gi|325948579|gb|EGD40682.1| 16S rRNA processing protein RimM [Nocardioidaceae bacterium
Broad-1]
Length = 181
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 10/179 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDN--------RELRILKMYRKNKR 59
L+ IG HG+ G V ++ + P + + L + +
Sbjct: 2 LVGRIGKPHGIRGFVTVEVRTDEPDRRFAEGTVLRTQPPKGSAYAAKRLTVEGARWHGQV 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F I + + A R L+A + E + DE+++ L + FD +G+ G V
Sbjct: 62 LQVAFEEITDRNEAEAARGTLLFADVPAEETPE-DPDEYYDHQLIGLTAFDEEGRELGTV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
+ + GA +L I+ + L+PF K V V+L E K++I + +
Sbjct: 121 KALVHGGAQDLLTIRTPDRRDALVPFVKALVPVVDLTEKKVVIADRPGLVTPFPEDEDE 179
>gi|226365998|ref|YP_002783781.1| 16S rRNA-processing protein RimM [Rhodococcus opacus B4]
gi|254797760|sp|C1B2R9|RIMM_RHOOB RecName: Full=Ribosome maturation factor rimM
gi|226244488|dbj|BAH54836.1| putative 16S rRNA processing protein RimM [Rhodococcus opacus B4]
Length = 183
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ + P D VL + RE R+ + R
Sbjct: 3 LVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQTVNTYRVEAAREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A LR + + + DEF++ +LE + G G V
Sbjct: 63 LLRLEGVPDRTAADALRGTLFVIDSAELVPSD-DPDEFYDHELEGLSVRLADGTELGAVI 121
Query: 121 GVYNFGAGSILEIKNTMEK--TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L I+ E+ L+PF V V++ + ++IDP L+
Sbjct: 122 EVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDPPEGLLD 173
>gi|50122280|ref|YP_051447.1| 16S rRNA-processing protein RimM [Pectobacterium atrosepticum
SCRI1043]
gi|59798692|sp|Q6D1T9|RIMM_ERWCT RecName: Full=Ribosome maturation factor rimM
gi|49612806|emb|CAG76256.1| 16S rRNA processing protein [Pectobacterium atrosepticum SCRI1043]
Length = 182
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
++M IG+ +G+ G + + S + + Y + + + + I N+ I
Sbjct: 12 NPIVMGKIGSAYGIRGWLRVFSSTEDADSIFDYQPWFIQSKSGWQLVEIEGWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+ +A+ L + ++ D L +++ DL + G G++
Sbjct: 72 IKVKGADDRDAANLLTNCEIVVDSSQLPD--LGVGDYYWKDLIGCQVVTVTGYELGKIID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF T+ V V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLTEQVVKRVDLSAQTIEVDWDPG 181
>gi|291615193|ref|YP_003525350.1| 16S rRNA processing protein RimM [Sideroxydans lithotrophicus ES-1]
gi|291585305|gb|ADE12963.1| 16S rRNA processing protein RimM [Sideroxydans lithotrophicus ES-1]
Length = 166
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN-KRFI 61
+V+M + G+ G V + ++ L Y + R L +L+ K I
Sbjct: 1 MVVMGKVVGAQGIQGWVKVQAFTEYLDSLLDYSTWYVGNEQSWRPLEVLEANVHGGKVLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI + +A + + L + R +++ E E++ +DL + + G+ +G V
Sbjct: 61 AKLQGIVDRTAAEKCKGLLIAVPRDSLPEQQ--EGEYYWSDLIGLSVENLAGEKFGTVDS 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L +K +T + PF + +V+LQ I +D
Sbjct: 119 LLETGANDVLVVKGEGGETLM-PFIASVIRQVDLQNKLIRVD 159
>gi|313202053|ref|YP_004040711.1| 16S rRNA processing protein rimm [Methylovorus sp. MP688]
gi|312441369|gb|ADQ85475.1| 16S rRNA processing protein RimM [Methylovorus sp. MP688]
Length = 161
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKNKRFIATFS 65
M + +G+ G + I ++ D + + L +E + K +
Sbjct: 1 MGRVVAPYGIYGWLKIQPDTETIDSLFDYDNWWLGRDPKWQEYPVEAAKVHGKTLLVKLV 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID+ +A + ++ R+ E EE E++ +DL + + Q +G V V+
Sbjct: 61 GIDDRDAAFAAKGKQVSVPREQLP--EAEEGEYYWSDLIGLRVSNLQQVDFGTVVDVFET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA ++ +K+ + L+PFT AV EVN++ +L+D
Sbjct: 119 GANDVVVVKDDAGRERLVPFTAEAVPEVNVEAGTMLVD 156
>gi|256847351|ref|ZP_05552797.1| 16S rRNA processing protein RimM [Lactobacillus coleohominis
101-4-CHN]
gi|256716015|gb|EEU30990.1| 16S rRNA processing protein RimM [Lactobacillus coleohominis
101-4-CHN]
Length = 171
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNREL---RILKMYR 55
M K + I THG+ GEV + + + + L N E I K
Sbjct: 1 MPKP-NYYHVGKIVNTHGIRGEVRVVPITDFADERFKAGSQLVIEKNHEYIPVTIEKARP 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F G DNI+ + RD L +EL + E++ + ++ G++
Sbjct: 60 HKGMELVKFQGFDNINEVEKFRDCFLAVSGDQ--QDELADGEYYYHQIIGLDVVTVDGRH 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G++ + + GA + ++ + L+P + +V+L + + ++ +
Sbjct: 118 LGKIKEIMSPGANDVWVVQRENQSDLLLPVINDVIKDVDLAKQVVTVELLEGL 170
>gi|255325256|ref|ZP_05366362.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
gi|255297821|gb|EET77132.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
Length = 165
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE---LRILKMYRKNKRFIA 62
+++ + +HG+ GEV +++ + P VL+ ++ L I + R +
Sbjct: 3 LMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHTLTIKAVRSHKGRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF I + A LR K +A D ++D F++ +LE + +G+ G+V V
Sbjct: 63 TFEEIKDRTVADSLRGTKFFAAPLDS-----DDDGFYDHELEGLRVLL-EGEEIGEVTSV 116
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ +LE++ K LIPF V EVNL+ IDP L+
Sbjct: 117 IHGGSQDLLEVELDNSKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLD 164
>gi|209573737|sp|A1AN01|RIMM_PELPD RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDN--RELRILKMYR 55
M+ + L+ + + THG+ G + + SY+ + L + +L S D +
Sbjct: 1 MIDSESLIPVGKLVATHGIRGMLKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +F+ F G+D+I A L ++ +R E EEDE++ DL +E +G
Sbjct: 61 RPGKFLIGFKGVDHIDQAQTLVGSEICLRRDQLP--EPEEDEYYWCDLIGLEVATVEGMA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + ++ G+ I ++ + +LIP + V+L+ ++LI P+ L+
Sbjct: 119 LGVLEEIFKAGSSDIYVVRGA-GREYLIPAIADVIHSVDLEMGRMLITPLEGLLD 172
>gi|283479486|emb|CAY75402.1| 16S rRNA-processing protein rimM [Erwinia pyrifoliae DSM 12163]
Length = 185
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 73/186 (39%), Gaps = 21/186 (11%)
Query: 1 MVKLDK---------LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRE 47
MV + K +++ +G+ +G+ G + + S + + Y + + +
Sbjct: 1 MVNMSKQLTAQPPATPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQL 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + R N+ I GID+ +A L + ++ + EL+ +++ DL +
Sbjct: 61 VELEGWKRHNQDMIIKVKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQ 118
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKIL 161
+G G+V + G+ +L +K + LIPF + V+L I
Sbjct: 119 VVTVEGYELGKVIDMMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIK 178
Query: 162 IDPIAA 167
+D
Sbjct: 179 VDWDPG 184
>gi|116333580|ref|YP_795107.1| RimM protein, required for 16S rRNA processing [Lactobacillus
brevis ATCC 367]
gi|122269733|sp|Q03RU6|RIMM_LACBA RecName: Full=Ribosome maturation factor rimM
gi|116098927|gb|ABJ64076.1| 16S rRNA processing protein RimM [Lactobacillus brevis ATCC 367]
Length = 172
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 66/166 (39%), Gaps = 7/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRE--LRILKMYRKNKRFIA 62
+ TI THG+ GEV + + + P Y + L + + + ++
Sbjct: 6 VGTIVNTHGIKGEVRVVATTDFPESRFAVGSTLYAFQKDQATPVTLTVASVRQHKNFYLL 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F G +I+ + L + + +L E++ + ++ G+ G++ +
Sbjct: 66 SFEGKPSINDVEIFKQSTLKVTDNELESNDLRPGEYYYHQIVGLDAVTVDGENLGKIKEI 125
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + + + L+P + V+L + K++++ +
Sbjct: 126 LSPGANDVWVVARPGKSDLLLPKIDQVIKRVDLDQGKVIVELMEGL 171
>gi|310766682|gb|ADP11632.1| 16S rRNA processing protein [Erwinia sp. Ejp617]
Length = 185
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+ +G+ G + + S + + Y + + + + + R N+ I
Sbjct: 15 NPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A L + ++ + +L+ +++ DL + +G G+V
Sbjct: 75 IKVKGIDDRDAAGLLTNCEIVVDSEQLP--QLDNGDYYWKDLMGCQVVTVEGYELGKVID 132
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K + LIPF + V+L I +D
Sbjct: 133 MMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIKVDWDPG 184
>gi|317049259|ref|YP_004116907.1| 16S rRNA processing protein RimM [Pantoea sp. At-9b]
gi|316950876|gb|ADU70351.1| 16S rRNA processing protein RimM [Pantoea sp. At-9b]
Length = 182
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
V++ +G +G+ G + + S + Y + + + + + N+ I
Sbjct: 12 NPVVLGKMGAAYGIRGWLKVFSSTEEAESIFDYQPWFIQHAGQWQLVELEGWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+GID+ +A++L + ++ LEE +++ DL + + +G G+V
Sbjct: 72 IKVNGIDDRDAAAQLTNCEITVDSAQLPA--LEEGDYYWKDLMGCKVVNLEGYEMGKVID 129
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K + LIPF + +V+L I +D
Sbjct: 130 LMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKKVDLSTGTIEVDWDPG 181
>gi|15836713|ref|NP_297401.1| 16S rRNA-processing protein RimM [Xylella fastidiosa 9a5c]
gi|71899241|ref|ZP_00681403.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|14423900|sp|Q9PH38|RIMM_XYLFA RecName: Full=Ribosome maturation factor rimM
gi|9104888|gb|AAF82921.1|AE003864_9 16S rRNA processing protein [Xylella fastidiosa 9a5c]
gi|71730974|gb|EAO33043.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
Length = 170
Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ + GL GE+ I+S+ + RY + + L + Y
Sbjct: 1 MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYE 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
KR IATF GI++ ++ + ++Y R DE++ DLE ++ +G
Sbjct: 61 TGKRLIATFPGINDRNAVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVV 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ GA ++ I E+ LIPF V V+ + +I++D
Sbjct: 119 LGSVSHLFSNGANDVIVIH--GERERLIPFVQPDYVKSVDFEAERIVVD 165
>gi|167630253|ref|YP_001680752.1| 16S rRNA processing protein rimm [Heliobacterium modesticaldum
Ice1]
gi|209573559|sp|B0TH66|RIMM_HELMI RecName: Full=Ribosome maturation factor rimM
gi|167592993|gb|ABZ84741.1| 16S rRNA processing protein rimm [Heliobacterium modesticaldum
Ice1]
Length = 171
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 9/172 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKN 57
+ K V + I T G+ G+V + P N L I +
Sbjct: 1 MAKRVRVGQIVNTQGVRGQVRLWPLTEKPSRFNEIKRVFVEAPPQGAPEVLTITSAHPLK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K I +F I ++ A L+ L ++ E D +++ LE + F G+ G
Sbjct: 61 KLVIVSFQEISDMTQAERLKGCYLTIPVEEVPAPE--PDSYYHFQLEGLSVFTEAGERLG 118
Query: 118 QVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
Q+ + G+ + ++ LIP K VL+V+L + +
Sbjct: 119 QIEEILETGSNDVYVVRQASPPGEVLIPALKSVVLKVDLAAGTMTVRLPDGL 170
>gi|13431802|sp|P57935|RIMM_PASMU RecName: Full=Ribosome maturation factor rimM
gi|12721657|gb|AAK03380.1| RimM [Pasteurella multocida subsp. multocida str. Pm70]
Length = 178
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 14/179 (7%)
Query: 1 MVKLD--KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
MV ++ ++ ++ +G+T+G+ G + I S + Y + + +
Sbjct: 1 MVNMEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I +D+ +A L ++++ F ELEE +++ DL + +
Sbjct: 61 YHNNDLIVKLKHVDDRETAQTLANIEIGVDLAVFP--ELEEGDYYWHDLIGCNVVNLENY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L ++ ++ LIPF + V V+L I++D A
Sbjct: 119 AMGTVTEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRVDLNTKTIVVDWDAG 177
>gi|239996292|ref|ZP_04716816.1| 16S rRNA-processing protein [Alteromonas macleodii ATCC 27126]
Length = 173
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 9/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-SNDNRELRILKMYRKNKR 59
M V++ IG +G+ G V I+SY P + Y + D +E +I + K
Sbjct: 1 MSLASDKVIVGKIGAPYGVKGWVKINSYTETPEGIFDYAPWFLGDEKEYQIDQWRPHGKS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A +++L + D L ++ + +L M+ QG G V
Sbjct: 61 LVAKIVGVDSRDDAERIKNLDININASQLPD--LGDEGVYWRELTGMKVVTTQGYDLGVV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
V+N GA ++ +K + K L+PF V EV+ + I +D
Sbjct: 119 KEVFNTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKVIKVDWDPG 172
>gi|78224065|ref|YP_385812.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
gi|109893018|sp|Q39RN7|RIMM_GEOMG RecName: Full=Ribosome maturation factor rimM
gi|78195320|gb|ABB33087.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
Length = 173
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--LRILKMYR 55
M+ LVL+ + THG+ G++ + ++ + L DNR+ + +
Sbjct: 1 MLGSTDLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAV 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + T G NI+ L +L+A+R F L+E EF+ DL + +G
Sbjct: 61 HRNRVLLTLKGFANINEVLHLVGRELFARRDQFP--PLDEGEFYWCDLIGLSVTTSEGLS 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + G+ + +++ E+ +LIP + V+ V+L + + + P L+
Sbjct: 119 LGRIEEIIATGSNDVYVVRD-GEREYLIPALEDIVVGVDLDKGIMTVSPTEGLLD 172
>gi|289644819|ref|ZP_06476872.1| 16S rRNA processing protein RimM [Frankia symbiont of Datisca
glomerata]
gi|289505375|gb|EFD26421.1| 16S rRNA processing protein RimM [Frankia symbiont of Datisca
glomerata]
Length = 208
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D+ V++ IG HG+ GEV ID + P + L + R
Sbjct: 32 DEPVVVGRIGRPHGIRGEVTIDVRTDVPERRFAPGTHLCGEPPTATPLMVAVARWHAGRL 91
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-----FFNTDLEEMETFDRQGKY 115
+ F G+ + +A LR L + DE +++ DL +
Sbjct: 92 LVRFEGVGDRDAAEALRGRVLTIAAGQAGQAADDGDEDAGNLWWDRDLVGLRVVTVDDAD 151
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V V + AG +L +++ + L+PF + V V + +I++DP +
Sbjct: 152 VGTVVDVVHTPAGELLAVEHVGGREVLVPFVREIVPTVEVPVGRIVVDPPPGLFD 206
>gi|88930448|sp|Q4QNY7|RIMM_HAEI8 RecName: Full=Ribosome maturation factor rimM
Length = 178
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
M +++ + ++ +G+T+G+ G + I S + Y + + + + +
Sbjct: 1 MKNMEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
N I G+D+ +A L ++++ F ELEE +++ DL + +G
Sbjct: 61 YHNHEIIVKLKGVDDRETAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGY 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G V + G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 119 TMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 177
>gi|300704719|ref|YP_003746322.1| 16S rRNA processing protein [Ralstonia solanacearum CFBP2957]
gi|299072383|emb|CBJ43721.1| 16S rRNA processing protein [Ralstonia solanacearum CFBP2957]
Length = 213
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKM 53
D LV + +G +G+ G + + + + L + L S+D R L +
Sbjct: 41 PDDLVEVGYVGGAYGIRGWIKVQPHGDAEALLHAGTWWLKPAAGAPTVSSDWRVLPVGTS 100
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ R DF +DEF+ DL + Q
Sbjct: 101 REHSGSVVAGSPAVPDRNVAEALRGCAVWISRADFPAP--ADDEFYWVDLIGSTVVNEQQ 158
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 159 ESLGTVAGLLDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|304399180|ref|ZP_07381047.1| 16S rRNA processing protein RimM [Pantoea sp. aB]
gi|304353234|gb|EFM17614.1| 16S rRNA processing protein RimM [Pantoea sp. aB]
Length = 182
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G +G+ G + + S + + Y + + +++ + N+ I
Sbjct: 12 NPIVLGKMGAAYGIRGWLKVFSSTEDAESIFNYQPWFIQRAGKWQQVELEGWKHHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GI++ +A++L + ++ LEE +++ DL + + +G G+V
Sbjct: 72 IKVKGIEDRDAAAQLTNCEIQVDSTQLPS--LEEGDYYWKDLMGCQVVNLEGYEMGKVID 129
Query: 122 VYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K + LIPF + +V+L I +D
Sbjct: 130 MMETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIRKVDLSTGVIEVDWDPG 181
>gi|89075048|ref|ZP_01161489.1| 16S rRNA-processing protein [Photobacterium sp. SKA34]
gi|89049135|gb|EAR54700.1| 16S rRNA-processing protein [Photobacterium sp. SKA34]
Length = 177
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
K +++ +G T+G+ G + + SY + Y + + +E+ + R
Sbjct: 3 SKNQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEIHVESWKRHG 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +A G+D A + ++ + L ++EF+ +L M F +G G
Sbjct: 63 QGLVAKLEGMDIREDAQVFTNAEVAVLAEQLPA--LSDEEFYWRELFGMSVFTTEGYDLG 120
Query: 118 QVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILID 163
+V + G+ +L +K +K LIPF V++ ++ +I +D
Sbjct: 121 KVTDILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKLIDRTAQRIEVD 172
>gi|90961609|ref|YP_535525.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227890696|ref|ZP_04008501.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|301299256|ref|ZP_07205542.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|122449137|sp|Q1WU93|RIMM_LACS1 RecName: Full=Ribosome maturation factor rimM
gi|90820803|gb|ABD99442.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227867634|gb|EEJ75055.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|300214423|gb|ADJ78839.1| Ribosome maturation factor rimM [Lactobacillus salivarius CECT
5713]
gi|300853100|gb|EFK80698.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 168
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ I THG+ GE+ I S + P D + Y+ + I +
Sbjct: 2 NYYEVGKIVNTHGIKGELKIISKTDFPEDRFKPGNILYIRDNGKINSYEIKSHRTHKQFE 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF G++NI+ L+ L + E L + +++ + ++ F Y G +
Sbjct: 62 MITFKGLENINLVENLKGKILEISEEQ--QENLSDGNYYHHQIIGLDVFSEDNNYIGVIK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA + +K L+P K + +++L++NK++I+ +
Sbjct: 120 EIMSPGANDVWVVKRKGSSDLLLPAIKDVIKKIDLEQNKVIIELLDGL 167
>gi|20807906|ref|NP_623077.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter
tengcongensis MB4]
gi|22001901|sp|Q8R9X3|RIMM_THETN RecName: Full=Ribosome maturation factor rimM
gi|20516473|gb|AAM24681.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter
tengcongensis MB4]
Length = 168
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR-ELRILKMYRKNK 58
+ + + + HG+ GE+ + N P +V D + I + +K
Sbjct: 1 MADYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYIWVFDEKDIPCKYEIENVKITSK 60
Query: 59 R-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ GID+ + A +L+ L L ++ +LEEDE+F TDL M+ + +G+ G
Sbjct: 61 GMVLLKLKGIDSRNDAEKLKGLFLKVDAEN--ALKLEEDEYFITDLIGMKVYTEEGELIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ V GA + +K E+ L+P K + +V+++ +++ +
Sbjct: 119 TLEEVLQTGANDVYVVK-AKEREVLLPAIKEVIKKVDVEGKVMIVRLLEGL 168
>gi|261867111|ref|YP_003255033.1| 16S rRNA-processing protein RimM [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412443|gb|ACX81814.1| 16S rRNA processing protein RimM [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 175
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFS 65
+ +G+T+G+ G + I S + Y + + N I
Sbjct: 9 VGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGQWQPTEPENWRHHNHELIVKLK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D+ +A L ++++ F +L+E +++ DL + G G V +
Sbjct: 69 GVDDREAAQILANVEIGVDLSVFP--QLKEGDYYWHDLIGCTVVNLAGYAMGTVTEMMET 126
Query: 126 GAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 127 GSNDVLVVKANVKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|330807706|ref|YP_004352168.1| 16S rRNA processing protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375814|gb|AEA67164.1| Putative 16S rRNA processing protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 178
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRF 60
D L+++ I + HG+ GEV + S+ + +L Y ++ +++ ++ +K
Sbjct: 9 DDLIVVGKIYSVHGVRGEVKVYSFTDPIKNLLDYKTWTLKREGSVKQVELVSGRGNDKFL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A +D+ A L ++ R F EL + E++ L ++ D G+ G++
Sbjct: 69 VAKLKDLDDREEARLLAGYEICVPRNLFP--ELTDGEYYWYQLVGLKVIDHLGQLLGKID 126
Query: 121 GVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ +K ++ L+P+T+ VL V+L ++ ++
Sbjct: 127 HLLETGSNDVMVVKPCVGSLDDRERLLPYTEQCVLAVDLAAGEMKVE 173
>gi|312622770|ref|YP_004024383.1| 16S rRNA processing protein rimm [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203237|gb|ADQ46564.1| 16S rRNA processing protein RimM [Caldicellulosiruptor
kronotskyensis 2002]
Length = 169
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSND-NRELRILKMYRKNKRF 60
+ K + + I T GL GEV + + + YVL ++ + +L I + K+
Sbjct: 1 MYKYLQVGKIVNTFGLKGEVKVIPLTDEVDRFSELEYVLLEDNLSTKLTIERYRVKDNVV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I I A +L++ + +R+ K +L +D +F D+ +E +D G+ G++
Sbjct: 61 IIKFKEISCIDEAQKLKNKYIVIERERAK--KLPKDAYFICDIIGLEVYDLDGRKLGRIK 118
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + + +K LIP K V EVN++E + I + L+
Sbjct: 119 DVLKTGSNDVYICDSYIGKKDILIPALKEIVKEVNIEEGYMKIKVVEGLLD 169
>gi|325579370|ref|ZP_08149262.1| 16S rRNA processing protein RimM [Haemophilus parainfluenzae ATCC
33392]
gi|301154850|emb|CBW14313.1| 16S rRNA processing protein [Haemophilus parainfluenzae T3T1]
gi|325159195|gb|EGC71331.1| 16S rRNA processing protein RimM [Haemophilus parainfluenzae ATCC
33392]
Length = 175
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQPTELENWRHHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDREAAQTLANVEIGVDLSVFP--ELEEGDYYWHDLIGCSVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|238790730|ref|ZP_04634491.1| Ribosome maturation factor rimM [Yersinia frederiksenii ATCC 33641]
gi|238721171|gb|EEQ12850.1| Ribosome maturation factor rimM [Yersinia frederiksenii ATCC 33641]
Length = 186
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
D+ +++ +G+T+G+ G + + S N + Y + + + + + R ++
Sbjct: 14 PDQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ + L +D+++ DL + G G++
Sbjct: 74 LIIKVKGVDDRDAANLLTNCEIVVDSKQLPT--LGDDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 185
>gi|111023496|ref|YP_706468.1| 16S rRNA-processing protein [Rhodococcus jostii RHA1]
gi|122955113|sp|Q0S2C6|RIMM_RHOSR RecName: Full=Ribosome maturation factor rimM
gi|110823026|gb|ABG98310.1| 16S rRNA processing protein [Rhodococcus jostii RHA1]
Length = 183
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ + P D VL + RE + + R
Sbjct: 3 LVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQTVSTYTVEAARDHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + +A LR + + + + DEF++ +LE + G G V
Sbjct: 63 LLRLEGVSDRTAADALRGTLFVIDSAELEPSD-DPDEFYDHELEGLSVRLADGTEVGTVI 121
Query: 121 GVYNFGAGSILEIKNTMEK--TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L I+ ++ L+PF V V++ + LIDP L+
Sbjct: 122 EVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDPPEGLLD 173
>gi|293390719|ref|ZP_06635053.1| 16S rRNA processing protein RimM [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951253|gb|EFE01372.1| 16S rRNA processing protein RimM [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 175
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFS 65
+ +G+T+G+ G + I S + Y + R N I
Sbjct: 9 VGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGQWRPTEPENWRHHNHELIVKLK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D+ +A L ++++ F +L+E +++ DL + G G V +
Sbjct: 69 GVDDREAAQILANVEIGVDLSVFP--QLKEGDYYWHDLIGCTVVNLAGYAMGTVTEMMET 126
Query: 126 GAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 127 GSNDVLVVKTNVKDAFGKQERLIPFLYEQVVKRVDLATKMITVDWDAG 174
>gi|307244387|ref|ZP_07526498.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
gi|306492206|gb|EFM64248.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
Length = 172
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYAN--NPIDLNRYVLYSNDNRELRILK--MYRK 56
M + + I TT GL GE+ I + + + Y ND + +++ +
Sbjct: 1 MTDKLEYFKLGKIVTTRGLKGEIKIYPHTDKIDRFKDLEYFFIGNDREKKYLVERAVTAS 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N + G D I S L ++ R+ +L+EDEFF D+ M+ +G+
Sbjct: 61 NNSIVVKLKGYDTIESVQALIGKFIFVDRE--MSYQLDEDEFFIADMIGMDVETIEGQKI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + A + +K K +LIP T V +++ + + I PI L+
Sbjct: 119 GKLVDVLQYAANDVYVVKGEDSKEYLIPATYEIVPDIDTENRLMKIKPIPGLLD 172
>gi|187778961|ref|ZP_02995434.1| hypothetical protein CLOSPO_02556 [Clostridium sporogenes ATCC
15579]
gi|187772586|gb|EDU36388.1| hypothetical protein CLOSPO_02556 [Clostridium sporogenes ATCC
15579]
Length = 164
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I THG+ GEV + ++ + D E +I+ + +
Sbjct: 1 MKEFLAVGEIINTHGIKGEVKVYPLTDDMKRFKKLKEVFIDGEERKIVSCKLQPNNVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A++ R L KR++ +L + +F DL E D +G+ GQ+ V
Sbjct: 61 IDGIDSIEEANKYRKKLLEIKREN--SVKLPKGSYFIADLMECRVIDEEGREIGQISDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + E+K + L+P K V ++++ + I P+
Sbjct: 119 KTGSNDVYEVKGKI--EVLVPAIKDIVTNIDIENKTVTIKPLE 159
>gi|322382563|ref|ZP_08056443.1| 16S rRNA processing-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153479|gb|EFX45884.1| 16S rRNA processing-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 169
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 8/170 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKNKRF 60
+ + I THGL GE+ I + + + V + I F
Sbjct: 1 MYTVGAIANTHGLRGELKIIPHTDFAEERFAPGSKLMAVDLKGKEMPVEIASARLHKNAF 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F +I+ L+ L + + ++LEE E++ ++ F G+ G +
Sbjct: 61 IVKFKQFHHINEVEPLKGGLLKVEEKYL--QKLEEGEYYFHEILGCTAFTMDGEELGTIK 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + + K L+P+ + V EV++ + + + L+
Sbjct: 119 DILTPGANHVWVVSGPKYKQILLPYIEDVVKEVDVDNKIVRVKLLEGLLD 168
>gi|147678055|ref|YP_001212270.1| RimM protein, required for 16S rRNA processing [Pelotomaculum
thermopropionicum SI]
gi|189040846|sp|A5D1J5|RIMM_PELTS RecName: Full=Ribosome maturation factor rimM
gi|146274152|dbj|BAF59901.1| RimM protein, required for 16S rRNA processing [Pelotomaculum
thermopropionicum SI]
Length = 170
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 7/168 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNREL-RILKMYRKNKRF 60
+ + + I T G G V + + P R + R + ++Y
Sbjct: 3 ESYIRIGKILKTQGNRGAVRVLPLTDYPERFKNMSRVQVSLKGFRTFFTVGEVYHHKNFI 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I+++ +A +L+ L R + L ED F+ D+ ++ +D G+ G+V
Sbjct: 63 IIKFKEIESMAAAEKLKGAFLEVGRDEL--VPLPEDRFYIFDIIGLKVYDTGGRNLGRVT 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + + +T K LIP K V VNL E K++++
Sbjct: 121 DVLQTGANDVYVV-DTGGKPLLIPALKQVVKSVNLTEGKMVVELPEGL 167
>gi|114330464|ref|YP_746686.1| 16S rRNA processing protein RimM [Nitrosomonas eutropha C91]
gi|122314522|sp|Q0AIV0|RIMM_NITEC RecName: Full=Ribosome maturation factor rimM
gi|114307478|gb|ABI58721.1| 16S rRNA processing protein RimM [Nitrosomonas eutropha C91]
Length = 168
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRIL---KMYRKNKRFI 61
+V++ + HG+ G++ + + + L Y ++ SND + +I+ + I
Sbjct: 1 MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE---FFNTDLEEMETFDRQGKYWGQ 118
T + +AS L+ + R +L ED ++ +DL + + QG++ G
Sbjct: 61 ITLEEYSDRTNASGLKGWLIAVPRSQLP--QLSEDGKEGYYWSDLIGISVVNTQGEFIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G++ GA +L I+ K LIPF V +V+++ +I++D
Sbjct: 119 VAGLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQIMVD 163
>gi|238758268|ref|ZP_04619447.1| Ribosome maturation factor rimM [Yersinia aldovae ATCC 35236]
gi|238703598|gb|EEP96136.1| Ribosome maturation factor rimM [Yersinia aldovae ATCC 35236]
Length = 182
Score = 163 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ +++ +G+T+G+ G + + S N + Y + + + + R ++
Sbjct: 10 PEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I +D+ +A+ L + ++ + LEED+++ DL + G G++
Sbjct: 70 LIIKVKDVDDRDAANLLTNCEIIVDSKQLPT--LEEDDYYWKDLMGCQVVTTTGYELGKI 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 128 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 181
>gi|90580368|ref|ZP_01236175.1| 16S rRNA-processing protein [Vibrio angustum S14]
gi|90438670|gb|EAS63854.1| 16S rRNA-processing protein [Vibrio angustum S14]
Length = 177
Score = 163 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
K +++ +G T+G+ G + + SY + Y + + +E+ + R
Sbjct: 3 NKNQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEIHVESWKRHG 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +A G+D A + ++ + L ++EF+ +L M F +G G
Sbjct: 63 QGLVAKLEGMDIREDAQVFTNAEVAVLAEQLPA--LSDEEFYWRELFGMSVFTTEGYDLG 120
Query: 118 QVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILID 163
+V + G+ +L +K +K LIPF V++ ++ +I +D
Sbjct: 121 KVTDILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKLIDRTAQRIEVD 172
>gi|258508636|ref|YP_003171387.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus GG]
gi|258539813|ref|YP_003174312.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus Lc 705]
gi|257148563|emb|CAR87536.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus GG]
gi|257151489|emb|CAR90461.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus Lc 705]
Length = 172
Score = 163 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKR 59
+ + TI THG+ GEV + + P N+ + + L I + +
Sbjct: 1 MPDYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF +I+ + KL K LEE ++ D+ + D G+ G+V
Sbjct: 61 TMLTFKDYTDINQVLPFKGKKLQVTEAALK--PLEEGSYYYKDIIGLTVIDEHGQTLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G + I + L+PF K V ++L++ + + +++
Sbjct: 119 SEILSPGPNDVWVIPRPGKSELLLPFLKSVVQTIDLEQKEAHVIVPEGLIDDA 171
>gi|292900326|ref|YP_003539695.1| 16S_rRNA processing protein [Erwinia amylovora ATCC 49946]
gi|291200174|emb|CBJ47302.1| 16S rRNA processing protein [Erwinia amylovora ATCC 49946]
Length = 185
Score = 163 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+ +G+ G + + S + + Y + + + + + R N+ I
Sbjct: 15 NPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A L + ++ + +L+ +++ DL + +G G+V
Sbjct: 75 IKVKGIDDRDAAGLLTNCEIVVDSEQLP--QLDNGDYYWKDLMGCQVVTVEGYELGKVID 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ + LIPF + V+L I +D
Sbjct: 133 MMETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKNVDLTTRTIKVDWDPG 184
>gi|238693263|sp|B4RXC6|RIMM_ALTMD RecName: Full=Ribosome maturation factor rimM
Length = 173
Score = 163 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 9/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-SNDNRELRILKMYRKNKR 59
M V++ IG +G+ G V I+SY P + Y + + +E +I + K
Sbjct: 1 MSLASDKVIVGKIGAPYGVKGWVKINSYTETPEGIFEYAPWFIGEEKEYQIDQWRPHGKS 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G+D+ A +++L + D L ++ + +L M+ QG G V
Sbjct: 61 LVAKIVGVDSRDDAERIKNLDININASQLPD--LGDEGVYWRELTGMKVVTTQGYDLGVV 118
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
V+N GA ++ +K + K L+PF V EV+ + I +D
Sbjct: 119 KEVFNTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKVIKVDWDPG 172
>gi|56479500|ref|YP_161089.1| 16S rRNA processing protein [Aromatoleum aromaticum EbN1]
gi|67461302|sp|Q5NXM6|RIMM_AZOSE RecName: Full=Ribosome maturation factor rimM
gi|56315543|emb|CAI10188.1| 16S rRNA processing protein [Aromatoleum aromaticum EbN1]
Length = 168
Score = 163 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSND------NRELRILKMYRKN 57
++++ I G+ G V + + ++P+ ++ ++ L + + + +
Sbjct: 1 MIVLGRIVAPFGVKGWVKVHPFGDDPLSWGEMPQWWLADDADAPESAWQPVTLAGFKEHG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A F G D+ ++A L+ + A R+ ++ DE++ DL + ++ + G
Sbjct: 61 AGLVAAFVGHDDRNAAEALQGRFIGAPREALPKPDV--DEYYWGDLIGLAVVNQADEALG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA +L++++ + LIPF VL+V+L I +D
Sbjct: 119 TVEALMSTGAHDVLQVRDGDD-ERLIPFVAAYVLDVDLAARTIRVD 163
>gi|330446981|ref|ZP_08310632.1| 16S rRNA processing protein RimM [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491172|dbj|GAA05129.1| 16S rRNA processing protein RimM [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 177
Score = 163 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
K +++ +G T+G+ G + + SY + Y + + +E + R
Sbjct: 3 NKNQDHIIVGKLGATYGIKGWLKVFSYTEQSESIFSYTPWLIKVKGEWKEFHVESWKRHG 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +A G+D A + ++ + L ++EF+ +L M +G G
Sbjct: 63 QGLVAKLEGMDIREEAQVFTNAEVAVLAEQLPA--LSDEEFYWRELFGMSVVTTEGYDLG 120
Query: 118 QVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKFAVLE-VNLQENKILID 163
+V + G+ +L +K +K LIPF V++ ++ +I +D
Sbjct: 121 KVTDILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKLIDRTAQRIEVD 172
>gi|255524255|ref|ZP_05391214.1| 16S rRNA processing protein RimM [Clostridium carboxidivorans P7]
gi|296185377|ref|ZP_06853787.1| 16S rRNA processing protein RimM [Clostridium carboxidivorans P7]
gi|255512080|gb|EET88361.1| 16S rRNA processing protein RimM [Clostridium carboxidivorans P7]
gi|296050211|gb|EFG89635.1| 16S rRNA processing protein RimM [Clostridium carboxidivorans P7]
Length = 162
Score = 163 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 4/163 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + V + I THG+ GE+ I ++ + + E ++ + + I
Sbjct: 1 MKQFVTVGQIINTHGIKGELKIYPLTDDLRRFRKLQKVYVEGVEKNVVWCKLQTDKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID++ A + ++ L R+D +L E +F D+ G +G++ V
Sbjct: 61 IEGIDSVEEAMKYKEKYLDVSRED--AVKLPEGSYFIADIIGCSVVGENGAEYGKIADVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + IK K LIP K V++++++ +I+I P+
Sbjct: 119 KTGSNDVYWIK--EGKELLIPALKDIVIDMDIENKRIVIKPVE 159
>gi|292487303|ref|YP_003530175.1| 16S rRNA-processing protein rimM [Erwinia amylovora CFBP1430]
gi|291552722|emb|CBA19767.1| 16S rRNA-processing protein rimM [Erwinia amylovora CFBP1430]
gi|312171411|emb|CBX79670.1| 16S rRNA-processing protein rimM [Erwinia amylovora ATCC BAA-2158]
Length = 182
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+ +G+ G + + S + + Y + + + + + R N+ I
Sbjct: 12 NPLILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A L + ++ + +L+ +++ DL + +G G+V
Sbjct: 72 IKVKGIDDRDAAGLLTNCEIVVDSEQLP--QLDNGDYYWKDLMGCQVVTVEGYELGKVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ + LIPF + V+L I +D
Sbjct: 130 MMETGSNDVLVVKANLKDAFGVQERLIPFLDEQVIKNVDLTTRTIKVDWDPG 181
>gi|227545804|ref|ZP_03975853.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|312133333|ref|YP_004000672.1| rimm [Bifidobacterium longum subsp. longum BBMN68]
gi|322688487|ref|YP_004208221.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. infantis
157F]
gi|322690497|ref|YP_004220067.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. longum
JCM 1217]
gi|227213920|gb|EEI81759.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|311772552|gb|ADQ02040.1| RimM [Bifidobacterium longum subsp. longum BBMN68]
gi|320455353|dbj|BAJ65975.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459823|dbj|BAJ70443.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 207
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
G+D+ ++A L ++LY + D +D LE DE++ DL +E + G+
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
G+V V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVVDVIDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 192
Query: 161 LIDPIAAGLNNTTM 174
+DP + M
Sbjct: 193 TLDPPGGLIPGCGM 206
>gi|300722262|ref|YP_003711546.1| 16S rRNA processing protein [Xenorhabdus nematophila ATCC 19061]
gi|297628763|emb|CBJ89341.1| 16S rRNA processing protein [Xenorhabdus nematophila ATCC 19061]
Length = 182
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+ +G+ G + + S + D+ Y + S + + + N+ +
Sbjct: 12 EPIVLGKLGSAYGIRGWLRVFSSTEHTEDIFEYQPWFIQRSGQWQHIELEAWKHHNQDIV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID+ +A+ + ++ ELE +++ DL + + G G +
Sbjct: 72 VKIKDIDDRDAANLFTNCEVMVDSSQLP--ELEAGDYYWKDLIGCQVMNTAGYNLGTIDD 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGVKERLVPFLDGQVIKKVDLATKTIEVDWDPG 181
>gi|237667792|ref|ZP_04527776.1| 16S rRNA processing protein RimM [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|237656140|gb|EEP53696.1| 16S rRNA processing protein RimM [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 166
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 4/167 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
KL + I THG+ GEV + + R E+ IL + + R I
Sbjct: 4 KLFKIGQIINTHGIKGEVKVYPLTEDVNKFKRLKTVLVGGVEMNILGVKFQKDRVILKIE 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID ++ A + + R+ K+ EL ED ++ +DL+E +D GK G++ V +
Sbjct: 64 GIDTMNDAETYKQKYIEIPRE--KEPELPEDTYYVSDLKECIVYDTDGKELGKIFDVIST 121
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ IK K LIP + VL +++ E KI+I P+ +
Sbjct: 122 RNNDVYWIKEP--KELLIPVLRDIVLSIDINEKKIVIRPVGEWQDED 166
>gi|160933332|ref|ZP_02080720.1| hypothetical protein CLOLEP_02177 [Clostridium leptum DSM 753]
gi|156867209|gb|EDO60581.1| hypothetical protein CLOLEP_02177 [Clostridium leptum DSM 753]
Length = 171
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNK 58
M+K + I T GL GE+ +D + ++ L R + + +EL+++ + +
Sbjct: 1 MLKP--YLEAGKITGTQGLRGEIRVDPWCDSAEALCRLKRLYFEEGKQELKVVSARTQKR 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
I G+D+I A LR+ LYA RQDF +LE +F DL ++ D G+ +G
Sbjct: 59 MAILKLEGVDSIEQADLLRNRVLYASRQDF---KLEPGRYFIQDLLGVKAVDADSGRDYG 115
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V V GA + EI K +L+P V+E+ L+E + I PI ++
Sbjct: 116 AVTDVLKTGANDVYEITGDDGKAYLLPAIPMTVIEIRLEEGLMRIRPIEGIFDHE 170
>gi|327183808|gb|AEA32255.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1118]
Length = 186
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 21 VAKILTTHGLNGEVKVNVITDFPEDRFAEGMQLALKADTDRILTIKKSRPFKQFWLLQFD 80
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 81 EVNDIDEAEKLRGQILVVSEDN--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 138
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 139 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVPNKKVYVELMEGLRDED 186
>gi|326791388|ref|YP_004309209.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
gi|326542152|gb|ADZ84011.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
Length = 173
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRF 60
++++ ++ I THG+ GE+ + ++P L + I +
Sbjct: 1 MNEMFIVGKIVNTHGVKGELKVMPSTDDPTRFEQLKEIYVERKKLESYEIQSVRYHKGMV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQV 119
+ GID++ +A + L R+D LEEDE++ DL M+ + + Y G++
Sbjct: 61 LLKLKGIDDMTTAELFKGALLKIDRKD--SLPLEEDEYYIADLYGMQVYTYDEERYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILID 163
V G+ + ++ K L+P K + V++++NK+ +
Sbjct: 119 VDVIYTGSNDVYAVRKEDRAKDLLLPAIKQVIKSVDVKQNKMHVT 163
>gi|259909408|ref|YP_002649764.1| 16S rRNA-processing protein RimM [Erwinia pyrifoliae Ep1/96]
gi|224965030|emb|CAX56561.1| 16S rRNA-processing protein [Erwinia pyrifoliae Ep1/96]
Length = 182
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+ +G+ G + + S + + Y + + + + + R N+ I
Sbjct: 14 LILGKMGSAYGIRGWLKVFSSTEDAESIFDYQPWFIQRAGQWQLVELEGWKRHNQDMIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+ +A L + ++ + EL+ +++ DL + +G G+V +
Sbjct: 74 VKGIDDRDAAGLLTNCEIVVDSEQLP--ELDNGDYYWKDLMGCQVVTVEGYELGKVIDMM 131
Query: 124 NFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+ +L +K + LIPF + V+L I +D
Sbjct: 132 ETGSNDVLVVKANLKDAFGAQERLIPFLDEQVIKNVDLTTRTIKVDWDPG 181
>gi|157369098|ref|YP_001477087.1| 16S rRNA-processing protein RimM [Serratia proteamaculans 568]
gi|166985970|sp|A8GA19|RIMM_SERP5 RecName: Full=Ribosome maturation factor rimM
gi|157320862|gb|ABV39959.1| 16S rRNA processing protein RimM [Serratia proteamaculans 568]
Length = 182
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ +++ +G+T+G+ G + + S N + Y + S + + + R ++
Sbjct: 10 PKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I GID+ +A+ L + ++ + LE D+++ DL + G G+V
Sbjct: 70 LIIKVKGIDDRDAANLLTNCEIVVDSEQLP--PLEGDDYYWKDLMGCQVVTTSGYELGKV 127
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ ++ ++ K L+PF + +V+L I D
Sbjct: 128 IDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLTARVIEADWDPG 181
>gi|330839280|ref|YP_004413860.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
gi|329747044|gb|AEC00401.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
Length = 172
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D V++ G HGL GEV + + P R + ++ + + T
Sbjct: 6 DGRVVIGKAGAPHGLRGEVRVIPLTDFPERFESLREVFIGERVFHVEHVHYHRQFVLLTL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A++L L R+D L E EF+ D+ + D G+ G+V V
Sbjct: 66 AECTSREAAAKLTGELLRVARED--AAPLAEGEFYTFDIIGLAVLDMAGERLGEVTNVLK 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ + +K T L+P K V E+++ + +D +
Sbjct: 124 TGSNDVYVVKKTDGAELLVPALKKVVREIDIAGGFLRVDLQEELED 169
>gi|254522928|ref|ZP_05134983.1| 16S rRNA processing protein RimM [Stenotrophomonas sp. SKA14]
gi|219720519|gb|EED39044.1| 16S rRNA processing protein RimM [Stenotrophomonas sp. SKA14]
Length = 173
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M +++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 4 MKDIERRILLGRVVGAFGVRGEIKLESWTEPRSAIFRYQPWIVRSPSGVETTIEGVRGRD 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A F G+++ + + ++Y R + DE++ DLE ++ +G
Sbjct: 64 SGKHLVARFPGVEDRDTVEAMHGTEVYVARSALPPPK--PDEYYWVDLEGLDVKTTEGVA 121
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
GQV +++ GA ++ ++ ++ +IPF V V+ + N +++D
Sbjct: 122 LGQVSHLFSTGANDVVVVR--GDRERMIPFVQPDFVKSVDFEANLVVVD 168
>gi|209573735|sp|A9WP46|RIMM_RENSM RecName: Full=Ribosome maturation factor rimM
Length = 175
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 5/167 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIAT 63
V + IG HG+ GEV ++ + P + + L + +
Sbjct: 3 VHVGRIGKPHGIRGEVTVEVLTDTPQERFSAGAVFSTEPTSAGPLTVETARWNKDILLLG 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F +++ + A LR +L + +E E D ++ +L +E + G+V +
Sbjct: 63 FEEVNDRNRAETLRGTRLIFETDSVASDESESDSWYEHELIGLEAR-VGDQTVGKVSALN 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A +L I + L+PF V EV++ I + P +
Sbjct: 122 PMPAQDLLVITTAAGEEVLVPFVAEIVPEVDIAAGFIRLVPPGGLFD 168
>gi|226328728|ref|ZP_03804246.1| hypothetical protein PROPEN_02623 [Proteus penneri ATCC 35198]
gi|225201914|gb|EEG84268.1| hypothetical protein PROPEN_02623 [Proteus penneri ATCC 35198]
Length = 181
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 13/172 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ ++M +G+ +G+ G + + S + ++ Y + + I N+ I
Sbjct: 12 EPIVMGKLGSPYGIRGWLRVFSSTEHAENIFEYQPWFIQRHGQWETIEIESWKHHNQDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A+ L + ++ + E E++ DL +G G V
Sbjct: 72 VKLKGIDDRDAANFLTNFEIVVNASQLPEL---EGEYYWKDLMGCHVETDKGYDLGVVTD 128
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ L+PF + +V+L KI++D
Sbjct: 129 MMETGSNDVMVIKANLKDAFGIGERLVPFLDGQVIKKVDLSAKKIIVDWDPG 180
>gi|291299690|ref|YP_003510968.1| 16S rRNA processing protein RimM [Stackebrandtia nassauensis DSM
44728]
gi|290568910|gb|ADD41875.1| 16S rRNA processing protein RimM [Stackebrandtia nassauensis DSM
44728]
Length = 169
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR--ELRILKMYRKNKRFIAT 63
+++ I +HG+ G++ ++ + P VL+++ R + + ++ +R + T
Sbjct: 3 LVVGRIVRSHGVRGDLIVEVRTDEPEQRFAGGSVLHTDPPRFGPVTVERVRWYQERLLLT 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + +A +R + L +D + E + DEF + DL + + G G V V
Sbjct: 63 LEGVADRDAAEAMRGVALTVDSEDVEVPE-DPDEFRDLDLVGLSVVEESGAEIGTVVRVE 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A +L + LIPF + V V++ +I++ L+
Sbjct: 122 HAPAHDLLVVDRPGANQALIPFIQAMVPTVDVAGGRIVVTLPEGLLD 168
>gi|30995359|ref|NP_438372.2| 16S rRNA-processing protein RimM [Haemophilus influenzae Rd KW20]
gi|145631330|ref|ZP_01787102.1| tRNA (guanine-N(1)-)-methyltransferase [Haemophilus influenzae
R3021]
gi|148825533|ref|YP_001290286.1| 16S rRNA-processing protein RimM [Haemophilus influenzae PittEE]
gi|148827341|ref|YP_001292094.1| 16S rRNA-processing protein RimM [Haemophilus influenzae PittGG]
gi|229847378|ref|ZP_04467479.1| 16S rRNA-processing protein [Haemophilus influenzae 7P49H1]
gi|319775927|ref|YP_004138415.1| 16S rRNA processing protein [Haemophilus influenzae F3047]
gi|319898168|ref|YP_004136365.1| 16S rRNA processing protein [Haemophilus influenzae F3031]
gi|329123788|ref|ZP_08252346.1| 16S rRNA processing protein RimM [Haemophilus aegyptius ATCC 11116]
gi|166226444|sp|A5UAV2|RIMM_HAEIE RecName: Full=Ribosome maturation factor rimM
gi|166226445|sp|A5UG05|RIMM_HAEIG RecName: Full=Ribosome maturation factor rimM
gi|144983115|gb|EDJ90615.1| tRNA (guanine-N(1)-)-methyltransferase [Haemophilus influenzae
R3021]
gi|148715693|gb|ABQ97903.1| 16S rRNA-processing protein [Haemophilus influenzae PittEE]
gi|148718583|gb|ABQ99710.1| 16S rRNA-processing protein [Haemophilus influenzae PittGG]
gi|229809704|gb|EEP45429.1| 16S rRNA-processing protein [Haemophilus influenzae 7P49H1]
gi|301168855|emb|CBW28446.1| 16S rRNA processing protein [Haemophilus influenzae 10810]
gi|309972675|gb|ADO95876.1| 16S rRNA processing protein RimM [Haemophilus influenzae R2846]
gi|317433674|emb|CBY82061.1| 16S rRNA processing protein [Haemophilus influenzae F3031]
gi|317450518|emb|CBY86735.1| 16S rRNA processing protein [Haemophilus influenzae F3047]
gi|327469275|gb|EGF14746.1| 16S rRNA processing protein RimM [Haemophilus aegyptius ATCC 11116]
Length = 175
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDREAAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|260886931|ref|ZP_05898194.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
gi|260862993|gb|EEX77493.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
Length = 169
Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 2/166 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D V++ G HGL GEV + + P R + ++ + + T
Sbjct: 3 DGRVVIGKAGAPHGLRGEVRVIPLTDFPERFESLREVFIGERVFHVEHVHYHRQFVLLTL 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A++L L R+D L E EF+ D+ + D G+ G+V V
Sbjct: 63 AECTSREAAAKLTGELLRVARED--AAPLAEGEFYTFDIIGLAVLDMAGERLGEVTNVLK 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ + +K T L+P K V E+++ + +D +
Sbjct: 121 TGSNDVYVVKKTDGAELLVPALKKVVREIDIAGGFLRVDLQEELED 166
>gi|299066904|emb|CBJ38099.1| 16S rRNA processing protein [Ralstonia solanacearum CMR15]
Length = 213
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKM 53
D LV + +G +G+ G + + + + L + L S+D R L I
Sbjct: 41 PDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHAGTWWLKPAAGAPAVSSDWRVLPIGTS 100
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ +R DF +DEF+ DL + Q
Sbjct: 101 REHSGSVVAGSPAVPDRNVAEALRGCTVWVRRADFPTP--ADDEFYWVDLIGSTVVNEQQ 158
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 159 ETLGTVAGLIDNGAHQILRIVDESGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|281602017|gb|ADA75001.1| 16S rRNA-processing protein rimM [Shigella flexneri 2002017]
Length = 164
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 14 GTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDN 69
G+++G+ G + + S + + Y + + +++++ N+ I G+D+
Sbjct: 2 GSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDD 61
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+A+ L + ++ +LEE +++ DL + +G G+V + G+
Sbjct: 62 RDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSND 119
Query: 130 ILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+L IK ++ K L+PF + +V+L I +D
Sbjct: 120 VLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 163
>gi|88706919|ref|ZP_01104618.1| 16S rRNA processing protein rimM [Congregibacter litoralis KT71]
gi|88698841|gb|EAQ95961.1| 16S rRNA processing protein rimM [Congregibacter litoralis KT71]
Length = 179
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 1 MVKLDK-LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYR 55
M + ++L I +G+ G V + + + P + + VL + ++
Sbjct: 1 MNTPENQMLLAGKITGAYGIKGWVKVQVFTDPPDNFFAFRHHQVLRRGQLETIELVDGRS 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK- 114
+ K ++A G+DN A LR +++ + + L DE++ L+ ++ + G+
Sbjct: 61 QGKGWVARVVGVDNRTDAELLRGTEIWVPQSELPV--LASDEYYWHQLQGLQVWCEHGEQ 118
Query: 115 --YWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
G+V + GA +L ++++ + LIP+ VL V+ + + ++
Sbjct: 119 RLLLGEVDHLLETGANDVLVLRSSEGSIDERERLIPYLPDSVVLAVDTEAGTMTVNWHPE 178
>gi|150390505|ref|YP_001320554.1| 16S rRNA processing protein RimM [Alkaliphilus metalliredigens
QYMF]
gi|166977501|sp|A6TRS7|RIMM_ALKMQ RecName: Full=Ribosome maturation factor rimM
gi|149950367|gb|ABR48895.1| 16S rRNA processing protein RimM [Alkaliphilus metalliredigens
QYMF]
Length = 168
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFI 61
+ K++ + I THG+ GE+ + S ++ +V + + I + + I
Sbjct: 1 MKKMLKVGQIVNTHGIKGELKVTSLSDYLERFEELEWVYIQGYDEKYYIGNIKYRPTTVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F G DNI+ + + + EL ED F+ DL ++ + + Y G++
Sbjct: 61 LSFEGYDNINIVEQFKGKYVLIDESQ--RRELPEDTFYKADLIGLDGYTVEEVYLGKLVD 118
Query: 122 VYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ + ++ K LIP K + E++L++ +I +DPI +
Sbjct: 119 IIQAGSNEVYVFRDKETNKDILIPAVKEFIPEISLEKKRITVDPIEGMIE 168
>gi|152978200|ref|YP_001343829.1| 16S rRNA-processing protein [Actinobacillus succinogenes 130Z]
gi|171704183|sp|A6VLP7|RIMM_ACTSZ RecName: Full=Ribosome maturation factor rimM
gi|150839923|gb|ABR73894.1| 16S rRNA processing protein RimM [Actinobacillus succinogenes 130Z]
Length = 175
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + N IA
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPAELESWKHHNHELIAKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+D+ +A L ++++ F +LEE +++ DL + + QG G V +
Sbjct: 68 KNVDDRDAAQALTNVEIGVDLSVFP--KLEEGDYYWHDLIGCQVVNLQGYTMGTVSEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVRANVKDAFGKQERLIPFLYEKVVKRVDLTTKTIEVDWDAG 174
>gi|260598987|ref|YP_003211558.1| 16S rRNA-processing protein RimM [Cronobacter turicensis z3032]
gi|260218164|emb|CBA33000.1| Ribosome maturation factor rimM [Cronobacter turicensis z3032]
Length = 169
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+ +G+ G + + S + + Y + + +++++ N+ I
Sbjct: 2 VLGKMGSCYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGQWQQVQLESWKHHNQDIIIKL 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A+ L + ++ D LEE +++ DL + +G G+V +
Sbjct: 62 KGVDDRDAANLLTNCEIVVDSSQLPD--LEEGDYYWKDLIGCQVVTTEGYTLGKVIDMME 119
Query: 125 FGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ K L+PF + +V+L I +D
Sbjct: 120 TGSNDVLVVKANLKDAFGIKERLLPFLDGQVIKKVDLATQTIEVDWDPG 168
>gi|82701704|ref|YP_411270.1| 16S rRNA processing protein RimM [Nitrosospira multiformis ATCC
25196]
gi|109893025|sp|Q2YBJ3|RIMM_NITMU RecName: Full=Ribosome maturation factor rimM
gi|82409769|gb|ABB73878.1| 16S rRNA processing protein RimM [Nitrosospira multiformis ATCC
25196]
Length = 168
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNR--ELRILKMYRKNKRFI 61
+V+M + + + G + + Y + +D + L S + + ++++ +
Sbjct: 1 MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A+ + +A+ L+ LK+ R+ E E+ ++ +DL + + QG+ G+V
Sbjct: 61 ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ GA +L+++N E LIPF +++V+L +I +D GL+
Sbjct: 121 GLLETGANDVLQVQNPEETERLIPFIDQVIIKVDLAAGRITVD---WGLD 167
>gi|145628510|ref|ZP_01784310.1| 16S rRNA-processing protein [Haemophilus influenzae 22.1-21]
gi|145639738|ref|ZP_01795340.1| 16S rRNA-processing protein [Haemophilus influenzae PittII]
gi|144978980|gb|EDJ88666.1| 16S rRNA-processing protein [Haemophilus influenzae 22.1-21]
gi|145271106|gb|EDK11021.1| 16S rRNA-processing protein [Haemophilus influenzae PittII]
gi|309750380|gb|ADO80364.1| 16S rRNA processing protein RimM [Haemophilus influenzae R2866]
Length = 175
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDREAAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|83745801|ref|ZP_00942858.1| RimM [Ralstonia solanacearum UW551]
gi|83727491|gb|EAP74612.1| RimM [Ralstonia solanacearum UW551]
Length = 213
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKM 53
D LV + +G +G+ G + + + + L + L S+D R L +
Sbjct: 41 PDDLVEVGYVGGAYGIRGWIKVQPHGDAEALLHAGTWWLKPAAGAPAVSSDWRVLPVGTS 100
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ R DF +DEF+ DL + Q
Sbjct: 101 REHSGSVVAGSPAVPDRNVAEALRGCAVWVSRADFPAP--ADDEFYWVDLIGSAVVNEQQ 158
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 159 ESLGTVAGLLDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|238926146|ref|ZP_04657906.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304437005|ref|ZP_07396968.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|238886036|gb|EEQ49674.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304369956|gb|EFM23618.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 169
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 2/163 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
D+ +++ IG HG+ G++ I + P + + L I + + + +
Sbjct: 9 PDERIVIGRIGAPHGVRGDLRIIPLTDFPERFAQMREVMAGDELLHITAVKPQGRNILMH 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F D +A L L R + L+E E++ D+ + D G G V V
Sbjct: 69 FREYDVRETAQRLTGRVLTVPRAE--AAPLDEGEYYVFDIVGLTVRDEDGNELGTVTDVL 126
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + +++ L+P + V ++ + +
Sbjct: 127 RTGSNDVYAVRDAEGHELLVPALRTVVQNIDTAGGCMTVRLPE 169
>gi|120555193|ref|YP_959544.1| 16S rRNA-processing protein RimM [Marinobacter aquaeolei VT8]
gi|171769205|sp|A1U2Y8|RIMM_MARAV RecName: Full=Ribosome maturation factor rimM
gi|120325042|gb|ABM19357.1| 16S rRNA processing protein RimM [Marinobacter aquaeolei VT8]
gi|302608134|emb|CBW44416.1| 16S rRNA processing protein [Marinobacter hydrocarbonoclasticus]
Length = 175
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 76/172 (44%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M + + ++ I + G+ G + + SY + + Y +L +R+ + R+
Sbjct: 1 MTQNSQETVIGRITSVFGVKGWLKVFSYTDPKDGILNYRDWTLLLDGKRIPIRLEEGRRQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + GID+ A ++ + EL E EF+ LE ++ F +G+
Sbjct: 61 GQGIVVRLKGIDDREVARTYCGAEIRVPTEQLP--ELPEGEFYWHQLEGLDVFTVEGECL 118
Query: 117 GQVCGVYNFGAGSILEIKNTME----KTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L + T + LIP+ V +V+L+ +++++D
Sbjct: 119 GKVHHLLETGSNDVLVVHATAGSIDQRERLIPYLPDQVVQQVDLKGSRMVVD 170
>gi|254492677|ref|ZP_05105848.1| 16S rRNA processing protein RimM [Methylophaga thiooxidans DMS010]
gi|224462198|gb|EEF78476.1| 16S rRNA processing protein RimM [Methylophaga thiooxydans DMS010]
Length = 172
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M ++ + + I G+ G V + S+ + ++ Y + E+++ + +
Sbjct: 1 MATSEEFIPVGKISGAFGIKGWVKVFSFTDPRTNILEYSPLFLSRQGEWIEIKVSGGHLQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + + + + L +L K++ + E EDEF+ +DL+ + + + +
Sbjct: 61 GKGVVMGIANVTDRDQVQPLIGSELAIKKEQLEPAE--EDEFYWSDLQGLTVMNLEDETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTME-KTFLIPFT-KFAVLEVNLQENKILID 163
GQV + GA +L +K E LIPF + V V+L + I +D
Sbjct: 119 GQVDHLLETGANDVLVVKAKGENTERLIPFVMEEIVKAVDLDKQLIQVD 167
>gi|294626998|ref|ZP_06705588.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598660|gb|EFF42807.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 170
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRI--LKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + + +E + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRTPSGQESVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|145641542|ref|ZP_01797120.1| 16S rRNA-processing protein [Haemophilus influenzae R3021]
gi|145273833|gb|EDK13701.1| 16S rRNA-processing protein [Haemophilus influenzae 22.4-21]
Length = 175
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDRETAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L +I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKRIEVDWDAG 174
>gi|28198019|ref|NP_778333.1| 16S rRNA-processing protein [Xylella fastidiosa Temecula1]
gi|182680645|ref|YP_001828805.1| 16S rRNA-processing protein RimM [Xylella fastidiosa M23]
gi|32129955|sp|Q87F55|RIMM_XYLFT RecName: Full=Ribosome maturation factor rimM
gi|238691052|sp|B2I6A7|RIMM_XYLF2 RecName: Full=Ribosome maturation factor rimM
gi|28056079|gb|AAO27982.1| 16S rRNA processing protein [Xylella fastidiosa Temecula1]
gi|182630755|gb|ACB91531.1| 16S rRNA processing protein RimM [Xylella fastidiosa M23]
gi|307579104|gb|ADN63073.1| 16S rRNA-processing protein RimM [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 170
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ + GL GE+ I+S+ + RY + + L + Y
Sbjct: 1 MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYE 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
KR IATF GI++ + + ++Y R DE++ DLE ++ +G
Sbjct: 61 TGKRLIATFPGINDRNGVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVV 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ GA ++ I E+ LIPF V V+ + +I++D
Sbjct: 119 LGSVSHLFSNGANDVIVIH--GERERLIPFVQPDYVKSVDFEAERIVVD 165
>gi|227833408|ref|YP_002835115.1| 16S rRNA processing protein [Corynebacterium aurimucosum ATCC
700975]
gi|262184396|ref|ZP_06043817.1| 16S rRNA-processing protein RimM [Corynebacterium aurimucosum ATCC
700975]
gi|227454424|gb|ACP33177.1| 16S rRNA processing protein [Corynebacterium aurimucosum ATCC
700975]
Length = 166
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR---ELRILKMYRKNKRFIA 62
+L+ + +HG+ GEV ++ ++P VL+ + EL I + R +
Sbjct: 3 LLIGRVVKSHGIKGEVSVEVTTDSPETRFAVGEVLHGTQGKKEHELTIAAVRAHKGRLLI 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF I + +A LR + +A+ D E+D F++ +LE + K G+V GV
Sbjct: 63 TFKEIPDRTAADSLRGTQFFAEPLDDP----EDDGFYDHELEGLRVLL-DRKEVGEVTGV 117
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ S+LE+ K L+PF + V E++L I P L+
Sbjct: 118 THGPTQSLLEVTLAEGKEALVPFVEEIVPEIDLDAGTCTITPPEGLLD 165
>gi|161507705|ref|YP_001577661.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus DPC
4571]
gi|172048318|sp|A8YVT3|RIMM_LACH4 RecName: Full=Ribosome maturation factor rimM
gi|160348694|gb|ABX27368.1| rRNA processing protein [Lactobacillus helveticus DPC 4571]
gi|328465658|gb|EGF36875.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus MTCC
5463]
Length = 171
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P + L S+ NR L + K + ++ F
Sbjct: 6 VARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQFK 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +LR L +D EL + ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLRGQILVVSEED--RGELPDGVYYYKDIFDCDVIDEETGKRIGKIVDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I ++ K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVREDDGKEYWIPNIADVVKKVDVAAKKVYVELMEGLRDED 171
>gi|331701478|ref|YP_004398437.1| ribosome maturation factor rimM [Lactobacillus buchneri NRRL
B-30929]
gi|329128821|gb|AEB73374.1| Ribosome maturation factor rimM [Lactobacillus buchneri NRRL
B-30929]
Length = 173
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKNK 58
+ I T GL GEV + S + P + + ++ L I + +
Sbjct: 2 NYYNIGKIVNTQGLKGEVRVISITDFPEKRFKVGNTVFAKLPNKHEQVALTIDGVRKHKG 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F +I+ L+ +L + ++L+ E++ + ++ D G GQ
Sbjct: 62 FILLHFKNHPSINDVEYLKPSELKIDEESLSSDDLKPGEYYYHQIIGLDVVDPNGNPIGQ 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + + GA + ++ +K L+P + V+L KI D + GL+
Sbjct: 122 VKEILSPGANDVWLVERDQQKDLLLPKIDSVITNVDLDAGKITAD-VPEGLDE 173
>gi|227515709|ref|ZP_03945758.1| 16S rRNA processing protein RimM [Lactobacillus fermentum ATCC
14931]
gi|227085957|gb|EEI21269.1| 16S rRNA processing protein RimM [Lactobacillus fermentum ATCC
14931]
Length = 216
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSND-NRELRILKMYRKNKR 59
+L + I THG+ GEV + + + Y++ + EL +
Sbjct: 49 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 108
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L D ELEE +++ + + G+ G++
Sbjct: 109 VLVKFKQFNNINEVQHFRDAELKV--ADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKI 166
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + + + L+P V EV+L K++++ +
Sbjct: 167 KEILAPGANDVWVVDREQKTDLLLPVIDDVVKEVDLAGGKVIVELLEGL 215
>gi|197284284|ref|YP_002150156.1| 16S rRNA-processing protein RimM [Proteus mirabilis HI4320]
gi|227357812|ref|ZP_03842160.1| 16S rRNA processing protein [Proteus mirabilis ATCC 29906]
gi|194681771|emb|CAR40984.1| 16S rRNA processing protein [Proteus mirabilis HI4320]
gi|227161922|gb|EEI46940.1| 16S rRNA processing protein [Proteus mirabilis ATCC 29906]
Length = 181
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ ++M +G+ +G+ G + + S + ++ Y + + I N+ I
Sbjct: 12 EPIVMGKLGSPYGIRGWLRVFSSTEHAENIFEYQPWFIQRHGQWESIEIETWKHHNQDII 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ +A+ L + ++ D + E++ DL + +G G V
Sbjct: 72 VKLKGIDDRDAANILTNFEIVVSATQLPDL---DGEYYWKDLMGCQVETDKGYDLGVVND 128
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ IK ++ + L+PF + +V+L KI++D
Sbjct: 129 MMETGSNDVMVIKANLKDAFGVRERLVPFLDGQVIKKVDLSAKKIIVDWDPG 180
>gi|332981638|ref|YP_004463079.1| 16S rRNA processing protein RimM [Mahella australiensis 50-1 BON]
gi|332699316|gb|AEE96257.1| 16S rRNA processing protein RimM [Mahella australiensis 50-1 BON]
Length = 168
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+ + +++ I HG++GE+ I ++ + Y+ +D R+ ++ N
Sbjct: 1 MQEYLIIGRILKPHGVSGEMKIQPLTDDIRRFDDLKCAYIKDKDDMFPHRVERVKYGNDV 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
GID++++A EL + L+ RQ L E ++ D+ + G Y G+V
Sbjct: 61 VYIKLEGIDDMNAARELVNKHLWVDRQH--AAPLPEGSYYVGDIIGCRVYTVDGVYLGEV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G+ + ++ + +K LIP K + ++++ +I+I+P+ L+
Sbjct: 119 KEVLPTGSNDVYDVVD-GQKQVLIPAIKDVIKTIDIEGERIVIEPMEGLLD 168
>gi|303250040|ref|ZP_07336242.1| 16S rRNA-processing protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253472|ref|ZP_07535343.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302651103|gb|EFL81257.1| 16S rRNA-processing protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859151|gb|EFM91193.1| Ribosome maturation factor rimM [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 175
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEETESIFDYQPWFLKIKGQWQPIELESWRYHNNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
D+ SA L + ++ F ELEE +++ DL + + + G V +
Sbjct: 68 KSSDDRESAQLLTNAEIGVDLSVFP--ELEEGDYYWHDLIGCQVINLEDYSMGVVTELME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDWDAG 174
>gi|323705462|ref|ZP_08117037.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535364|gb|EGB25140.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 166
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+D + + I + +G+NGEV + ++ Y+ + + +I +
Sbjct: 1 MDNYLSVGKITSAYGVNGEVKVYPLTDHLDRFYDLDYVYIFDDDKRVQYQIESVRFIKNL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +++ + A +L++ + D ELEEDE+F DL +M+ + + G +
Sbjct: 61 VLIKFYEVNDRNEAEKLKNKFIKITMDD--AVELEEDEYFIKDLIDMKVYTEDKRELGVL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + +K E+ LIP K + +V++ K+++ +
Sbjct: 119 KEVLKTGANDVYVVKT-DERDILIPAIKDVIKDVDINGKKMIVHLLEGL 166
>gi|294664961|ref|ZP_06730273.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292605268|gb|EFF48607.1| 16S rRNA-processing protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 170
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRI--LKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + + +E + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRTPSGQESGVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|149911443|ref|ZP_01900060.1| 16S rRNA-processing protein [Moritella sp. PE36]
gi|149805474|gb|EDM65481.1| 16S rRNA-processing protein [Moritella sp. PE36]
Length = 168
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G +G+ G + I+S+ + P + Y + + E+ + R K IA
Sbjct: 2 VVGRLGAVYGIKGWMKINSFTDIPEGIFNYSPWLIEQKGEWVEVALEDFKRHGKGLIAKL 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+GID A L ++ EDEF+ DL +G G+V +
Sbjct: 62 AGIDIREEAQSLTGAEIAINADQLPAL---EDEFYWRDLIGCSVETDKGYTLGKVTDMME 118
Query: 125 FGAGSILEIKNT-----MEKTFLIPFTK-FAVLEVNLQENKILI--DP 164
G+ +L IK +K L+P+ ++ V++ KI++ DP
Sbjct: 119 TGSNDVLVIKANATDAFGKKERLVPYLDGQVIISVDITAQKIIVNWDP 166
>gi|305681419|ref|ZP_07404226.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
gi|305659624|gb|EFM49124.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
Length = 169
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
+++ + HG+ GEV +D + P + RE L + R +
Sbjct: 5 LMIGRVIKAHGIRGEVVVDPTTDEPDIRYAPGTVLHGKQGKREHTLTVAHARPHQGRLLV 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF + + +A LR + +A++ D D +E+ F++ DL + +G G V GV
Sbjct: 65 TFDEVPDRTAAESLRGTQFWAEQLDIDD---DEEGFYDHDLTGLRVI-HEGAEIGTVTGV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ AG+ILE++ K L+PF V EV+L+ I P L+
Sbjct: 121 MSGPAGTILEVELAGGKQALVPFVFDIVPEVDLEAGTCTITPPDGLLD 168
>gi|331698505|ref|YP_004334744.1| ribosome maturation factor rimM [Pseudonocardia dioxanivorans
CB1190]
gi|326953194|gb|AEA26891.1| Ribosome maturation factor rimM [Pseudonocardia dioxanivorans
CB1190]
Length = 216
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 24/188 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLY-------------------SN 43
L+L+ I HGL GE+ ++ ++P + V+ S
Sbjct: 30 LLLVGVIVRPHGLRGELVVEVRTDSPEERFAPGAELVVLPAGSSAPGSSGPGSSAPGSSG 89
Query: 44 DNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL 103
R L + + R + F+ + +A LR ++L E EF L
Sbjct: 90 PPRVLTVETSRPHSGRLLVRFAQASDREAAEALRGIRLLVDAAALPPPADPE-EFHVHQL 148
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
E + G G V + + G +L + L+PF V V+L ++++D
Sbjct: 149 EGLRAELADGSVVGTVREIAHGPGGELLVLARPPRPDALVPFVTAIVPVVDLDGGRVVLD 208
Query: 164 PIAAGLNN 171
P L++
Sbjct: 209 PPEGLLDD 216
>gi|78046899|ref|YP_363074.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|109893068|sp|Q3BVY9|RIMM_XANC5 RecName: Full=Ribosome maturation factor rimM
gi|78035329|emb|CAJ22974.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 180
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 11 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRD 70
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 71 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 128
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ N I++D
Sbjct: 129 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFDANLIVVD 175
>gi|226305933|ref|YP_002765893.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis PR4]
gi|259585650|sp|C0ZXR9|RIMM_RHOE4 RecName: Full=Ribosome maturation factor rimM
gi|226185050|dbj|BAH33154.1| probable 16S rRNA processing protein RimM [Rhodococcus erythropolis
PR4]
Length = 190
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ + P D VL RE + + R
Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + A LR + + + + DEF++ +LE ++ G G V
Sbjct: 63 LLRLEGVSDRGDADALRGTLFVIDSSELEPSD-DPDEFYDHELEGLKVVLTDGTEVGSVI 121
Query: 121 GVYNFGAGSILEIKNTME--KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L I+ T E LIPF V V++ + ++I+P L+
Sbjct: 122 EVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEPPEGLLD 173
>gi|283782824|ref|YP_003373578.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
gi|283441158|gb|ADB13624.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
Length = 199
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 18 NDLLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWI 77
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW----- 116
F N + A L +LY +D ++ E+ ++ DL ++ +
Sbjct: 78 LLFEESQNRNDAEALNGTELYVHAEDAQELA-AENAWYIKDLVGLQARLCEENQLGLPAC 136
Query: 117 --GQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + GA S+L+I+ + KT L+PF + V EV++ + IDP +
Sbjct: 137 TIGKVVDVLD-GAQSLLKIRLNNPIDDDNKTALVPFVEALVPEVDVANGYLTIDPPGGLI 195
>gi|260893267|ref|YP_003239364.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
gi|260865408|gb|ACX52514.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
Length = 169
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 6/168 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFI 61
+ + I HG G + + + P VL + + K +
Sbjct: 4 DFITVGEIVAPHGYRGALKVLPLTDFPERFLGMKEAMVLLKGRRTTYTVKRARLHGKFVL 63
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G++ + A LR + R++ L ++ DL ME F +G + G++
Sbjct: 64 LELVGVERMEEAEALRGGLVQVPREEV--YPLPPGHYYIFDLIGMEVFTEEGAFLGKIEA 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + A + +++ K LIP K V V++ K+ + L
Sbjct: 122 VLSTRANDVFSVRSPEGKEILIPALKTVVCSVDVPGRKMTVKLPEGLL 169
>gi|56751848|ref|YP_172549.1| 16S rRNA-processing protein RimM [Synechococcus elongatus PCC 6301]
gi|81301068|ref|YP_401276.1| 16S rRNA-processing protein RimM [Synechococcus elongatus PCC 7942]
gi|67461291|sp|Q5N0Z1|RIMM_SYNP6 RecName: Full=Ribosome maturation factor rimM
gi|109893061|sp|Q31KY0|RIMM_SYNE7 RecName: Full=Ribosome maturation factor rimM
gi|56686807|dbj|BAD80029.1| 16S rRNA processing protein RimM [Synechococcus elongatus PCC 6301]
gi|81169949|gb|ABB58289.1| 16S rRNA processing protein RimM [Synechococcus elongatus PCC 7942]
Length = 182
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRK-----NK 58
+ + I GL GE+ ++ ++ P L E ++++ R
Sbjct: 12 WLAIGQIVAPQGLRGEMRVNPSSDFPERFLIPGPRWLRRPRQTEPEVVELERGRAIAGKN 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
+I +GI + A LR +L D EL+E EF DL ++ D+ G
Sbjct: 72 LYIVQLAGITSREQAEALRGCELLVPASDRP--ELDEGEFHVLDLIDLSVIDQASSTPLG 129
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V V + G +L ++ T + IPF + V V+L + +I I P L
Sbjct: 130 IVRDVVSAG-NDLLVVELTDGREVYIPFVEAIVPVVDLAQGRIEITPPPGLLE 181
>gi|21230657|ref|NP_636574.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769348|ref|YP_244110.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. 8004]
gi|24418648|sp|Q8PBC2|RIMM_XANCP RecName: Full=Ribosome maturation factor rimM
gi|81304695|sp|Q4US83|RIMM_XANC8 RecName: Full=Ribosome maturation factor rimM
gi|21112243|gb|AAM40498.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574680|gb|AAY50090.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris str. 8004]
Length = 170
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + S L ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRTPSGQESVLSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F I + + + ++Y R + DE++ DLE ++ +G
Sbjct: 61 QGKNLIAVFPDITDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEGLQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVLPEYVKSVDFEANLIVVD 165
>gi|91776685|ref|YP_546441.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
gi|91710672|gb|ABE50600.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
Length = 164
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELR------ILKMYRKNKRF 60
M I +G+ G V + ++ D R++L D ++ + K N
Sbjct: 1 MGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVEKAKVHNDLL 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ A + + + R + E EE E++ +DL ++ ++Q +GQV
Sbjct: 61 LVKLQGIDDRDQAFSCKGMYVAVYRDELP--EPEEGEYYWSDLIGLQVRNQQEVDFGQVV 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V+ GA +L +K ++ L+PF VLEV+ +L+D
Sbjct: 119 DVFATGANDVLVVK--GDRERLVPFIGQVVLEVDTDGKTMLVD 159
>gi|25028513|ref|NP_738567.1| 16S rRNA-processing protein [Corynebacterium efficiens YS-314]
gi|259507567|ref|ZP_05750467.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
gi|46397692|sp|Q8FP33|RIMM_COREF RecName: Full=Ribosome maturation factor rimM
gi|23493798|dbj|BAC18767.1| putative 16S rRNA processing protein [Corynebacterium efficiens
YS-314]
gi|259164841|gb|EEW49395.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
Length = 169
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
+ + + +HG+ GEV ++ ++P + RE L I R +
Sbjct: 5 LQIGRVIKSHGIRGEVVVEVTTDDPDIRYAPGEVLHGRQTGREHTLTIDTARAHQGRLLI 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + +A LR + +A + +D +E+ F++ +LE + G G V GV
Sbjct: 65 KFEEIPDRTAADSLRGTRFFAPPLERED---DEEGFYDHELEGLRII-HDGADIGVVTGV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ AG ILE++ T K LIPF V EV+L+ I P L+
Sbjct: 121 MHGPAGEILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITPPDGLLD 168
>gi|302879902|ref|YP_003848466.1| 16S rRNA processing protein RimM [Gallionella capsiferriformans
ES-2]
gi|302582691|gb|ADL56702.1| 16S rRNA processing protein RimM [Gallionella capsiferriformans
ES-2]
Length = 174
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKR 59
+ +V+M + + G+ G V I ++ L Y + + RE+ + + +K
Sbjct: 7 EPMVIMGRVASAFGIKGWVKIQPFSEYVDSLLGYKTWYLGHENGPWREVTVAQCETHDKT 66
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
A F + +A +L+ L + R +E E E++ DL M + G+ G V
Sbjct: 67 LAAQFPDCPDRTAAEKLKGLLIAVPRSSLPTQE--EGEYYWADLIGMSVINGAGETLGTV 124
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA +L ++ LIPF + V++ I ++
Sbjct: 125 IELLETGANDVLIVRGN-GPDVLIPFLNSVIGPVDVTTKTIQVN 167
>gi|239622499|ref|ZP_04665530.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239514496|gb|EEQ54363.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 202
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGESEYIVEGSRTFKDRWIL 68
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
G+D+ ++A L ++LY + D +D LE DE++ DL +E + G+
Sbjct: 69 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 127
Query: 115 YWGQVCGVYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
G+V V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 128 VVGKVADVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 187
Query: 161 LIDPIAAGLNNTTM 174
+DP + M
Sbjct: 188 TLDPPGGLIPGCGM 201
>gi|58580949|ref|YP_199965.1| 16S rRNA-processing protein RimM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188578072|ref|YP_001915001.1| 16S rRNA-processing protein RimM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425543|gb|AAW74580.1| 16S rRNA processing protein RimM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188522524|gb|ACD60469.1| 16S rRNA processing protein RimM [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 180
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 11 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD 70
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 71 QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 128
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 129 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 175
>gi|83644607|ref|YP_433042.1| 16S rRNA processing protein RimM [Hahella chejuensis KCTC 2396]
gi|109893019|sp|Q2SL57|RIMM_HAHCH RecName: Full=Ribosome maturation factor rimM
gi|83632650|gb|ABC28617.1| 16S rRNA processing protein RimM [Hahella chejuensis KCTC 2396]
Length = 173
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNK 58
+ + V + I +G+ G + + S+ + P ++ RY + + ++ + K
Sbjct: 1 MSEKVCIGKIVGVYGVKGWLKVRSFTSPPENMLRYANWELVREDGNRSSAKLRSGKPQGK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +G+D+ + A ++ + + LEE E++ LE + F +G G+
Sbjct: 61 GIVIALAGVDDRNLAKSYVGCQIEIESSELPA--LEEGEYYWRQLEGLTVFTSEGVNIGR 118
Query: 119 VCGVYNFGAGSILEI----KNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
V + GA +L + ++ ++ LIP+ + ++L +N +++D
Sbjct: 119 VSHLIETGANDVLVVIGSAESIDKRERLIPYLPGQFIENIDLDKNLMVVD 168
>gi|292491048|ref|YP_003526487.1| 16S rRNA processing protein RimM [Nitrosococcus halophilus Nc4]
gi|291579643|gb|ADE14100.1| 16S rRNA processing protein RimM [Nitrosococcus halophilus Nc4]
Length = 175
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
++ VL+ I +G+ G V + SY ++ RY + + R+L+ + K
Sbjct: 11 NRYVLIGRISGVYGIQGWVRVYSYTEPRDNILRYEPWYLQQNGKWIARRLLEGRTQGKGI 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ A++ ++ R+ E E E++ DL + QG G+V
Sbjct: 71 VVALDGIDDRDVATQWIGREIAVHREQLPPPE--EGEYYWADLIGLRVITVQGVELGRVE 128
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILID 163
+ GA +L ++ E+ LIPF K V +V+L++ + +D
Sbjct: 129 RLLETGANDVLVVQ--GERERLIPFRKDTIVKQVDLEQGLLRVD 170
>gi|225180941|ref|ZP_03734389.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
gi|225168422|gb|EEG77225.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
Length = 169
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+++ V + + TTHG+ G + + ++NP + +V + +++ + +
Sbjct: 1 MEQSVAIGKVVTTHGVKGGMKVQPLSDNPERIKELIRVFVEKDGHSAARDVVEAFVHGRA 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ GID+ +A EL L + L E+ ++ + ++ + G Y G +
Sbjct: 61 WVIRLEGIDSCDAARELVGAMLTIPISE--RLPLPENSYYLDQIIGLDVYTVDGTYLGSI 118
Query: 120 CGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V G+ + ++ + LIP K V ++L ++ +DP L
Sbjct: 119 INVLETGSNDVYVVENKADGRQVLIPALKAVVKSIDLDTGRMEVDPPEGLL 169
>gi|313896374|ref|ZP_07829927.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975173|gb|EFR40635.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
Length = 175
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 7/167 (4%)
Query: 1 MVKL-----DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR 55
M KL + +++ +G HG+ G+V + + P R + L I++M
Sbjct: 1 MTKLSPSAPEGRIVIGRVGAPHGIAGDVRVIPLTDFPERFARLREVVVGDELLHIVRMKE 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K F+ F A L L R D LEE E++ D+ + +D G
Sbjct: 61 QGKNFLMQFREYPVREEAQRLTGRLLTVARTD--AAPLEEGEYYVFDIVGLSVYDEAGTL 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V V G+ + ++ + LIP + V +++ ++ +
Sbjct: 119 LGSVENVIRTGSNDVYAVRAEDGRELLIPALRSVVRNIDIAGGRMDV 165
>gi|225022024|ref|ZP_03711216.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
gi|224945221|gb|EEG26430.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
Length = 169
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
+++ + HG+ GEV +D + P + RE L + R +
Sbjct: 5 LMIGRVIKAHGIRGEVVVDPTTDEPDIRYAPGTVLHGKQGKREYTLTVAHARPHQGRLLV 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF + + +A LR + +A++ D D +E+ F++ DL + +G G V GV
Sbjct: 65 TFDEVPDRTAAESLRGTQFWAEQLDIDD---DEEGFYDHDLTGLRVI-HEGAEIGTVTGV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ AG+ILE++ K L+PF V +V+L+ I P L+
Sbjct: 121 MSGPAGTILEVELAGGKQALVPFVFDIVPDVDLEAGTCTITPPDGLLD 168
>gi|329894266|ref|ZP_08270152.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC3088]
gi|328923197|gb|EGG30519.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC3088]
Length = 173
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D L+ + + HG+ G V I S+ + L Y + K +
Sbjct: 4 DDLITVGRVLGAHGVKGWVRIRSFTDPEEQLFEYAPLYLMQRGKKSAFEVEARKSLTKGW 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
G+D+ ++A L+ + + EL EDEF+ DL M + G G+V
Sbjct: 64 SVKLKGLDDRNAAELLKGVDITMPSAVLP--ELAEDEFYWRDLIGMTVVTK-GVLLGEVS 120
Query: 121 GVYNFGAGSILEIKNTME----KTFLIPF-TKFAVLEVNLQENKILIDPIAAG 168
+ GA +L +K+T + LIPF + VL V+ N I +D
Sbjct: 121 NMLETGANDVLVVKSTEGSVDEQERLIPFLLERFVLGVDRASNTIEVDWDPEW 173
>gi|68248808|ref|YP_247920.1| 16S rRNA-processing protein RimM [Haemophilus influenzae 86-028NP]
gi|145633788|ref|ZP_01789512.1| 16S rRNA-processing protein [Haemophilus influenzae 3655]
gi|145635639|ref|ZP_01791336.1| 16S rRNA-processing protein [Haemophilus influenzae PittAA]
gi|145637367|ref|ZP_01793027.1| 16S rRNA-processing protein [Haemophilus influenzae PittHH]
gi|68057007|gb|AAX87260.1| 16S rRNA processing protein RimM [Haemophilus influenzae 86-028NP]
gi|144985359|gb|EDJ92189.1| 16S rRNA-processing protein [Haemophilus influenzae 3655]
gi|145267112|gb|EDK07119.1| 16S rRNA-processing protein [Haemophilus influenzae PittAA]
gi|145269459|gb|EDK09402.1| 16S rRNA-processing protein [Haemophilus influenzae PittHH]
Length = 175
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDRETAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|109893051|sp|Q2NVK3|RIMM_SODGM RecName: Full=Ribosome maturation factor rimM
gi|84779045|dbj|BAE73822.1| 16S rRNA processing protein RimM [Sodalis glossinidius str.
'morsitans']
Length = 185
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 75/186 (40%), Gaps = 21/186 (11%)
Query: 1 MVKLDK---------LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRE 47
MVK+ K V++ +G+ +G+ G + + S + Y + + + +
Sbjct: 1 MVKMSKQLRIAAPVEPVVVGKMGSAYGIRGWLRVFSSTEEAESIFDYQPWFIKRAREWQP 60
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+ + R N+ I I++ +A+ L + ++ D L+ E++ DL +
Sbjct: 61 IGLESWKRHNQDLIIKVRDIEDREAATLLTNCEIVVDASQLPD--LDSGEYYWKDLLGCQ 118
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKIL 161
G G+V + G+ +L +K ++ + LIPF + V+L + I
Sbjct: 119 VVTVGGYQLGEVIDLMETGSNDVLVVKANLKDAFGIQERLIPFLDGKVIKNVDLAAHIIE 178
Query: 162 IDPIAA 167
+D
Sbjct: 179 VDWDPG 184
>gi|218782475|ref|YP_002433793.1| 16S rRNA processing protein RimM [Desulfatibacillum alkenivorans
AK-01]
gi|218763859|gb|ACL06325.1| 16S rRNA processing protein RimM [Desulfatibacillum alkenivorans
AK-01]
Length = 169
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 8/172 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN---RELRILKMYRK 56
+ V + + HG+ G V + S+A+NP + +L +E +
Sbjct: 1 MTSKDFVEVGQVAGVHGIRGAVLLRSFADNPDIFAKGGKLLLKGPGENIQEYILESSRPY 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A G+ + A L+ + R ELE DE++ DL ME G
Sbjct: 61 KGKLLAELQGVSDRSGAEALKGRMILVHRDALP--ELEPDEYYWFDLIGMEVAAPDGSRL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G + + GA + IK+ EK L P + VL ++L+ +++D
Sbjct: 119 GVLDAIIETGANDVYVIKD-GEKEILAPALPWVVLSIDLEAGVMIVDLPEGL 169
>gi|75907314|ref|YP_321610.1| 16S rRNA-processing protein RimM [Anabaena variabilis ATCC 29413]
gi|109892999|sp|Q3ME71|RIMM_ANAVT RecName: Full=Probable 16S rRNA-processing protein rimM
gi|75701039|gb|ABA20715.1| 16S rRNA processing protein RimM [Anabaena variabilis ATCC 29413]
Length = 233
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMY---- 54
D+ + + I + GL+GEV + ++ P R++L I ++
Sbjct: 48 DPDEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYL 107
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQG 113
++ +G++N + ELR L+ D EL EDE+ DL ME F G
Sbjct: 108 ENKNLYVLQLAGVENRTQSEELRGCMLFVPASDRP--ELGEDEYHVVDLIGMEVFLQTSG 165
Query: 114 KYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G V V G +LE+ + KT LIPF K V+L+ +I I P
Sbjct: 166 DLVGTVVDVIPAG-NDLLEVSLHEPVPSDKKPKTVLIPFVKAIAPVVDLETRRIEITPPP 224
Query: 167 AGLN 170
L
Sbjct: 225 GLLE 228
>gi|307730594|ref|YP_003907818.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1003]
gi|307585129|gb|ADN58527.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1003]
Length = 252
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R L+ +
Sbjct: 77 DAVEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGRERHSAPSLQARTHSD 136
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A GI + +A LR ++Y R +F L+ DEF+ DL ++ + G+ G+
Sbjct: 137 SVVAHLGGIADRDAALALRGSRVYVSRSEFPA--LQADEFYWVDLLGLDVVNLAGENLGK 194
Query: 119 VCGVYNFGAGSILEIKNTME--------KTFLIPFTKFAVLEVNLQENKILID 163
V G+ + GA S+L ++ LIPF V V+ +I +D
Sbjct: 195 VAGMIDNGAHSVLRVEYPAADKSGKPVTAERLIPFVGVFVKTVDQAAKQITVD 247
>gi|296171461|ref|ZP_06852747.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894147|gb|EFG73907.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 173
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 8/170 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + HG+ GEV ++ ++P L R+ + R
Sbjct: 3 LTVGRVAKAHGIGGEVVVEIRTDDPGARFAPGNTLRGRASRGGGERDFVVESAREHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+ + SA LR D + E D +++ LE + G G V
Sbjct: 63 LLRLAGVTDRDSADALRGTVFVVDSDDLPPID-EPDTYYDHQLEGLHVRTVAGHDVGVVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ L+PF V V+L + + IDP L+
Sbjct: 122 EVLHTAAGELLAVRRGDGGEALVPFVGAIVTSVSLDDRVVEIDPPEGLLD 171
>gi|295691477|ref|YP_003595170.1| 16S rRNA processing protein RimM [Caulobacter segnis ATCC 21756]
gi|295433380|gb|ADG12552.1| 16S rRNA processing protein RimM [Caulobacter segnis ATCC 21756]
Length = 188
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 6/179 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRILKMYRKNKRFIA 62
D L+L+ + G+ GEV I +Y +P+ + + + + L I + +
Sbjct: 7 DPLILVGRVAGGFGVRGEVRISTYTEDPMSIAAFKALKRQDGSPALTIASARKTKDGVVC 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCG 121
G++ +A LR L+LY R E +EDEF+ TDL + + + G+V
Sbjct: 67 RCPGVETKEAADALRGLRLYVPRSALP--EPDEDEFYLTDLVGLTVRHIQTDQLLGRVKS 124
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V NFGAG ILEI T+ +PFT+ AV EV + E IL DP A + +
Sbjct: 125 VQNFGAGDILEITPDLGGPTWYLPFTRAAVPEVKISEGLILADPPALVGEHEGPSEDEE 183
>gi|229845195|ref|ZP_04465329.1| 16S rRNA-processing protein [Haemophilus influenzae 6P18H1]
gi|229811906|gb|EEP47601.1| 16S rRNA-processing protein [Haemophilus influenzae 6P18H1]
Length = 175
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V +
Sbjct: 68 KGVDDRETAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L +K ++ LIPF + V V+L I +D A
Sbjct: 126 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|161723309|ref|NP_246234.2| 16S rRNA-processing protein [Pasteurella multocida subsp. multocida
str. Pm70]
Length = 175
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHNNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+D+ +A L ++++ F ELEE +++ DL + + G V +
Sbjct: 68 KHVDDRETAQTLANIEIGVDLAVFP--ELEEGDYYWHDLIGCNVVNLENYAMGTVTEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I++D A
Sbjct: 126 TGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRVDLNTKTIVVDWDAG 174
>gi|222100125|ref|YP_002534693.1| 16S rRNA-processing protein rimM [Thermotoga neapolitana DSM 4359]
gi|254797769|sp|B9K8P4|RIMM_THENN RecName: Full=Ribosome maturation factor rimM
gi|221572515|gb|ACM23327.1| 16S rRNA-processing protein rimM [Thermotoga neapolitana DSM 4359]
Length = 176
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 9/171 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNR---ELRILKMYRKN 57
+++ + + + THGL GEV Y N+ +L+ VLY+ + + L + + R N
Sbjct: 9 INERIAVGKVVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNREKKVFYNLSVESVRRMN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ F ID + +A +++ +++ K ++ L+ DE++ ++ E + G+ G
Sbjct: 69 KLFLIKFETIDTVEAAEKIKGCEVFIKYEELP--PLQNDEYYFYEILGCEVYYESGECVG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V + G+ +L +K + LIP K V+E+ E KI++ +
Sbjct: 127 KVVDIIETGSNDVLVVKKKN-RETLIPMIKDCVVEIKKPEKKIVVKELEWI 176
>gi|322831431|ref|YP_004211458.1| 16S rRNA processing protein RimM [Rahnella sp. Y9602]
gi|321166632|gb|ADW72331.1| 16S rRNA processing protein RimM [Rahnella sp. Y9602]
Length = 182
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 18/183 (9%)
Query: 1 MVKLDKLVL------MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRI 50
M K V+ + +G+T+G+ G + + S + + Y + + + + +
Sbjct: 1 MSKQSNPVVPAEPLVLGKMGSTYGIRGWLRVFSSTEDAESIFDYQPWFIQRAGKWQVVEL 60
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
R + I G+D+ +A+ L + ++ + LE+ +++ DL +
Sbjct: 61 EGWKRHTQDLIIKVKGVDDRDAANLLTNCEIVVDSKQLP--PLEDGDYYWKDLFGCQVVT 118
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDP 164
G G++ + G+ ++ +K ++ K LIPF + +V+L + +D
Sbjct: 119 TSGYELGKIIDMMETGSNDVMVVKANLKDAFGLKERLIPFLDGQVIKKVDLATRTVEVDW 178
Query: 165 IAA 167
Sbjct: 179 DPG 181
>gi|329120757|ref|ZP_08249419.1| 16S rRNA processing protein RimM [Neisseria bacilliformis ATCC
BAA-1200]
gi|327460554|gb|EGF06890.1| 16S rRNA processing protein RimM [Neisseria bacilliformis ATCC
BAA-1200]
Length = 169
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRILKM-YRK 56
M + + V M I G+ G V + YA++ +D + L N +L+
Sbjct: 1 MAQETQWVAMGYIKGAFGIKGWVKVAVDTEYADSLLDYPEWRLSRNGKAVSVVLEAGKTA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
F GI + +A LR + R DF EE EE E++ DL M G+
Sbjct: 61 ADGLHVKFQGIGDRDAAQLLRGYTVEINRADF--EETEEGEYYWADLVGMTVITPAGETL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ GA IL +++ +T LIPF V EVN + I D
Sbjct: 119 GTVSGLMETGAHDILVVRHEGGET-LIPFVAQFVGEVNRETRTITAD 164
>gi|319639238|ref|ZP_07993989.1| 16S rRNA-processing protein rimM [Neisseria mucosa C102]
gi|317399422|gb|EFV80092.1| 16S rRNA-processing protein rimM [Neisseria mucosa C102]
Length = 169
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M K V M I G+ G + I + Y ++ +D + L + + +
Sbjct: 1 MTDTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQLCKDGKTLNVTLEAGKIV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ A LR + R+ F E EDE++ DL M +++
Sbjct: 61 NGELQVKFEGIDDRDQAFALRGYTIEIPRESFAPTE--EDEYYWADLVGMTVINKENIVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L IK + LIPF + V+ I+ D GL+
Sbjct: 119 GKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIIAD---WGLD 168
>gi|116495081|ref|YP_806815.1| 16S rRNA-processing protein RimM [Lactobacillus casei ATCC 334]
gi|191638584|ref|YP_001987750.1| 16S rRNA-processing protein RimM [Lactobacillus casei BL23]
gi|227534906|ref|ZP_03964955.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|122263502|sp|Q038J9|RIMM_LACC3 RecName: Full=Ribosome maturation factor rimM
gi|238693051|sp|B3WEU1|RIMM_LACCB RecName: Full=Ribosome maturation factor rimM
gi|116105231|gb|ABJ70373.1| 16S rRNA processing protein RimM [Lactobacillus casei ATCC 334]
gi|190712886|emb|CAQ66892.1| Probable 16S rRNA-processing protein rimM [Lactobacillus casei
BL23]
gi|227187662|gb|EEI67729.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|327382625|gb|AEA54101.1| 16S rRNA processing protein RimM [Lactobacillus casei LC2W]
gi|327385821|gb|AEA57295.1| 16S rRNA processing protein RimM [Lactobacillus casei BD-II]
Length = 172
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNKR 59
+ + TI THG+ GEV + + P D + + ++ L I +
Sbjct: 1 MPDYYDIGTIVNTHGIRGEVRVLVTTDFPADRFKVGNTVYVATSPKTALTIQSVREHKGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF +I+ + KL + L+E ++ D+ + D QG+ G+V
Sbjct: 61 TLLTFKDYTDINQVLPFKGKKLQVTETAL--QPLDEGSYYYKDIIGLTVIDEQGQTLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G + I + + L+PF K V ++L + + +++
Sbjct: 119 NEILSPGPNDVWVIPRSGKSDILLPFLKSVVQSIDLDQKVAHVIVPEGLIDDA 171
>gi|16127881|ref|NP_422445.1| 16S rRNA processing protein RimM [Caulobacter crescentus CB15]
gi|221236702|ref|YP_002519139.1| 16S rRNA-processing protein RimM [Caulobacter crescentus NA1000]
gi|21362873|sp|Q9A2B4|RIMM_CAUCR RecName: Full=Ribosome maturation factor rimM
gi|13425407|gb|AAK25613.1| 16S rRNA processing protein RimM [Caulobacter crescentus CB15]
gi|220965875|gb|ACL97231.1| 16S rRNA processing protein rimM [Caulobacter crescentus NA1000]
Length = 193
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
D L+L+ + G+ GEV I +Y +P+ + + + L I + +
Sbjct: 7 DPLILVGRVAGGFGVRGEVRITTYTEDPLSIAGFKALKRQDGSPALTIASARKTKDGVVC 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCG 121
G++ +A LR L+LY R E ++DEF+ TDL + + + G+V
Sbjct: 67 RCPGVETKEAADALRGLRLYVPRSALP--EPDDDEFYLTDLVGLTVRHIQTDQLLGRVKS 124
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
V NFGAG ILEI T+ +PFT+ AV EV + E IL DP A ++ + D
Sbjct: 125 VQNFGAGDILEITPDLGGPTWYLPFTRAAVPEVRVSEGLILADPPALVGDHEGPEEKGLD 184
Query: 181 CPLD 184
+
Sbjct: 185 ENEE 188
>gi|325924837|ref|ZP_08186272.1| 16S rRNA processing protein RimM [Xanthomonas perforans 91-118]
gi|325544767|gb|EGD16115.1| 16S rRNA processing protein RimM [Xanthomonas perforans 91-118]
Length = 170
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFDANLIVVD 165
>gi|21242046|ref|NP_641628.1| 16S rRNA-processing protein RimM [Xanthomonas axonopodis pv. citri
str. 306]
gi|24418649|sp|Q8PMY2|RIMM_XANAC RecName: Full=Ribosome maturation factor rimM
gi|21107448|gb|AAM36164.1| 16S rRNA processing protein RimM [Xanthomonas axonopodis pv. citri
str. 306]
Length = 170
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRI--LKMYR 55
M + ++ +L+ I G+ GE+ ++S+ + RY + S +E + ++
Sbjct: 1 MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|71275921|ref|ZP_00652204.1| RimM protein:PRC-barrel [Xylella fastidiosa Dixon]
gi|71900007|ref|ZP_00682152.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|170729325|ref|YP_001774758.1| 16S rRNA-processing protein RimM [Xylella fastidiosa M12]
gi|238687916|sp|B0U289|RIMM_XYLFM RecName: Full=Ribosome maturation factor rimM
gi|71163298|gb|EAO13017.1| RimM protein:PRC-barrel [Xylella fastidiosa Dixon]
gi|71730217|gb|EAO32303.1| RimM protein:PRC-barrel [Xylella fastidiosa Ann-1]
gi|167964118|gb|ACA11128.1| 16S rRNA processing protein [Xylella fastidiosa M12]
Length = 170
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ + GL GE+ ++S+ + RY + + L + Y
Sbjct: 1 MKDNERRILLGRVVGGFGLRGEIKMESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
KR IATF GI++ ++ + ++Y R DE++ DLE ++ +G
Sbjct: 61 TGKRLIATFPGINDRNAVEAICGTEIYVPRSALPPPH--PDEYYWVDLEGLQVHTLEGVV 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ GA ++ I E+ LIPF V V+ + +I++D
Sbjct: 119 LGSVSHLFSNGANDVVVIH--GERERLIPFVQPDYVKSVDFEAERIVVD 165
>gi|237824061|pdb|3H9N|A Chain A, Crystal Structure Of The Ribosome Maturation Factor Rimm
(Hi0203) From H.Influenzae. Northeast Structural
Genomics Consortium Target Ir66
Length = 177
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + I S + Y + + + + + N I
Sbjct: 4 VVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKL 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ +A L ++++ F ELEE +++ DL + +G G V
Sbjct: 64 KGVDDREAAQILANVEIGVDLSVFP--ELEEGDYYWHDLIGCTVVNLEGYTXGTVTEXXE 121
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAAGLNN 171
G+ +L +K ++ LIPF + V V+L I +D A L +
Sbjct: 122 TGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFLEH 174
>gi|317482001|ref|ZP_07941026.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
gi|316916568|gb|EFV37965.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
Length = 204
Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
G+D+ ++A L ++LY + D +D LE DE++ DL +E + G+
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
G+V V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVADVIDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|317121797|ref|YP_004101800.1| 16S rRNA processing protein RimM [Thermaerobacter marianensis DSM
12885]
gi|315591777|gb|ADU51073.1| 16S rRNA processing protein RimM [Thermaerobacter marianensis DSM
12885]
Length = 167
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIAT 63
+A I G+ GEV +D +++P L + R R+ + + +
Sbjct: 3 VAAILAPWGIRGEVKVDLLSDDPQRLKPGLEVWVAPPGGEPPRPDRVEWARPQGRFWRVK 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+G + +A LR +L L E E++ L ++ D G+ G+V V
Sbjct: 63 LAGCPDRTAAEALRGGRLQVPEDRVP--PLPEGEYYVFQLVGLQVVDPDGRPVGRVRDVL 120
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A ++ + + LIP + AV EV+L ++++ + L+
Sbjct: 121 RYPANDVIVVDADDGREVLIPAIRQAVAEVDLAGGRLVLGDLPGLLD 167
>gi|225075459|ref|ZP_03718658.1| hypothetical protein NEIFLAOT_00464 [Neisseria flavescens
NRL30031/H210]
gi|224953277|gb|EEG34486.1| hypothetical protein NEIFLAOT_00464 [Neisseria flavescens
NRL30031/H210]
Length = 169
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRIL--KMYR 55
M K V M I G+ G + I + Y ++ +D + L D + L ++
Sbjct: 1 MTNTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQLC-KDGKTLNVVLETGKI 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F E EDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFAPTE--EDEYYWADLVGMTVINKENII 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L IK + LIPF + V+ I+ D GL+
Sbjct: 118 LGKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIIAD---WGLD 168
>gi|207725343|ref|YP_002255739.1| 16S rRNA processing protein RimM [Ralstonia solanacearum MolK2]
gi|206590579|emb|CAQ37541.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
MolK2]
Length = 213
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 15/175 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKMYR 55
LV + +G +G+ G + + + + L + L S+D R L +
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPHGDAEALLHAGTWWLKPAAGAPAVSSDWRVLPVGTSRE 102
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +A + + + A LR ++ R DF +DEF+ DL + Q +
Sbjct: 103 HSGSVVAGSPAVPDRNVAEALRGCAVWVSRADFPAP--ADDEFYWVDLIGSAVVNEQQES 160
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 161 LGTVAGLLDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|84622877|ref|YP_450249.1| 16S rRNA-processing protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|67461247|sp|Q5H391|RIMM_XANOR RecName: Full=Ribosome maturation factor rimM
gi|109893069|sp|Q2P652|RIMM_XANOM RecName: Full=Ribosome maturation factor rimM
gi|209573732|sp|B2SJV2|RIMM_XANOP RecName: Full=Ribosome maturation factor rimM
gi|84366817|dbj|BAE67975.1| Probable 16S rRNA processing protein rimM [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 170
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|320530765|ref|ZP_08031809.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
gi|320137052|gb|EFW28990.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
Length = 175
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 7/167 (4%)
Query: 1 MVKL-----DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR 55
M KL + +++ +G HG+ G+V + + P R + L I++M
Sbjct: 1 MTKLSPSAPEGRIVIGRVGAPHGIAGDVRVIPLTDFPERFARLREVVVGDELLHIVRMKE 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K F+ F A L L R D LEE E++ D+ + +D+ G
Sbjct: 61 QGKNFLMQFREYPVREEAQRLTGRLLTVARTD--AAPLEEGEYYVFDIVGLSVYDKAGTL 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V V G+ + ++ + LIP V +++ ++ +
Sbjct: 119 LGSVENVIRTGSNDVYAVRAEDGRELLIPALHSVVRNIDIAGGRMDV 165
>gi|291533107|emb|CBL06220.1| 16S rRNA processing protein RimM [Megamonas hypermegale ART12/1]
Length = 173
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+K +++ IG HG+ G++ + + P N D++E+ I+ + +
Sbjct: 10 NKKIIIGKIGAAHGVRGDMKVYPLTDFPDRFNTIKKAYVDDKEINIISTRYQGNFVVMKV 69
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+++ + + L R D LE+ E++ D+ ++ ++ G++ +
Sbjct: 70 EGVNSREEVARFTNKLLKINRSDVP--PLEDGEYYAFDIIGLQVINQDDVVLGKITEILK 127
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+ + K + LIP K V E+N+++ + +
Sbjct: 128 TGSNDVYITKAKDGRQILIPALKKVVTEINVEDGFMKV 165
>gi|159904270|ref|YP_001551614.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9211]
gi|238687125|sp|A9BD47|RIMM_PROM4 RecName: Full=Ribosome maturation factor rimM
gi|159889446|gb|ABX09660.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9211]
Length = 176
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRK 56
M + D + + + GL GEV ++ ++ P R++ + + LK R+
Sbjct: 1 MSRKDSWLTIGKLVGAQGLRGEVKVNPSSDFPERFINPGERWLQKNTEEPSRIELKSGRQ 60
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDRQ 112
+I +F GI + + A + KL +L+E EF DL ++ F +
Sbjct: 61 LPGKSIYIVSFIGITDRNKAESIVGNKLLVPSDQKP--KLKEGEFHLVDLLGLKAKFTQD 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G+V + + G +L IK KT LIPF K V +NL++ +LI P L
Sbjct: 119 GSDVGEVIDLTSAG-NDLLVIKLVEGKTVLIPFVKEIVPVINLKQGWLLIKPPPGLLE 175
>gi|239631959|ref|ZP_04674990.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066645|ref|YP_003788668.1| rimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
gi|239526424|gb|EEQ65425.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300439052|gb|ADK18818.1| RimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
Length = 172
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNKR 59
+ + TI THG+ GEV + + P D + + ++ L I +
Sbjct: 1 MPDYYDIGTIVNTHGIRGEVRVLVTTDFPADRFKVGNIVYVATSPKTALTIQSVREHKGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ TF +I+ + KL + L+E ++ D+ + D QG+ G+V
Sbjct: 61 TLLTFKDYTDINQVLPFKGKKLQVTETAL--QPLDEGSYYYKDIIGLTVIDEQGQTLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G + I + + L+PF K V ++L + + +++
Sbjct: 119 NEILSPGPNDVWVIPRSGKSDILLPFLKSVVQSIDLDQKVAHVIVPEGLIDDA 171
>gi|116671027|ref|YP_831960.1| 16S rRNA-processing protein RimM [Arthrobacter sp. FB24]
gi|171855198|sp|A0JXU0|RIMM_ARTS2 RecName: Full=Ribosome maturation factor rimM
gi|116611136|gb|ABK03860.1| 16S rRNA processing protein RimM [Arthrobacter sp. FB24]
Length = 197
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + + P D R+V+ L + +
Sbjct: 3 LQVARIGKPHGIRGEVTVQVLTDAPEDRFIPGTRFVVEPASAGPLTVDSARWNKDILLLG 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ + A LR KL+ + ++ ++E+ E ++ +L ++ G + G+
Sbjct: 63 FEGIETRNQAEALRGAKLFIETEELEEEDDE--GWYEHELVGLDVR-VGDAVVGTISGLR 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-NTTMKNPQYDCP 182
++ +++ K LIPF + V EVN+ E IL+ P N D
Sbjct: 120 TLPVQDLIVVESPDGKEILIPFVEEIVPEVNVGEKYILVTPPPGLFEINVEDSGETSDAG 179
Query: 183 LDSAGK 188
G+
Sbjct: 180 ESGPGE 185
>gi|330719545|gb|EGG98142.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC2047]
Length = 181
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D LV++ IG +G+ G V I+S+ + Y + D + +++ + K
Sbjct: 7 DDLVVLGQIGAAYGIKGWVKINSHTEPKTGIFDYDGWFIKSGRDWKPVKVAASRQHGKGL 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ----GKYW 116
IA G D+ ++A L++ ++ K EL+ EF+ + LE + R
Sbjct: 67 IAQLEGCDDRNAAELLKNAEIAIKSDQLP--ELDSGEFYWSQLEGLSVVTRDAQGNEVLL 124
Query: 117 GQVCGVYNFGAGSILEIKNTME----KTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L ++ + L+P + V +++L I +D
Sbjct: 125 GKVNHLLATGSNDVLVVRGCEGSLDKRERLLPLVMEHVVKQIDLDAKVIKVD 176
>gi|170717929|ref|YP_001783519.1| 16S rRNA-processing protein RimM [Haemophilus somnus 2336]
gi|189040843|sp|B0UVM7|RIMM_HAES2 RecName: Full=Ribosome maturation factor rimM
gi|168826058|gb|ACA31429.1| 16S rRNA processing protein RimM [Haemophilus somnus 2336]
Length = 175
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEQAESIFDYQPWFLKIKGQWQPIELESWKFHNHELIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GI+ A L ++++ F L+E +F+ DL + + QG G V +
Sbjct: 68 KGINEREVAQTLANVEIGVNLSIFPL--LDEGDFYWHDLIGCQVVNLQGYAMGVVSEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
GA +L ++ + +K LIPF + V V+L I +D A
Sbjct: 126 TGANDVLVVRASTKDAFGKKERLIPFLYEQVVKRVDLSSKTIEVDWDAG 174
>gi|238756461|ref|ZP_04617768.1| Ribosome maturation factor rimM [Yersinia ruckeri ATCC 29473]
gi|238705310|gb|EEP97720.1| Ribosome maturation factor rimM [Yersinia ruckeri ATCC 29473]
Length = 186
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ +++ +G+T+G+ G + + S N + Y + S + + + R ++
Sbjct: 14 PEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQVSGKWQHVELEDWKRHSQD 73
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I +D+ +A+ L + ++ + EL+ D+++ DL + G G++
Sbjct: 74 LIIKVKDVDDRDAANLLTNCEIIVDSKQLP--ELDGDDYYWKDLMGCQVVTTTGYELGKI 131
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ ++ +K ++ K L+PF + V+L ++ +D
Sbjct: 132 IDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDPG 185
>gi|113460440|ref|YP_718502.1| 16S rRNA-processing protein RimM [Haemophilus somnus 129PT]
gi|122945158|sp|Q0I1J9|RIMM_HAES1 RecName: Full=Ribosome maturation factor rimM
gi|112822483|gb|ABI24572.1| 16S rRNA processing protein RimM [Haemophilus somnus 129PT]
Length = 175
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + N I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEQAESIFDYQPWFLKIKGQWQPIELESWKFHNHELIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GI+ A L ++++ F L+E +F+ DL + + QG G V +
Sbjct: 68 KGINEREVAQTLANVEIGVNLSVFPL--LDEGDFYWHDLIGCQVVNLQGYAMGVVSEMME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
GA +L ++ + +K LIPF + V V+L I +D A
Sbjct: 126 TGANDVLVVRASTKDAFGKKERLIPFLYEQVVKRVDLSSKTIEVDWDAG 174
>gi|298370120|ref|ZP_06981436.1| 16S rRNA processing protein RimM [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281580|gb|EFI23069.1| 16S rRNA processing protein RimM [Neisseria sp. oral taxon 014 str.
F0314]
Length = 169
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRIL--KMYRK 56
M + V M I G+ G + I + P L Y L S + + L ++
Sbjct: 1 MTDTQQRVAMGYIKGVFGIKGWLKIAADTEYPDSLLDYPEWLLSKNGKTLNVVLETGKLV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
F GID+ A LR + R +F EDE++ TDL M +++G
Sbjct: 61 GDELQVKFEGIDDRDQAFALRGYTVEIPRAEFSPA--GEDEYYWTDLVGMTVVNKEGITL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA +L I+ T K LIPF + VN I D GL+
Sbjct: 119 GTVKNLMETGANDVLVIQGTD-KQILIPFVSNYIETVNHDSKTITAD---WGLD 168
>gi|42521077|ref|NP_966992.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58696689|ref|ZP_00372239.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila simulans]
gi|225630985|ref|YP_002727776.1| 16S rRNA processing protein RimM [Wolbachia sp. wRi]
gi|225677106|ref|ZP_03788108.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|59798785|sp|Q73FP4|RIMM_WOLPM RecName: Full=Ribosome maturation factor rimM
gi|254797772|sp|C0R4Z3|RIMM_WOLWR RecName: Full=Ribosome maturation factor rimM
gi|42410818|gb|AAS14926.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58537131|gb|EAL60241.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila simulans]
gi|225590865|gb|EEH12090.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225592966|gb|ACN95985.1| 16S rRNA processing protein RimM [Wolbachia sp. wRi]
Length = 168
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
D LV + I + HG+ G V + ++ P +++ Y + + +I + IAT
Sbjct: 3 DNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVIAT 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SG+++ + A LR+ KLY +R + +EDEF+ +DL +ME + + +G V VY
Sbjct: 63 ISGVNSRNEAELLRNKKLYIERSKLPELN-DEDEFYQSDLVDMEVRLKSNELYGYVKSVY 121
Query: 124 NFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
NFG+G ILEI + +K ++ FTK +N++ I+++ I ++
Sbjct: 122 NFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIVLN-IPEFID 168
>gi|323526928|ref|YP_004229081.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1001]
gi|323383930|gb|ADX56021.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1001]
Length = 244
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 69 DAVEVGAIVDAYGLKGWVKVAAHADAGRGGDALLSAKRWWLMKGRERQSAPSLQAKLHSD 128
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + +A LR ++Y R +F LE DEF+ DL +E + G G+
Sbjct: 129 SVVAHLGGVADRDAALALRGSRVYISRSEFPA--LEADEFYWVDLIGLEVVNLAGANLGK 186
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ + GA S+L ++ + LIPF V V+ +I +D
Sbjct: 187 VAGMIDNGAHSVLRVEYPAADKTGKPVAAERLIPFVGVFVKAVDQAAKQITVD 239
>gi|326318072|ref|YP_004235744.1| 16S rRNA processing protein RimM [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374908|gb|ADX47177.1| 16S rRNA processing protein RimM [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 191
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRILKM 53
V + I G+ G + Y+ +P L R+ L ++ L I +
Sbjct: 15 DAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQA 74
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A G+D+ +A LR +++ R F EDE++ DL +E +R+G
Sbjct: 75 REHSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTA--AEDEYYWVDLIGLEVVNREG 132
Query: 114 KYWGQVCGVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G + L + + E +IPF V +V++ +I++D
Sbjct: 133 VALGTVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDKVDVAGRRIVVD 186
>gi|209521546|ref|ZP_03270247.1| 16S rRNA processing protein RimM [Burkholderia sp. H160]
gi|209498016|gb|EDZ98170.1| 16S rRNA processing protein RimM [Burkholderia sp. H160]
Length = 244
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R L+ +
Sbjct: 69 DAVEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGQERRSAPSLQAKTHSD 128
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + A LR ++Y R +F LE DEF+ DL ++ + G G+
Sbjct: 129 SVVARLGGVADRDVALALRGSRVYISRSEFPA--LEADEFYWVDLIGLDVVNLAGLNLGK 186
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I + LIPF V V+ +I++D
Sbjct: 187 VASMIDNGAQSVLRIDYPATDKNGKPVAGERLIPFVGVFVKTVDQAAKQIVVD 239
>gi|39995751|ref|NP_951702.1| 16S rRNA processing protein RimM [Geobacter sulfurreducens PCA]
gi|59798803|sp|Q74FG4|RIMM_GEOSL RecName: Full=Ribosome maturation factor rimM
gi|39982515|gb|AAR33975.1| 16S rRNA processing protein RimM [Geobacter sulfurreducens PCA]
Length = 172
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNR--ELRILKMYRK 56
++ D L L+ I TTHG+ G++ + S++ + + L VL D R + +
Sbjct: 1 MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ R + + + NI+ L YA R F LEE E++ DL ++ G
Sbjct: 61 HDRVLLSLTPFTNINEVLHLISAVSYAHRDQFP--PLEEGEYYWCDLIGLQVVTAAGTVI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + + + ++ + +LIP + V++V+L+ + + P L+
Sbjct: 119 GRLDSILPTESHDVYVVRGAD-REYLIPAVEDVVVQVDLEAGTMTVSPPEGLLD 171
>gi|15895034|ref|NP_348383.1| 16S rRNA-processing protein RimM [Clostridium acetobutylicum ATCC
824]
gi|21362869|sp|Q97I95|RIMM_CLOAB RecName: Full=Ribosome maturation factor rimM
gi|15024726|gb|AAK79723.1|AE007684_11 RimM protein, required for 16S rRNA processing [Clostridium
acetobutylicum ATCC 824]
gi|325509171|gb|ADZ20807.1| 16S rRNA-processing protein [Clostridium acetobutylicum EA 2018]
Length = 166
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ + I THG+ GE+ I ++ + DN +++ + ++ + I
Sbjct: 1 MEDFFSIGQIINTHGVRGELKIYPLTDDINRFDDLDSVYVDNEIKKVISVKKQPNKLILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID + A + ++ + R+D EL+E ++F D+ FD K G+V V
Sbjct: 61 LEGIDTLDEAVKYKNKYIKVLRED--AVELKEGQYFIKDIIGCNVFDENDKDLGEVYDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ + I+ ++ L+P K VL++ ++ KI+I + L +
Sbjct: 119 STKNNDVYCIRKEGQQDILVPALKDIVLKIEIENKKIVIKAVEEWLES 166
>gi|254417860|ref|ZP_05031584.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
gi|196184037|gb|EDX79013.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
Length = 175
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNK 58
M +L+L+ IG G+ GEV + ++ +P+ L Y +L ++ L +
Sbjct: 1 MTTDSRLILVGQIGGGFGVRGEVRVTAFTADPLALTAYGPLLRADGTVALTLSATRPDKS 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I A LR LKLY R F E +EDEF+ DL +E D G+ G
Sbjct: 61 GVVGRAKEIATKEQADALRGLKLYVPRDRFP--EPDEDEFYLADLLGVEVRDTAGEVMGT 118
Query: 119 VCGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V V NFGA +LEI T+ +PFTK A E++L + +L P
Sbjct: 119 VKSVQNFGADDMLEIAPATGGPTWYLPFTKAATPELHLADGWLLAVPPTE 168
>gi|325919892|ref|ZP_08181881.1| 16S rRNA processing protein RimM [Xanthomonas gardneri ATCC 19865]
gi|325549601|gb|EGD20466.1| 16S rRNA processing protein RimM [Xanthomonas gardneri ATCC 19865]
Length = 170
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ I+S+ + RY + S + L +
Sbjct: 1 MKQTERRILLGRVAGAFGVKGELKIESWTEPRSAIFRYQPWILRTPSGEESTLSGARGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K +ATF + + + + +++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKHLVATFPSVSDRDTVEAMHGIEIYVSRSVLPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ L+PF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVMVVR--GDRERLVPFVLPDFVKSVDFEANLIVVD 165
>gi|225463376|ref|XP_002271571.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297740629|emb|CBI30811.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSNDN----RELRILKMYR 55
+ V + I + HGL GE+ + + P R++ RE+ +++
Sbjct: 75 SEFVEVGYISSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVELVEGRG 134
Query: 56 K--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K +I F GID + A +L L + D ELEE EF++ DL M ++
Sbjct: 135 HPGQKTWILKFGGIDTVEEAKQLVGSSLLVREDDRP--ELEEGEFYSRDLLGMRVTLKET 192
Query: 113 GKYWGQVCGVYNFGAGSILEI------------------KNTMEKTFLIPFTKFAVLEVN 154
G+ G V V++ GA +L++ +PF + V V+
Sbjct: 193 GEPVGTVVNVFSTGANDLLQVMLDPSVKTPDHTGNPKSETGVSGPLVWVPFVEAIVPNVD 252
Query: 155 LQENKILIDPIAAGLN 170
+ + ++ I P L
Sbjct: 253 MNKREMQITPPKGLLE 268
>gi|190571183|ref|YP_001975541.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018585|ref|ZP_03334393.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|209573628|sp|B3CLX1|RIMM_WOLPP RecName: Full=Ribosome maturation factor rimM
gi|190357455|emb|CAQ54889.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995536|gb|EEB56176.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 166
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI-LKMYRKNKRFIATFSG 66
+ + I + HG+ G V I ++ P ++ Y + + +I L N IAT SG
Sbjct: 3 ICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATISG 62
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ + A LR+ KLY +R +EDEF+ DL ME + +G V V+NFG
Sbjct: 63 VNSRNEAELLRNKKLYIERNKLPQLN-DEDEFYQNDLVNMEVRLESNELYGYVKSVHNFG 121
Query: 127 AGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+G ILEI + +K ++ FTK +N++E I+I+
Sbjct: 122 SGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINMPE 162
>gi|207743715|ref|YP_002260107.1| 16s rrna processing protein rimm [Ralstonia solanacearum IPO1609]
gi|206595114|emb|CAQ62041.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
IPO1609]
Length = 184
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----------SNDNRELRILKM 53
D LV + +G +G+ G + + + + L+ + S+D R L +
Sbjct: 12 PDDLVEVGYVGGAYGIRGWIKVQPHGDAEALLHAGTWWLKPAAGAPAVSSDWRVLPVGTS 71
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ R DF +DEF+ DL + Q
Sbjct: 72 REHSGSVVAGSPAVPDRNVAEALRGCAVWVSRADFPAP--ADDEFYWVDLIGSAVVNEQQ 129
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 130 ESLGTVAGLLDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 183
>gi|153831521|ref|ZP_01984188.1| 16S rRNA processing protein RimM [Vibrio cholerae 623-39]
gi|148872997|gb|EDL71132.1| 16S rRNA processing protein RimM [Vibrio cholerae 623-39]
Length = 148
Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M K ++ +++ +G+++G+ G + + SY +NP + Y + + E ++ R
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
NK ++ G+D A L + ++ EL EDEF+ +L M+ G
Sbjct: 69 NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLP--ELSEDEFYWRELFGMQVVTTNGYDL 126
Query: 117 GQVCGVYNFGAGSILEIKNTME 138
G V + G+ +L +K ++
Sbjct: 127 GVVTDMMETGSHDVLVVKANLK 148
>gi|227543209|ref|ZP_03973258.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181018|gb|EEI61990.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51866]
Length = 227
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------SNDNRELRILKMY 54
M ++ + + THG+ GEV +D ++ ++L I M
Sbjct: 56 MATME--YRIGRVVKTHGIKGEVVVDPTTDDLDQRFYVGAVLTGRAGGGKEQQLTIQSMR 113
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
R + F I + + LR ++ +A + EED +++ +LE + +G
Sbjct: 114 PHQGRLLVKFEEIPDRTAGESLRGMQFFAPPLEHDP---EEDGYYDHELEGLAVI-HEGT 169
Query: 115 YWGQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + + A ++L + + E+ LIP V E+NL E I P L+
Sbjct: 170 RVGEVTDITHGPAATLLTVTMDEDERDVLIPLVDAIVPEINLGEKTATITPPDGLLD 226
>gi|162382795|ref|YP_454227.2| 16S rRNA-processing protein [Sodalis glossinidius str. 'morsitans']
Length = 182
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+ +G+ G + + S + Y + + + + + + R N+ I
Sbjct: 12 EPVVVGKMGSAYGIRGWLRVFSSTEEAESIFDYQPWFIKRAREWQPIGLESWKRHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I++ +A+ L + ++ D L+ E++ DL + G G+V
Sbjct: 72 IKVRDIEDREAATLLTNCEIVVDASQLPD--LDSGEYYWKDLLGCQVVTVGGYQLGEVID 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L +K ++ + LIPF + V+L + I +D
Sbjct: 130 LMETGSNDVLVVKANLKDAFGIQERLIPFLDGKVIKNVDLAAHIIEVDWDPG 181
>gi|300692087|ref|YP_003753082.1| 16S rRNA processing protein [Ralstonia solanacearum PSI07]
gi|299079147|emb|CBJ51815.1| 16S rRNA processing protein [Ralstonia solanacearum PSI07]
Length = 213
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKM 53
D LV + +G +G+ G + + + L + + L +D R L +
Sbjct: 41 PDDLVEVGYVGGAYGIRGWIKVQPLGDAEALLHASTWWLKPAAGAPAVPSDWRVLPVGTS 100
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ +R DF +DEF+ DL + Q
Sbjct: 101 REHSGSVVAGSPAVPDRNVAEALRGCAVWVRRADFPAP--ADDEFYWVDLIGSIVVNEQQ 158
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ +I++D GL+
Sbjct: 159 ETLGTVAGLIDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|188992534|ref|YP_001904544.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
campestris str. B100]
gi|229890157|sp|B0RXD8|RIMM_XANCB RecName: Full=Ribosome maturation factor rimM
gi|167734294|emb|CAP52504.1| 16S rRNA processing protein RimM [Xanthomonas campestris pv.
campestris]
Length = 170
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + S L ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRTPSGQESVLSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F I + + + ++Y R + DE++ DLE ++ +G
Sbjct: 61 QGKNLIAVFPDITDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEGLQVETVEGIK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGAVSHLFSTGSNDVVVVR--GDRERMIPFVLPEYVKSVDFEANLIVVD 165
>gi|270264056|ref|ZP_06192324.1| 16S rRNA processing protein RimM [Serratia odorifera 4Rx13]
gi|270042249|gb|EFA15345.1| 16S rRNA processing protein RimM [Serratia odorifera 4Rx13]
Length = 182
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 73/170 (42%), Gaps = 12/170 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +G+T+G+ G + + S N + Y + + + + + R ++ I
Sbjct: 14 IVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQWQLVELEDWKRHSQDLIIK 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ +A+ L + ++ + ELE D+++ DL + G G+V +
Sbjct: 74 VKGVDDRDAANLLTNREIVVDSEQLP--ELEGDDYYWKDLMGCQVVTTTGYELGKVVDMM 131
Query: 124 NFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
G+ ++ +K ++ K L+PF + +V+L I D
Sbjct: 132 ETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTARVIEADWDPG 181
>gi|262363071|gb|ACY59792.1| 16S rRNA processing protein [Yersinia pestis D106004]
Length = 169
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 70/164 (42%), Gaps = 12/164 (7%)
Query: 14 GTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDN 69
G+T+G+ G + + S N + Y + + + + + R ++ I G+D+
Sbjct: 7 GSTYGIRGWLRVFSSTENAESIFDYQPWFIQQAGKWQHVELEDWKRHSQDLIIKVKGVDD 66
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
+A+ L + ++ LEED+++ DL + G G++ + G+
Sbjct: 67 REAANLLTNCEIIVDSTQLPA--LEEDDYYWKDLMGCQVVTTTGYELGKIIDMMETGSND 124
Query: 130 ILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
++ +K ++ K L+PF + +V+L ++ +D
Sbjct: 125 VMVVKANLKDAFGMKERLVPFLHGQVIKKVDLTAQRVEVDWDPG 168
>gi|119899189|ref|YP_934402.1| 16S rRNA processing protein [Azoarcus sp. BH72]
gi|166226423|sp|A1K9L0|RIMM_AZOSB RecName: Full=Ribosome maturation factor rimM
gi|119671602|emb|CAL95515.1| conserved hypothetical 16S rRNA processing protein [Azoarcus sp.
BH72]
Length = 168
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRE-----LRILKMYRKN 57
++++ I G+ G + I + ++P + ++ D E ++
Sbjct: 1 MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +A G+ + ++A + + A R E +DE++ DL ++ + + G
Sbjct: 61 KGLVALLEGVPDRNAAEAIEGRYVGAPRDAMPAPE--KDEYYWGDLVGLDVVNETDETLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+V G+ + GA +L++++ E LIPF VL+V+L +I +
Sbjct: 119 RVSGLISTGAHDVLQVED-GETERLIPFVAAYVLDVDLAARRIRV 162
>gi|58698384|ref|ZP_00373297.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535097|gb|EAL59183.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 168
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIAT 63
D LV + I + HG+ G V + ++ P +++ Y + + +I + IAT
Sbjct: 3 DNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVIAT 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SG+++ + A LR+ KLY +R + +EDEF+ +DL +ME + + +G V VY
Sbjct: 63 ISGVNSRNEAELLRNKKLYIERSKLPELN-DEDEFYQSDLVDMEVRLKSNELYGYVKSVY 121
Query: 124 NFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
NFG+G ILE+ + +K ++ FTK +N++ I+++ I ++
Sbjct: 122 NFGSGDILEVLVISTKKRIMLSFTKEIFPHINIKGRYIVLN-IPEFID 168
>gi|300858744|ref|YP_003783727.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|300686198|gb|ADK29120.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302206451|gb|ADL10793.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
C231]
gi|302331007|gb|ADL21201.1| 16S rRNA-processing protein [Corynebacterium pseudotuberculosis
1002]
gi|308276693|gb|ADO26592.1| 16S rRNA-processing protein [Corynebacterium pseudotuberculosis
I19]
Length = 167
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRE--LRILKMYRKNKRFIA 62
+++ + +HG+ GEV ++ ++P + + +E L I R +
Sbjct: 3 LMIGRVVKSHGIKGEVAVEVTTDDPDIRFAVGEVLNGKQGKKEHRLTISTGRVHQGRLLI 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + +A LR + +A K+++ +E F++ +LE + ++G+ G+V GV
Sbjct: 63 KFEEIPDRTAADSLRGTQFFA--APLKNDDGDEG-FYDHELEGLGVI-QEGEKIGEVTGV 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ AG ILE+K T K LIPF V EVNL+E I P L
Sbjct: 119 MHGPAGEILEVKLTEGKQVLIPFVHAIVPEVNLEEGTCTITPPDGLLE 166
>gi|297242900|ref|ZP_06926838.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
gi|296889111|gb|EFH27845.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
Length = 199
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 18 NDLLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWI 77
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-------K 114
F N + A L +LY +D ++ E+ ++ DL ++ + K
Sbjct: 78 LLFEESQNRNDAEALNGTELYVHAEDAQELA-AENAWYIKDLVGLQARLCEENQLGLTPK 136
Query: 115 YWGQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + GA S+L+I+ + KT L+PF + V EV++ + IDP +
Sbjct: 137 VIGKVVDVLD-GAQSLLKIRLDHPIDEENKTALVPFVEAIVPEVDVANGYLTIDPPGGLI 195
>gi|152965368|ref|YP_001361152.1| 16S rRNA processing protein RimM [Kineococcus radiotolerans
SRS30216]
gi|209573564|sp|A6W7U9|RIMM_KINRD RecName: Full=Ribosome maturation factor rimM
gi|151359885|gb|ABS02888.1| 16S rRNA processing protein RimM [Kineococcus radiotolerans
SRS30216]
Length = 174
Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 5/173 (2%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
++A +G HG+ GEV ++ ++P + D L + N + TF
Sbjct: 4 VVARVGRPHGVRGEVTVEVRTDDPDTRFAPGAVLRTDPDRGPLTVATARWHNGTLLLTFQ 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+++ + LR+ +L D D + + ++ L+ + G G V +
Sbjct: 64 GVEDRTAVEGLRNTRLVVDLDDEADPDDDA--WYPHQLQGLAAVTTTGTPLGTVKDLLTG 121
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
GA +L + T + L+PF V V+++ K+++ P + +
Sbjct: 122 GAQDVLVVTGTDGREVLVPFVTPLVPRVDVKRGKVVLSPPGGLFVELPGEPEE 174
>gi|257055029|ref|YP_003132861.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
gi|256584901|gb|ACU96034.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
Length = 174
Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN------RYVLYSNDNRELRILKMYRKNKRFI 61
V++ I HG+ GEV +D ++P + + R L + + R +
Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKMRDGRTRPLTVAAVRPHGGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + + +A E+R L + + + DEF++ +LE + G G V
Sbjct: 63 VRFLEVPDRTAAEEIRGATLLIDVDELPPID-DPDEFYDHELEGLRAELDDGTVVGTVRE 121
Query: 122 VYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G +L + ++ + L+PF V V + +I++DP L+
Sbjct: 122 VVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDPPEGLLD 173
>gi|57234665|ref|YP_181309.1| 16S rRNA processing protein RimM [Dehalococcoides ethenogenes 195]
gi|109893011|sp|Q3Z8Z0|RIMM_DEHE1 RecName: Full=Ribosome maturation factor rimM
gi|57225113|gb|AAW40170.1| 16S rRNA processing protein RimM [Dehalococcoides ethenogenes 195]
Length = 167
Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M + ++ +L+ + G+NG + I+ + P + I + + +
Sbjct: 1 MTQEEEYILIGKVLGVWGINGGLKIEVLTDFPERFDAGNELLIGRAPYTISQTSWQKAQV 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I S I I +A EL ++ K +L + +++ L +E D G GQ+
Sbjct: 61 IVHLSEITGIDAAEELSGAQVEIPAAALK--KLPKGVYYDFQLIGLEVTDLSGNRIGQIK 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + I + + K LIP K V E+NLQ+ +++IDPI L+
Sbjct: 119 EILHMPSNDIY-VSSYGAKEALIPAVKDVVKEINLQKGQVIIDPIPGLLD 167
>gi|300114670|ref|YP_003761245.1| 16S rRNA processing protein RimM [Nitrosococcus watsonii C-113]
gi|299540607|gb|ADJ28924.1| 16S rRNA processing protein RimM [Nitrosococcus watsonii C-113]
Length = 175
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSND-NRELRILKMYRKNKRF 60
++ VL+ I +G+ G + + SY +N +D + L N + R++K + K
Sbjct: 11 ERYVLVGRISGLYGVQGWLRVYSYTQSRDNILDYEPWYLRQNGAWQARRLMKGRVQGKGI 70
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID A+ ++ R E E E++ DL ++ QG+ GQV
Sbjct: 71 VVALEGIDERDVAALWVGCEIAVHRNQLPPPE--EGEYYWADLIGLQVITVQGEVLGQVD 128
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
+ GA +L ++ E+ L+PF V +V+LQ+ + +D
Sbjct: 129 RLLETGANDVLVVR--GERERLLPFLMGMIVKQVDLQQGLLTVD 170
>gi|241763736|ref|ZP_04761784.1| 16S rRNA processing protein RimM [Acidovorax delafieldii 2AN]
gi|241367041|gb|EER61426.1| 16S rRNA processing protein RimM [Acidovorax delafieldii 2AN]
Length = 189
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMY 54
V + I G+ G + S++ +P L R+ L ++ L+I +
Sbjct: 15 DAVEVGRIADAWGVKGWFKVLSHSASPEALFSSKRWYLQPSERGAKTFSGTALLQIRQAK 74
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ +A GID+ +A LR +++ R F EDE++ DL ++ +R+G
Sbjct: 75 DHSDTVVAWAQGIDDRDAAEALRGARIFVPRSSFPSTT--EDEYYWVDLIGLQVVNREGV 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILID 163
G V + + G ++L + + +IPF V +V+L E +I +D
Sbjct: 133 ALGLVRELMSTGPQTVLVLAYEQDGKALERMIPFVSAFVDKVDLPEKRITVD 184
>gi|161511002|ref|YP_087633.2| 16S rRNA-processing protein [Mannheimia succiniciproducens MBEL55E]
Length = 175
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFS 65
+ +G+T+G+ G + I S N + Y + + + + + N I
Sbjct: 9 VGKLGSTYGIRGWLRIYSSTENAESIFDYQPWFLKIKDQWQAIELETWKHHNHELIVKLK 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I++ +A L ++++ F LEE +F+ DL + + QG G V +
Sbjct: 69 NINDRETAQTLANVEIGVDLSVFPA--LEEGDFYWHDLIGCQVVNLQGYAMGTVSEMMET 126
Query: 126 GAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF + V V+L I +D A
Sbjct: 127 GSNDVLVVRANAKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAG 174
>gi|254776207|ref|ZP_05217723.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 175
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + HG++GE+ ++ ++P L R I R
Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARLAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+ + +A LR + D + E D +++ LE ++ G+ G V
Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGRRVGAVA 121
Query: 121 GVYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L +++ + + L+PF V V+L++ I IDP L+
Sbjct: 122 EVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLEDGLIEIDPPDGLLD 174
>gi|254556544|ref|YP_003062961.1| 16S rRNA processing protein [Lactobacillus plantarum JDM1]
gi|254045471|gb|ACT62264.1| 16S rRNA processing protein [Lactobacillus plantarum JDM1]
Length = 174
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL---------YSNDNRELRILKMYRK 56
+ T+ THG+ GEV + + P + + + ++I K +
Sbjct: 2 DYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKAREQ 61
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G+DNI+ + + + L E++ + ++ +
Sbjct: 62 KGLYFLTFEGLDNINDVERYKGWTIKVPAEAL--HPLPAGEYYYHQIVGLQVVTTADEPL 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + GA + +K + L+P + +V+L + ++ + ++
Sbjct: 120 GTIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLDAGVVTVELMEGLID 174
>gi|118463723|ref|YP_882934.1| 16S rRNA-processing protein RimM [Mycobacterium avium 104]
gi|166226451|sp|A0QJ46|RIMM_MYCA1 RecName: Full=Ribosome maturation factor rimM
gi|118165010|gb|ABK65907.1| 16S rRNA processing protein RimM [Mycobacterium avium 104]
Length = 175
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + HG++GE+ ++ ++P L R I R
Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+ + +A LR + D + E D +++ LE ++ G+ G V
Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGQRVGAVA 121
Query: 121 GVYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L +++ + + L+PF V V+L + I IDP L+
Sbjct: 122 EVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLD 174
>gi|238022961|ref|ZP_04603387.1| hypothetical protein GCWU000324_02883 [Kingella oralis ATCC 51147]
gi|237865769|gb|EEP66907.1| hypothetical protein GCWU000324_02883 [Kingella oralis ATCC 51147]
Length = 169
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL-RILKMYRK 56
M V M I G+ G + + S Y ++ +D ++ L L +
Sbjct: 1 MSNTQNWVAMGYIKGAFGIKGWIKVQSNTEYTDSLLDYPQWRLSKGKEHILAEVESGKMA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I + +A+ LR + R+ F+ E E E++ DL M +R+G +
Sbjct: 61 GDELQVKLAHIHDRDAAALLRGYTIEVPREQFEPTE--EGEYYWADLVGMAVKNREGIHL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA IL ++ LIPF + + V+ + +I D GL+
Sbjct: 119 GEVINLMETGAHDILIVRGEHG-EKLIPFVEQFIDNVDNENRQITCD---WGLD 168
>gi|86606190|ref|YP_474953.1| 16S rRNA-processing protein RimM [Synechococcus sp. JA-3-3Ab]
gi|109893059|sp|Q2JUD0|RIMM_SYNJA RecName: Full=Ribosome maturation factor rimM
gi|86554732|gb|ABC99690.1| 16S rRNA processing protein RimM [Synechococcus sp. JA-3-3Ab]
Length = 186
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRI----LKMYRKNK 58
+L+ + HGL G + + +++ P L R++ +D L + +
Sbjct: 9 WLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKG 68
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ GI + +A K+ LE +E+ +DL + + QG+ G
Sbjct: 69 LYLVRLEGIPDRTAAEAWVGAKVLVPASQ--RLPLEPEEYHYSDLIGLAVY-HQGRLLGH 125
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V ++ G +LEI ++ LIPF K V V+L++ ++ + P + + ++
Sbjct: 126 VSAIWAAG-QDVLEIATPDKRQVLIPFVKALVPVVDLEKGELQVQPPPGLVESFLGQDRA 184
Query: 179 Y 179
Sbjct: 185 R 185
>gi|315038604|ref|YP_004032172.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
gi|312276737|gb|ADQ59377.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
Length = 171
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 6 VAKILTTHGLNGEVKVNVITDFPEDRFAEGMQLALKADTDRILTIKKSRPFKQFWLLQFD 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EVNDIDEAEKLRGQILVVSEDN--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVSNKKVYVELMEGLRDED 171
>gi|308177296|ref|YP_003916702.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
gi|307744759|emb|CBT75731.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
Length = 180
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + P + ++ + L + + +
Sbjct: 3 LQVARIGKPHGIRGEVTAQVMTDTPDERFTSGEELIVVDGPVKTLTVKSARWNKTILLLS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I++ + A LR +L + + E + DE++ +L +++ G+ G + +
Sbjct: 63 FKEINDRNQAETLRGARLEIDVSE--EPEDDSDEWYEHELLDLKVML-DGEQVGVITALR 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
A +L +N+ + +PF V E++ + ++I P A L
Sbjct: 120 TNPAQDLLVFENSEGQEIYLPFVDEFVPEIDPEAGIVVITPPAGLL 165
>gi|254821201|ref|ZP_05226202.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare ATCC
13950]
Length = 171
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 9/170 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + HG+ GE+ ++ ++P L R+ + R
Sbjct: 3 LTVGRVVKAHGIGGEIVVEIRTDDPDARFATGNALRGKASRGGGERDFVVESAREHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +GI + +A LR D + E D +++ +LE + G+ G V
Sbjct: 63 LVRLAGISDRDAADALRGTLFVVDSDDLPPID-EADTYYDHELEGLHVRTITGRDVGVVA 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ L+PF V V+L + I IDP L+
Sbjct: 122 EVLHTAAGELLAVRRESG-EALVPFVTAIVTSVSLDDGTIEIDPPEGLLD 170
>gi|238854765|ref|ZP_04645095.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|260663997|ref|ZP_05864850.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
gi|282933843|ref|ZP_06339191.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|313472282|ref|ZP_07812774.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|238832555|gb|EEQ24862.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|239529873|gb|EEQ68874.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|260561883|gb|EEX27852.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
gi|281301932|gb|EFA94186.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
Length = 170
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+A + T+HGL GEV + + P + +D R+L + + ++ TF
Sbjct: 6 VAQVLTSHGLKGEVKVKVITDFPEQRFCEGVKLFIKDDMRQLTVESGRPFKQFWLVTFKE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I+ A L L +D ++L E ++ + + D + + G+V +
Sbjct: 66 IKDINEAESLFGKTLVISEED--QDQLPEGHYYYHQIIGLSVVDNETDELIGKVTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I ++ + K F +P+ V VNL + ++ ++ + +
Sbjct: 124 GANDIWQVTPKVGKPFWLPYVSSFVKSVNLDKGEVRVELMEGLRDED 170
>gi|227549005|ref|ZP_03979054.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227078915|gb|EEI16878.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
Length = 182
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRFIA 62
+L+ + +HG+ GEV ++ ++P REL I + R +
Sbjct: 19 LLIGKVVKSHGIKGEVAVEVLTDDPDQRFAVGEVLTGRQPGKERELTIKTLRPHQNRLLM 78
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+F + + A LR ++ +A + +D + +EF++ +L ++ +G+ G+V GV
Sbjct: 79 SFEEVPDRTQADSLRGMQFFAPPLERED---DSEEFYDHELIGLKVI-HEGREVGEVTGV 134
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ ILEI + + L+PF V E++L E + I P L+
Sbjct: 135 MDTPNRKILEI-DYDGREVLVPFVIDFVPEIDLGEQTLTITPPEGLLD 181
>gi|298253303|ref|ZP_06977095.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
gi|297532698|gb|EFH71584.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
Length = 197
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ L+ + IG GL GEV + + + P + + ++ RE I R+I
Sbjct: 16 NDLLRVCRIGKAQGLKGEVTVQIFTDEPYERFEPGNVLCTADGEREFVIENARTFKNRWI 75
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-------K 114
F N + A L +LY +D ++ E+ ++ DL ++ + K
Sbjct: 76 LLFEESQNRNDAEALNGTELYVHAEDAQELA-AENAWYIKDLVGLQARLCEENQLGLTPK 134
Query: 115 YWGQVCGVYNFGAGSILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + GA S+L+I+ + KT L+PF + V EV++ + I+P +
Sbjct: 135 IIGKVVDVLD-GAQSLLKIRLDHPVDEEHKTALVPFVEAIVPEVDVANGYLTINPPGGLI 193
>gi|169830843|ref|YP_001716825.1| 16S rRNA processing protein RimM [Candidatus Desulforudis
audaxviator MP104C]
gi|238688234|sp|B1I2N0|RIMM_DESAP RecName: Full=Ribosome maturation factor rimM
gi|169637687|gb|ACA59193.1| 16S rRNA processing protein RimM [Candidatus Desulforudis
audaxviator MP104C]
Length = 170
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 6/168 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
++L+L+ I T G G V + + P R Y+ R + I ++ +
Sbjct: 3 EELILIGEIVNTQGHRGAVRVLPLTDFPERFRRLKSVYLEQGPVRRLVHIGRVSYHKRFV 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I ++++A +L+ +L R + L + + D+ FD +G+Y G V
Sbjct: 63 ILEFREIPDMNAAEKLKGAQLKIHRSEL--VPLPDGHHYVFDIVGSSVFDAEGEYLGVVE 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + +K+ + L+P K V +++L +I +
Sbjct: 121 DVLRTGANDVYVVKSGEGDSLLVPALKTVVRDIDLARRRITVVLPEGL 168
>gi|241759337|ref|ZP_04757443.1| 16S rRNA processing protein RimM [Neisseria flavescens SK114]
gi|241320473|gb|EER56770.1| 16S rRNA processing protein RimM [Neisseria flavescens SK114]
Length = 169
Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRIL--KMYR 55
M K V M I G+ G + I + Y ++ +D + L D + L ++
Sbjct: 1 MTDTQKRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQLC-KDGKTLNVVLEAGKI 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F E EDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFAPTE--EDEYYWADLVGMTVINKENIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L IK + LIPF + V+ I+ D GL+
Sbjct: 118 LGKVSNLMETGANDVLMIKGEHGQ-ILIPFVSNYIESVDTDSKTIITD---WGLD 168
>gi|41409073|ref|NP_961909.1| 16S rRNA-processing protein [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|59798798|sp|Q73VN8|RIMM_MYCPA RecName: Full=Ribosome maturation factor rimM
gi|41397432|gb|AAS05292.1| RimM [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 175
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRELRILKMYRKNKRF 60
+ + + HG++GE+ ++ ++P L R I R
Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +G+ + +A LR + D + E D +++ LE ++ G+ G V
Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDID-EPDTYYDHQLEGLQVRTTGGRRVGAVA 121
Query: 121 GVYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L +++ + + L+PF V V+L + I IDP L+
Sbjct: 122 EVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLD 174
>gi|325957085|ref|YP_004292497.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
gi|325333650|gb|ADZ07558.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
Length = 171
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV ++ + P D + L ++ +R L I K + ++ F
Sbjct: 6 VAKILTTHGLNGEVKVNVITDFPEDRFAEGIQLALKADTDRILTIKKSRPFKQFWLLQFD 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
+++I A +LR L + EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EVNDIDEAEKLRGQILVVSEDN--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDDGKEYWIPNIADVVKKVDVSNKKVYVELMEGLRDED 171
>gi|184155698|ref|YP_001844038.1| 16S rRNA-processing protein RimM [Lactobacillus fermentum IFO 3956]
gi|238692980|sp|B2GD26|RIMM_LACF3 RecName: Full=Ribosome maturation factor rimM
gi|183227042|dbj|BAG27558.1| 16S rRNA processing protein RimM [Lactobacillus fermentum IFO 3956]
Length = 169
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSND-NRELRILKMYRKNKR 59
+L + I THG+ GEV + + + Y++ + EL +
Sbjct: 2 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L D ELEE +++ + + G+ G++
Sbjct: 62 VLVKFKQFNNINEVQHFRDAELKV--ADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + + + L+P V EV+L K++++ +
Sbjct: 120 KEILAPGANDVWVVDRKQKTDLLLPVIDDVVKEVDLAGGKVIVELLEGL 168
>gi|28378336|ref|NP_785228.1| 16S rRNA processing protein [Lactobacillus plantarum WCFS1]
gi|300767273|ref|ZP_07077185.1| 16S rRNA processing protein RimM [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180487|ref|YP_003924615.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|38258523|sp|Q88WJ3|RIMM_LACPL RecName: Full=Ribosome maturation factor rimM
gi|28271171|emb|CAD64076.1| 16S rRNA processing protein [Lactobacillus plantarum WCFS1]
gi|300495092|gb|EFK30248.1| 16S rRNA processing protein RimM [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045978|gb|ADN98521.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 174
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL---------YSNDNRELRILKMYRK 56
+ T+ THG+ GEV + + P + + + ++I K +
Sbjct: 2 DYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKAREQ 61
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ TF G+DNI+ + + + L E++ + ++ +
Sbjct: 62 KGLYFLTFEGLDNINDVERYKGWTIKVPAEALHA--LPAGEYYYHQIVGLQVVTTADEPL 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + GA + +K + L+P + +V+L + ++ + ++
Sbjct: 120 GTIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLDAGVVTVELMEGLID 174
>gi|42568351|ref|NP_568663.2| 16S rRNA processing protein RimM family [Arabidopsis thaliana]
gi|10177579|dbj|BAB10810.1| unnamed protein product [Arabidopsis thaliana]
gi|332008000|gb|AED95383.1| RimM-like 16S rRNA processing protein [Arabidopsis thaliana]
Length = 653
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYRK 56
LV + + HGL GE+ I + P L + +L + E+ +++
Sbjct: 79 DLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQQLLGQDKIDEVELVEGRPH 138
Query: 57 --NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
K +I F G+D++ +L L A+ D EL+E EF++ DL M ++ G
Sbjct: 139 PAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRP--ELDEGEFYSRDLVGMRVLLKETG 196
Query: 114 KYWGQVCGVYNFGAGSIL--------EIKNTMEKT---FLIPFTKFAVLEVNLQENKILI 162
+ G V +++ G +L E+ N KT IPF V +V+L+ ++ I
Sbjct: 197 QLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTNQLVWIPFVDAIVPDVDLERKEMYI 256
Query: 163 DPIAAGLN 170
P L
Sbjct: 257 TPPKGLLE 264
>gi|288942188|ref|YP_003444428.1| 16S rRNA processing protein RimM [Allochromatium vinosum DSM 180]
gi|288897560|gb|ADC63396.1| 16S rRNA processing protein RimM [Allochromatium vinosum DSM 180]
Length = 169
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFS 65
+++ + +G+ G V + S + + RY L D R+ + K +A
Sbjct: 10 IVLGRVSGLYGVKGWVKVYSETDPREGILRYSPWLLGPDGVARRVAEGRMHGKGLVARLD 69
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G ++ A+ L ++ +R DEF+ DLE + + G +G+V +++
Sbjct: 70 GCEDRDQAAALIGQEIAIRRDQLPPPR--PDEFYWIDLEGLAVVTQAGVEFGRVSHLFST 127
Query: 126 GAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
GA +L ++ E+ LIPF +L+V+ + I +D
Sbjct: 128 GANDVLVVQ--GERERLIPFVWGDVILDVDFDQRLIRVD 164
>gi|219854643|ref|YP_002471765.1| hypothetical protein CKR_1300 [Clostridium kluyveri NBRC 12016]
gi|219568367|dbj|BAH06351.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 166
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+ + + I THGL GE+ + ++ + I ++K+ I
Sbjct: 4 SMKDFITVGQIINTHGLKGELKVYPLTDDINRFKELKSVYVEGILKNITGCKLQSKKVIL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+I A E + L R++ +LEE +F D+ D +G ++G++ V
Sbjct: 64 KIEGIDSIEKALEYKGKYLEVSREN--AVKLEEGRYFIVDIVGCRVIDEEGVFYGKISEV 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + IK + LIP + VL+V++++ +I+I P+ +
Sbjct: 122 IHTHRNDVYWIK--GDNELLIPAIENVVLKVDVEKQEIIIKPVETWM 166
>gi|166713047|ref|ZP_02244254.1| 16S rRNA-processing protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 170
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVISGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F G+ + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPGVADRDTVEAMHGTEIYVARGALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|149377071|ref|ZP_01894821.1| 16S rRNA processing protein RimM [Marinobacter algicola DG893]
gi|149358607|gb|EDM47079.1| 16S rRNA processing protein RimM [Marinobacter algicola DG893]
Length = 175
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M + + ++ I + G+ G + + SY + + Y ++++ R+ + R+
Sbjct: 1 MAQHSQETVIGQITSVFGVKGWLKVYSYTDPKDGILNYRDWTLVHNGKRIPARLEEGRRQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + GID+ A + + +L E E++ LE ++ F +G+
Sbjct: 61 GQGIVVRLKGIDDRELARSYCGADVIVSTAELP--QLPEGEYYWHQLEGLDVFTTEGECL 118
Query: 117 GQVCGVYNFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V + G+ +L ++ T ++ LIP+ V V+L ++++ D
Sbjct: 119 GKVHHLIETGSNDVLVVRATDASIDQRERLIPYLPDQVVRSVDLAGSRLVAD 170
>gi|310658881|ref|YP_003936602.1| 16S rRNA-processing protein rimm [Clostridium sticklandii DSM 519]
gi|308825659|emb|CBH21697.1| putative 16S rRNA-processing protein rimM [Clostridium sticklandii]
Length = 168
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIA 62
+ + I THGL GEV + Y + P Y+ N + ++ + + I
Sbjct: 3 SNKLRIGKIVNTHGLKGEVKVYPYTDYPERFKEIQYLYMENSDEKISVENVKISKNMVIL 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
S I I A + R+ L+ R + +L+EDE DL + +D KY G + V
Sbjct: 63 KLSNILTIDDAEKNRNNYLFIDRDN--ARKLDEDEHLIADLIGCKVYDVSEKYIGVLEDV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A + IK+ KT+L+P K V +++ KI+IDPI +
Sbjct: 121 LQYSANDVYSIKSENGKTYLVPAIKKFVPVIDIDNKKIIIDPIEGMIE 168
>gi|229818298|ref|ZP_04448579.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098]
gi|229784168|gb|EEP20282.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098]
Length = 204
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG G+ GEV + + + P + + N + + + R+I
Sbjct: 14 ELLRVCRIGRAQGMKGEVTVQVFTDEPEWRFEPGSELFSRNGEQRYVVERSRTFKNRWII 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
G D+ +++ L +LY + D ++ LE DE++ DL +E + GK
Sbjct: 74 KLEGCDDRNASEALNGTELYGEADD-PEDMLEADEWYPKDLIGLEARMDEENEIGAPAGK 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
G V V + A S+L+I+ T EKT L+PF V ++L+E +
Sbjct: 133 PIGMVVDVIDSPAQSLLKIRLTEPVETGTASDGTPIVEKTTLVPFVDELVPLIDLEEGYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|37521074|ref|NP_924451.1| 16S rRNA-processing protein RimM [Gloeobacter violaceus PCC 7421]
gi|46577644|sp|Q7NKH3|RIMM_GLOVI RecName: Full=Ribosome maturation factor rimM
gi|35212070|dbj|BAC89446.1| gll1505 [Gloeobacter violaceus PCC 7421]
Length = 181
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMY--RK 56
+ + + + + GL GEV + + L R +D R R+
Sbjct: 1 MQQWLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPG 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
F+ F G++ ++A +L L+ + L EF+ DL + F + G+
Sbjct: 61 KDLFVCRFEGVEERNAAEKLVGSTLWIGAAERPV--LAAGEFWLPDLMGVRVFRQDTGEA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V + G +L I+ + KT ++PF V V+L+ +I + I L+ +
Sbjct: 119 IGEVSDMTRAG-NDLLVIRLSGGKTVMVPFVHALVPVVDLEAGRIEVVAIPGLLDPEAAE 177
Query: 176 NPQ 178
+
Sbjct: 178 ADE 180
>gi|297539670|ref|YP_003675439.1| 16S rRNA processing protein RimM [Methylotenera sp. 301]
gi|297259017|gb|ADI30862.1| 16S rRNA processing protein RimM [Methylotenera sp. 301]
Length = 189
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKNKRFIA 62
+V+M I +G+ G + I + D + + L +D RE+ + N +
Sbjct: 11 MVVMGRIVAPYGVFGWLKIVPDTEAFDGLFDYDTWWLGKGDDWREMVVETAKTHNDVLVV 70
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+ +A + ++ R+ E EE+E++ +DL + ++Q +G + V
Sbjct: 71 KLKGIDDRDAALACKGKQIAVPREQLP--EAEENEYYWSDLIGLRVKNKQDVDFGLIVDV 128
Query: 123 YNFGAGSILEIK---------------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ GA ++ ++ + LIPF VLEV+L +L+D
Sbjct: 129 FETGANDVIAVRADVIQSEDSTVKAVAKEKPQERLIPFIDDVVLEVDLAAKTMLVD 184
>gi|260663079|ref|ZP_05863972.1| 16S rRNA processing protein RimM [Lactobacillus fermentum 28-3-CHN]
gi|260552700|gb|EEX25700.1| 16S rRNA processing protein RimM [Lactobacillus fermentum 28-3-CHN]
Length = 169
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSND-NRELRILKMYRKNKR 59
+L + I THG+ GEV + + + Y++ + EL +
Sbjct: 2 ELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGL 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F +NI+ RD +L D ELEE +++ + + G+ G++
Sbjct: 62 VLVKFKQFNNINEVQHFRDAELKV--ADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + + + L+P V EV+L K++++ +
Sbjct: 120 KEILAPGANDVWVVDREQKTDLLLPVIDDVVKEVDLAGGKVIVELLEGL 168
>gi|332711278|ref|ZP_08431210.1| 16S rRNA processing protein RimM [Lyngbya majuscula 3L]
gi|332349827|gb|EGJ29435.1| 16S rRNA processing protein RimM [Lyngbya majuscula 3L]
Length = 208
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 75/205 (36%), Gaps = 42/205 (20%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRK 56
+ + + I + HGL GE+ + ++ P R++ DN + +
Sbjct: 4 EDWLEIGRIVSPHGLKGELRVYPSSDFPERFEEPGQRWLKPPGDNPPQPVELLWGRFVPG 63
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
++ G+DN A LR +L D ELEEDE+ DL ++E F++ G+
Sbjct: 64 KALYVVQLKGVDNRDQAEALRGYQLLVPTSDRP--ELEEDEYHILDLIDLEVFNQLTGEA 121
Query: 116 WGQVCGVYNFGAGSILEI------------------------------KNTMEKTFLIPF 145
G V V G +L++ K T LIPF
Sbjct: 122 VGVVVDVIPAG-NDLLKVKLLSSVQPPPTQPETPPPTRTSKKRQAKGKKEPQPATVLIPF 180
Query: 146 TKFAVLEVNLQENKILIDPIAAGLN 170
K V+L+ +I I P L
Sbjct: 181 VKAIAPVVDLENGRIEITPPPGLLE 205
>gi|220934026|ref|YP_002512925.1| 16S rRNA processing protein RimM [Thioalkalivibrio sp. HL-EbGR7]
gi|219995336|gb|ACL71938.1| 16S rRNA processing protein RimM [Thioalkalivibrio sp. HL-EbGR7]
Length = 167
Score = 158 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 4 LDKL-VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL----YSNDNRELRILKMYRKNK 58
+++ +++ + +G+ G V + S ++ RY + RE R++ K
Sbjct: 1 MERRSIVLGRVTGLYGVQGWVKVFSETRPREEIVRYNPVLLGHEGQWRETRVVGGKAHGK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F G D+ +A+ L ++ R+ L + E++ DL +E G+ G
Sbjct: 61 GVVMKFQGCDDRDAAAALMGQEIAVWREQLAR--LPKGEYYWADLVGLEVVTTGGESLGV 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
V ++ GA ++ +K ++ LIP+ + V +V+L+ + +D
Sbjct: 119 VDSLFETGANDVIVVK--GDRERLIPYVRGEFVRDVDLEAGTLTVD 162
>gi|17230304|ref|NP_486852.1| 16S rRNA-processing protein RimM [Nostoc sp. PCC 7120]
gi|21362862|sp|Q8YTB1|RIMM_ANASP RecName: Full=Probable 16S rRNA-processing protein rimM
gi|17131905|dbj|BAB74511.1| alr2812 [Nostoc sp. PCC 7120]
Length = 246
Score = 158 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 19/185 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMY--- 54
D+ + + I + GL+GEV + ++ P R++L I ++
Sbjct: 60 PNPDEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRY 119
Query: 55 -RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
++ +G++N + ELR L+ D EL EDE+ DL ME F +
Sbjct: 120 LENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRP--ELGEDEYHVVDLIGMEVFLQAS 177
Query: 113 GKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G G V V G +LE+ + KT LIPF K V+LQ +I I P
Sbjct: 178 GDLVGAVVDVIPAG-NDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPP 236
Query: 166 AAGLN 170
L
Sbjct: 237 PGLLE 241
>gi|119717481|ref|YP_924446.1| 16S rRNA processing protein RimM [Nocardioides sp. JS614]
gi|171704654|sp|A1SLS4|RIMM_NOCSJ RecName: Full=Ribosome maturation factor rimM
gi|119538142|gb|ABL82759.1| 16S rRNA processing protein RimM [Nocardioides sp. JS614]
Length = 184
Score = 158 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 73/186 (39%), Gaps = 12/186 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDN--------RELRIL 51
M ++ VL+ IG HG+ GE+ +D + P + + R + +
Sbjct: 1 METIE--VLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVR 58
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ F + + +A R + L+A + + E+++ L + +D
Sbjct: 59 SARWHQSTLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPD-EYYDHQLVGLAAYDV 117
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G G V G+ + GA +L ++ + L+PF K V EV+L +++I +
Sbjct: 118 SGAALGSVTGLVHGGAQDLLTVRTPDGRDALVPFVKALVPEVDLAGRRVVIADRPGLVTP 177
Query: 172 TTMKNP 177
+
Sbjct: 178 LPEDDE 183
>gi|269955969|ref|YP_003325758.1| 16S rRNA processing protein RimM [Xylanimonas cellulosilytica DSM
15894]
gi|269304650|gb|ACZ30200.1| 16S rRNA processing protein RimM [Xylanimonas cellulosilytica DSM
15894]
Length = 181
Score = 158 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 8/172 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++A I H L GEV +D ++P + L +L R++
Sbjct: 3 LVVARISKAHSLRGEVALDLRTDDPESRLPVGAVLATDPPEAGPLTVLSRRLHQGRWLVK 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ + + +A LR ++L + D EED ++ +L+ + G G+V +
Sbjct: 63 FAEVADRTAAEALRGVELVVE----ADASDEEDAWYPHELQGLRVELLDGTVVGEVVTLE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ A L I+ T LIPF V V++ ++++DP L +
Sbjct: 119 HLPAHDALLIEETGGARTLIPFVTAIVPVVDVAGGRVVLDPPGGLLASDAAN 170
>gi|170750014|ref|YP_001756274.1| 16S rRNA processing protein RimM [Methylobacterium radiotolerans
JCM 2831]
gi|209573582|sp|B1LVU1|RIMM_METRJ RecName: Full=Ribosome maturation factor rimM
gi|170656536|gb|ACB25591.1| 16S rRNA processing protein RimM [Methylobacterium radiotolerans
JCM 2831]
Length = 231
Score = 158 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 13/188 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNK----RF 60
LVL+ G HGL GEV + SY +P + Y L ++D R L + +
Sbjct: 51 NLVLLGEFGRAHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDML 110
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
IA G+ +A L + L+ R E ++DE + DL D G G +
Sbjct: 111 IARVKGVSGRSAAEALNRVALFVPRDRLAAPE-DDDEVYAADLIGAAAVDEAGTLVGTIV 169
Query: 121 GVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V N+G G +LE++ T L+PFTK V +++ + ++ +
Sbjct: 170 AVPNYGGGDLLELRPPNGGATALLPFTKAFVPVLDVAQRRVTVAAPEDLF------AAPG 223
Query: 180 DCPLDSAG 187
+ P D G
Sbjct: 224 EKPADDPG 231
>gi|330717907|ref|ZP_08312507.1| 16S rRNA-processing protein RimM [Leuconostoc fallax KCTC 3537]
Length = 169
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 67/170 (39%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ + TI THG+ GEV + + + + ++ ++++ + I +
Sbjct: 2 EYYKVGTIVNTHGIRGEVKVAAITDFAEQRFQKGNTLFIQFNDEKIPVVIQSTRVHKGMY 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ TF +NI+ + + L + + L E +++ + + + G V
Sbjct: 62 LLTFEAFNNINEVEKYKQSDLLVSAEQ--RDTLTEGQYYYDQIIGSQVINMAHDEIGTVK 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + + +K L+P + V+++ I ID + L+
Sbjct: 120 EIMVTGANDVWVVARDNKKDALLPVIDDVIKAVDIENQIITIDEMEGLLD 169
>gi|261380055|ref|ZP_05984628.1| 16S rRNA processing protein RimM [Neisseria subflava NJ9703]
gi|284797269|gb|EFC52616.1| 16S rRNA processing protein RimM [Neisseria subflava NJ9703]
Length = 169
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 12/175 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNRELRIL--KMYR 55
M V M I G+ G + I + Y ++ +D + L D + L ++
Sbjct: 1 MTDTQTRVAMGYIKGVFGIKGWLKIAANTEYTDSLLDYPEWQLC-KDGKTLNVVLEAGKI 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N F GID+ A LR + R+ F E EDE++ DL M +++
Sbjct: 60 VNGELQVKFEGIDDRDQAFALRGYTIEIPRESFAPTE--EDEYYWADLVGMTVINKENIV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L IK + LIPF + V+ I+ D GL+
Sbjct: 118 LGKVSNLMETGANDVLMIKGKHGQ-ILIPFVSNYIESVDTDSKTIIAD---WGLD 168
>gi|227503361|ref|ZP_03933410.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
gi|227075864|gb|EEI13827.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
Length = 165
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNR---ELRILKMYRKNKRFIA 62
+++ + +HG+ GEV ++ + P L R EL I + R +
Sbjct: 3 LMIGRVIKSHGIKGEVVVEPTTDEPEVRFAVGEKLQGRQGRKEHELTISAVRSHKGRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T I + A LR + +A E +++ F++ +LE + R G+ G V V
Sbjct: 63 TCKEIADRTQADSLRGTQFFA-----APLEDDDEGFYDHELEGLRVI-RDGEDIGAVVSV 116
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + +LE++ + + L+PF V EV+++ I+P L+
Sbjct: 117 VHGPSQDLLEVELSTGSSALVPFVHAIVPEVDVEAGTCTIEPPEGLLD 164
>gi|120610565|ref|YP_970243.1| 16S rRNA-processing protein RimM [Acidovorax citrulli AAC00-1]
gi|209573540|sp|A1TND1|RIMM_ACIAC RecName: Full=Ribosome maturation factor rimM
gi|120589029|gb|ABM32469.1| 16S rRNA processing protein RimM [Acidovorax citrulli AAC00-1]
Length = 191
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRILKM 53
V + I G+ G + Y+ +P L R+ L ++ L I +
Sbjct: 15 DAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQA 74
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A G+D+ +A LR +++ R F EDE++ DL +E +R+G
Sbjct: 75 REHSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTA--AEDEYYWVDLIGLEVVNREG 132
Query: 114 KYWGQVCGVYNFGAGSILEI----KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G + L + + E +IPF V V++ +I++D
Sbjct: 133 VALGSVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDRVDIAGRRIVVD 186
>gi|218283555|ref|ZP_03489545.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
gi|218215823|gb|EEC89361.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
Length = 162
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIATF 64
++ +A I THGL GE + ++P VL+ D R L +++ + F
Sbjct: 1 MIKVAQIINTHGLKGECKLYLVTDDPQHRFEKGRVLHLEDGRTLTVVRYREQKGFGYCYF 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID+I A +L+ L+ + D ELEE +++ +L ++ + + G+V +
Sbjct: 61 EGIDSIEKAEQLKTKNLFIAQDDLP--ELEEGQYYYHELMNCTVYNEKKENLGEVVDILE 118
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
GA +L +K+ +FL+PF +++VN ++I+I +
Sbjct: 119 TGANLVLRVKSKN-TSFLLPFVPAFIVDVNKDTHEIIIREMDGL 161
>gi|170693744|ref|ZP_02884902.1| 16S rRNA processing protein RimM [Burkholderia graminis C4D1M]
gi|170141526|gb|EDT09696.1| 16S rRNA processing protein RimM [Burkholderia graminis C4D1M]
Length = 248
Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + + +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 73 DAVEVGAVVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLMKGRERQSAPSLQAKTHSD 132
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + +A LR ++Y R +F LE DEF+ DL ++ + G G+
Sbjct: 133 SVVALLGGVADRDAALALRGSRVYVSRSEFPA--LEADEFYWVDLLGLDVVNLAGVNLGK 190
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I+ LIPF V V+ +I++D
Sbjct: 191 VADMIDNGAHSVLRIEYAAADKTGKPGTAERLIPFVGVFVKTVDQAAKQIIVD 243
>gi|325914813|ref|ZP_08177148.1| 16S rRNA processing protein RimM [Xanthomonas vesicatoria ATCC
35937]
gi|325538904|gb|EGD10565.1| 16S rRNA processing protein RimM [Xanthomonas vesicatoria ATCC
35937]
Length = 170
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRI--LKMYR 55
M ++ +L+ I G+ GE+ ++S+ + RY + S +E + ++
Sbjct: 1 MKPTERRILLGRIVGAFGVKGELKLESWTEPRSAIFRYQPWIVRSPSGQETVVSGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F + + + + ++Y R DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPDVTDRDTVEAMHGTEIYVARSALPPP--NPDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPEFVKSVDFEANLIVVD 165
>gi|154686018|ref|YP_001421179.1| 16S rRNA-processing protein RimM [Bacillus amyloliquefaciens FZB42]
gi|166226424|sp|A7Z4M2|RIMM_BACA2 RecName: Full=Ribosome maturation factor rimM
gi|154351869|gb|ABS73948.1| RimM [Bacillus amyloliquefaciens FZB42]
Length = 174
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNK 58
++ + I THG+ GEV + S + + + Y+ +++ + +R +K
Sbjct: 3 NRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFAEGAAEPIKVTVSAHRLHK 62
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F + F + +++ LR++ + +D + E +E F+ ++ E G+ G
Sbjct: 63 QFHLLQFKEMPSLNEVEHLRNMVIKVPEEDLGELEEDE--FYFHEIIGCEVVSEDGELIG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + GA + + +K LIP+ V ++N+ E KI I + ++
Sbjct: 121 TVKEILTPGANDVWVVARKGKKDALIPYIASVVKDININEKKIKIHVMEGLIDE 174
>gi|153954029|ref|YP_001394794.1| 16S rRNA-processing protein RimM [Clostridium kluyveri DSM 555]
gi|229485583|sp|A5N815|RIMM_CLOK5 RecName: Full=Ribosome maturation factor rimM
gi|146346910|gb|EDK33446.1| Hypothetical protein CKL_1404 [Clostridium kluyveri DSM 555]
Length = 162
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + I THGL GE+ + ++ + I ++K+ I
Sbjct: 1 MKDFITVGQIINTHGLKGELKVYPLTDDINRFKELKSVYVEGILKNITGCKLQSKKVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+I A E + L R++ +LEE +F D+ D +G ++G++ V
Sbjct: 61 IEGIDSIEKALEYKGKYLEVSREN--AVKLEEGRYFIVDIVGCRVIDEEGVFYGKISEVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + IK + LIP + VL+V++++ +I+I P+ +
Sbjct: 119 HTHRNDVYWIK--GDNELLIPAIENVVLKVDVEKQEIIIKPVETWM 162
>gi|312898906|ref|ZP_07758294.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
gi|310620068|gb|EFQ03640.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
Length = 166
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 3/167 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M + + + I HG+ G+V + + P D + I +
Sbjct: 1 MAETE-FFTIGQIVAPHGVRGDVRVYPDTDFPERFLTMKYAYIDGVKYEITDARFHKRVV 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F GI + + L +L RQD LEE + + D+ FD++ G V
Sbjct: 60 LMKFVGIHDRNGVEPLLHKELQVTRQDL--MPLEEGQHYVFDIIGCRVFDKENNVLGTVT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + + + K L+ +L V+ I+ DP
Sbjct: 118 DILKTGSNDVYIVTDEDGKELLLAVIPQVILSVDTDTKTIIADPPEW 164
>gi|192360672|ref|YP_001981923.1| 16S rRNA-processing protein RimM [Cellvibrio japonicus Ueda107]
gi|209573579|sp|B3PDH6|RIMM_CELJU RecName: Full=Ribosome maturation factor rimM
gi|190686837|gb|ACE84515.1| 16S rRNA processing protein RimM [Cellvibrio japonicus Ueda107]
Length = 178
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDN-RELRILKMYRKN 57
K LV + I +G+ G V + SY +N + + + + + +++ I +
Sbjct: 3 AKSSNLVSVGRITAVYGIKGWVKVHSYTEPQDNLFEYHPWWVKTRHGVKQVEIDEARPHG 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--KY 115
++A G+D+ A + +R ELE+ E++ LE + F G +
Sbjct: 63 DAYVAHIKGVDDRDLAMAYTAADIAVERDLLP--ELEDGEYYWNQLEGLSVFTVFGGEQR 120
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTK-FAVLEVNLQENKILID 163
G V + GA +L ++ ++ LIP+ VL V+L +IL+D
Sbjct: 121 LGVVTKLLETGANDVLVVQGDAQSIDQRERLIPYVPGQFVLSVDLDSKRILVD 173
>gi|295677252|ref|YP_003605776.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1002]
gi|295437095|gb|ADG16265.1| 16S rRNA processing protein RimM [Burkholderia sp. CCGE1002]
Length = 244
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 69 DAVEVGAIVDAYGLKGWVKVAAHADAGQGGDALLSAKRWWLLKGPERKSAPSLQAKTHSD 128
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + A LR ++Y R +F LE DEF+ DL ++ + G G+
Sbjct: 129 SVVARLGGVADRDVALGLRGSRVYISRSEFPA--LEADEFYWVDLIGLDVVNLAGLNLGK 186
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I+ + LIPF V V+ +I++D
Sbjct: 187 VASMVDNGAQSVLRIEYPATDKNGKPVAGERLIPFVGVFVKTVDQAAKQIVVD 239
>gi|306836396|ref|ZP_07469374.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
gi|304567756|gb|EFM43343.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
Length = 165
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNR---ELRILKMYRKNKRFIA 62
+++ + +HG+ GEV ++ + P L R EL I + R +
Sbjct: 3 LMIGRVIKSHGIKGEVVVEPTTDEPEVRFAVGEKLQGRQGRKEHELTISAVRSHKGRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
T I + A LR + +A E +++ F++ +LE + R G+ G V V
Sbjct: 63 TCKEIADRTQADSLRGTQFFA-----APLEDDDEGFYDHELEGLRVI-RDGEDIGAVVSV 116
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + +LE++ + L+PF V EV+++ I P L+
Sbjct: 117 VHGPSQDLLEVELASGSSALVPFVHAIVPEVDVEAGTCTIQPPEGLLD 164
>gi|289662768|ref|ZP_06484349.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289670358|ref|ZP_06491433.1| 16S rRNA-processing protein RimM [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 170
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 77/169 (45%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + ++ +L+ + G+ GE+ ++S+ + RY + S + ++
Sbjct: 1 MKQTERRILLGRVVGAFGVKGELKLESWTEPRNAIFRYQPWIVRAPSGQESVISGVRGRD 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K IA F + + + + ++Y R + DE++ DLEE++ +G
Sbjct: 61 QGKNLIAVFPDVTDRDTVEAMHGTEIYVARSALPPPK--PDEYYWVDLEELQVETVEGVK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G V +++ G+ ++ ++ ++ +IPF V V+ + N I++D
Sbjct: 119 LGTVSHLFSTGSNDVVVVR--GDRERMIPFVFPDFVKSVDFEANLIVVD 165
>gi|17545653|ref|NP_519055.1| 16S rRNA-processing protein [Ralstonia solanacearum GMI1000]
gi|21362859|sp|Q8Y0V9|RIMM_RALSO RecName: Full=Ribosome maturation factor rimM
gi|17427946|emb|CAD14636.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
GMI1000]
Length = 184
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVL--------YSNDNRELRILKM 53
D LV + +G +G+ G + + + + L + + L S+D R L +
Sbjct: 12 PDDLVEVGYVGGAYGVRGWIKVQPHGDAEALLHASTWWLKPAAGAPAVSSDWRVLPVGTS 71
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + + A LR ++ +R +F +DEF+ DL + Q
Sbjct: 72 REHSGSVVAGSPAVPDRNVAEALRGCTVWVRRAEFPAP--ADDEFYWVDLIGSTVVNEQQ 129
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I + L+PF + V V++ I++D GL+
Sbjct: 130 ETLGTVAGLIDNGAHQILRIVDEGGTERLVPFVEVYVKSVDVAGKHIVVD---WGLD 183
>gi|284032645|ref|YP_003382576.1| 16S rRNA processing protein RimM [Kribbella flavida DSM 17836]
gi|283811938|gb|ADB33777.1| 16S rRNA processing protein RimM [Kribbella flavida DSM 17836]
Length = 182
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 5/178 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI----DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
LV + IG HG+ GEV +D + P D V + R L + + R +
Sbjct: 2 LVTVGRIGRAHGIKGEVGLDVRTDEPDRRFADGATLVTDTKPPRTLTVESSRWHSGRLLV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + +A +LR+L L A+ + + E E E+++ +L + G+ G+V V
Sbjct: 62 KFVESPDRTAAEQLRNLVLQAEIAEDERPEDPE-EYYDRELIGLSVRTTDGEQAGEVIDV 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
+ + +LEI+ L+P + V +++L E +L+ L+ + +
Sbjct: 121 VHLPSQDLLEIRRPAGNAVLVPLVEQLVPKIDLDEKYVLVADRPGLLDPEGAEVTPTE 178
>gi|148238537|ref|YP_001223924.1| 16S rRNA-processing protein [Synechococcus sp. WH 7803]
gi|166226485|sp|A5GI62|RIMM_SYNPW RecName: Full=Ribosome maturation factor rimM
gi|147847076|emb|CAK22627.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
WH 7803]
Length = 175
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 11/174 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKR 59
D + + + GL GE+ ++ ++ P RE+ + + +
Sbjct: 4 DDWLPVGKVVAVQGLKGELRVNPASDFPERFTEPGSRWLKARGQAPREIELTSGRQLPGK 63
Query: 60 --FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYW 116
F+ F+G+++ +A L L D EL E EF DL +E G
Sbjct: 64 SVFVVRFAGVESRDAAEALVGQTLMVPADDRP--ELAEGEFHLLDLVGLEARLSADGDAI 121
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +L ++ +T +IPF + V +V+L++ + + P L
Sbjct: 122 GTVKDLIS-GGNDLLVLERPDGRTLMIPFVEAIVPDVHLEQGWLRLTPPPGLLE 174
>gi|303257145|ref|ZP_07343159.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
gi|302860636|gb|EFL83713.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
Length = 174
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ +++ + +GL G V + + + + + VL + R + + K +
Sbjct: 10 EPIVLGALHGAYGLKGWVRVQPFQGTSALLGSKHWQHVLPDGEVRPVELEKAKLHGAGIV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F GID A+ LR + R+DF E EE+E++ DL E +++G+ GQV G
Sbjct: 70 AKFQGIDTPEDAAALRGA-VALYRKDFP--EAEENEYYWVDLIGCEVVNKEGQSIGQVKG 126
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G IL +K K LIPF + + EVN++ KI++D
Sbjct: 127 MIDNGVHDILNVKRADGKEVLIPFVEDYLAEVNVEAKKIVVD 168
>gi|118617623|ref|YP_905955.1| 16S rRNA-processing protein RimM [Mycobacterium ulcerans Agy99]
gi|166226457|sp|A0PQ65|RIMM_MYCUA RecName: Full=Ribosome maturation factor rimM
gi|118569733|gb|ABL04484.1| 16S rRNA processing protein RimM [Mycobacterium ulcerans Agy99]
Length = 174
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSNDNRELRILKMYRKNKR 59
+++ + HG+ GEV ++ + P + R I + R
Sbjct: 3 LVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGAR 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +G+++ +A LR D E E D +++ LE + G+ G V
Sbjct: 63 LLVRLAGVNDRDTADGLRGSLFVIDSADLPPIE-EPDTYYDHQLEGLRVRTTAGQDVGVV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + GAG +L +K L+PF V V+L + + IDP L+
Sbjct: 122 AEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
>gi|148652017|ref|YP_001279110.1| 16S rRNA processing protein RimM [Psychrobacter sp. PRwf-1]
gi|172048453|sp|A5WBW9|RIMM_PSYWF RecName: Full=Ribosome maturation factor rimM
gi|148571101|gb|ABQ93160.1| 16S rRNA processing protein RimM [Psychrobacter sp. PRwf-1]
Length = 176
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 1 MVKL--DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMY 54
M K D L+ + + +G+ G +++ S + Y + + + L + +
Sbjct: 1 MTKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
R+ +A F + + + A + + ++ + E EDE++ +DL + ++Q +
Sbjct: 61 RQGTGIVAQFEQVPDRNVAETMNGVSIWIDKDSLPSTE--EDEYYWSDLVGLSVINKQDE 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G V ++ GA I+++ + ++ +IP+ K V V+L ++++D
Sbjct: 119 CLGTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVVDLAAGRMVVD 171
>gi|240170572|ref|ZP_04749231.1| 16S rRNA-processing protein [Mycobacterium kansasii ATCC 12478]
Length = 177
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--------SNDNRELRILKMYRKNKR 59
+++ + HG+ GE+ ++ ++P + R I + R
Sbjct: 3 LVVGRVVKAHGIGGELVVEIRTDDPDNRFAPGTLLRAKSSRDPGHERSYVIDSVRDHGAR 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+ + +A LR D E E D +++ LE + G+ G V
Sbjct: 63 LLVRLVGVTDRDAADALRGSVFVIDSDDLPPIE-EADTYYDHQLEGLRVRTATGQDVGVV 121
Query: 120 CGVYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ L+PF + V V+L++ + IDP L+
Sbjct: 122 AEVLHTAAGELLAVRPADGSQEGEVLVPFVRAIVTSVSLEDGVLQIDPPDGLLD 175
>gi|38234108|ref|NP_939875.1| 16S rRNA-processing protein [Corynebacterium diphtheriae NCTC
13129]
gi|59798748|sp|Q6NGI4|RIMM_CORDI RecName: Full=Ribosome maturation factor rimM
gi|38200370|emb|CAE50057.1| Putative 16s rRNA processing protein [Corynebacterium diphtheriae]
Length = 166
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLY----SNDNRELRILKMYRKNKRFIA 62
+++ + +HG+ GEV I+ P + + L I + R +
Sbjct: 3 LMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + +A LR + +A ++ +D F++ +LE + + + G+V GV
Sbjct: 63 KFKEIADRTAADSLRGTRFFA----APLDDDVDDGFYDHELEGLAVIHGE-EKIGEVSGV 117
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A S+LE+ K LIPF V EV+L +I P L
Sbjct: 118 IHGPAQSLLEVTLESGKEVLIPFVHDIVPEVDLDAGTCVITPPEGLLE 165
>gi|284047849|ref|YP_003398188.1| 16S rRNA processing protein RimM [Acidaminococcus fermentans DSM
20731]
gi|283952070|gb|ADB46873.1| 16S rRNA processing protein RimM [Acidaminococcus fermentans DSM
20731]
Length = 164
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-NDNRELRILKMYRKNKRFIA 62
+++ +++ I HG+ GE I ++P + + ++ RE ++ + + ++
Sbjct: 1 MEQHIVIGKIVAPHGVRGEFRIMPQTDHPERYAKMKKITLDNGREYTVVSLRQHKNVYLM 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
GID+++ A LR + + ++ L E +F+ D+ +G+ G + V
Sbjct: 61 KVEGIDSMNDAETLRGRTIVLRPEELP--PLPEGQFYVRDIIGFAAVTPEGETVGTLKDV 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ G+ + I + L+ + ++ ++ +I +
Sbjct: 119 LSPGSTDVFVIAPPQGEDILVAAIGDNIRNIDWEKKQITVVLPEWI 164
>gi|165933056|ref|YP_001649845.1| 16S rRNA-processing protein RimM [Rickettsia rickettsii str. Iowa]
gi|189040849|sp|B0BX63|RIMM_RICRO RecName: Full=Ribosome maturation factor rimM
gi|165908143|gb|ABY72439.1| 16S rRNA processing protein [Rickettsia rickettsii str. Iowa]
Length = 165
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIYIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFSDQTTELLPFNKEFFPII 152
>gi|241895647|ref|ZP_04782943.1| 16S rRNA processing protein RimM [Weissella paramesenteroides ATCC
33313]
gi|241871225|gb|EER74976.1| 16S rRNA processing protein RimM [Weissella paramesenteroides ATCC
33313]
Length = 191
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFI 61
L + I THG+ GEV I + P + + + N ++I + + +
Sbjct: 26 LYKVGKIVNTHGIRGEVRIVPTTDFPAERFKKNKNLIIQTPEGNLTVQIATSRQHKQFML 85
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
+F G+ NI+ + +D +++ D + L +DEF+ ++ ++ D + G+V
Sbjct: 86 VSFVGMGNINDVEQYKDCEVFV--ADELQQALPDDEFYYHEIIGLDVIDNATNEIIGKVS 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ A + + ++ L+PF + V ++L ++ +
Sbjct: 144 EIMPMPANDVWVVHAKGKEDLLLPFIEDVVTAIDLDTGTAKVNLLEEI 191
>gi|227892626|ref|ZP_04010431.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
gi|227865558|gb|EEJ72979.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
Length = 171
Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFIATFS 65
+A + TTHGLNGEV + + P D L +N L + K + ++ F
Sbjct: 6 VARVLTTHGLNGEVKVSVITDFPEDRFAVGMHLALKNNTEDVLTVKKGRPFKQFWLVQFE 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGVYN 124
I +I +A +LR L D EL E ++ D+ + + D G G++ + +
Sbjct: 66 EIKDIDAAEKLRGQVLVVSEDD--RGELPEGAYYYKDIFDCDVIDNESGARLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDVWLVHEDSGKEYWIPNIADVVKKVDVANKKVYVELMEGLRDED 171
>gi|121604368|ref|YP_981697.1| 16S rRNA-processing protein RimM [Polaromonas naphthalenivorans
CJ2]
gi|209573587|sp|A1VM98|RIMM_POLNA RecName: Full=Ribosome maturation factor rimM
gi|120593337|gb|ABM36776.1| 16S rRNA processing protein RimM [Polaromonas naphthalenivorans
CJ2]
Length = 202
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR------------EL 48
D + + I G+ G V I ++ +P L + L + D + L
Sbjct: 17 PDDALEVGRILDAWGVKGWVKILPHSTDPEALFSAKTWYLQTPDVKFRPGFSLFSGTVSL 76
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
++ + + +A FSG+D+ +A LR +++ R F DE++ DL +
Sbjct: 77 KVDEAKIHSGAVVAKFSGLDDRDAAEALRGARIFLSRSSFPAAS--ADEYYWVDLIGLNV 134
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKI 160
+R+G G V + G S+L ++ + +IPF V +V++ I
Sbjct: 135 LNREGVALGCVRDLMATGPHSVLCVEYASTQEDGTSATAERMIPFVAAYVDKVDIAGKCI 194
Query: 161 LID 163
+D
Sbjct: 195 TVD 197
>gi|303248433|ref|ZP_07334692.1| 16S rRNA processing protein RimM [Desulfovibrio fructosovorans JJ]
gi|302490144|gb|EFL50063.1| 16S rRNA processing protein RimM [Desulfovibrio fructosovorans JJ]
Length = 183
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 13/178 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-------SNDNRELRILKMYRK 56
+K +++ + HG+ GE+ IDS+A++P +R R +
Sbjct: 3 PEKYIIVGDVARPHGIRGELCIDSHADSPSYFDRGAEVLLCPPGSPGRGRVYTVRAARVH 62
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY- 115
+R + +F G+ + ++A LR L + + DE F L + Q
Sbjct: 63 KERLLVSFEGVPDRNAAELLRGLAVCVPASRLVPP--DPDEVFLHQLLGLRVRLAQAAPG 120
Query: 116 ---WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+G + V + G + I++ L P V +++L+ ++IDP L
Sbjct: 121 SPDFGVIEDVRDSGGAELWVIRDAAGHEILFPAADELVPDIDLEAGFVVIDPPPGLLE 178
>gi|91787573|ref|YP_548525.1| 16S rRNA-processing protein RimM [Polaromonas sp. JS666]
gi|91696798|gb|ABE43627.1| 16S rRNA processing protein RimM [Polaromonas sp. JS666]
Length = 213
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR------------EL 48
D + + I G+ G V I ++ +P L + L + + + L
Sbjct: 28 PDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSAKSWFLQAPEAKFRPGFNAFSGTVLL 87
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+ + + +A FSG D+ ++A LR +++ R F +DE++ DL +
Sbjct: 88 SVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFPVAS--KDEYYWVDLIGLNV 145
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKI 160
+R+G GQV + G S+L ++ T ++ +IPF + V++ I
Sbjct: 146 VNREGVPLGQVRDLMTTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCI 205
Query: 161 LID 163
+D
Sbjct: 206 TVD 208
>gi|317133000|ref|YP_004092314.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
gi|315470979|gb|ADU27583.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
Length = 173
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 7/171 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+ + I T GL GEV + + ++P + + L ++ +
Sbjct: 5 RFLETGKIVATQGLRGEVRVQPWCDSPDFLLQFGGFFLDGEGKNYRKVTDARVHKHMAVL 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCG 121
F G + + A L LY R K +L E F DL M+ D G +G++
Sbjct: 65 KFEGAETVEDAMALLRRVLYIDR---KTVDLPEGSHFEQDLIGMDVVDAGDGHAYGKLTE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V GA + + + K LIP V EV+ + I P+ ++
Sbjct: 122 VLRTGANDVYTVTDAAGKEVLIPAIPDVVREVDTDAGVMHITPLKGLFDDA 172
>gi|209573736|sp|Q12CW5|RIMM_POLSJ RecName: Full=Ribosome maturation factor rimM
Length = 202
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR------------EL 48
D + + I G+ G V I ++ +P L + L + + + L
Sbjct: 17 PDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSAKSWFLQAPEAKFRPGFNAFSGTVLL 76
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+ + + +A FSG D+ ++A LR +++ R F +DE++ DL +
Sbjct: 77 SVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFPVAS--KDEYYWVDLIGLNV 134
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKI 160
+R+G GQV + G S+L ++ T ++ +IPF + V++ I
Sbjct: 135 VNREGVPLGQVRDLMTTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCI 194
Query: 161 LID 163
+D
Sbjct: 195 TVD 197
>gi|33152926|ref|NP_874279.1| 16S rRNA-processing protein [Haemophilus ducreyi 35000HP]
gi|38372435|sp|Q7VKG1|RIMM_HAEDU RecName: Full=Ribosome maturation factor rimM
gi|33149151|gb|AAP96668.1| 16S rRNA processing protein RimM [Haemophilus ducreyi 35000HP]
Length = 175
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATF 64
++ +G+T+G+ G + + S + Y + + + + + I
Sbjct: 8 VVGKLGSTYGIRGWLRLYSSTEKAESIFDYQPWFLKIKGQWQLIELESWRYHSNDLIVKL 67
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G ++ +A L + ++ F +L E++++ DL + + + G V +
Sbjct: 68 KGTEDREAAQLLTNAEIGVDLSVFP--KLGEEDYYWHDLINCQVVNLENYTMGVVTELME 125
Query: 125 FGAGSILEIKNT-----MEKTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
G+ +L ++ ++ LIPF K V V+L I +D A
Sbjct: 126 TGSNDVLVVRANSKDAFGKQERLIPFLYKQVVKRVDLSTKTITVDWDAG 174
>gi|256851289|ref|ZP_05556678.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260660713|ref|ZP_05861628.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|282933267|ref|ZP_06338654.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|297206157|ref|ZP_06923552.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
gi|256616351|gb|EEU21539.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260548435|gb|EEX24410.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|281302771|gb|EFA94986.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 208-1]
gi|297149283|gb|EFH29581.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
Length = 170
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+A + T+HGL GEV + + P + +D R+L + + ++ TF
Sbjct: 6 VAQVLTSHGLKGEVKVKVITDFPEQRFCEGVKLFIKDDMRQLTVESGRPFKQFWLVTFKE 65
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNF 125
I +I+ A L L +D E+L E ++ + + D + + G+V +
Sbjct: 66 IKDINEAESLFGKTLVISEED--QEQLPEGHYYYHQIIGLSVVDNETDELIGKVTDIEAP 123
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I ++ + K F +P+ V VNL + ++ ++ + +
Sbjct: 124 GANDIWQVTPKVGKPFWLPYVPSFVKSVNLDKEEVRVELMEGLRDED 170
>gi|312139214|ref|YP_004006550.1| 16S rRNA processing protein rimm [Rhodococcus equi 103S]
gi|325673479|ref|ZP_08153170.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
gi|311888553|emb|CBH47865.1| 16S rRNA processing protein RimM [Rhodococcus equi 103S]
gi|325555500|gb|EGD25171.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
Length = 188
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 15/187 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE-------LRILKMYRKNKRF 60
+++ + +HG+ GE+ ++ + P + + + + R
Sbjct: 3 LVVGRVAKSHGIRGELVVEVRTDEPEERFAVGAELRGRKPRENKLHTYTVEAAREHSGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-----RQGKY 115
+ G+ + +A LR D + + DEF++ +LE + G
Sbjct: 63 LLRLEGVADRTAADNLRGTLFVIDTADLTPSD-DPDEFYDHELEGLTVRMAAGRPDAGTP 121
Query: 116 WGQVCGVYNFGAGSILEIKNTME--KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
G V V + AG +L I+ + L+PF V V++ + I IDP L+
Sbjct: 122 VGTVLEVLHSAAGELLSIRPEGQTSGELLVPFVTAIVPTVSVADGLIEIDPPEGLLDPDF 181
Query: 174 MKNPQYD 180
+ +
Sbjct: 182 GDSRNEE 188
>gi|309792458|ref|ZP_07686922.1| hypothetical protein OSCT_2873 [Oscillochloris trichoides DG6]
gi|308225446|gb|EFO79210.1| hypothetical protein OSCT_2873 [Oscillochloris trichoides DG6]
Length = 174
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSNDNRELRILKMYRKN-K 58
D L+L+ I G+ G+V + S+ + P L R + + K++
Sbjct: 6 SPDDLLLIGVIAGPFGVKGQVKLKSFTDRPDYLRRNLREIFVGKKLVPYTLTKLHEHKPG 65
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I T ++ + ELR +++ ++ D L DE++ DL ++ + G
Sbjct: 66 LLILTLRDLETREAVDELRGCEVFIRQSD--AAPLGTDEYYLHDLIGLQVLTEANQEIGT 123
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + G +L + + LIP + V+ ++L +++I PI L
Sbjct: 124 VREIIETGVHEVLIVSRPGQPDALIPVVREFVVNLDLAARQVVIRPIEGLL 174
>gi|332799155|ref|YP_004460654.1| Ribosome maturation factor rimM [Tepidanaerobacter sp. Re1]
gi|332696890|gb|AEE91347.1| Ribosome maturation factor rimM [Tepidanaerobacter sp. Re1]
Length = 171
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRF- 60
+ + + I ++ G+ G+V ++ +NP ++ + + ++ + + F
Sbjct: 5 QYIAVGKILSSWGVKGQVKVEPLTDNPKRFKILNEVFIDFKSQAVSYKVESVMFLRQYFP 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F GI++ A L+ + R+D L ED FF D+ + F+ Y G V
Sbjct: 65 VLKFEGINSKEEADTLKGHYININRKD--AVTLSEDRFFICDIIGLHVFNEFETYIGTVI 122
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + ++ + LIP K V +V+L+ ++I P+ L
Sbjct: 123 EVIQTGANDVYVVETKDKNEILIPAIKQVVKKVDLRNGIMIIRPLEGML 171
>gi|331000897|ref|ZP_08324534.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
gi|329569856|gb|EGG51613.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
Length = 174
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFI 61
+ +++ + +GL G V + + + + + VL + R + + K +
Sbjct: 10 EPIVLGALHGAYGLKGWVRVQPFQGTSALLGSKHWQHVLPDGEVRPVELEKAKLHGAGIV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F GID A+ LR + R+DF E EE+E++ DL + +++G+ GQV G
Sbjct: 70 AKFQGIDTPEDAAALRGA-VALYRKDFP--EAEENEYYWVDLIGCDVVNKEGQSIGQVKG 126
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G IL +K K LIPF + + EVN++ KI++D
Sbjct: 127 MIDNGVHDILNVKRADGKEVLIPFVEDYLAEVNVEAKKIVVD 168
>gi|313891424|ref|ZP_07825040.1| 16S rRNA processing protein RimM [Dialister microaerophilus UPII
345-E]
gi|313120199|gb|EFR43375.1| 16S rRNA processing protein RimM [Dialister microaerophilus UPII
345-E]
Length = 168
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K D+++++ I HG+ G++ + + P + +++ +I
Sbjct: 4 MKTDEMIVVGRIVAPHGVRGDLRVLPEIDKPEIFKNIKHIYFGEKSYKVISSRPHKNIYI 63
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + +++ + L + + + E E++ +L +ME + ++G + G +
Sbjct: 64 MKIEGVTDRNTSESMVGLSASLAKDEIPPCK--EGEYYCFELLDMEVYTQEGTFVGTLKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ GA + + ++ +P + +V+++ K+ ++
Sbjct: 122 IIETGANDVYTVIGPDKEEIYLPAIPSCIKKVDVESRKMTVELPEW 167
>gi|157828347|ref|YP_001494589.1| 16S rRNA-processing protein RimM [Rickettsia rickettsii str.
'Sheila Smith']
gi|166226475|sp|A8GRQ6|RIMM_RICRS RecName: Full=Ribosome maturation factor rimM
gi|157800828|gb|ABV76081.1| 16S rRNA-processing protein [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 165
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFSDQTTELLPFNKEFFPII 152
>gi|15892396|ref|NP_360110.1| 16S rRNA-processing protein [Rickettsia conorii str. Malish 7]
gi|20139550|sp|Q92IE7|RIMM_RICCN RecName: Full=Ribosome maturation factor rimM
gi|15619547|gb|AAL03011.1| 16S rRNA processing protein RimM [Rickettsia conorii str. Malish 7]
Length = 165
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFSNQTTELLPFNKEFFPII 152
>gi|58584390|ref|YP_197963.1| RimM protein, required for 16S rRNA processing [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|67461242|sp|Q5GTF3|RIMM_WOLTR RecName: Full=Ribosome maturation factor rimM
gi|58418706|gb|AAW70721.1| RimM protein, required for 16S rRNA processing [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 168
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIAT 63
D LV M I + HG+ G V + + P +++ Y + ++ I + IAT
Sbjct: 3 DNLVCMGIITSPHGIKGAVKVKIFTEKPENISLYGKLISGSKNYDIDSVSVIGENLVIAT 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+G+++ + A LR+ KLY +R +E+EF+ +DL ME + +G + +Y
Sbjct: 63 INGVNSRNEAEFLRNKKLYVERNKLLKLN-DENEFYQSDLVNMEIRLENDELYGYIKSIY 121
Query: 124 NFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
NFG+G ILEI + +K ++PFTK VN++E I ++
Sbjct: 122 NFGSGDILEISVISTKKNIMLPFTKEIFPYVNIKERYITLNMPE 165
>gi|294669689|ref|ZP_06734756.1| hypothetical protein NEIELOOT_01590 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308602|gb|EFE49845.1| hypothetical protein NEIELOOT_01590 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 169
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSN-DNRELRILKMYRK 56
M + V M I G+ G V + + Y+++ +D + L + D R + +
Sbjct: 1 MKPETQWVAMGYIKGAFGVKGWVKVAADTEYSDSLLDYPEWRLRKDKDVRTVAVESGKLN 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
FSGID+ +A LR + R+DF +EDE++ DL M +R+G
Sbjct: 61 GDGLQVKFSGIDDRDAAHLLRGYTVEISREDFAPA--DEDEYYWADLVGMTVTNREGNVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA IL ++ + LIPF + +VN + I+ D GL+
Sbjct: 119 GVVDNMMETGAHDILVVRGECGQK-LIPFVGRFIDDVNRESKTIIAD---WGLD 168
>gi|224116700|ref|XP_002331856.1| predicted protein [Populus trichocarpa]
gi|222875374|gb|EEF12505.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 33/204 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYR 55
+ V + I HGL GE+ + + P L + V + RE+ +++
Sbjct: 82 SEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVELVEGRG 141
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQ 112
+ R +I F GID + A L L + +++ ELEE EF++ DL M
Sbjct: 142 HHGRKSWILKFGGIDTVDRAKLLVGSTLLVR--EYERPELEEGEFYSRDLIGMRVILKET 199
Query: 113 GKYWGQVCGVYNFGAGSILEI-------------------KNTMEKTFLIPFTKFAVLEV 153
G+ G V V++ G +L++ +PF + V +V
Sbjct: 200 GECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEAIVPDV 259
Query: 154 NLQENKILIDPIAAGLNNTTMKNP 177
N+ E ++ I P L ++
Sbjct: 260 NMNEREMRITPPKGLLELNLRQDE 283
>gi|302525174|ref|ZP_07277516.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
gi|302434069|gb|EFL05885.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
Length = 171
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFI 61
V++ I HG+ GE+ +D ++P + L REL I + R +
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPQERFAIGAVVTTKLRDGSTRELTIAAAREHSGRLL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F + A LR L A + DEF++ +L + G G+V
Sbjct: 63 VRFEEVLTRDVAETLRGALLLADTDSLP-PTGDPDEFYDHELAGLRAELTDGTVVGKVVE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + AG +LE+ + ++ L+PF + V V++ ++++DP L+
Sbjct: 122 VVHSPAGELLEL-DHDGRSVLVPFVRAIVPVVDVAGGRVVLDPPEGLLDAD 171
>gi|16078665|ref|NP_389484.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309477|ref|ZP_03591324.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221313802|ref|ZP_03595607.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318726|ref|ZP_03600020.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322997|ref|ZP_03604291.1| 16S rRNA-processing protein [Bacillus subtilis subsp. subtilis str.
SMY]
gi|3914642|sp|O31740|RIMM_BACSU RecName: Full=Ribosome maturation factor rimM
gi|2633974|emb|CAB13475.1| 16S rRNA processing protein [Bacillus subtilis subsp. subtilis str.
168]
gi|291484153|dbj|BAI85228.1| 16S rRNA processing protein [Bacillus subtilis subsp. natto
BEST195]
Length = 174
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M K + + I THG+ GEV + S + + + Y+ N + + + +
Sbjct: 1 MTK--RWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGRNEPVEVTVNTH 58
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K+F + F N++ EL++ + ++ + E F+ ++ E F +G
Sbjct: 59 RLHKQFHLLQFKERQNLNEVEELKNAIIKVPEEELGELNEGE--FYFHEIIGCEVFTEEG 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ G+V + GA + I +K LIP+ + V ++++E KI I+ + ++
Sbjct: 117 ELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIELMEGLIDE 174
>gi|308173564|ref|YP_003920269.1| 16S rRNA processing protein [Bacillus amyloliquefaciens DSM 7]
gi|307606428|emb|CBI42799.1| 16S rRNA processing protein [Bacillus amyloliquefaciens DSM 7]
gi|328553503|gb|AEB23995.1| 16S rRNA-processing protein RimM [Bacillus amyloliquefaciens TA208]
Length = 174
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNK 58
++ + I THG+ GEV + S + + + Y+ +++ + +R +K
Sbjct: 3 NRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFAEGAAEPVKVTVNTHRLHK 62
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F + F + +++ LR++ + +D + E +E F+ ++ E G+ G
Sbjct: 63 QFHLLQFKEMPSLNEVEHLRNMIIKVPEEDLGELEEDE--FYFHEIIGCEVVSEDGELIG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + GA + + +K LIP+ V ++N+ E KI+I + ++
Sbjct: 121 TVKEILTPGANDVWVVARKGKKDALIPYIASVVKDININEKKIMIHVMEGLIDE 174
>gi|321315368|ref|YP_004207655.1| 16S rRNA-processing protein RimM [Bacillus subtilis BSn5]
gi|320021642|gb|ADV96628.1| 16S rRNA-processing protein RimM [Bacillus subtilis BSn5]
Length = 174
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMY 54
M K + + I THG+ GEV + S + + + Y+ N + + + +
Sbjct: 1 MTK--RWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMDGHNEPVEVTVNTH 58
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +K+F + F N++ EL++ + ++ + E F+ ++ E F +G
Sbjct: 59 RLHKQFHLLQFKERQNLNEVEELKNAIIKVPEEELGELNEGE--FYFHEIIGCEVFTEEG 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ G+V + GA + I +K LIP+ + V ++++E KI I+ + ++
Sbjct: 117 ELIGKVKEILTPGANDVWVIGRKGKKDALIPYIESVVKHIDVREKKIEIELMEGLIDE 174
>gi|304311870|ref|YP_003811468.1| 16S rRNA processing protein [gamma proteobacterium HdN1]
gi|301797603|emb|CBL45824.1| 16S rRNA processing protein [gamma proteobacterium HdN1]
Length = 177
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMY 54
M D V++ + +G+ G + + S+ ++ Y L + ++ L + K+
Sbjct: 1 MADGDDRNWVVVGRFASPYGVKGWLKLYSHTEPMQNIGEYPELWELGVSGSKPLVLEKVQ 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
K +A G D+ A +L R L E +++ + LE + ++ G
Sbjct: 61 FHGKGLVAKIKGCDDRTMAESHVGCELAIPRGQLPA--LPEGDYYWSQLEGLSVYNESGC 118
Query: 115 YWGQVCGVYNFGAGSILEIKNTME----KTFLIPFT-KFAVLEVNLQENKILID 163
+ G+V + GA ++ +K + +P+ VL+V+L+ ++L+D
Sbjct: 119 FLGKVDHLVETGANDVMVVKPAAGSVDDRERWLPYVLGHHVLQVDLENQRMLVD 172
>gi|229586614|ref|YP_002845115.1| 16S rRNA-processing protein RimM [Rickettsia africae ESF-5]
gi|228021664|gb|ACP53372.1| 16S rRNA processing protein RimM [Rickettsia africae ESF-5]
Length = 165
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFSDQTTELLPFNKEFFPII 152
>gi|304384769|ref|ZP_07367115.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
gi|304328963|gb|EFL96183.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
Length = 192
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---------SNDNRELRILKMYRK 56
+A I T GL GE+ + +Y + P + + + + + +
Sbjct: 23 NYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPF 82
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ +G+D+I+ + + + L +EL + EF+ ++ + G+
Sbjct: 83 KGMWLIQLAGLDSINEVEKFKGMMLKIAEDQL--QELADGEFYQHEIIGLTVI-EDGQTL 139
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + ++G + ++ +K L+P+ VL+V+L ++ + + + GL+
Sbjct: 140 GKVKEILSYGPNDVWVVERPGKKDLLLPYLNDVVLKVDLDKSIVEVA-VPEGLD 192
>gi|227904206|ref|ZP_04022011.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
gi|227868225|gb|EEJ75646.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
Length = 187
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGL+GEV ++ + P D + L + +R L I K + ++ F
Sbjct: 22 VARILTTHGLHGEVKVNVITDFPEDRFAEGMQLELKDDIDRVLTIKKSRPFKQFWLLQFD 81
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +LR L +D EL + ++ D+ + D + GK G++ + +
Sbjct: 82 EITDIDEAEKLRGKILVISEKD--RGELPDGVYYYKDIFDCGVIDNETGKRLGKITDIQS 139
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V ++++ + K+ ++ + +
Sbjct: 140 PGANDIWLVHEDNGKEYWIPNIADVVKKIDIADKKVYVELMEGLRDED 187
>gi|34580601|ref|ZP_00142081.1| 16S rRNA processing protein RimM [Rickettsia sibirica 246]
gi|28261986|gb|EAA25490.1| 16S rRNA processing protein RimM [Rickettsia sibirica 246]
Length = 165
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+KL+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLEKLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFSDQTTELLPFNKEFFPII 152
>gi|114328348|ref|YP_745505.1| 16S rRNA processing protein rimM [Granulibacter bethesdensis
CGDNIH1]
gi|122326694|sp|Q0BRH0|RIMM_GRABC RecName: Full=Ribosome maturation factor rimM
gi|114316522|gb|ABI62582.1| 16S rRNA processing protein rimM [Granulibacter bethesdensis
CGDNIH1]
Length = 186
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 8/188 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
L+L+ IG HG+ G V++ SY +P DL Y L ++ +I+ +R + T
Sbjct: 4 DLILLGVIGRPHGVRGLVHVVSYTADPDDLTAYGLLHDEAGR-QIMLDWRADGLAGITID 62
Query: 66 GID--NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGV 122
G+ + +A L + +L+ R E +ED+F+ DL +E GQV V
Sbjct: 63 GVPVQDRSAAERLTNTRLFINRDALPPVE-DEDDFYLVDLIGLEARLVADETLLGQVAQV 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCP 182
+++GAG+ LEI + + L+PFT+ AV V++ ++LIDP + + +
Sbjct: 122 HDYGAGASLEITRSGGASLLVPFTRAAVPVVDIAAGRVLIDPPQ---EENAPEFGRNELG 178
Query: 183 LDSAGKKS 190
D G+ +
Sbjct: 179 HDDGGEAA 186
>gi|329902140|ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
gi|327548863|gb|EGF33491.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
Length = 187
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
LV + + +GLNG V I ++ + ++ + L ++ +++ + +
Sbjct: 18 DLVQVGYVSGAYGLNGWVRIKPFSSTGDALLNARTWWLDKPALHDVDVMQAKMHSGDVVV 77
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ +A L+ + R F L + EF+ DL + + QG+ G V +
Sbjct: 78 QLAGVAGRDAAEALKGTSVQIPRSRFPA--LPDGEFYWVDLIGLAVENLQGESIGVVHDM 135
Query: 123 YNFGAGSILEIKNT------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA IL ++ LIPF V V+ Q KI +D GL+
Sbjct: 136 MDNGAHPILRVEAAIIPGADKADEILIPFVGQFVRTVDQQAKKITVD---WGLD 186
>gi|183981814|ref|YP_001850105.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
gi|238689244|sp|B2HJL4|RIMM_MYCMM RecName: Full=Ribosome maturation factor rimM
gi|183175140|gb|ACC40250.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
Length = 174
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSNDNRELRILKMYRKNKR 59
+++ + HG+ GEV ++ + P + R I + R
Sbjct: 3 LVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGAR 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +G+++ +A LR D + E D +++ LE + G+ G V
Sbjct: 63 LLVRLAGVNDRDTADGLRGSLFVIDSADLPPID-EPDTYYDHQLEGLRVRTTAGQDVGVV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + GAG +L +K L+PF V V+L + + IDP L+
Sbjct: 122 AEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
>gi|309809535|ref|ZP_07703393.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|312874410|ref|ZP_07734440.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
gi|312874549|ref|ZP_07734574.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|308170207|gb|EFO72242.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|311089940|gb|EFQ48359.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|311090022|gb|EFQ48436.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
Length = 173
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P N Y+ + ++ + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WG 117
++ F I++I A+ + + LY +D +L + ++ L ++ FD + K G
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKTKIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EI K F IP V +V+L KI + + +
Sbjct: 119 ILTDIEMPGANDIWEITPNKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN 173
>gi|52859961|ref|ZP_00208181.2| COG0806: RimM protein, required for 16S rRNA processing
[Magnetospirillum magnetotacticum MS-1]
Length = 168
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFIATFSGIDNI 70
I HG+ G V I S+ +P D+ Y N+ + R+ IAT G+ +
Sbjct: 2 IVGVHGVRGAVRIKSFTEDPADIGFYSPVENEAGGTKFRLKVTGEVKGLVIATLEGVCDR 61
Query: 71 HSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSI 130
+A L+ +L+ R+ L EDEF TDL + + GK G V V ++GAG +
Sbjct: 62 DAAEALKGTELWVARERLPR--LAEDEFLYTDLIGLVAYGVDGKRLGIVKAVADYGAGDV 119
Query: 131 LEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
L+IK + ++PFTK +V EV++ ++++ P + K+
Sbjct: 120 LDIKLEPKGDMMVPFTKDSVPEVDIAGARLVVIPPVYAPDENEEKS 165
>gi|297626597|ref|YP_003688360.1| 16S rRNA processing protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922362|emb|CBL56934.1| 16S rRNA processing protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 183
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 5/172 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---SNDNRELRILKMYRKNKRFIATF 64
V++A IG HG+ GE+ + + P R + S+ +R + + R + T
Sbjct: 6 VVVAVIGRAHGVRGELTLTVRTDEPDRRLRKGVRLRASDPDRSFVVESARWVSGRLVVTL 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + ++A LR L+A + E E EF++ L M + G V V +
Sbjct: 66 GGVADRNAAEALRGTVLFADVPRDERPEDSE-EFYDRQLIGMAVELADQRRVGVVSDVLH 124
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
A +L ++ L+PF + V V+ + + + + +++ + +
Sbjct: 125 LPAQDVLSVRTDAG-ERLVPFVRELVPHVDAEAGVVRLADVPGLVDDRAIDD 175
>gi|295693162|ref|YP_003601772.1| ribosome maturation factor rimm [Lactobacillus crispatus ST1]
gi|295031268|emb|CBL50747.1| Ribosome maturation factor rimM [Lactobacillus crispatus ST1]
Length = 171
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV + + P D + ++ L + K + ++ F+
Sbjct: 6 VARILTTHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEAD--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED 171
>gi|223986421|ref|ZP_03636426.1| hypothetical protein HOLDEFILI_03738 [Holdemania filiformis DSM
12042]
gi|223961617|gb|EEF66124.1| hypothetical protein HOLDEFILI_03738 [Holdemania filiformis DSM
12042]
Length = 179
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 8/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
+ K++ + I T G+ GE+ + + + V ++E+ I +
Sbjct: 12 MKKMI-IGKIVNTFGIRGELKVVPDTDFVEERFAPGQTLTVCLPEGDQEVTIAAVKEHKG 70
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ G+ NI+ + +L ++ L E E++ L+ ++ D QG G
Sbjct: 71 LLLVLLEGVTNINQVERYKGCELAVDQEALP--PLAEGEYYFFQLKGLKAIDPQGNELGT 128
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + A +++ +K K LIP+ V +V+LQ I +D I L
Sbjct: 129 VVRMEASAAQNLIRLKKPDGKQALIPYIDVFVKQVDLQAKTITLDLIEGLL 179
>gi|291166845|gb|EFE28891.1| 16S rRNA processing protein RimM [Filifactor alocis ATCC 35896]
Length = 167
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 4/165 (2%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ TI HGL GEV + + ++ Y++ +L + + F
Sbjct: 5 RIGTIVKPHGLKGEVKVYPHTDDLSRFEDATYLIVGGTEEKLEVQSTREQKGMIFLKFKD 64
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ I S L +LY + + ELEEDE+ L +E + G V +
Sbjct: 65 KNTIESIEYLLRKELYVDGDNMR--ELEEDEYMIDTLIGLEVYLEDDTKIGVVTDFLQYT 122
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
A + I + +IPF K V +++++ K+ I PI +
Sbjct: 123 ANDVFVITLESGQKAMIPFLKQFVPKIDMEHQKMRIRPIKGMIEE 167
>gi|253997438|ref|YP_003049502.1| 16S rRNA processing protein RimM [Methylotenera mobilis JLW8]
gi|253984117|gb|ACT48975.1| 16S rRNA processing protein RimM [Methylotenera mobilis JLW8]
Length = 196
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 33/190 (17%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKNKRF 60
D +V+M I +G+ G + + + D + + L +D RE+ + N
Sbjct: 4 DNMVVMGRIVAPYGVYGWLKVVPDTEAIDGLFDYDSWWLGKGDDWREMVVETAKIHNDVI 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ GID+ +A + ++ R E +E+E++ +DL + + QG +G +
Sbjct: 64 VVKLVGIDDRDAAFACKGKQIAVPRAQLP--EPDENEYYWSDLVGLRVTNSQGVDFGVIT 121
Query: 121 GVYNFGAGSILEIKNTM---------------------------EKTFLIPFTKFAVLEV 153
V+ GA +L +K + LIPF VL V
Sbjct: 122 EVFETGANDVLVVKPDALVKPDSSAKADSKAKSDAVPVEAGKDKPQERLIPFVADVVLTV 181
Query: 154 NLQENKILID 163
+L+ +L+D
Sbjct: 182 DLEAKSMLVD 191
>gi|309804277|ref|ZP_07698354.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|312871868|ref|ZP_07731952.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|312872444|ref|ZP_07732513.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|315653409|ref|ZP_07906331.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
gi|308163680|gb|EFO65950.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|311092026|gb|EFQ50401.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|311092590|gb|EFQ50950.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|315489334|gb|EFU78974.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
Length = 173
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P N Y+ + ++ + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WG 117
++ F I++I A+ + + LY +D +L + ++ L ++ FD + K G
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKTKIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EI + K F IP V +V+L KI + + +
Sbjct: 119 ILTDIEMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN 173
>gi|262046942|ref|ZP_06019902.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
gi|260572924|gb|EEX29484.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
Length = 171
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV + + P D + ++ L + K + ++ F+
Sbjct: 6 VARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEAD--RGELPEGVYYYKDIFDCNVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED 171
>gi|83589818|ref|YP_429827.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
gi|109893023|sp|Q2RJV5|RIMM_MOOTA RecName: Full=Ribosome maturation factor rimM
gi|83572732|gb|ABC19284.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
Length = 176
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 4 LD-KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSN--DNRE-----LRILK 52
+D + + + I THG+ GEV + + P R +L D RE + ++
Sbjct: 1 MDTERIGVGKIIGTHGIRGEVKVFPLTDFPERFRPGTRLILEQEGADGREGRTFPVTVIS 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ I + I++ A +R L + ++ E L E ++ L +
Sbjct: 61 VRPGKGNLILKLAEINDADQAGAVRGATLKVEP--WEVEPLPEGHYYIYQLLGSRVYTTG 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G + + GA + ++N LIP K V +V+L +I ++ +
Sbjct: 119 GEFLGILRDILATGANDVYVVRNEDAGEILIPALKTVVRQVDLARKEIRVELPPGLRD 176
>gi|296158304|ref|ZP_06841136.1| 16S rRNA processing protein RimM [Burkholderia sp. Ch1-1]
gi|295891640|gb|EFG71426.1| 16S rRNA processing protein RimM [Burkholderia sp. Ch1-1]
Length = 247
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 72 DAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSD 131
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+
Sbjct: 132 SVVAHLGGVTDRDVALALRGSRVYISRSEFPA--LGVDEFYWVDLLGLDVVNVAGVNLGK 189
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I+ + LIPF V V+ +I +D
Sbjct: 190 VADMVDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKRITVD 242
>gi|309781071|ref|ZP_07675809.1| 16S rRNA processing protein RimM [Ralstonia sp. 5_7_47FAA]
gi|308920137|gb|EFP65796.1| 16S rRNA processing protein RimM [Ralstonia sp. 5_7_47FAA]
Length = 213
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLY--------SNDNRELRILKM 53
D LV + +G +G+ G + + + A+ ++ + L S D R +
Sbjct: 41 PDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATSADWRVFPVGTS 100
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + A LR ++ R DF E ++DEF+ DL + Q
Sbjct: 101 REHSGTVVAGSPAAPDRNVAEALRGYAVWVSRADFP--EPDDDEFYWVDLIGATVVNEQQ 158
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL + E L+PF + V V++ +I++D GL+
Sbjct: 159 ETLGTVGGLIDNGAHQILRVVGEGEVERLVPFVEVYVKSVDVAGKRIVVD---WGLD 212
>gi|319790555|ref|YP_004152188.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
gi|317115057|gb|ADU97547.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
Length = 190
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN----NPIDLNRYVLYSNDNRE-LRILKMYRKNKRFIA 62
VL+ + HGL GE+ + S ++ ++ LY +E + + + ++
Sbjct: 25 VLIGKVVGVHGLKGELKVKSESDIFERQLEAVDSLTLYRGTRKEEVTVESVKPYKDIYLI 84
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I++ A E +L+ + ELEE EF+ +L ++ F G+ G + +
Sbjct: 85 KFKEINDRSQAEETIGGELWIDENE--RVELEEGEFYYEELLGLKVFTEDGRELGVIKNI 142
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A ILE++ + KT LIPF + V E++L+ K+ + I
Sbjct: 143 LEQPASHILEVEKSDGKTVLIPFIEQFVKEIDLKNGKVTVSLIEGM 188
>gi|259501564|ref|ZP_05744466.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|302191462|ref|ZP_07267716.1| 16S rRNA-processing protein RimM [Lactobacillus iners AB-1]
gi|325911843|ref|ZP_08174247.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
gi|259167082|gb|EEW51577.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|325476349|gb|EGC79511.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
Length = 173
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P Y+ + ++ + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISAGDQKVKMTVETARFHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WG 117
++ F I++I A+ + + LY +D +L + ++ L ++ FD + K G
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKRKIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EI + K F IP V +V+L KI + + +
Sbjct: 119 ILTDIEMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN 173
>gi|298346449|ref|YP_003719136.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 43063]
gi|298236510|gb|ADI67642.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 43063]
Length = 192
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 25/186 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYS-NDNRELRILKMYRKNKRFIAT 63
+ + IG G+ GEV + ++P +L + N L + + K F+ +
Sbjct: 3 LTVGIIGRASGVRGEVRVALRTDDPRSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQ---------------------DFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNDAETLSGTKLYIETDAPPLCADAGDTPDTTADPEAADYPETTENDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAMNLAGETLGTISDLLLAPAQDLLEVTTADGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DPIAAG 168
DP
Sbjct: 183 DPPGGL 188
>gi|256843366|ref|ZP_05548854.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|293381188|ref|ZP_06627196.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
gi|256614786|gb|EEU19987.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|290922228|gb|EFD99222.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
Length = 171
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGLNGEV + + P D + ++ L + K + ++ F+
Sbjct: 6 VARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEAD--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED 171
>gi|328911705|gb|AEB63301.1| 16S rRNA processing protein [Bacillus amyloliquefaciens LL3]
Length = 174
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNK 58
++ + I THG+ GEV + S + + + Y+ +++ + +R +K
Sbjct: 3 NRWFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFAEEAAEPVKVTVNTHRLHK 62
Query: 59 RF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F + F + +++ LR++ + +D + E +E F+ ++ E G+ G
Sbjct: 63 QFHLLQFKEMPSLNEVEHLRNMIIKVPEEDLGELEEDE--FYFHEIIGCEVVSEDGELIG 120
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V + GA + + +K LIP+ V ++N+ E KI+I + ++
Sbjct: 121 TVKEILTPGANDVWVVARKGKKDALIPYIASVVKDININEKKIMIHVMEGLIDE 174
>gi|303327977|ref|ZP_07358416.1| 16S rRNA processing protein RimM [Desulfovibrio sp. 3_1_syn3]
gi|302861803|gb|EFL84738.1| 16S rRNA processing protein RimM [Desulfovibrio sp. 3_1_syn3]
Length = 171
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM---YRKNKRFIAT 63
++ M T+ HG+ GE+ ID +A++P+ L+ + + R+++ R R +
Sbjct: 1 MIHMGTLARPHGIKGEICIDWHADSPLLLDAPLWLQAGDEPPRLVRALSCRRHKGRPLLL 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+ + +A LR K+ R +EDE + DL E F G+ G++ V
Sbjct: 61 LEGVTDRTAAEALRGQKILVSRDSLPPP--DEDEAYLEDLLGCEVFLPDGRRLGRLDHVE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
I I ++ L P ++ +L + IDP L
Sbjct: 119 YPADQEIWVIVTEQDQEILFPAQPCFIVGFDLDARTVTIDPPEGLLE 165
>gi|238651045|ref|YP_002916902.1| 16S rRNA-processing protein [Rickettsia peacockii str. Rustic]
gi|238625143|gb|ACR47849.1| 16S rRNA-processing protein [Rickettsia peacockii str. Rustic]
Length = 165
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAEHLKGYKIFCLRASLP--ELEEDEFYIADLTHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGA I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGASDIIEIEFSDQTTELLPFNKEFFPII 152
>gi|309805500|ref|ZP_07699545.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
gi|308165151|gb|EFO67389.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
Length = 173
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P N Y+ + ++ + + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETVRFHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWG 117
++ F I++I A+ + + LY +D +L + ++ L ++ FD G
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKTKIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EI + K F IP V +V+L KI + + +
Sbjct: 119 ILTDIEMPGANDIWEITPSKGKIFWIPNISSVVKQVDLVNKKIEVILLEGLRDEN 173
>gi|119962451|ref|YP_948176.1| 16S rRNA-processing protein RimM [Arthrobacter aurescens TC1]
gi|119949310|gb|ABM08221.1| 16S rRNA processing protein RimM [Arthrobacter aurescens TC1]
Length = 213
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + + P + +V+ L I +
Sbjct: 32 LQVARIGKPHGIRGEVTVQVLTDAPSERFVAGTEFVVEPASAGPLTIRSARWNKDILLLG 91
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I + ++A +R KL+ + ++ DE+ +E ++ +L +E + G+V +
Sbjct: 92 FEEIADRNAAEVIRGAKLFIETEELSDEDDDEG-WYEHELVGLEAR-VGSQVVGKVAALS 149
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+L + K LIPF V EVN++ ILI P + + + P
Sbjct: 150 TLPVQDLLTVTTEEGKEILIPFVDEIVPEVNVEGGYILITPPSGLF---EINDENAKEPK 206
Query: 184 DSAGKKS 190
D AG +
Sbjct: 207 DGAGDDA 213
>gi|59800629|ref|YP_207341.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA 1090]
gi|268594157|ref|ZP_06128324.1| ribosome maturation factor rimM [Neisseria gonorrhoeae 35/02]
gi|268602998|ref|ZP_06137165.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|268685943|ref|ZP_06152805.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
gi|67461229|sp|Q5FA58|RIMM_NEIG1 RecName: Full=Ribosome maturation factor rimM
gi|59717524|gb|AAW88929.1| putative 16S rRNA processing protein [Neisseria gonorrhoeae FA
1090]
gi|268547546|gb|EEZ42964.1| ribosome maturation factor rimM [Neisseria gonorrhoeae 35/02]
gi|268587129|gb|EEZ51805.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|268626227|gb|EEZ58627.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
Length = 169
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ SA LR + R+ F E EDE++ DL M ++
Sbjct: 61 NGELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|304389812|ref|ZP_07371771.1| 16S rRNA processing protein RimM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326988|gb|EFL94227.1| 16S rRNA processing protein RimM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 192
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 25/186 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYS-NDNRELRILKMYRKNKRFIAT 63
+ + IG G+ GEV + ++P +L + N L + + K F+ +
Sbjct: 3 LTVGIIGRASGVRGEVRVALRTDDPRSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQ---------------------DFKDEELEEDEFFNTD 102
F I + + A L KLY + D+ + +D F+ +
Sbjct: 63 FQEIPDRNDAETLSGTKLYIETDAPPLCTDPGDTSDTTADPETADYPETTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAMNLAGETLGTISDLLLAPAQDLLEVTTAQGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DPIAAG 168
DP
Sbjct: 183 DPPGGL 188
>gi|290476250|ref|YP_003469150.1| 16S rRNA processing protein [Xenorhabdus bovienii SS-2004]
gi|289175583|emb|CBJ82386.1| 16S rRNA processing protein [Xenorhabdus bovienii SS-2004]
Length = 182
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+T+G+ G + + S D+ Y + S + + + N+ I
Sbjct: 12 DPIVLGKLGSTYGIRGWLRVFSSTERTEDIFEYQPWFIQRSGQWQHVELETWKYHNQDLI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID+ +A+ + ++ ELE +++ DL + G G +
Sbjct: 72 IKIKDIDDRDAANLFTNCEVVVDSTKLP--ELETGDYYWKDLMGCQVISIAGYNLGTIND 129
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILID 163
+ G+ ++ IK ++ K L+PF + +V+L I +D
Sbjct: 130 MMETGSNDVMVIKANLKDAFGIKERLVPFLDGQVIKKVDLATKTIEVD 177
>gi|291459091|ref|ZP_06598481.1| 16S rRNA processing protein RimM [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418345|gb|EFE92064.1| 16S rRNA processing protein RimM [Oribacterium sp. oral taxon 078
str. F0262]
Length = 178
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 14/175 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------------SNDNRELRILKMYR 55
+ + I THGL GE+ + ++P RE + +
Sbjct: 5 LRVGMISATHGLKGELKVIPTTDDPKRFLELKKLRLRKKARGLRREDETEREFSVESVRF 64
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + + SGI+ I A LR +L+ R D L E E+F D + G+
Sbjct: 65 QKELVLLKLSGINRIEDAENLRGSELWIDRAD--AVALAEGEYFLGDYIGLRVLTEDGEE 122
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + GA + ++ + LIP ++ VLE +E + I + L+
Sbjct: 123 LGKIRSILETGANYVFSVEREGGRELLIPNSENCVLEKKPEEGYLRIHLLEGLLD 177
>gi|309808810|ref|ZP_07702695.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325913425|ref|ZP_08175791.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|329919878|ref|ZP_08276816.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
gi|308167936|gb|EFO70069.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325477194|gb|EGC80340.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|328936968|gb|EGG33398.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
Length = 173
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P Y+ + ++ + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISAGDQKVKMTVETARFHKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-WG 117
++ F I++I A+ + + LY +D +L + ++ L ++ FD + K G
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKRKIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA I EI + K F IP V +V+L K+ + + +
Sbjct: 119 ILTDIEMPGANDIWEITPSKGKPFWIPNISSVVKQVDLVNKKVEVILLEGLRDEN 173
>gi|261363724|ref|ZP_05976607.1| 16S rRNA processing protein RimM [Neisseria mucosa ATCC 25996]
gi|288568290|gb|EFC89850.1| 16S rRNA processing protein RimM [Neisseria mucosa ATCC 25996]
Length = 169
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M + V M I G+ G + I + YA++ +D + L + + +
Sbjct: 1 MTDTRQRVAMGYIKGVFGIKGWLKIAANTEYADSLLDYPEWQLSKDGKTLNVTLEAGKIV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F GID+ A LR + R++F E EDE++ DL M ++
Sbjct: 61 SGELQVKFEGIDDRDQAFALRGYTIEIPREEFAPTE--EDEYYWADLVGMTVVNKDDIVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ + I D GL+
Sbjct: 119 GKVTNLMETGANDVLMINGEHGQ-ILIPFVSNYIETVDTESKTITAD---WGLD 168
>gi|187924952|ref|YP_001896594.1| 16S rRNA-processing protein RimM [Burkholderia phytofirmans PsJN]
gi|209573555|sp|B2T606|RIMM_BURPP RecName: Full=Ribosome maturation factor rimM
gi|187716146|gb|ACD17370.1| 16S rRNA processing protein RimM [Burkholderia phytofirmans PsJN]
Length = 248
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 73 DAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERKSAPSLQAKMHSD 132
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+
Sbjct: 133 SVVAHLGGVTDRDVALALRGSRVYISRSEFPA--LGADEFYWVDLLGLDVVNVAGVNLGK 190
Query: 119 VCGVYNFGAGSILEIKNTME--------KTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I+ LIPF V V+ +I +D
Sbjct: 191 VADMIDNGAHSVLRIEYPDTDKSGKPVIGERLIPFVGVFVKTVDQAAKQITVD 243
>gi|331006913|ref|ZP_08330158.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC1989]
gi|330419233|gb|EGG93654.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC1989]
Length = 175
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ L+ + I + G+ G V + S P ++ Y + ++ + + + K
Sbjct: 1 MSDLLNVGRITSVFGIKGWVKVHSQTEPPENIFNYQPWYLKTAHGVKPIELADWRAHGKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET---FDRQGKYW 116
F+A GID+ ++A L + + ++ L++ EF+ LE + F Q +
Sbjct: 61 FVAQIVGIDDRNAAELLCPVDIAIEKDKL--SALDDGEFYWHQLEGLRVISRFSNQSYDF 118
Query: 117 GQVCGVYNFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G V + GA +L + + LIP+ V +++L + +D
Sbjct: 119 GIVKKILPTGANDVLVVVGDEQSIDQSERLIPYVPDQFVSDIDLANGVMTVD 170
>gi|282900724|ref|ZP_06308666.1| 16S rRNA processing protein RimM [Cylindrospermopsis raciborskii
CS-505]
gi|281194524|gb|EFA69479.1| 16S rRNA processing protein RimM [Cylindrospermopsis raciborskii
CS-505]
Length = 211
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 19/184 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRK- 56
LD + + I GL GE+ + + P R++L + + ++ +
Sbjct: 27 PNLDDWIEIGKIVAPQGLTGEMRVYPETDFPERFEEPGTRWLLLPGEPSPEPVQLLHGRY 86
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
++ GI + +A LR+ +L+ D EL EF DL + F ++
Sbjct: 87 IEGKNLYVIKLHGIGDRTAAENLREGRLFVPIGDRP--ELAPGEFHVIDLIGLPVFMQES 144
Query: 113 GKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G+ G V + G +LE+K KT LIPF V V+L +I I P
Sbjct: 145 GERIGDVTDILPSG-HDLLEVKCDPSWNKNLGGKTVLIPFVMEIVPVVDLGNRRIEITPP 203
Query: 166 AAGL 169
L
Sbjct: 204 PGLL 207
>gi|15827851|ref|NP_302114.1| 16S rRNA-processing protein RimM [Mycobacterium leprae TN]
gi|221230328|ref|YP_002503744.1| 16S rRNA-processing protein RimM [Mycobacterium leprae Br4923]
gi|3914643|sp|O33016|RIMM_MYCLE RecName: Full=Ribosome maturation factor rimM
gi|254797758|sp|B8ZRW7|RIMM_MYCLB RecName: Full=Ribosome maturation factor rimM
gi|2251157|emb|CAB10628.1| hypothetical protein MLCB250.34 [Mycobacterium leprae]
gi|13093403|emb|CAC30567.1| 16S rRNA processing protein [Mycobacterium leprae]
gi|219933435|emb|CAR71711.1| 16S rRNA processing protein [Mycobacterium leprae Br4923]
Length = 179
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 10/171 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSNDNRELRILKMYRKNKR 59
+ + + HG+ GEV ++ ++P + R ++ R
Sbjct: 10 LTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHGAR 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +G+ + +A LR D + E D +++ LE ++ G+ G V
Sbjct: 70 LLVRLAGVSDRDAADALRGSLFVIDSLDLPPID-EPDTYYDHQLEGLQVRTMMGRDVGVV 128
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + AG +L ++ L+PF V V+L + + IDP L+
Sbjct: 129 AEVLHTAAGELLAVRCDSG-EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLD 178
>gi|293397633|ref|ZP_06641839.1| 16S rRNA processing protein RimM [Neisseria gonorrhoeae F62]
gi|291611579|gb|EFF40648.1| 16S rRNA processing protein RimM [Neisseria gonorrhoeae F62]
Length = 169
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ SA LR + R+ F E EDE++ DL M ++
Sbjct: 61 NGELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA IL I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|86607822|ref|YP_476584.1| 16S rRNA-processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|109893060|sp|Q2JPG6|RIMM_SYNJB RecName: Full=Ribosome maturation factor rimM
gi|86556364|gb|ABD01321.1| 16S rRNA processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 179
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 12/179 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRI----LK 52
M + +L+ + HGL G + + +++ P R++ D L +
Sbjct: 2 MARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEGQ 61
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ ++ GI N A +L L+ +E+ DL + + Q
Sbjct: 62 FFPAKGLYLVRLEGIPNRTVAETWVGARLLVPASH--RLPLQPEEYHYRDLIGLAVY-HQ 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+ GQV G+ G +LEI + + LIPF K V V+L++ + + P + +
Sbjct: 119 GELLGQVSGILAAG-QDVLEITTSDHRQVLIPFVKALVPVVDLEKGALHVQPPPGLVES 176
>gi|268316591|ref|YP_003290310.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
gi|262334125|gb|ACY47922.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
Length = 179
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRK 56
V D+L+LM + HG+ G + ++P R +R+ ++ +
Sbjct: 4 VDPDELLLMGYVARAHGVRGAFKVVPETDDPTRFETLETIYVGRSPETARPVRLERVQYQ 63
Query: 57 NKR----FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
R + + + + +A LR L++YA+R D L E EFF DL +
Sbjct: 64 PTRRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLP--PLAEGEFFLHDLIGLRVETEA 121
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ G V V A I + ++P + V E++L+ +++I PI L+
Sbjct: 122 GETVGTVIEVLEMPAHLIYVVGRPGRPHAMVPDVEVFVRELDLEGRRLVIRPIEGLLD 179
>gi|89900196|ref|YP_522667.1| 16S rRNA-processing protein RimM [Rhodoferax ferrireducens T118]
gi|109893040|sp|Q21YL7|RIMM_RHOFD RecName: Full=Ribosome maturation factor rimM
gi|89344933|gb|ABD69136.1| 16S rRNA processing protein RimM [Rhodoferax ferrireducens T118]
Length = 187
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR--------ELRILKMY 54
+ + I G+ G + Y+ +P L R+ L + +L I +
Sbjct: 13 DAIEVGRIADAWGIKGWFKVLPYSADPEALFSARRWFLLPAEKGAKTFSGVAQLAIKEAK 72
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ +A+ +D+ +A LR +++ R F E +DE++ DL + +R+G
Sbjct: 73 VHSDTVVASAQAVDDRTAAEALRGARIFVARSSFPSAE--KDEYYWVDLIGLNVVNREGV 130
Query: 115 YWGQVCGVYNFGAGSILEIK---NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + + GA ++L ++ + + +IPF + EV+L ++IL+D
Sbjct: 131 AMGTVKELLSTGAQTVLVLEYSQDGKAQERMIPFVSVYIDEVDLPGHRILVD 182
>gi|76797711|ref|ZP_00779979.1| 16S rRNA processing protein RimM [Streptococcus agalactiae 18RS21]
gi|76586935|gb|EAO63425.1| 16S rRNA processing protein RimM [Streptococcus agalactiae 18RS21]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S + + + L+ N+ ++ I ++
Sbjct: 59 EYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKGQVLALFDEKNQFVMDIEIASHRKQKN 118
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L D L++ EF+ ++ ++ ++ + + G+
Sbjct: 119 FDIIKFKGMYHINDIEKYKGFTLKVAEDQLSD--LKDGEFYYHEIIGLDVYEGE-ELIGK 175
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + ++ ++ L+P+ VLEV+L ++ ++ + +
Sbjct: 176 IKEILQPGANDVWVVERHGKRDLLLPYIPPVVLEVDLSNQRVQVELMEGLDDED 229
>gi|296314964|ref|ZP_06864905.1| 16S rRNA processing protein RimM [Neisseria polysaccharea ATCC
43768]
gi|296838161|gb|EFH22099.1| 16S rRNA processing protein RimM [Neisseria polysaccharea ATCC
43768]
Length = 169
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTNTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ SA LR + R+ F E EDE++ DL M ++
Sbjct: 61 NSELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|225028003|ref|ZP_03717195.1| hypothetical protein EUBHAL_02272 [Eubacterium hallii DSM 3353]
gi|224954717|gb|EEG35926.1| hypothetical protein EUBHAL_02272 [Eubacterium hallii DSM 3353]
Length = 169
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR----KNKR 59
++ L + I THGL GEV + ++ D + I K + +
Sbjct: 1 MEDLFQVGIITGTHGLKGEVKVFPTTDDKERFLDLDTVLIDTGKELIEKKVQYCKFFKQF 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F G+D+I+ + + L R++ LEEDE++ DL + D G G++
Sbjct: 61 VFVKFEGLDDINDVEKYKRCPLKVTREN--AVPLEEDEYYVADLLGLTIVDESGVTIGEL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GA + E+K L+P K +L+V+++E IL+ + ++
Sbjct: 119 IDVIETGANDVYEVKTPDGGHVLLPAIKDCILDVDMEEKIILVHMLKGLVD 169
>gi|33864216|ref|NP_895776.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9313]
gi|33635800|emb|CAE22125.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9313]
Length = 181
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVL-YSNDNRELRILKMYR 55
M + + + + G+ GE+ I+ ++ P R++ + + R + +L +
Sbjct: 6 MNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQ 65
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
R ++ F+G++N ++A L KL D L E EF DL +E + +
Sbjct: 66 LPGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAE 123
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G V +LEI+ + L+PF + V EV L + + + P L
Sbjct: 124 GPAIGHVID-LTTAGNDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE 180
>gi|114567015|ref|YP_754169.1| 16S rRNA processing protein RimM [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122317986|sp|Q0AWV6|RIMM_SYNWW RecName: Full=Ribosome maturation factor rimM
gi|114337950|gb|ABI68798.1| 16S rRNA processing protein RimM [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 172
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR--ELRILKMYRKNKRF 60
DKLV + I T+G G + + + P + V+ + + + + N +
Sbjct: 4 DKLVAIGKIAGTYGYAGWLKVIPLTDFPERFYKLDKVILNQGGKLGTFLVDGLKAHNNFY 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ FSGID + A ++ L + L E F++ L+ + +D + G++
Sbjct: 64 LFKFSGIDTVEVAQGFQNGILQIDESEL--YPLPEGYFYHFQLQGLSVYDEEKGLLGELT 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+ GA + + + LIP K +L V L+E ++ I + + +
Sbjct: 122 DIIETGANDVYVVDSPQYGEILIPAIKDVILAVKLEEKRMEIKLLPGLIED 172
>gi|331002000|ref|ZP_08325520.1| 16S rRNA processing protein RimM [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411796|gb|EGG91201.1| 16S rRNA processing protein RimM [Lachnospiraceae oral taxon 107
str. F0167]
Length = 169
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+ + I ++HG+ GE + +++ L + Y L I + +
Sbjct: 1 MIDRFRVGVITSSHGIKGEAKVYPTSDDSNRLKKIKKVYADIKGVETSLDIETVRFQKNM 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + LR+ L+ R + L+++E + DL ++ G G+V
Sbjct: 61 ALVKFKQFNTPEEIQALRNTDLFVDRDN--ATPLKKNENYIADLIGLDVIGEDGNILGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V+ GA ++E+ + EK L P+ +L+VNL+E KI + + L+
Sbjct: 119 TDVFPTGANHVMEV-DMGEKKVLFPYISQCILDVNLEEGKIFVHVLDGLLD 168
>gi|320096203|ref|ZP_08027791.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 178
str. F0338]
gi|319976868|gb|EFW08623.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 178
str. F0338]
Length = 170
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFSGID 68
A IG HGL GEV +D +++P L ++ S + + R +A G+
Sbjct: 6 AIIGPAHGLKGEVVLDVRSDDPAVLAPGASLVLSGSGSGVVVESTRVHKGRVLARLGGVG 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A LR L D EED ++ L+ + D QG+ G V G+ GA
Sbjct: 66 TREEAEALRGAALLVAPHD------EEDAWYPHQLKGLRAEDPQGRPLGSVSGLRPGGAQ 119
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
+L + T ++PF + V V+++ +++IDP ++
Sbjct: 120 DLLLV-GTERGEVMVPFVRQLVPTVDVEGGRVVIDPPPGLFDD 161
>gi|161525403|ref|YP_001580415.1| 16S rRNA-processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|189349860|ref|YP_001945488.1| 16S rRNA-processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|221201284|ref|ZP_03574324.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2M]
gi|221206262|ref|ZP_03579275.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2]
gi|209573548|sp|A9ADT0|RIMM_BURM1 RecName: Full=Ribosome maturation factor rimM
gi|160342832|gb|ABX15918.1| 16S rRNA processing protein RimM [Burkholderia multivorans ATCC
17616]
gi|189333882|dbj|BAG42952.1| 16S rRNA processing protein [Burkholderia multivorans ATCC 17616]
gi|221173571|gb|EEE06005.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2]
gi|221179134|gb|EEE11541.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD2M]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ + R+ L R RI++
Sbjct: 46 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTH 105
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ + Q
Sbjct: 106 GDTVVAQPAGVGDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLDVVNEQSATL 163
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + GA SI+ ++ LIPF V V+ +I++D
Sbjct: 164 GKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVD 218
>gi|308235877|ref|ZP_07666614.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14018]
Length = 194
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFI 61
+ L+ + IG GL GEV + + + P + + + + RE I R+I
Sbjct: 15 NNLLRVCRIGKAQGLKGEVTVQIFTDEPYERFKAGNVLYTQDGEREFTIESARTFKSRWI 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-------K 114
F N + A L L+LY K Q ++ E +E+ ++ DL + + +
Sbjct: 75 LLFEQSLNRNDAEALNGLELYTKAQSAQELE-QENAWYIKDLVGLSARICENNSLGVAPR 133
Query: 115 YWGQVCGVYNFGAGSILEIKN----TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + GA S+L+I+ +KT L+PF + V EVNL+E + +DP +
Sbjct: 134 EIGKVVDVID-GAQSLLKIRLSTPVGDDKTALVPFVQALVPEVNLKEKYLTLDPPGGLI 191
>gi|311115027|ref|YP_003986248.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14019]
gi|310946521|gb|ADP39225.1| 16S rRNA processing protein RimM [Gardnerella vaginalis ATCC 14019]
Length = 198
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKNKRFI 61
+ L+ + IG GL GEV + + + P + + + + RE I R+I
Sbjct: 19 NNLLRVCRIGKAQGLKGEVTVQIFTDEPYERFKAGNVLYTQDGEREFTIESARTFKSRWI 78
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-------K 114
F N + A L L+LY K Q ++ E +E+ ++ DL + + +
Sbjct: 79 LLFEQSLNRNDAEALNGLELYTKAQSAQELE-QENAWYIKDLVGLSARICENNSLGVAPR 137
Query: 115 YWGQVCGVYNFGAGSILEIKN----TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + GA S+L+I+ +KT L+PF + V EVNL+E + +DP +
Sbjct: 138 EIGKVVDVID-GAQSLLKIRLSTPVGDDKTALVPFVQALVPEVNLKEKYLTLDPPGGLI 195
>gi|91784786|ref|YP_559992.1| 16S rRNA-processing protein [Burkholderia xenovorans LB400]
gi|123062644|sp|Q13VE9|RIMM_BURXL RecName: Full=Ribosome maturation factor rimM
gi|91688740|gb|ABE31940.1| 16S rRNA processing protein RimM [Burkholderia xenovorans LB400]
Length = 244
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-LRILKMYRKNK 58
V + I +GL G V + ++A+ + R+ L R+ L+ +
Sbjct: 69 DAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLLKGQERKSAPSLQAKTHSD 128
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+ + A LR ++Y R +F L DEF+ DL ++ + G G+
Sbjct: 129 SVVAHLGGVTDRDVALALRGSRVYISRSEFPA--LGADEFYWVDLLGLDVVNVAGVSLGK 186
Query: 119 VCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + GA S+L I+ + LIPF V V+ +I +D
Sbjct: 187 VADMIDNGAHSVLRIEYPATDKSGKPVTGERLIPFVGVFVKTVDQAAKQITVD 239
>gi|332652593|ref|ZP_08418338.1| 16S rRNA processing protein RimM [Ruminococcaceae bacterium D16]
gi|332517739|gb|EGJ47342.1| 16S rRNA processing protein RimM [Ruminococcaceae bacterium D16]
Length = 165
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR--ELRILKMYRKNKRFIA 62
++ + + + HGL GEV + +A++P L R+ D + + + I
Sbjct: 3 EQYLEVGKVTNVHGLMGEVRVQPWADSPDFLCRFKTLYVDKTHWPIEVERARVHKNMVII 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
F G+ +++ A +R+ LY R D L + FF D+ +E D Q + G+V
Sbjct: 63 KFHGVTDVNGALAMRNAILYIDRDDA---NLPKGSFFLADIYGLEVRDAQTDEVLGKVDD 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ A ++ ++ ++ +IP V E+N+ E + + I
Sbjct: 120 ILTPPANNVYVVRG-GKREIMIPAVDQFVKEINVDEGYMKVALIEGM 165
>gi|254493078|ref|ZP_05106249.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 1291]
gi|260441169|ref|ZP_05794985.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae DGI2]
gi|268598336|ref|ZP_06132503.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|268600689|ref|ZP_06134856.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|268683640|ref|ZP_06150502.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|291044498|ref|ZP_06570207.1| ribosome maturation factor rimM [Neisseria gonorrhoeae DGI2]
gi|226512118|gb|EEH61463.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 1291]
gi|268582467|gb|EEZ47143.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|268584820|gb|EEZ49496.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|268623924|gb|EEZ56324.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|291011392|gb|EFE03388.1| ribosome maturation factor rimM [Neisseria gonorrhoeae DGI2]
Length = 169
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDAQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ SA LR + R+ F E EDE++ DL M ++
Sbjct: 61 NGELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|73748405|ref|YP_307644.1| 16S rRNA processing protein RimM [Dehalococcoides sp. CBDB1]
gi|147669185|ref|YP_001214003.1| 16S rRNA processing protein RimM [Dehalococcoides sp. BAV1]
gi|289432453|ref|YP_003462326.1| 16S rRNA processing protein RimM [Dehalococcoides sp. GT]
gi|109893012|sp|Q3ZZT5|RIMM_DEHSC RecName: Full=Ribosome maturation factor rimM
gi|189040133|sp|A5FRP5|RIMM_DEHSB RecName: Full=Ribosome maturation factor rimM
gi|73660121|emb|CAI82728.1| 16S rRNA processing protein RimM [Dehalococcoides sp. CBDB1]
gi|146270133|gb|ABQ17125.1| 16S rRNA processing protein RimM [Dehalococcoides sp. BAV1]
gi|288946173|gb|ADC73870.1| 16S rRNA processing protein RimM [Dehalococcoides sp. GT]
Length = 166
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ ++ +L+ + G++G + I + P + + I + + + I
Sbjct: 1 MTQEEYILIGKVLGVWGISGGLKIGVLTDFPERFDAGNELLVGRKLYTISQTNWQKAQVI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
SGID+I +A EL+D + K EL E +++ L +E D G GQ+
Sbjct: 61 VHLSGIDDIDTALELKDALVEIPASALK--ELPEGVYYDFQLIGLEVVDLSGVKIGQIKE 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + I + + K LIP K V E+NL+ KI+IDPI L+
Sbjct: 119 ILHMPSNDIY-VSSYGVKEALIPAIKDVVKEINLKTGKIIIDPIPGLLD 166
>gi|116628129|ref|YP_820748.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus LMD-9]
gi|122267275|sp|Q03JS0|RIMM_STRTD RecName: Full=Ribosome maturation factor rimM
gi|116101406|gb|ABJ66552.1| 16S rRNA processing protein RimM [Streptococcus thermophilus LMD-9]
Length = 172
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 70/170 (41%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDN----RELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + +D ++ + + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFTDERFKKKSVLALFDDKDNYIMDVEVASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ + GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVY-EGNTLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|294339610|emb|CAZ87969.1| putative 16S rRNA processing protein RimM [Thiomonas sp. 3As]
Length = 180
Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVL----YSNDNRELRILKM 53
M D L L+ I G+ G V + A L + L + N+ + + +
Sbjct: 1 MAIPDNLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +A G ++ A LR ++ +R DF +E EF+ DL E +G
Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPP--DEGEFYWADLIGCEVRSPEG 118
Query: 114 KYWGQVCGVYNFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G+V G+ A ++L ++ + + LIPF + ++ V+L I+
Sbjct: 119 ADLGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIVSVDLPAKTII 172
>gi|237653445|ref|YP_002889759.1| 16S rRNA processing protein RimM [Thauera sp. MZ1T]
gi|237624692|gb|ACR01382.1| 16S rRNA processing protein RimM [Thauera sp. MZ1T]
Length = 172
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSND------NRELRILKMYRKN 57
++++ I G+ G + I + ++P +++ + L S+D ++ +
Sbjct: 1 MIVLGRIVAPFGVQGWIKIHPFGDDPASWRNMSHWWLCSDDDAPAEAWKQYTLSACRPHG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +A + I + +A + + A R+ E E++ DL + + G+ G
Sbjct: 61 KGLVAALAEISDRGAAEAIDGFYIAAPREALPKP--AEGEYYWGDLVGLAVENEAGEAMG 118
Query: 118 QVCGVYNFGAGSIL---EIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V G+ + GA +L E + LIPF VL+V+L +I +
Sbjct: 119 TVAGLISTGAHDVLQVREGEGEEGVERLIPFVAAYVLDVDLATRRIRV 166
>gi|315651819|ref|ZP_07904823.1| 16S rRNA processing protein RimM [Eubacterium saburreum DSM 3986]
gi|315485949|gb|EFU76327.1| 16S rRNA processing protein RimM [Eubacterium saburreum DSM 3986]
Length = 180
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
K+ + I ++HG+ GE + +++ L + Y L I + +
Sbjct: 10 NKMIDRFRVGVITSSHGIKGEAKVYPTSDDSNRLKKIKKVYADIKGVETVLDIETVRFQK 69
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ F + LR+ L+ R + L+++E + DL +E D G G
Sbjct: 70 NMALVKFKQFNTPEEIQALRNTDLFVDRDN--AIPLKKNENYIADLIGLEVTDEDGIILG 127
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+V V+ GA ++E+ + EK L P+ +L+VNL+E +I + + L+
Sbjct: 128 KVTDVFPTGANHVMEV-DMGEKKVLFPYISQCILDVNLEEGEIRVHVLDGLLD 179
>gi|304404223|ref|ZP_07385885.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
gi|304347201|gb|EFM13033.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
Length = 176
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI-------DLNRYVLYSNDNRELRILKMYRKN 57
+K + + THG+ GEV I + P L + N ++ ++ +
Sbjct: 3 EKWFTVGKLVNTHGIRGEVKIWPQTDFPDVRFAPGSKLTLFEEGKNGRLDVEVVSSRSQK 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ G DNI+ + + L QD D L+EDE++ ++ G+ G
Sbjct: 63 NVYVLKLKGYDNINDVEKYKGWILKVSEQDLID--LDEDEYYYHEIIGCVVITDAGEELG 120
Query: 118 QVCGVYNFGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + + GA + +K K LIP +++V++ KI + I +
Sbjct: 121 TVTEILSPGANDVWVVKGKGANGRPKEILIPVIDDVLVDVDVDSKKITVHLIEGLI 176
>gi|77165722|ref|YP_344247.1| 16S rRNA processing protein RimM [Nitrosococcus oceani ATCC 19707]
gi|254433785|ref|ZP_05047293.1| 16S rRNA processing protein RimM [Nitrosococcus oceani AFC27]
gi|109893026|sp|Q3J8X9|RIMM_NITOC RecName: Full=Ribosome maturation factor rimM
gi|76884036|gb|ABA58717.1| 16S rRNA processing protein RimM [Nitrosococcus oceani ATCC 19707]
gi|207090118|gb|EDZ67389.1| 16S rRNA processing protein RimM [Nitrosococcus oceani AFC27]
Length = 175
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ VL+ I +G+ G + + SY ++ Y + + + R+ K + K +
Sbjct: 12 RYVLVGRISGLYGVQGWLRVYSYTQPRNNILDYEPWYLQQNGAWQARRLRKGRVQGKGIV 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID A+ ++ R + E E++ +DL ++ QG+ GQV
Sbjct: 72 VALEGIDERDVAALWVGCEIAVHRDQLPPPQ--EGEYYWSDLIGLQVITLQGEVLGQVDR 129
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
+ GA +L ++ E+ L+PF V +V+LQ+ + +D
Sbjct: 130 LLETGANDVLVVR--GERERLLPFLMGMIVKQVDLQQGLLTVD 170
>gi|307546452|ref|YP_003898931.1| 16S rRNA processing protein RimM [Halomonas elongata DSM 2581]
gi|307218476|emb|CBV43746.1| 16S rRNA processing protein RimM [Halomonas elongata DSM 2581]
Length = 183
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 11/170 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKNKRFIAT 63
V++ + + +G+ G + + SY +D +VL + R+ + K +A
Sbjct: 14 VVLGKLTSPYGVKGWLRVYSYTSPMEGILDYGEWVLRHRGVESRYRLAQGRLHGKGLVAR 73
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D A L ++ + + ++D F+ LE + +G G+V ++
Sbjct: 74 LEGVDGRDQAESLAGAEVLLPTAELPELPEDDD-FYWYQLEGLSVVTTEGVALGRVEYLF 132
Query: 124 NFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILIDPIAA 167
GA ++ IK + L+PF V EV+L+ ++++D A
Sbjct: 133 ETGANDVMVIKGRDGESIDARERLLPFLPDEVVREVDLEAGRMVVDWDPA 182
>gi|115351000|ref|YP_772839.1| 16S rRNA-processing protein RimM [Burkholderia ambifaria AMMD]
gi|115280988|gb|ABI86505.1| 16S rRNA processing protein RimM [Burkholderia ambifaria AMMD]
Length = 237
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 59 PDDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTH 118
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q
Sbjct: 119 GDTVVAHAAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 176
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 177 GTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 231
>gi|323340728|ref|ZP_08080980.1| 16S rRNA processing protein RimM [Lactobacillus ruminis ATCC 25644]
gi|323091851|gb|EFZ34471.1| 16S rRNA processing protein RimM [Lactobacillus ruminis ATCC 25644]
Length = 170
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+ I THG+ GEV + S ++ + Y+ + ++K +RK+K+F
Sbjct: 2 NYYQVGKIINTHGIRGEVRVLSTSDFTDERFMPGNALYLFDKGALVKEVVVKTHRKHKQF 61
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +F +++I+ + + ++LE+ ++ + ++ G+ G++
Sbjct: 62 DLLSFEKLEDINLIEGFKGFDIKISEDQ--QQDLEDGSYYYHQIIGLDAVTLDGEKIGKI 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GA + + +K L+P + +V+L++ +++D + +
Sbjct: 120 SEILAPGANDVWVVNRKGKKELLLPVIDDVIKKVDLEQGLVVVDLLEGLDD 170
>gi|167586558|ref|ZP_02378946.1| 16S rRNA-processing protein [Burkholderia ubonensis Bu]
Length = 225
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI +
Sbjct: 48 PDDAVEVGAVVDAYGLKGWVKVMTHADAGRGGDALLNACRWWLEKGAERHAVRITQAKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR ++ +R+DF L+ DEF+ DL ++ + Q
Sbjct: 108 GDTVVAHLAGLGDRDAALALRGFRVSVRREDFPA--LDADEFYWVDLIGLDVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + GA SI+ I+ LIPF V V+ +I++D
Sbjct: 166 GKVIGMIDNGAHSIMRIEYPATGKDGQPAPAERLIPFVGVYVKTVDQAARRIVVD 220
>gi|255066582|ref|ZP_05318437.1| 16S rRNA processing protein RimM [Neisseria sicca ATCC 29256]
gi|255049166|gb|EET44630.1| 16S rRNA processing protein RimM [Neisseria sicca ATCC 29256]
Length = 169
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M + V M I G+ G + I + YA++ +D + L + + +
Sbjct: 1 MTDTRQRVAMGYIKGVFGIKGWLKIAANTEYADSLLDYPEWQLSKDGKTLNVTLEAGKIV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F GID+ A LR + R++F E EDE++ DL M ++
Sbjct: 61 SGELQVKFEGIDDRDQAFALRGYTIEIPREEFAPTE--EDEYYWADLVGMTVINKDNIVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ + I D GL+
Sbjct: 119 GKVTNLMETGANDVLMINGEHGQ-ILIPFVSNYIEAVDTEGKTITAD---WGLD 168
>gi|87199427|ref|YP_496684.1| 16S rRNA processing protein RimM [Novosphingobium aromaticivorans
DSM 12444]
gi|109893028|sp|Q2G8H3|RIMM_NOVAD RecName: Full=Ribosome maturation factor rimM
gi|87135108|gb|ABD25850.1| 16S rRNA processing protein RimM [Novosphingobium aromaticivorans
DSM 12444]
Length = 166
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKR-FI 61
D+ V +A I HG+ GEV + + L RY + S D L ++K+ K I
Sbjct: 3 DRPVTLAAITGAHGVAGEVRLKLFGEGVAALKRYRAFNDSGDGSGLTVVKIKDDGKGGAI 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F+ + + +A +LR L +R + L E E+++ DL + +G+ G+
Sbjct: 63 ARFAEVPDRTAAEKLRGTALTVRRSELPS--LPEGEYYHADLIGLPAVSTEGEMLGECIA 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V NFGAG ++EI+ K F++P AV E + +I+I+
Sbjct: 121 VENFGAGDVIEIRKADGKKFMVPMKTEAVPE--WTDERIVIE 160
>gi|87122823|ref|ZP_01078694.1| 16S rRNA processing protein RimM [Marinomonas sp. MED121]
gi|86161875|gb|EAQ63169.1| 16S rRNA processing protein RimM [Marinomonas sp. MED121]
Length = 181
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
++ + + I + +G+ G V I S+ + + +Y + + + + + + +
Sbjct: 10 PEQPLAVGRITSVYGVKGWVKIYSHTDPIEGIFKYSHWWLKTRTGWQAIELNQGRLQGRG 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A G + E+ + +Y + QD D L+E +++ + LE ++ +G G+V
Sbjct: 70 LVAAVKGYTDRDLVKEICGMDIYIEAQDLPD--LDEGDYYWSQLEGLKVITEEGVLLGKV 127
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKF-AVLEVNLQENKILI--DP 164
+ GA +L ++ + LIP+ VL V+L++ ++L+ DP
Sbjct: 128 AQMMETGANDVLVVRACEGSLDREERLIPYVPDMYVLNVDLKQGQMLVNWDP 179
>gi|48474357|sp|Q7V4K0|RIMM_PROMM RecName: Full=Ribosome maturation factor rimM
Length = 176
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVL-YSNDNRELRILKMYR 55
M + + + + G+ GE+ I+ ++ P R++ + + R + +L +
Sbjct: 1 MNGDEDWLTVGKVVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQ 60
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
R ++ F+G++N ++A L KL D L E EF DL +E + +
Sbjct: 61 LPGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAE 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G V +LEI+ + L+PF + V EV L + + + P L
Sbjct: 119 GPAIGHVID-LTTAGNDLLEIELLTGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE 175
>gi|116618573|ref|YP_818944.1| 16S rRNA processing protein RimM [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122271227|sp|Q03W51|RIMM_LEUMM RecName: Full=Ribosome maturation factor rimM
gi|116097420|gb|ABJ62571.1| 16S rRNA processing protein RimM [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 173
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 7/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR-ELRILKMYR 55
M + + TI THG+ GEV I + + D + + + R +++
Sbjct: 1 MTNTENYFKVGTIVNTHGIRGEVKIMAITDFAQDRFKKGADLFIDTKQGRIPVKVQSSRL 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F G+ NI+ + + +Y + ELE+D+++ ++ + D G
Sbjct: 61 HKNMWLVLFVGVTNINEIEKYKGDDVYIEGTARP--ELEDDQYYYDEIIDSTVVDLDGNK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + ++ + LIP V V++ I ID + L+
Sbjct: 119 IGVVKEIMETGANDVWIVQRDGQSDALIPMIDDVVKSVDVDAKLITIDALEGLLD 173
>gi|325694637|gb|EGD36545.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK150]
gi|328946423|gb|EGG40564.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1087]
Length = 224
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMY 54
VK+ + I T GL GE+ + S + + N+ L+ ++ ++ I
Sbjct: 51 VKM-NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNKLALFDKKDQFVMDVEIASHR 109
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ I F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++
Sbjct: 110 KAKNFDIIKFKGMYHINDIEKFRDFSLKVAEEDLAD--LEDGEFYYHEIIGLEVYEND-V 166
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G + + GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 167 LLGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDDE 223
>gi|184200710|ref|YP_001854917.1| putative 16S rRNA processing protein RimM [Kocuria rhizophila
DC2201]
gi|238689200|sp|B2GFY3|RIMM_KOCRD RecName: Full=Ribosome maturation factor rimM
gi|183580940|dbj|BAG29411.1| putative 16S rRNA processing protein RimM [Kocuria rhizophila
DC2201]
Length = 191
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL---------------NRYVLYSNDNRE----- 47
V +A IG HG+ GEV ++ + ++P R + D RE
Sbjct: 3 VRVARIGKPHGVRGEVTVELFTDDPQARFAPGSVLSIQHARGGRRGQGSAADAREPLAVQ 62
Query: 48 -LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEM 106
L + +A F I + ++A R L+L+A+ D LE+DE+ DL +
Sbjct: 63 SLTVTGHRWNKDVLVARFEEISDRNAAEAARGLELFAEVADLP---LEDDEWHQDDLLGL 119
Query: 107 ETFD--RQGKYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILID 163
D R G V + A +LEI +T L+PF + V EV+L +L+
Sbjct: 120 VAVDLTRGEARIGTVKALIQGSAQDLLEITPQGGGRTVLVPFVEEIVPEVDLDRGLVLVS 179
Query: 164 PIAAGLN 170
P L
Sbjct: 180 PPPGLLE 186
>gi|268596210|ref|ZP_06130377.1| ribosome maturation factor rimM [Neisseria gonorrhoeae FA19]
gi|268681472|ref|ZP_06148334.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
gi|268549998|gb|EEZ45017.1| ribosome maturation factor rimM [Neisseria gonorrhoeae FA19]
gi|268621756|gb|EEZ54156.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
Length = 169
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDAQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GID+ SA LR + R+ F E EDE++ DL M ++
Sbjct: 61 NGELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA IL I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|57239611|ref|YP_180747.1| 16S rRNA-processing protein RimM [Ehrlichia ruminantium str.
Welgevonden]
gi|58579600|ref|YP_197812.1| putative 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Welgevonden]
gi|58617654|ref|YP_196853.1| putative 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Gardel]
gi|75356891|sp|Q5FGP6|RIMM_EHRRG RecName: Full=Ribosome maturation factor rimM
gi|81352715|sp|Q5H9Z8|RIMM_EHRRW RecName: Full=Ribosome maturation factor rimM
gi|57161690|emb|CAH58620.1| putative 16S rRNA processing protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58417266|emb|CAI28379.1| Probable 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Gardel]
gi|58418226|emb|CAI27430.1| Probable 16S rRNA processing protein rimM [Ehrlichia ruminantium
str. Welgevonden]
Length = 172
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND--NRELRILKMYRKNKRFIA 62
+ + I + HG+ G V I ++ NP + Y ++ E+ I+++ KN IA
Sbjct: 3 SDFICLGIITSPHGIKGHVKIKTFTENPQNFTSYGKLTDGITTYEINIIQVVSKN-TIIA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ I + +A LR+ KL+ ++ + L E+EF+++DL ++ +G + +
Sbjct: 62 KINNITSRTNAELLRNKKLFIEKTKLPN--LIENEFYHSDLVGLQVILEDNNIFGTIKKI 119
Query: 123 YNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
YNFG+ I+EI +K+ ++PF+K +N +E +++
Sbjct: 120 YNFGSCDIIEILLYNSKKSTMLPFSKDIFTHINTKERYVILKLPE 164
>gi|90407076|ref|ZP_01215265.1| 16S rRNA-processing protein [Psychromonas sp. CNPT3]
gi|90311798|gb|EAS39894.1| 16S rRNA-processing protein [Psychromonas sp. CNPT3]
Length = 175
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL----YSNDNRELRILKMYRK 56
M + + +++ G HG+ G + I SY ++ + +Y Y+ +E+ I
Sbjct: 1 MSNVAEPIVIGKFGAVHGIKGWLKIHSYTDDAESIFQYKPLLMKYNGVMQEVNITDWKAH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F+A D + L ++L + D ED+F+ DL + +G +
Sbjct: 61 SGTFVAKIKSFDVREESQALVGVELLVNINELPDL---EDDFYWRDLIGCQVETDKGYHL 117
Query: 117 GQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNLQENKILID 163
G V + G+ +L +K +K LIPF K VL+VN+ I+++
Sbjct: 118 GAVTDMMETGSKDVLVVKANANDAFGQKQRLIPFIKEQVVLDVNITGKLIIVN 170
>gi|325133892|gb|EGC56548.1| 16S rRNA processing protein RimM [Neisseria meningitidis M13399]
Length = 169
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ DL M ++
Sbjct: 61 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|227510445|ref|ZP_03940494.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190097|gb|EEI70164.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 174
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 9/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNK 58
+ I T GL GEV + + + P + +++ + L I + +
Sbjct: 2 DYYNVGKIVNTQGLKGEVRVIAITDFPEKRFKKGNTIFAQTEKSKALISLEIDGVRKHKG 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F G I+ L+ L D++L+ E++ + ++ ++ GQ
Sbjct: 62 FVLLHFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVYEGD-NLIGQ 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + + GA + ++ +K L+P V EV+L+ +KI ++ I GL++
Sbjct: 121 IKEILSPGANDVWVVQRKAKKDLLLPKIDSVVKEVDLKNHKINVE-IPEGLDDA 173
>gi|55821405|ref|YP_139847.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus LMG
18311]
gi|55823330|ref|YP_141771.1| 16S rRNA-processing protein RimM [Streptococcus thermophilus
CNRZ1066]
gi|67461281|sp|Q5LYY1|RIMM_STRT1 RecName: Full=Ribosome maturation factor rimM
gi|67461287|sp|Q5M3J4|RIMM_STRT2 RecName: Full=Ribosome maturation factor rimM
gi|55737390|gb|AAV61032.1| 16S rRNA processing protein [Streptococcus thermophilus LMG 18311]
gi|55739315|gb|AAV62956.1| 16S rRNA processing protein [Streptococcus thermophilus CNRZ1066]
gi|312278733|gb|ADQ63390.1| Ribosome maturation factor rimM [Streptococcus thermophilus ND03]
Length = 172
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + L+ + + ++ + + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNYIMDVEVASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ + GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVY-EGNTLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|116490847|ref|YP_810391.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290890293|ref|ZP_06553372.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
gi|122276971|sp|Q04FP6|RIMM_OENOB RecName: Full=Ribosome maturation factor rimM
gi|116091572|gb|ABJ56726.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290480079|gb|EFD88724.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
Length = 166
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+ + + THG+ GE+ ID + P + +L + + ++ FS
Sbjct: 4 LRIGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLIAGEKLVVQSSRPFKQFWLVKFSD 63
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+NI+ + + ++ + K+ L E EF + + ++ D +G G++ ++ G
Sbjct: 64 HENINLVEKYKGEDIFI--NERKEPRLSEGEFLVSQIIGLKVIDEKGNSIGEIADSFHTG 121
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
A + IK + K LIP+ V +V+LQ + + I+ + +
Sbjct: 122 ANDVWTIKKSNGKEILIPYIDQVVKKVDLQTSTVTIELLEGLDED 166
>gi|257061858|ref|YP_003139746.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8802]
gi|256592024|gb|ACV02911.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8802]
Length = 186
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDN---RELRILKMY 54
M + + + I GL GE+ + S ++ P + L S D +E+ +++
Sbjct: 1 MDNSESWLEIGRIVAAQGLKGELKVMSSSDFPERFEKPGTRWLQSPDRLSIQEVELVRGR 60
Query: 55 --RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
++ + I + A LRD L D +L EDE+ +DL + + +Q
Sbjct: 61 YVPGKNLYVIKLAEIADRTQAETLRDYTLLVPSSDRP--QLNEDEYHVSDLINLTVYHQQ 118
Query: 113 -GKYWGQVCGVYNFGAGSILEI--------KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ G V + + G +LE+ +NT K LIPF V V+L +I I+
Sbjct: 119 TGEEIGVVTDMLSAG-NDLLEVQLNTLNSSENTSSKKVLIPFVYEIVPVVDLVNKRIEIN 177
Query: 164 PIAAGLN 170
P L
Sbjct: 178 PPVGLLE 184
>gi|320161004|ref|YP_004174228.1| putative 16S rRNA-processing protein RimM [Anaerolinea thermophila
UNI-1]
gi|319994857|dbj|BAJ63628.1| putative 16S rRNA-processing protein RimM [Anaerolinea thermophila
UNI-1]
Length = 187
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILKMYRKNKRFIATF 64
V + + HG++GE+ +D + P + R + + + +RI K+ ++ + F
Sbjct: 26 FVAVGFLRRPHGIHGEMLMDVLTDFPERMKPHRQLFLGDSHEPVRIEKVRWADQSMLIKF 85
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+D+ + R+ +Y L E ++++ L + +G++ G + +
Sbjct: 86 EGMDDAEALGRFRNTVVYVLADQLP--PLPEGQYYHHQLLGLRVVSDEGQFLGVLEQILE 143
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GA + + +K L+P + +L VNL++ ++++
Sbjct: 144 TGANDVYLVHTPEDKEILLPAIEEVILSVNLEDGEMVV 181
>gi|312143701|ref|YP_003995147.1| 16S rRNA processing protein RimM [Halanaerobium sp. 'sapolanicus']
gi|311904352|gb|ADQ14793.1| 16S rRNA processing protein RimM [Halanaerobium sp. 'sapolanicus']
Length = 173
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 1 MVKL-DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYR 55
M+KL DK + + I G GEV + + P ++ +++ EL I +
Sbjct: 1 MIKLQDKYIEIGKITRYQGNKGEVRVMPSTDIPQRFFELDSVFLKNADEFYELEIEYIRF 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ I F GID+I A EL++ ++ + L ED ++ DL + + Y
Sbjct: 61 HKQFVIIKFFGIDSIDQAEELKNSRVLIVESE--KYLLPEDSYYVDDLVGCKVYLSDDTY 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V V + I+ +K K +++P ++ ++E++L+ KI+ +PI L+
Sbjct: 119 LGKVIEVVDTSGTDIIIVKGEA-KEYMLPASREMIIEIDLEAEKIIYNPIQGLLD 172
>gi|332185778|ref|ZP_08387525.1| 16S rRNA processing protein RimM [Sphingomonas sp. S17]
gi|332014136|gb|EGI56194.1| 16S rRNA processing protein RimM [Sphingomonas sp. S17]
Length = 164
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+ V +A I HG+ GEV + +A + + ++ L + + IA F
Sbjct: 10 EPRVTLAVIIGAHGITGEVRLKVFAEDVSAYRAF-----NDGALTLKSAREGSNGVIARF 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + ++A LR +L R LEE E+++ D+ + G+ G V + N
Sbjct: 65 AEVTDRNAAEALRGTELTVPRSALP--PLEEGEYYHADIIGLPAIASDGEELGHVALIEN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG +LEI+ + F++P AV E + +++++
Sbjct: 123 FGAGDVLEIERPDGRRFMVPMKVEAVPEWDQD--RLIVE 159
>gi|317968417|ref|ZP_07969807.1| 16S rRNA-processing protein RimM [Synechococcus sp. CB0205]
Length = 198
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 18/185 (9%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----------SNDNRELR 49
M + +L+++ I GL GE+ ++ ++ P + + + RE++
Sbjct: 6 MEQQPELLVVGKIVAAQGLRGELRVNPLSDFPERFTQAGPRWLRAPAQKRGPAPEPREIQ 65
Query: 50 ILKMYRKNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+L R + F+ GID+ SA +L +L + EF DL +E
Sbjct: 66 LLSGRRLPGKELFVIRIEGIDDRSSAEACVGQELLVPSDQRP--KLSKGEFHLLDLMGLE 123
Query: 108 TF-DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL-IPFTKFAVLEVNLQENKILIDPI 165
G GQV + + G +LE++ + +K L IPF + V V L+E I I P
Sbjct: 124 VRLLETGTPIGQVQDLLHAG-NDLLEVQLSGKKQPLWIPFVESIVPRVELEEGWIGITPP 182
Query: 166 AAGLN 170
L
Sbjct: 183 PGLLE 187
>gi|159901131|ref|YP_001547378.1| 16S rRNA processing protein RimM [Herpetosiphon aurantiacus ATCC
23779]
gi|209573561|sp|A9B0N2|RIMM_HERA2 RecName: Full=Ribosome maturation factor rimM
gi|159894170|gb|ABX07250.1| 16S rRNA processing protein RimM [Herpetosiphon aurantiacus ATCC
23779]
Length = 174
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 5/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRF-I 61
D +L+ I G+ GE+ I +++P + + + + ++ I ++++ +
Sbjct: 7 DDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIGRLHQHKGSLYL 66
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+ +D +A ++ L+ Y R D L DE+F DL ++ G+ G+
Sbjct: 67 LRLNEVDTRDAAEAMQGLEAYIHRSD--AAPLANDEYFLHDLVGLQVQTEAGEDIGRAVE 124
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ GA +L ++ + L+P + V +++ I + +A
Sbjct: 125 IIETGANDVLVVRKLGQADILVPMVRTVVRSIDIAGGTITVTSLA 169
>gi|256824951|ref|YP_003148911.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
gi|256688344|gb|ACV06146.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
Length = 182
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVL----YSNDNRELRILKMYRKN 57
+ +V +A IG H L GEV + + + P + L I
Sbjct: 11 SIPEGMVRLARIGKPHALKGEVTVQLHTDEPEVRLAVGTAVQTVPAEEGPLTIASRRVHQ 70
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ F + A LR + L A + EL+ + F+ DL +E D QG+ G
Sbjct: 71 GVTLLGFEQVTGRDGAEALRGVVLVAPADE----ELDGEGFYPEDLRGLEVVDGQGEPLG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V ++ A +LE+ T L+PF + V V+L+ ++ + A L
Sbjct: 127 AVKDLHLRPAQDLLEVTTTAGHDVLVPFVEELVPHVDLEAGQVTVTAPAGLLE 179
>gi|322385606|ref|ZP_08059250.1| 16S rRNA processing protein RimM [Streptococcus cristatus ATCC
51100]
gi|321270344|gb|EFX53260.1| 16S rRNA processing protein RimM [Streptococcus cristatus ATCC
51100]
Length = 224
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMY 54
VK+ + I T GL GE+ + S + + N+ L+ ++ ++ I
Sbjct: 51 VKM-NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNKLALFDKKDQFVMDVEIASHR 109
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ I G+ +I+ + RD L +D D LE+ EF+ ++ +E ++
Sbjct: 110 KAKNFDIIKLKGMYHINDIEKFRDFSLKVAEEDLAD--LEDGEFYYHEIIGLEVYEND-V 166
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G + + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 167 LLGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLSIDIEQGRVDVE-IPEGLDDE 223
>gi|121595656|ref|YP_987552.1| 16S rRNA-processing protein RimM [Acidovorax sp. JS42]
gi|120607736|gb|ABM43476.1| 16S rRNA processing protein RimM [Acidovorax sp. JS42]
Length = 209
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRIL 51
V + I G+ G + Y++NP L ++L + L I
Sbjct: 32 PSDAVEVGRITDAWGVKGWFKVLPYSSNPEALLAAKSWLLQPAEKGAKSFFAGTVLLPIR 91
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ + +A G+D+ +A LR +++ R +F +DE++ DL + +R
Sbjct: 92 QARTHSDSVVAWAQGVDDRDAAEALRGARIFVPRANFPVA--GDDEYYWVDLIGLPVVNR 149
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILID 163
+G G V + G + L + E +IPF V +V+L I +D
Sbjct: 150 EGVALGTVRDLLPTGPQTTLVLAYEHEGKPHERMIPFVSAYVDKVDLAGRCITVD 204
>gi|239947509|ref|ZP_04699262.1| 16S rRNA processing protein RimM [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921785|gb|EER21809.1| 16S rRNA processing protein RimM [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 165
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTDPATKILERNLVNESGENIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + D+ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLNHLPILDQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGA I+EI+ + + T L+PF K +
Sbjct: 119 KNILNFGASDIIEIEFSDQTTELLPFNKEFFPVI 152
>gi|187927900|ref|YP_001898387.1| 16S rRNA-processing protein RimM [Ralstonia pickettii 12J]
gi|187724790|gb|ACD25955.1| 16S rRNA processing protein RimM [Ralstonia pickettii 12J]
Length = 184
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLY--------SNDNRELRILKM 53
D LV + +G +G+ G + + + A+ ++ + L S D R +
Sbjct: 12 PDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAAGALATSADWRVFPVGTS 71
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + A LR ++ R DF E ++DEF+ DL + Q
Sbjct: 72 REHSGTVVAGSPAAPDRNVAEALRGYAVWVSRADFP--EPDDDEFYWVDLIGATVVNEQQ 129
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I E L+PF + V V++ +I++D GL+
Sbjct: 130 ETLGTVRGLIDNGAHQILRIVGEGEVERLVPFVEVYVKSVDVAGKRIVVD---WGLD 183
>gi|124024290|ref|YP_001018597.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9303]
gi|123964576|gb|ABM79332.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9303]
Length = 181
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVL-YSNDNRELRILKMYR 55
M + + + + G+ GE+ I+ ++ P R++ + + R + +L +
Sbjct: 6 MNGDEDWLTVGKLVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQ 65
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
R ++ F+G++N ++A L L D L E EF DL +E + +
Sbjct: 66 LPGRSLYVVKFAGVNNRNAAEALVGQNLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAE 123
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G V +LEI+ + L+PF + V EV L + + + P L
Sbjct: 124 GPAIGHVID-LTTAGNDLLEIELLAGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE 180
>gi|296135504|ref|YP_003642746.1| 16S rRNA processing protein RimM [Thiomonas intermedia K12]
gi|295795626|gb|ADG30416.1| 16S rRNA processing protein RimM [Thiomonas intermedia K12]
Length = 180
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVL----YSNDNRELRILKM 53
M D L L+ I G+ G V + A L + L + N+ + + +
Sbjct: 1 MAIPDDLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
R +A G ++ A LR ++ +R DF +E EF+ DL E +G
Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPP--DEGEFYWADLIGCEVRSPEG 118
Query: 114 KYWGQVCGVYNFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G+V G+ A ++L ++ + + LIPF + ++ V+L I+
Sbjct: 119 ADLGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIVSVDLPAKTII 172
>gi|84468326|dbj|BAE71246.1| hypothetical protein [Trifolium pratense]
Length = 669
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 33/196 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYRK 56
K + + + HG G+V + + P L + V+ +E+ + +
Sbjct: 77 KFIDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLRQRVMSEESVKEVELEEGREH 136
Query: 57 NKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQG 113
+ + +I F GI+++ A L L +D ELE+ EF+ DL M F G
Sbjct: 137 SGKNCWILKFRGIESVEEAKMLIGATLLVTEEDKP--ELEDGEFYAHDLNGMRVFMKENG 194
Query: 114 KYWGQVCGVYNFGAGSILEIK-------------------NTMEKTFLIPFTKFAVLEVN 154
K G V V+N GA +L+I + + L+PF + V +V+
Sbjct: 195 KLLGTVINVFNTGANDLLQISLDSSFDVLDKNGQPKPEEIDASGQLVLLPFVEAIVSDVD 254
Query: 155 LQENKILIDPIAAGLN 170
+ + ++ I P L
Sbjct: 255 MNKREMHITPPKGLLE 270
>gi|270290353|ref|ZP_06196578.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
gi|270281134|gb|EFA26967.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
Length = 192
Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---------SNDNRELRILKMYRK 56
+A I T GL GE+ + +Y + P + + + + + +
Sbjct: 23 NYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPF 82
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ +G+D+I+ + + + L +EL + EF+ + + G+
Sbjct: 83 KGMWLIQLAGLDSINEVEKFKGMMLKIAEDQL--QELADGEFYQHKIIGLTVI-EDGQTL 139
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + ++G + ++ +K L+P+ VL+V+L ++ + + + GL+
Sbjct: 140 GKVKEILSYGPNDVWVVERPGKKDLLLPYLNDVVLKVDLDKSIVEVA-VPEGLD 192
>gi|315655020|ref|ZP_07907924.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 51333]
gi|315490676|gb|EFU80297.1| 16S rRNA processing protein [Mobiluncus curtisii ATCC 51333]
Length = 192
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 25/186 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYS-NDNRELRILKMYRKNKRFIAT 63
+ + IG G+ GEV + ++P +L + N L + + K F+ +
Sbjct: 3 LTVGIIGRASGVRGEVRVALRTDDPRSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELE---------------------EDEFFNTD 102
F I + + A L KLY + +D F+ +
Sbjct: 63 FQEIPDRNGAETLSGTKLYIETDAPPLCTDPGDTPDTTAEPEATDYSENTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAINLAGETLGTISDLLLAPAQDLLEVTTAEGEKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DPIAAG 168
DP
Sbjct: 183 DPPGGL 188
>gi|229821021|ref|YP_002882547.1| 16S rRNA processing protein RimM [Beutenbergia cavernae DSM 12333]
gi|229566934|gb|ACQ80785.1| 16S rRNA processing protein RimM [Beutenbergia cavernae DSM 12333]
Length = 182
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN---RELRILKMYRKNK 58
D V++A +G GL GEV + ++ L D L I ++ R
Sbjct: 4 TDQDDDVVLARLGAALGLRGEVRLTVRTDDENRLAPGTKVRTDPPAAGPLTIARLRRTGA 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ F+ I + +A LR ++L A+ +++D ++ +L +E G G+
Sbjct: 64 GYVIAFAEIADRTAAEALRGVELVAE------PRVDDDAWYPRELVGLEAVTPDGHVLGE 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V V + A +L + L+PF V V++ ++++DP +
Sbjct: 118 VVAVEHPPAHDVLVVVEPSGAHALVPFVTALVPSVDVAAGRVVVDPPGGLFID 170
>gi|221213541|ref|ZP_03586515.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD1]
gi|221166330|gb|EED98802.1| 16S rRNA processing protein RimM [Burkholderia multivorans CGD1]
Length = 223
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ + R+ L R RI++
Sbjct: 46 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTH 105
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ + Q
Sbjct: 106 GDTVVAQPAGVGDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLDVVNEQSATL 163
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + GA SI+ ++ LIPF V V+ +I++D
Sbjct: 164 GKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQTARRIVVD 218
>gi|227878847|ref|ZP_03996754.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
gi|227861595|gb|EEJ69207.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
Length = 183
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 8/175 (4%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNK 58
K++ +A I T HGLNGEV + + P D + ++ L + K +
Sbjct: 12 KME-YYDVARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQ 70
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWG 117
++ F+ I +I A +L+ L D EL E ++ D+ + + D + GK G
Sbjct: 71 FWLVQFAEITDIDQAEKLKGKILVVSEAD--RGELPEGVYYYKDIFDCDVIDEESGKRLG 128
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + + GA I + K + IP V +V++ K+ ++ + +
Sbjct: 129 KITDIESPGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED 183
>gi|323466315|gb|ADX70002.1| Ribosome maturation factor rimM [Lactobacillus helveticus H10]
Length = 171
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTH LNGEV ++ + P + L S+ NR L + K + ++ F
Sbjct: 6 VARILTTHRLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQFK 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +LR L +D EL + ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLRGQILVVSEED--RGELPDGVYYYKDIFDCDVIDEETGKRIGKIVDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I ++ K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVREDDVKEYWIPNIADVVKKVDVAAKKVYVELMEGLRDED 171
>gi|254447247|ref|ZP_05060714.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
gi|198263386|gb|EDY87664.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
Length = 170
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--------SNDNRELRILKMYRKN 57
+++ +G HG+ G + + SY + +L Y + + + +
Sbjct: 4 DTLIVGKLGGPHGVRGWIKVLSYTDPRENLFEYTPWLIERPSDRGAQWQGYDVESARPQG 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K ++ ID+ +A +L ++ + ELEE E++ +L +E QG+ G
Sbjct: 64 KGWVVKLKDIDDRDAALQLMHSRVSVREDQLP--ELEEGEYYWRELIGLEVVTSQGQVLG 121
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFT 146
+V + GA +L ++ E+ LIP+
Sbjct: 122 KVSQLLETGANDVLVVR--GERERLIPYI 148
>gi|296117624|ref|ZP_06836208.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
gi|295969355|gb|EFG82596.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
Length = 171
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 1 MVK-LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKMY 54
M+K ++ +L+ + +HG+ GEV +D ++P + N + E I +
Sbjct: 1 MLKNME--LLIGRVIKSHGIKGEVSVDVTTDSPEERFYPGAVLNGKQGAKDLEFTISTVR 58
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
R + TF I + A LR ++ +A + D++ F++ +LE + G
Sbjct: 59 AHKGRLLLTFEEITDRTQADSLRGVQFFAPPLEDDDDDDG---FYDHELEGLNLVL-DGN 114
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V G+ + S+LE K K LIPF + V E++L E I P L
Sbjct: 115 VIGEVTGISHGPVQSLLEAKLHNGKEALIPFVEEIVPEIDLDEGTCTITPPEGLLE 170
>gi|220931576|ref|YP_002508484.1| 16S rRNA processing protein RimM [Halothermothrix orenii H 168]
gi|254797752|sp|B8CW20|RIMM_HALOH RecName: Full=Ribosome maturation factor rimM
gi|219992886|gb|ACL69489.1| 16S rRNA processing protein RimM [Halothermothrix orenii H 168]
Length = 170
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRF 60
DK++ + + T G GEV + + P +++ N E R+ ++ K
Sbjct: 3 DKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFV 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GID+I +A +D + R++ D L E +F +L E + +G + G+V
Sbjct: 63 IIKFEGIDDIGAALAYKDYFIKIPREETLD--LPEGHYFIFELLGFEVYTDEGIFLGKVV 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G I+++K +K +++P + V+ +N E KI+I PI L+
Sbjct: 121 DIITTGGTDIIKVKG-DKKDYMVPAAREIVVNINPDEEKIIIKPIPGLLD 169
>gi|261377990|ref|ZP_05982563.1| 16S rRNA processing protein RimM [Neisseria cinerea ATCC 14685]
gi|269145861|gb|EEZ72279.1| 16S rRNA processing protein RimM [Neisseria cinerea ATCC 14685]
Length = 169
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL-RILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWQLVKDGKTVVVTLEEGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E E E++ DL M ++
Sbjct: 61 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EGEYYWADLVGMTVTNKDNTIL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L + + LIPF V V+ I+ D GL+
Sbjct: 119 GKVSNLMETGANDVLVVNGKYGQ-ILIPFVSQYVETVDTGSKTIIAD---WGLD 168
>gi|330815921|ref|YP_004359626.1| 16S rRNA processing protein RimM [Burkholderia gladioli BSR3]
gi|327368314|gb|AEA59670.1| 16S rRNA processing protein RimM [Burkholderia gladioli BSR3]
Length = 237
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA------NNPIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + I +GL G V I +A + + + R + I +
Sbjct: 60 PDDAVEVGAIVDAYGLKGWVKIAPHAGAGRGGDALLKARTWWFEKGAERLAVGITQSKFH 119
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + A LR ++Y +R+DF L+ DEF+ DL ++ + G
Sbjct: 120 SDTVVAHLAGLADRDQALALRGYRVYVRREDFPA--LDADEFYWVDLIGLDVVNEAGVEL 177
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + + G SI+ + + LIPF V V+ +I++D
Sbjct: 178 GRVGDMIDNGVHSIMRVDYPASGKDGKPVRGERLIPFVGVYVKTVDQAAKRIVVD 232
>gi|209573738|sp|B0UCL3|RIMM_METS4 RecName: Full=Ribosome maturation factor rimM
Length = 209
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR---FI 61
+LV++ G HGL GEV + SY P+ + Y L ++D R + + + +
Sbjct: 31 RLVVLGEFGRAHGLQGEVRLKSYTAEPMAIGGYGPLLASDGRVVELTALRPAAGTPDILV 90
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A +G+ +A L L L R E +EDEFF DL + D G G +
Sbjct: 91 ARVAGVAGRSAAEGLNRLTLSVPRDRLGAPE-DEDEFFTADLVGLAAVDAAGTRLGTIRA 149
Query: 122 VYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V N+G G +LEI+ + L+PFT+ V +V + ++ I P
Sbjct: 150 VPNYGGGDLLEIEPEGGGRPALLPFTRLFVPKVEIAAGRVTIAPPEDL 197
>gi|310286860|ref|YP_003938118.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
gi|309250796|gb|ADO52544.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
Length = 204
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + + ++E + R+I
Sbjct: 18 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFKNRWIV 77
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
F GID+ ++ ++LY + D ++ LEED ++ DL +E + G+
Sbjct: 78 KFEGIDDRDASEAANGIELYGEADD-PEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQ 136
Query: 115 YWGQVCGVYNFGAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V V + A ++L+I+ E T L+PF V +++L+E + ID
Sbjct: 137 VIGKVVDVLDS-AQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTID 195
Query: 164 PIAAGL 169
P +
Sbjct: 196 PPGGLI 201
>gi|228477093|ref|ZP_04061731.1| 16S rRNA processing protein RimM [Streptococcus salivarius SK126]
gi|228251112|gb|EEK10283.1| 16S rRNA processing protein RimM [Streptococcus salivarius SK126]
Length = 172
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + L+ + + ++ I + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNYIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGD-TLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|254468713|ref|ZP_05082119.1| 16S rRNA processing protein RimM [beta proteobacterium KB13]
gi|207087523|gb|EDZ64806.1| 16S rRNA processing protein RimM [beta proteobacterium KB13]
Length = 165
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNK 58
++ LV++ I + +G+ G V I + + +Y D + I ++ + +
Sbjct: 1 MENLVIIGKIISAYGIKGWVKIRPFTETAKNFIQYKTQFLSRNQKDWNRVEIKEIKIQGQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
IA G+ + + + L R +L EDEF+ DL ++ D + G+
Sbjct: 61 DVIADI-GLTDRDQSISHKGYFLAIARDQLP--QLPEDEFYWDDLIGLKVIDVDREDLGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ GA +L + + ++ LIP+ + +V+ I +D
Sbjct: 118 VVGLIETGANDVLVV--SGDRERLIPYIPQVIKKVDTHNQLIEVD 160
>gi|68171521|ref|ZP_00544901.1| RimM protein:PRC-barrel [Ehrlichia chaffeensis str. Sapulpa]
gi|88658505|ref|YP_506837.1| 16S rRNA processing protein RimM [Ehrlichia chaffeensis str.
Arkansas]
gi|109893015|sp|Q2GI96|RIMM_EHRCR RecName: Full=Ribosome maturation factor rimM
gi|67999049|gb|EAM85720.1| RimM protein:PRC-barrel [Ehrlichia chaffeensis str. Sapulpa]
gi|88599962|gb|ABD45431.1| 16S rRNA processing protein RimM [Ehrlichia chaffeensis str.
Arkansas]
Length = 175
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 4 LD-KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL-KMYRKNKRFI 61
++ L+ + I ++HG++G V I ++ NP D Y ++ + I
Sbjct: 1 MENDLICLGVITSSHGISGHVKIKTFTENPEDFTSYGTLTDGINTYEVEIISIISQNIII 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A GI + A LR+ K + ++ + +DEF+ +DL + +G +
Sbjct: 61 AQIKGIVSRTDADLLRNKKFFVEKNKLPNPT-NDDEFYYSDLIGLNVVLENNNVYGNIKK 119
Query: 122 VYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
++NFG+ I+EI+ + +K+ ++PFTK VN++E I+I
Sbjct: 120 IHNFGSCDIIEIRLSNSKKSTMLPFTKDIFPYVNVKEKYIIITLPE 165
>gi|227504775|ref|ZP_03934824.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
gi|227198625|gb|EEI78673.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
Length = 174
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 2 VKLDKL-VLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR---ELRILKMYR 55
+K++++ +++ + +HG+ GE+ +++ + P VL+ + EL I +
Sbjct: 4 IKVEQMELMIGRVIKSHGIKGELSVEATTDEPEIRFAVGEVLHGRQGKKEHELTIKAVRV 63
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + TF + + +A LR + +A D D++ F++ +LE + G
Sbjct: 64 HKGRLLITFEEVKDRTAADSLRGTQFFAPPLDDPDDDG----FYDHELEGLRVI-HDGND 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V G+ + S+LE++ K LIPF + V EV+L E I P L+
Sbjct: 119 IGEVTGLTHGPTQSLLEVRLESGKEALIPFVEEIVPEVDLDEGTCTITPPEGLLD 173
>gi|222152905|ref|YP_002562082.1| 16S rRNA-processing protein RimM [Streptococcus uberis 0140J]
gi|254797765|sp|B9DRW5|RIMM_STRU0 RecName: Full=Ribosome maturation factor rimM
gi|222113718|emb|CAR41678.1| 16S rRNA processing protein [Streptococcus uberis 0140J]
Length = 172
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + R L+ + E+ I R+
Sbjct: 2 EFFNVGKIVNTQGLQGEMRVLSVSDFADERYRKGSQLALFDEKDHFYSEVEIASHRRQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+++I+ + + L +Q D L+E EF+ + +E ++ Y G
Sbjct: 62 FDIIKFKGMNHINDIEKFKGFTLKVSQQHLSD--LDEGEFYYHQIIGLEVYEND-VYIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K +K L+PF VL V+++ N++ + I GL++
Sbjct: 119 IKEILQPGANDVWVVKRQGKKDLLLPFIPPVVLNVDVEANRVDVA-IMEGLDDE 171
>gi|116492615|ref|YP_804350.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
gi|122265921|sp|Q03FW4|RIMM_PEDPA RecName: Full=Ribosome maturation factor rimM
gi|116102765|gb|ABJ67908.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
Length = 171
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN---- 57
+A I T GL GE+ + SY + P + + ++ + E+ + + KN
Sbjct: 2 NYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKEY 61
Query: 58 -KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
FI T G+++I+ + + + L + +D LEE EF+ + ++ + +
Sbjct: 62 KGSFIVTLEGMNSINDVEKFKGMILKVEEDQLQD--LEEGEFYLHQIIGLDVIEND-QKI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G + V ++G + +K + L+P+ K +L V+L++ + +
Sbjct: 119 GTIKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQGAVQVSVPEGL 170
>gi|261856591|ref|YP_003263874.1| 16S rRNA processing protein RimM [Halothiobacillus neapolitanus c2]
gi|261837060|gb|ACX96827.1| 16S rRNA processing protein RimM [Halothiobacillus neapolitanus c2]
Length = 178
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--------SNDNRELRILKMYRKNKR 59
V++ IG G+ G +I +Y + +Y + + + R+ K +++
Sbjct: 11 VVIGVIGRAFGVKGWSWITTYTRPADGITQYRQWFVRSPADGGDAGKWYRVTKFAAQSQG 70
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A GID+ A L ++ ++ E E++ DL G+ +G V
Sbjct: 71 IVAKLEGIDDRTQAEALTGAEILVPTDALP--KVAEGEYYWRDLTGCRVQHVSGQDFGVV 128
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVL-EVNLQENKILID 163
+ GA +L + ++ LIPF VL +N+ + I++D
Sbjct: 129 QELLETGANDVLVVGGEGQRERLIPFIPDDVLVSINIDQRLIVVD 173
>gi|320539048|ref|ZP_08038722.1| 16S rRNA processing protein [Serratia symbiotica str. Tucson]
gi|320030888|gb|EFW12893.1| 16S rRNA processing protein [Serratia symbiotica str. Tucson]
Length = 183
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 13/175 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKR 59
+ +++ +G+ +G+ G + + S N + Y + + + + ++
Sbjct: 10 PKQPIVLGKMGSAYGIRGWLKVFSSTENAESIFDYQPWLIQQVGQWQFVELEDWKHHSQD 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQ 118
I GID+ +AS L ++ + LE D+++ DL + G G+
Sbjct: 70 LIIKIKGIDDRDAASLLTHCEIIVDSEQLP--PLEGDDYYWKDLIGCQVVTTTTGYELGK 127
Query: 119 VCGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
V + + ++ +K ++ K L+PF V +V+L I D
Sbjct: 128 VIDMMETSSNDVMVVKANLKDAFGMKERLVPFLHGQVVKKVDLTARVIEADWDPG 182
>gi|315657117|ref|ZP_07910001.1| 16S rRNA processing protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492220|gb|EFU81827.1| 16S rRNA processing protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 192
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 25/186 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYS-NDNRELRILKMYRKNKRFIAT 63
+ + IG G+ GEV + ++P +L + N L + + K F+ +
Sbjct: 3 LTVGIIGRASGVRGEVRVALRTDDPRSRFAPGTVLLTNRNSPAALTVDQARMSGKHFVVS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELE---------------------EDEFFNTD 102
F I + + A L KLY + +D F+ +
Sbjct: 63 FQEIPDRNGAETLSGTKLYIETDAPPSCTDPGDTPDTTAEPEATDYSENTEGDDGFYRHE 122
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
L + + G+ G + + A +LE+ + L+PF V +V+L + +
Sbjct: 123 LVGLRAINLAGETLGTISDLLLAPAQDLLEVTTAEREKILVPFVYEIVPDVDLDNGLVTM 182
Query: 163 DPIAAG 168
DP
Sbjct: 183 DPPGGL 188
>gi|311063761|ref|YP_003970486.1| 16S rrNA processing protein [Bifidobacterium bifidum PRL2010]
gi|310866080|gb|ADP35449.1| RimM 16S rRNA processing protein [Bifidobacterium bifidum PRL2010]
Length = 200
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + + ++E + R+I
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFKNRWIV 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
F GID+ ++ ++LY + D ++ LEED ++ DL +E + G+
Sbjct: 74 KFEGIDDRDASEAANGIELYGEADD-PEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQ 132
Query: 115 YWGQVCGVYNFGAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V V + A ++L+I+ E T L+PF V +++L+E + ID
Sbjct: 133 VIGKVVDVLDS-AQTLLKIRLVSPVRDSVTGEVTESTALVPFVDELVPDIDLEEGYLTID 191
Query: 164 PIAAGL 169
P +
Sbjct: 192 PPGGLI 197
>gi|171769889|sp|A2CCX2|RIMM_PROM3 RecName: Full=Ribosome maturation factor rimM
Length = 176
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVL-YSNDNRELRILKMYR 55
M + + + + G+ GE+ I+ ++ P R++ + + R + +L +
Sbjct: 1 MNGDEDWLTVGKLVAAQGMQGELRINPSSDFPERFTLPGQRWLKERNGEPRPIELLTGRQ 60
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
R ++ F+G++N ++A L L D L E EF DL +E + +
Sbjct: 61 LPGRSLYVVKFAGVNNRNAAEALVGQNLLVPSSDRPS--LAEGEFHLLDLVGLEARLQAE 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G V +LEI+ + L+PF + V EV L + + + P L
Sbjct: 119 GPAIGHVID-LTTAGNDLLEIELLAGRRVLVPFVEAIVPEVQLNQGWLRLTPPPGLLE 175
>gi|15676496|ref|NP_273635.1| 16S rRNA-processing protein [Neisseria meningitidis MC58]
gi|304388171|ref|ZP_07370294.1| 16S rRNA processing protein RimM [Neisseria meningitidis ATCC
13091]
gi|14423894|sp|Q9K0K3|RIMM_NEIMB RecName: Full=Ribosome maturation factor rimM
gi|7225821|gb|AAF41019.1| 16S rRNA processing protein RimM [Neisseria meningitidis MC58]
gi|304337847|gb|EFM03993.1| 16S rRNA processing protein RimM [Neisseria meningitidis ATCC
13091]
gi|325139856|gb|EGC62388.1| 16S rRNA processing protein RimM [Neisseria meningitidis CU385]
gi|325144022|gb|EGC66332.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240013]
Length = 169
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ TDL M ++
Sbjct: 61 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|46579250|ref|YP_010058.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603187|ref|YP_967587.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|59798766|sp|Q72DU2|RIMM_DESVH RecName: Full=Ribosome maturation factor rimM
gi|166226438|sp|A1VFE4|RIMM_DESVV RecName: Full=Ribosome maturation factor rimM
gi|46448664|gb|AAS95317.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563416|gb|ABM29160.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|311233079|gb|ADP85933.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris RCH1]
Length = 176
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSND---NRELRILKMYRKNK 58
++ + + + + HGL GEV +D YA++P L V R +++ M
Sbjct: 1 MEASRFIEIGLLTRPHGLKGEVCVDYYADSPFLLEGTVYLKAGRAAPRPVKVQSMRMHKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWG 117
R + F G+++ +A LR + EL+EDE + +LE + D G++ G
Sbjct: 61 RPLVIFEGVNDRTAAELLRGHVMLVPEDTLP--ELDEDEVYLFELEGISVVIDESGEHLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + I I+ K L P VL+++L I P L+
Sbjct: 119 VIERIDTDAYQEIWVIRTPQGKEVLFPAAAPFVLDIDLDSRTARIAPPPGLLD 171
>gi|227513454|ref|ZP_03943503.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227524597|ref|ZP_03954646.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
gi|227083327|gb|EEI18639.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227088272|gb|EEI23584.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
Length = 174
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 9/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRE-----LRILKMYRKNK 58
+ I T GL GEV + + + P + +++ + L I + +
Sbjct: 2 DYYNVGKIVNTQGLKGEVRVIAITDFPEKRFKKGNTIFAQTEKSKALISLEIDGVRKHKG 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F G I+ L+ L D++L+ E++ + ++ ++ GQ
Sbjct: 62 FVLLHFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVYEGD-NLVGQ 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + + GA + ++ +K L+P + EV+L+ +KI ++ I GL++
Sbjct: 121 VKEILSPGANDVWVVQRKAKKDLLLPKIDSVIKEVDLKNHKINVE-IPEGLDDA 173
>gi|322516398|ref|ZP_08069323.1| 16S rRNA processing protein RimM [Streptococcus vestibularis ATCC
49124]
gi|322125131|gb|EFX96524.1| 16S rRNA processing protein RimM [Streptococcus vestibularis ATCC
49124]
Length = 172
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + L+ + + ++ I + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNHIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + +L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCRLKIAEENLTD--LDDGEFYYHEIIGLDVYEGD-SLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|332670017|ref|YP_004453025.1| 16S rRNA processing protein RimM [Cellulomonas fimi ATCC 484]
gi|332339055|gb|AEE45638.1| 16S rRNA processing protein RimM [Cellulomonas fimi ATCC 484]
Length = 184
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 6/173 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKNKRFIA 62
L+ +A IG HGL GEV +D + P + + L +++ + R+
Sbjct: 2 LLNVARIGRAHGLRGEVALDLRTDAPQERLAVGAVLQTEPAGSGPLTVMRTRVQQGRWYV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF+ + +A L L + + D + + ++ +L + G+ G+V G+
Sbjct: 62 TFAEASDRTAAEALTGTTLVVEVDEDADADDDA--WYPHELAGLRAEHVDGRVLGEVVGL 119
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ A +L ++ L+PF + V V+++ ++++DP L +
Sbjct: 120 EHAPAHDVLVVREPDGTRTLVPFVRAIVPTVDVRGGRVVLDPPGGLLASDAEN 172
>gi|325267105|ref|ZP_08133774.1| 16S rRNA processing protein RimM [Kingella denitrificans ATCC
33394]
gi|324981458|gb|EGC17101.1| 16S rRNA processing protein RimM [Kingella denitrificans ATCC
33394]
Length = 169
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDN-RELRILKMYRK 56
M V M I G+ G V + + YA++ +D + L N R I
Sbjct: 1 MSGSQNWVAMGYIKGAFGVKGWVKVHAGTEYADSLLDYPEWRLTKGGNVRVAEIEASKVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
F+ I++ A+ LR + R++F E EEDE++ DL M +R+
Sbjct: 61 GDELQVKFAHINDRDEAALLRGYTIEIARENFA--ETEEDEYYWADLVGMSVVNREQAVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + GA +L ++ LIPF + V+ + KI D
Sbjct: 119 GEVVKLMETGAHDVLVVRGEYG-EKLIPFVSHYIDGVDAENRKITAD 164
>gi|126665076|ref|ZP_01736059.1| 16S rRNA processing protein RimM [Marinobacter sp. ELB17]
gi|126630446|gb|EBA01061.1| 16S rRNA processing protein RimM [Marinobacter sp. ELB17]
Length = 175
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR-ELRILKMYRK 56
M + + ++ I G+ G + + S+ + + + L + R ++ + R+
Sbjct: 1 MAESSQETVIGRITAVFGIKGWLKVYSFTDPRDGVLHYRNWTLVQDGKRIPAKLEEGRRQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ + G+D+ A ++ + EL + +++ LE +E F + +
Sbjct: 61 GQGIVIRLKGVDDRDVAQRYCGADIHVPTEQLA--ELPKGDYYWYQLEGLEVFTVEDECL 118
Query: 117 GQVCGVYNFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G + + GA +L ++ + ++ LIP+ V++V+L ++++D
Sbjct: 119 GTMHHMLETGANDVLVVQASPASIDQRERLIPYLPDEIVMQVDLANKRMVVD 170
>gi|227488606|ref|ZP_03918922.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091500|gb|EEI26812.1| 16S rRNA-processing protein [Corynebacterium glucuronolyticum ATCC
51867]
Length = 172
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 13/177 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------SNDNRELRILKMY 54
M ++ + + THG+ GEV +D ++ ++L I M
Sbjct: 1 MATME--YRIGRVVKTHGIKGEVVVDPTTDDLDQRFYVGAVLTGRAGGGKEQQLTIQSMR 58
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
R + F I + + LR ++ +A + EED +++ +LE + +G
Sbjct: 59 PHQGRLLVKFEEIPDRTAGESLRGMQFFAPPLEHDP---EEDGYYDHELEGLAVI-HEGT 114
Query: 115 YWGQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + + A ++L + + E+ LIP V E+NL E I P L+
Sbjct: 115 RVGEVTDITHGPAATLLTVTMDEDERDVLIPLVDAIVPEINLGEKTATITPPDGLLD 171
>gi|158313002|ref|YP_001505510.1| 16S rRNA-processing protein RimM [Frankia sp. EAN1pec]
gi|158108407|gb|ABW10604.1| 16S rRNA processing protein RimM [Frankia sp. EAN1pec]
Length = 225
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 49/216 (22%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRE--------- 47
+ + V++ +G HG+ G+V +D + P L R V +R
Sbjct: 8 MGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAAD 67
Query: 48 ---------------------------LRILKMYRKNKRFIATFSGIDNIHSASELRDLK 80
L ++ + R + F G+ + +A LR
Sbjct: 68 AVGTAAGPGSAGDSGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSF 127
Query: 81 LYAKRQDFKD-----EELEEDE-FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIK 134
L + +E ++ E +++ DL + G G+V V + G IL I
Sbjct: 128 LTIDSDECGPAVDPDDEDDDGELWWDRDLVGLHARTPAGDVLGEVVDVIHSPGGEILAIG 187
Query: 135 NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+L+PF + V V+ I++DP L+
Sbjct: 188 RPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLD 223
>gi|329121414|ref|ZP_08250039.1| 16S rRNA processing protein RimM [Dialister micraerophilus DSM
19965]
gi|327469704|gb|EGF15171.1| 16S rRNA processing protein RimM [Dialister micraerophilus DSM
19965]
Length = 168
Score = 153 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K D++ ++ I HG+ G++ + + P + +++ +I
Sbjct: 4 MKTDEMTVVGRIVAPHGVRGDLRVLPEIDKPEIFKNIKHIYFGEKSYKVISSRPHKNIYI 63
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + +++ + L + + + E E++ +L +ME + ++G + G +
Sbjct: 64 MKVEGVTDRNTSESMVGLSASLSKDEIPPCK--EGEYYCFELLDMEVYTQEGTFVGTLKE 121
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ GA + + ++ +P + +V+++ K+ ++
Sbjct: 122 IIETGANDVYTVIGPDKEEIYLPAIPSCIKKVDVESRKMTVELPEW 167
>gi|313139561|ref|ZP_07801754.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132071|gb|EFR49688.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 200
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + + ++E + R+I
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFKNRWIV 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
F GID+ ++ ++LY + D ++ LEED ++ DL +E + G+
Sbjct: 74 KFEGIDDRDASEAANGIELYGEADD-PEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQ 132
Query: 115 YWGQVCGVYNFGAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V V + A ++L+I+ E T L+PF V +++L+E + ID
Sbjct: 133 VIGKVVDVLDS-AQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTID 191
Query: 164 PIAAGL 169
P +
Sbjct: 192 PPGGLI 197
>gi|312863918|ref|ZP_07724156.1| 16S rRNA processing protein RimM [Streptococcus vestibularis F0396]
gi|311101454|gb|EFQ59659.1| 16S rRNA processing protein RimM [Streptococcus vestibularis F0396]
Length = 172
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + L+ + + ++ I + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSVLALFDDKDNHIMDVEIASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGCSLKIAEENLTD--LDDGEFYYHEIIGLDVYEGD-SLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|218248799|ref|YP_002374170.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8801]
gi|226694911|sp|B7K5W1|RIMM_CYAP8 RecName: Full=Ribosome maturation factor rimM
gi|218169277|gb|ACK68014.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8801]
Length = 186
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDN---RELRILKMY 54
M + + + I GL GE+ + S ++ P + L S D +E+ +++
Sbjct: 1 MDNSESWLEIGRIVAAQGLKGELKVMSSSDFPERFEKPGTRWLQSPDRLSIQEVELVRGR 60
Query: 55 --RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
++ + I + A LRD L D +L E E+ +DL + + +Q
Sbjct: 61 YVPGKNLYVIKLAEIADRTQAETLRDYTLLVPSSDRP--QLNEGEYHVSDLINLTVYHQQ 118
Query: 113 -GKYWGQVCGVYNFGAGSILEI--------KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ G V + + G +LE+ +NT K LIPF V V+L +I I+
Sbjct: 119 TGEEIGVVTDMLSAG-NDLLEVQLNTLNSSENTSSKKVLIPFVYEIVPVVDLVNKRIEIN 177
Query: 164 PIAAGLN 170
P L
Sbjct: 178 PPVGLLE 184
>gi|296394373|ref|YP_003659257.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
gi|296181520|gb|ADG98426.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
Length = 171
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPID--------LNRYVLYSNDNRELRILKMYRKNKRFI 61
+ I +HGL GEV ++ ++P L R ++ L +L +
Sbjct: 2 VGRIAKSHGLTGEVAVEIRTDDPERRFAPGSTLLLRMPKAKQADKALHVLSAREHASHLL 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVC 120
TF+ + + +A LR L + +D E + DEF++ +L + D G G+V
Sbjct: 62 VTFAEVMDRAAADSLRGALLVVRTEDLPPSE-DPDEFYDHELVGLRIVDRAGGGELGEVA 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G L + + L+PF V+EV+L E ++ L+
Sbjct: 121 DVVHSAGGDWLVARVEGGREVLVPFVAAIVVEVSLAEKTAWVELPEGLLD 170
>gi|319761916|ref|YP_004125853.1| 16S rRNA processing protein rimm [Alicycliphilus denitrificans BC]
gi|330826220|ref|YP_004389523.1| 16S rRNA processing protein RimM [Alicycliphilus denitrificans
K601]
gi|317116477|gb|ADU98965.1| 16S rRNA processing protein RimM [Alicycliphilus denitrificans BC]
gi|329311592|gb|AEB86007.1| 16S rRNA processing protein RimM [Alicycliphilus denitrificans
K601]
Length = 190
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRIL 51
V + I G+ G + Y+++P L + L L I
Sbjct: 13 PSDAVEVGRIADAWGVKGWFKVLPYSSDPEALFASRSWFLQPAQKGGKSFFSGTVLLPIR 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ + +A G+D+ +A LR +++ R+ F +DE++ DL + +R
Sbjct: 73 QARTHSDAVVAWAHGVDDRDAAEALRGARIFVPRESFPATS--DDEYYWVDLIGLAVVNR 130
Query: 112 QGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+G G V + G + L + + +IPF V +V+L +I +D
Sbjct: 131 EGIALGTVSELLPTGPQTTLVLSYEHEGKPRERMIPFVSAYVDKVDLAGRRITVD 185
>gi|67458947|ref|YP_246571.1| 16S rRNA-processing protein [Rickettsia felis URRWXCal2]
gi|75536615|sp|Q4UM17|RIMM_RICFE RecName: Full=Ribosome maturation factor rimM
gi|67004480|gb|AAY61406.1| 16S rRNA processing protein RimM [Rickettsia felis URRWXCal2]
Length = 165
Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L + ++ I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILERNLVNESGEDIHIKLISQNTKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ KL+ R +LEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKLFCLRASLP--KLEEDEFYIADLNHLPVLNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + T L+PF K + +
Sbjct: 119 KNILNFGAGDIIEIEFLDQTTELLPFNKEFIPLI 152
>gi|24379321|ref|NP_721276.1| 16S rRNA-processing protein RimM [Streptococcus mutans UA159]
gi|48474854|sp|Q8DUN7|RIMM_STRMU RecName: Full=Ribosome maturation factor rimM
gi|24377244|gb|AAN58582.1|AE014928_3 putative 16S rRNA processing protein [Streptococcus mutans UA159]
Length = 172
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
K + I T GL GEV + S + + + L+ + + I +
Sbjct: 2 KYFNVGKIVNTQGLRGEVRVLSVTDFADERFKKGSQLALFDKKDHFAMTVEIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L D LE+ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIVKFKGLYHINDVEKYRDFTLKVTEDHLAD--LEDGEFYYHEIIGLDVYEND-ILIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K +K L+P+ +L+V++ +I + + +
Sbjct: 119 VKEILQPGANDVWVVKRKGKKDLLLPYIPSVILKVDVPNGRIDVTVLEGLDDEN 172
>gi|188585997|ref|YP_001917542.1| 16S rRNA processing protein RimM [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229564324|sp|B2A2N9|RIMM_NATTJ RecName: Full=Ribosome maturation factor rimM
gi|179350684|gb|ACB84954.1| 16S rRNA processing protein RimM [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 179
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSN----DNRELRILKMYRKNK 58
LV + I THG+ GE+ + S + +L+R L + D I +
Sbjct: 6 DLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESSFTHKN 65
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I FS D+I+ D + R++ +LEEDE++ + + + ++ G
Sbjct: 66 MEIVKFSEWDDINQVEGFHDWYIKIPREERP--QLEEDEYYFDQITGLSVVTVEDEFLGT 123
Query: 119 VCGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V +Y G+ + E+ K +K LIP V +++L E +++D L+
Sbjct: 124 VTNIYQTGSNDVYEVSKEQDDKPILIPALYEVVKKIDLDEQIMIVDLPEGLLDEEE 179
>gi|58337564|ref|YP_194149.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus NCFM]
gi|67461233|sp|Q5FJK6|RIMM_LACAC RecName: Full=Ribosome maturation factor rimM
gi|58254881|gb|AAV43118.1| 16S rRNA processing protein [Lactobacillus acidophilus NCFM]
Length = 171
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I TTHGL+GEV ++ + P D + L + +R L I K + ++ F
Sbjct: 6 VARILTTHGLHGEVKVNVITDFPEDRFAEGMQLELKDDIDRVLTIKKSRPFKQFWLLQFD 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +LR L +D EL + ++ D+ + D + GK G++ + +
Sbjct: 66 EITDIDEAEKLRGKILVISEKD--RGELPDGVYYYKDIFDCGVIDNETGKRLGKITDIQS 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V ++++ + K+ ++ + +
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIADVVKKIDIADKKVYVELMEGLRDED 171
>gi|309775672|ref|ZP_07670671.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
gi|308916578|gb|EFP62319.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
Length = 167
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 8/167 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
+ + + THGL GEV I + P ++ +L + + + I
Sbjct: 4 INIGMLVNTHGLRGEVKIKVLTDFPQLRFHKGATVHLQLPTGELDLCVAGVRESKGQLIV 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G D+I+ + L + + +EL+ E + +L++ + G G V +
Sbjct: 64 KFEGYDDINQVEAWKGSMLTIREDEL--QELDAYEAYYYELQDAAVYTMDGTLLGTVTEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA ++L +K K LIPF + V E + + + ++ + L
Sbjct: 122 IETGANAVLRVKTAD-KDILIPFVRAFVKEFDRKAKVMKVELLEGLL 167
>gi|325206560|gb|ADZ02013.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M04-240196]
Length = 169
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ TDL M ++
Sbjct: 61 NSELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|222054587|ref|YP_002536949.1| 16S rRNA processing protein RimM [Geobacter sp. FRC-32]
gi|254797750|sp|B9M593|RIMM_GEOSF RecName: Full=Ribosome maturation factor rimM
gi|221563876|gb|ACM19848.1| 16S rRNA processing protein RimM [Geobacter sp. FRC-32]
Length = 174
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 7/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNR--ELRILKMYR 55
M ++ L+ + THG+ G++ I S++ ++ + L ++ L + +
Sbjct: 1 MSSGNQTFLIGKVSATHGVRGQLRITSFSGDMDSFMALRSVMIKKPGGGMETLAVAEAKA 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K+ I + G +I+ L ++Y R L + E++ DL ++ G
Sbjct: 61 HGKKIILSLKGYTDINDVLHLVGREIYVLRDQLPL--LSDGEYYWCDLLGLQVMTEDGDI 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + + G+ + + +K LIP VL+V+ ++ + L+
Sbjct: 119 LGELVDIISTGSNDVYVVHGGGDKEILIPALDDVVLDVDTVAGRMTVSLPEGLLD 173
>gi|301063497|ref|ZP_07204029.1| 16S rRNA processing protein RimM [delta proteobacterium NaphS2]
gi|300442436|gb|EFK06669.1| 16S rRNA processing protein RimM [delta proteobacterium NaphS2]
Length = 173
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
D ++L + HG+ G + I S++++ L L + +R +++
Sbjct: 2 PDNVILFGRVLRPHGMEGLLRISSFSHSVASLLNAETVFLKLENGKSRHTKVISARPHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+ +G+ NI A LR +Y + E DE+F +L + F G + G
Sbjct: 62 IFLVKLAGLTNIDQAEALRGADIYISKSTLVR---ERDEYFWFELLGLSVFSDDGDFLGV 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + G+ I +K E+ L+P V ++L+ K+++ P+ L+
Sbjct: 119 VSQIIPAGSNEIYVVK-NKEREILLPAAHEVVNHIDLKNGKMIVSPVEGLLD 169
>gi|332638246|ref|ZP_08417109.1| 16S rRNA processing protein, RimM [Weissella cibaria KACC 11862]
Length = 167
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 7/167 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L + TI THG+ GEV + + + P + N+ ++ E+ I + + +
Sbjct: 3 LYKVGTIVNTHGIRGEVRVIATTDFPEERFAKGNKLIIDGKSPVEVEIATVRNHKQFVLL 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCG 121
+F + NI+ + + L + +D L EDEF+ ++ ++ D G+ G+V
Sbjct: 63 SFKDLQNINLVEQYKTHDLMVPEEALQD--LAEDEFYYHEIVGLDVIDNATGQVLGKVAE 120
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ A + +K + IP+ + V E++L +D +
Sbjct: 121 IMELPANDVWVVKAKGQDDLFIPYIENVVTEIDLDAGVAKVDMLEEI 167
>gi|258514484|ref|YP_003190706.1| 16S rRNA processing protein RimM [Desulfotomaculum acetoxidans DSM
771]
gi|257778189|gb|ACV62083.1| 16S rRNA processing protein RimM [Desulfotomaculum acetoxidans DSM
771]
Length = 173
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNREL-RILKMYRKNKRFI 61
+ + I T G G V + + P + +Y+ L +Y K +
Sbjct: 8 NYITIGEIVNTQGNRGYVRVLPLTDFPERFKGMKQVSVYTKGAYRLMHPEDVYNHKKFVV 67
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F I ++ +A L+ L + +D L ++ +L M ++ +G+++G++
Sbjct: 68 IKFKEIPDMTAAESLKGGLLQVEPKDI--VPLPRGSYYVFNLMGMNVYNSEGRHYGRIKD 125
Query: 122 VYNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ GA + + EK LIP K V ++++ K+++D
Sbjct: 126 ILTTGANDVYIVWYEAEKRDLLIPALKQVVKLIDVENKKMVVDLPEGL 173
>gi|23464908|ref|NP_695511.1| Rim-like protein involved in efficient processing of 16S rRNA
[Bifidobacterium longum NCC2705]
gi|23325500|gb|AAN24147.1| possible Rim-like protein involved in efficient processing of 16S
rRNA [Bifidobacterium longum NCC2705]
Length = 207
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 192
Query: 161 LIDPIAAGLNNTTM 174
+DP + M
Sbjct: 193 TLDPPGGLIPGCGM 206
>gi|209573744|sp|A8L5A4|RIMM_FRASN RecName: Full=Ribosome maturation factor rimM
Length = 218
Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 49/216 (22%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPID-------LNRYVLYSNDNRE--------- 47
+ + V++ +G HG+ G+V +D + P L R V +R
Sbjct: 1 MGEPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAAD 60
Query: 48 ---------------------------LRILKMYRKNKRFIATFSGIDNIHSASELRDLK 80
L ++ + R + F G+ + +A LR
Sbjct: 61 AVGTAAGPGSAGDSGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSF 120
Query: 81 LYAKRQDFKD-----EELEEDE-FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIK 134
L + +E ++ E +++ DL + G G+V V + G IL I
Sbjct: 121 LTIDSDECGPAVDPDDEDDDGELWWDRDLVGLHARTPAGDVLGEVVDVIHSPGGEILAIG 180
Query: 135 NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+L+PF + V V+ I++DP L+
Sbjct: 181 RPEGGEYLVPFVREIVPTVDPAAGHIVVDPPPGLLD 216
>gi|170077861|ref|YP_001734499.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
gi|209573625|sp|B1XKY8|RIMM_SYNP2 RecName: Full=Ribosome maturation factor rimM
gi|169885530|gb|ACA99243.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
Length = 175
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYV-LYSNDNRELRILKMY--RKN 57
+++ + GL GEV I+ + P R++ L + D + + + +
Sbjct: 4 QDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGK 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-W 116
F+ F I + A +R K+ + D ELE DE+ +DL +E FD +
Sbjct: 64 NLFVVKFEHIQDRTQAENIRGAKVLVRAGDRP--ELEADEYHVSDLIGLEVFDYNTQAKL 121
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V +Y A +LE+ + +K L+PF K V V+L EN++ +D
Sbjct: 122 GIVSDLY-TAAQDVLEVTDANQKKHLVPFVKAIVPVVDLVENRLEVDAPPGLFE 174
>gi|306831607|ref|ZP_07464765.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306833750|ref|ZP_07466876.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304424087|gb|EFM27227.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304426392|gb|EFM29506.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 182
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + ++ + +R E+ I ++
Sbjct: 12 NYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIASHRKQKN 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQ
Sbjct: 72 FDIVKFKGMYHINDIEKYKGCTLKVAEENLSD--LDDGEFYYHEIIGLDVYEND-VLIGQ 128
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ N+I +D + +
Sbjct: 129 VKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDVAGNRIDVDVLEGLDDED 182
>gi|167749744|ref|ZP_02421871.1| hypothetical protein EUBSIR_00711 [Eubacterium siraeum DSM 15702]
gi|167657227|gb|EDS01357.1| hypothetical protein EUBSIR_00711 [Eubacterium siraeum DSM 15702]
gi|291529953|emb|CBK95538.1| 16S rRNA processing protein RimM [Eubacterium siraeum 70/3]
gi|291556360|emb|CBL33477.1| 16S rRNA processing protein RimM [Eubacterium siraeum V10Sc8a]
Length = 170
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIAT 63
+ + + I T GL GEV + Y ++ + + + D +EL + K +
Sbjct: 4 QFLEIGKIVATQGLGGEVRVQYYCDSADVICSFDRLFLGKDKQELEVEKARPHKTLAVLK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGV 122
GIDN+ A + LY R D EL E F DL +E D GK +G+V +
Sbjct: 64 LGGIDNVDEAKTIVGKMLYMDRDD---VELPEGVNFIQDLIGLEVRDADTGKVYGKVTDI 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
Y GA + E+K K + P +LE N+ + ++I P+ +
Sbjct: 121 YQHGAADVYELKTPDGKELMFPAIPEVLLEKNIDDGYLVIRPLDGLFDEE 170
>gi|317052720|ref|YP_004113836.1| 16S rRNA processing protein RimM [Desulfurispirillum indicum S5]
gi|316947804|gb|ADU67280.1| 16S rRNA processing protein RimM [Desulfurispirillum indicum S5]
Length = 166
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK-NKRFIATFS 65
++ +A I T GL GE+ + S N P + ++ ++R + +
Sbjct: 1 MLSIARITKTRGLRGELQLFSLFNEPGRFEGLKHLHIGGVRFAVSRLRIADSQRLVVSLK 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D I A EL + EDE+F+ +L+++ + G+ G + + +
Sbjct: 61 GVDTIEQAEELVGQDACLPVDEIPRY---EDEYFDFELQKLRVINDDGEELGSLTQIIHT 117
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
GA + EI + K ++IP + E+NL+E +L+ PI ++ +
Sbjct: 118 GAKDVYEILSPGGKRWMIPANHEFIPEINLEEGYMLVRPIPGMMDEDAL 166
>gi|239908104|ref|YP_002954845.1| probable 16S rRNA processing protein RimM [Desulfovibrio magneticus
RS-1]
gi|239797970|dbj|BAH76959.1| probable 16S rRNA processing protein RimM [Desulfovibrio magneticus
RS-1]
Length = 184
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 13/177 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-------SNDNRELRILKMYRKN 57
K +++ + HG+ GE+ +DS+A++P R R+ +
Sbjct: 4 SKYIIVGVVARPHGVRGELVVDSHADSPTYFARGSTLRLSPPSDPGRGRDYVVRAARPHQ 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-- 115
R + T + + +A LR L + EDE F DL +
Sbjct: 64 DRILITLDNVPDRTAADALRGLAICVPADRLVAA--AEDEVFLHDLPGLRVRLADAAPTD 121
Query: 116 --WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V ++G I I++ + L P T V +V+L + IDP L+
Sbjct: 122 PDLGVIEDVRDYGGPEIWVIRDAKGREILFPATDDFVPDVDLDAGVVTIDPPPGLLD 178
>gi|322373350|ref|ZP_08047886.1| 16S rRNA processing protein RimM [Streptococcus sp. C150]
gi|321278392|gb|EFX55461.1| 16S rRNA processing protein RimM [Streptococcus sp. C150]
Length = 172
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 73/170 (42%), Gaps = 10/170 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNKRFIA 62
+ I T GL GE+ + S + + + L+ + + ++ + + I
Sbjct: 6 VGKIVNTQGLQGELRVLSVTDFADERFKKKSLLALFDDKDNYIMDVEVASHRKHKNFDIV 65
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQV +
Sbjct: 66 KFKGLYHINDVEKYKGYSLKVAEENLTD--LDDGEFYYHEIIGLDVYEGD-TLIGQVKEI 122
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA + +K +K L+P+ VL+V++ +I ++ + +
Sbjct: 123 LQPGANDVWVVKRKGKKDLLLPYIPPVVLDVDVAAGRIEVELMEGLDDED 172
>gi|256849813|ref|ZP_05555244.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
gi|256713302|gb|EEU28292.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
Length = 171
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+A I T HGLNGEV + + P D + ++ L + K + ++ F+
Sbjct: 6 VARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTVAKSRPFKQFWLVQFA 65
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYN 124
I +I A +L+ L D EL E ++ D+ + + D + GK G++ + +
Sbjct: 66 EITDIDQAEKLKGKILVVSEAD--RGELPEGVYYYKDIFDCDVIDEESGKRLGKITDIES 123
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GA I + K + IP V +V++ K+ ++ + +
Sbjct: 124 PGANDIWLVHEDNGKEYWIPNIASVVKKVDVANKKVYVELLEGLRDED 171
>gi|209573749|sp|A1R7G4|RIMM_ARTAT RecName: Full=Ribosome maturation factor rimM
Length = 184
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + + P + +V+ L I +
Sbjct: 3 LQVARIGKPHGIRGEVTVQVLTDAPSERFVAGTEFVVEPASAGPLTIRSARWNKDILLLG 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I + ++A +R KL+ + ++ DE+ +E ++ +L +E + G+V +
Sbjct: 63 FEEIADRNAAEVIRGAKLFIETEELSDEDDDEG-WYEHELVGLEAR-VGSQVVGKVAALS 120
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+L + K LIPF V EVN++ ILI P + + + P
Sbjct: 121 TLPVQDLLTVTTEEGKEILIPFVDEIVPEVNVEGGYILITPPSGLF---EINDENAKEPK 177
Query: 184 DSAGKKS 190
D AG +
Sbjct: 178 DGAGDDA 184
>gi|172060005|ref|YP_001807657.1| 16S rRNA-processing protein RimM [Burkholderia ambifaria MC40-6]
gi|209573545|sp|B1YV58|RIMM_BURA4 RecName: Full=Ribosome maturation factor rimM
gi|171992522|gb|ACB63441.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MC40-6]
Length = 225
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 48 PDDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF EL DEF+ DL +E + Q
Sbjct: 108 GDTVVAHAAGVSDRDAALALRGFRVFVRREDFP--ELAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|88797969|ref|ZP_01113556.1| 16S rRNA-processing protein [Reinekea sp. MED297]
gi|88779166|gb|EAR10354.1| 16S rRNA-processing protein [Reinekea sp. MED297]
Length = 177
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE----LRILKMYRKNK 58
K + V++ I + +G+ G V + SY + Y ++ + + + K K
Sbjct: 5 KPEDYVVLGNISSVYGIKGWVKVYSYTEPMDRILEYGSWTLRKGQDLILVEVDKGRSHGK 64
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A G+D+ A + ++ + EL E +++ +LE + + G
Sbjct: 65 GMVAHLKGVDDREVAKQYSGYEICVPQDRLP--ELPEGDYYWYELEGLAVVTTKDVRLGV 122
Query: 119 VCGVYNFG-AGSILEIKN----TMEKTFLIPFTKFAVLEVNLQENKILID 163
V + + G + +L +K + LIP+ VL+V+L+ +IL+D
Sbjct: 123 VDYLMSAGSSNDVLVVKGDQHCADRRERLIPYVDQFVLDVSLEAGRILVD 172
>gi|320527193|ref|ZP_08028379.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
gi|320132384|gb|EFW24928.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
Length = 169
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFI 61
+ + I THG+ GEV I+SY++ + Y+ + + + +
Sbjct: 3 YICIGKIINTHGIKGEVKIESYSDFDEERYTKSKQVYICVDEKYLPVTVASYRKHKGFPL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+F + NI+ + + ++Y D K +L++ E++ DL + D +G G++
Sbjct: 63 VSFVDLQNINFVEQYKGCEIYIDEADRK--QLKKGEYYRKDLVGLTVVDEEGITVGKIIS 120
Query: 122 VYNF-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V GA + L ++ K LIP+ V V+L++ + I + L
Sbjct: 121 VEETLGAQNNLRLQLEDAKEVLIPYIPMIVKNVDLEKKVMTIHRMGGLL 169
>gi|311693650|gb|ADP96523.1| 16S rRNA-processing protein RimM [marine bacterium HP15]
Length = 167
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIATFS 65
+ I + G+ G + + SY + + Y ++ ++ + R+ + +
Sbjct: 2 IGRITSVFGVKGWLKVFSYTDPKEGILNYPDWTLDLDGKRIPAKLEEGRRQGQGIVVRLK 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI++ A ++ + L + E++ LE ++ F + G+V +
Sbjct: 62 GINDRDLARTYCGAEVRVSTAELP--PLPDGEYYWFQLEGLDVFTVDDECLGKVHHLMET 119
Query: 126 GAGSILEIKNTME----KTFLIPFTK-FAVLEVNLQENKILID 163
G+ +L ++ T + LIP+ V V+L ++++D
Sbjct: 120 GSNDVLVVQATAGSIDQRERLIPYLPGEVVQSVDLAAKQMVVD 162
>gi|290580675|ref|YP_003485067.1| putative 16S rRNA processing protein [Streptococcus mutans NN2025]
gi|254997574|dbj|BAH88175.1| putative 16S rRNA processing protein [Streptococcus mutans NN2025]
Length = 172
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
K + I T GL GEV + S + + + L+ + + I +
Sbjct: 2 KYFNVGKIVNTQGLRGEVRVLSVTDFADERFKKGSQLALFDKKDHFAMTVEIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L D LE+ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIVKFKGLYHINDVEKYRDFTLKVTEDHLVD--LEDGEFYYHEIIGLDVYEND-ILIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K +K L+P+ +L+V++ +I + + +
Sbjct: 119 VKEILQPGANDVWVVKRKGKKDLLLPYIPSVILKVDVPNGRIDVTVLEGLDDEN 172
>gi|221068772|ref|ZP_03544877.1| 16S rRNA processing protein RimM [Comamonas testosteroni KF-1]
gi|220713795|gb|EED69163.1| 16S rRNA processing protein RimM [Comamonas testosteroni KF-1]
Length = 189
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMY 54
+ + I G+ G + ++++ P L + L + L + +
Sbjct: 15 DAIEVGRIADAWGIKGWFKVHAFSSAPEALFAAKDWFLQPAEKGAKHFAGTVVLPVKQAR 74
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+AT + + ++A LR +++ R+ F + ++ EF+ DL ++ +R+G
Sbjct: 75 FHADTIVATSQEVADRNAAEALRGARIFVAREHFP--KTDDGEFYWVDLMGLQVVNREGV 132
Query: 115 YWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 133 ALGVVRDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 184
>gi|186475535|ref|YP_001857005.1| 16S rRNA-processing protein RimM [Burkholderia phymatum STM815]
gi|209573554|sp|B2JF30|RIMM_BURP8 RecName: Full=Ribosome maturation factor rimM
gi|184191994|gb|ACC69959.1| 16S rRNA processing protein RimM [Burkholderia phymatum STM815]
Length = 231
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRELR-ILKMYRK 56
D V + I +GL G V + ++A+ + R+ L R+ L+
Sbjct: 54 PDDAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSTKRWWLEKGRERQSTPCLQSKVH 113
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR ++Y +R+DF L DE++ DL ++ + G
Sbjct: 114 GDSIVAQLGGTADRDAALALRGHRVYVRRRDFPA--LGTDEYYWVDLVGLDVVNEAGIEL 171
Query: 117 GQVCGVYNFGAGSILEIKNT----MEK----TFLIPFTKFAVLEVNLQENKILID 163
G+V + + GA S+L I+ K LIPF V V+ KI++D
Sbjct: 172 GKVADLIDNGAQSVLRIEYPAIGKDGKPVIGERLIPFVGVYVKTVDQAAKKIIVD 226
>gi|114320046|ref|YP_741729.1| 16S rRNA processing protein RimM [Alkalilimnicola ehrlichii MLHE-1]
gi|122312116|sp|Q0AA98|RIMM_ALHEH RecName: Full=Ribosome maturation factor rimM
gi|114226440|gb|ABI56239.1| 16S rRNA processing protein RimM [Alkalilimnicola ehrlichii MLHE-1]
Length = 170
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M D +V M + HG+ G V + S+ + Y + D +
Sbjct: 1 MEGADDIVPMGEVVGLHGVRGWVKVYSHTEPREAILDYPHWYLRRDDGDWVPVERTAGRC 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ K +A F +++ A L++ R+D EL E +++ DLE + + G+
Sbjct: 61 QGKGLVAAFRDVEDRDRARAYIGLQIGVPRRDLP--ELPEGQYYWADLEGLAAYTTGGEP 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
G+V ++ GA +L ++ ++ L+PF V V+L +I +D
Sbjct: 119 LGRVSHLFATGANDVLVLQ--GDRERLVPFVYGQTVRRVDLTAGRIELD 165
>gi|296536510|ref|ZP_06898600.1| 16S rRNA processing protein RimM [Roseomonas cervicalis ATCC 49957]
gi|296263166|gb|EFH09701.1| 16S rRNA processing protein RimM [Roseomonas cervicalis ATCC 49957]
Length = 209
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ +L+ IG HG+ G V ++++ +P + Y S+++ R + N +A
Sbjct: 4 QRILVGEIGRPHGVRGIVRVNAFTADPAAIAGYGPLSDESGARRFALQWLGNG--LARIE 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + +A+ L +LY +R E E+EF+ DL + D G G V V ++
Sbjct: 62 GVADRDAAARLTGTRLYVERDRLPATE--EEEFYLADLVGLAVRDGSGATLGSVRSVEDY 119
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
GAG L + + + L+PFT+ V +V + E +
Sbjct: 120 GAGPFLTVIDGEGRELLLPFTRAVVPQVIIAEGYL 154
>gi|241662489|ref|YP_002980849.1| 16S rRNA-processing protein RimM [Ralstonia pickettii 12D]
gi|240864516|gb|ACS62177.1| 16S rRNA processing protein RimM [Ralstonia pickettii 12D]
Length = 184
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLY--------SNDNRELRILKM 53
D LV + +G +G+ G + + + A+ ++ + L S D R +
Sbjct: 12 PDDLVEVGYVGGAYGIRGWIKVQLHGDADALLNARTWWLKPAGGALATSADWRVFPVGTS 71
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ +A + + A LR ++ R DF E ++DEF+ DL + Q
Sbjct: 72 REHSGTVVAGSPAAPDRNVAEALRGYAVWVSRADFP--EPDDDEFYWVDLIGATVVNEQQ 129
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G V G+ + GA IL I E L+PF + V V++ +I++D GL+
Sbjct: 130 ETLGTVGGLIDNGAHQILRIVGEGEVERLVPFVEVYVKSVDVAGKRIVVD---WGLD 183
>gi|209573747|sp|Q0BH68|RIMM_BURCM RecName: Full=Ribosome maturation factor rimM
Length = 226
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 48 PDDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 GDTVVAHAAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|48474469|sp|Q8G7F9|RIMM_BIFLO RecName: Full=Ribosome maturation factor rimM
Length = 202
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 68
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 69 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 127
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 128 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 187
Query: 161 LIDPIAAGLNNTTM 174
+DP + M
Sbjct: 188 TLDPPGGLIPGCGM 201
>gi|23335825|ref|ZP_00121057.1| COG0806: RimM protein, required for 16S rRNA processing
[Bifidobacterium longum DJO10A]
gi|189439917|ref|YP_001954998.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|189428352|gb|ACD98500.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|291517401|emb|CBK71017.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum F8]
Length = 204
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEADDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|307294707|ref|ZP_07574549.1| 16S rRNA processing protein RimM [Sphingobium chlorophenolicum L-1]
gi|306879181|gb|EFN10399.1| 16S rRNA processing protein RimM [Sphingobium chlorophenolicum L-1]
Length = 159
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A I HG+ GEV + + L Y + R L + + +A F
Sbjct: 3 DKPVTLAVIIGAHGVAGEVRLKLFGEGAETLKSYGGFDAGGRTLTLRSVRPGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + +A LR +L R L E E+++ DL ++ F +G+ G V V N
Sbjct: 63 AEVGDRTAAEGLRGTELTVPRSALPA--LGEGEYYHADLIDLPCFSSEGEGLGHVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+E++ K F++P V + E + +I+
Sbjct: 121 FGAGDIIEVERPNGKRFMVPMHA-----VTVAEGRAVIE 154
>gi|302381701|ref|YP_003817524.1| 16S rRNA processing protein RimM [Brevundimonas subvibrioides ATCC
15264]
gi|302192329|gb|ADK99900.1| 16S rRNA processing protein RimM [Brevundimonas subvibrioides ATCC
15264]
Length = 174
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIAT 63
KL+L+ + G+ GEV I +Y +P+ L Y +L ++ + L +L +
Sbjct: 5 KLILVGHVAGGFGVKGEVKITAYTADPLALTAYGPLLRADGSHALTVLSARPTKDGIVGR 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ A LR+LKL+ R F E +EDEF+ DL +E D G G V V
Sbjct: 65 VKEVATKEEADALRNLKLHVPRDRFP--EADEDEFYLADLIGVEARDPDGVVLGTVKAVQ 122
Query: 124 NFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKIL 161
NFGA +LEI T+ +PFT+ V +++L + +L
Sbjct: 123 NFGADDMLEIAPAAGGPTWFLPFTRACVPDLHLSDGWLL 161
>gi|209573751|sp|A1WB51|RIMM_ACISJ RecName: Full=Ribosome maturation factor rimM
Length = 190
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRIL 51
V + I G+ G + Y++NP L ++L + L I
Sbjct: 13 PSDAVEVGRITDAWGVKGWFKVLPYSSNPEALLAAKSWLLQPAEKGAKSFFAGTVLLPIR 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ + +A G+D+ +A LR +++ R +F +DE++ DL + +R
Sbjct: 73 QARTHSDSVVAWAQGVDDRDAAEALRGARIFVPRANFPVA--GDDEYYWVDLIGLPVVNR 130
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILID 163
+G G V + G + L + E +IPF V +V+L I +D
Sbjct: 131 EGVALGTVRDLLPTGPQTTLVLAYEHEGKPHERMIPFVSAYVDKVDLAGRCITVD 185
>gi|312866720|ref|ZP_07726934.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
F0405]
gi|311097801|gb|EFQ56031.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
F0405]
Length = 175
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKM 53
M K+ + I T GL GE+ + S + + + L+ ++ + I
Sbjct: 1 MNKM-NYFNVGKIVNTQGLQGEMRVLSVTDFADERFKKGAELALFDEKDQFVQTVTIASH 59
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ I F + +I++ + + L +D D L+E EF+ ++ ++ ++
Sbjct: 60 RKHKNFDIIKFKDMYHINAIEKFKGFSLKVAEEDLTD--LDEGEFYYHEIIGLDVYEND- 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ GQ+ + GA + +K ++ L+P+ VL +++ N++ +D + +
Sbjct: 117 QLIGQIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVDILEGLDDED 175
>gi|89091992|ref|ZP_01164947.1| putative 16S rRNA processing protein RimM [Oceanospirillum sp.
MED92]
gi|89083727|gb|EAR62944.1| putative 16S rRNA processing protein RimM [Oceanospirillum sp.
MED92]
Length = 177
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+++ +I + +G+ G V I S + ++ Y + + L + + + K IA
Sbjct: 10 LIVGSITSVYGVKGWVKIFSNTDPMENIANYSPWLLKVDGQIKPLEVDSVKKHGKGLIAK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ A + + LEE EF+ + LE + + + G+V +
Sbjct: 70 LVGVDDRDVARNFCGMDILVNADLLPA--LEEGEFYWSQLENLLVYTESDQLLGKVVRLM 127
Query: 124 NFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
GA +L ++ T +K L+P+ + E+NL+ + +D
Sbjct: 128 ETGANDVLVVRGTADSIDQKERLLPYLPDQVIKEINLETGTMRVD 172
>gi|110833660|ref|YP_692519.1| 16S rRNA processing protein RimM [Alcanivorax borkumensis SK2]
gi|123050629|sp|Q0VRF1|RIMM_ALCBS RecName: Full=Ribosome maturation factor rimM
gi|110646771|emb|CAL16247.1| 16S rRNA processing protein RimM [Alcanivorax borkumensis SK2]
Length = 196
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--------------SNDNRELRIL 51
+LV++ I HG+ G V + SY + ++L +Y + + + +++
Sbjct: 17 QLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVT 76
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ K IA G+ + +A+ L + + E++ DL +
Sbjct: 77 GFRPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQS--GQGEYYWRDLIGLRVKHV 134
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
G G V + GA ++ ++ + LIP+ + + ++L++ ++ +D
Sbjct: 135 NGMDLGSVTRMVETGANDVVVVRGDRNSLDRRERLIPWLPEDVITAISLEDGEMTVD 191
>gi|324999613|ref|ZP_08120725.1| 16S rRNA processing protein RimM [Pseudonocardia sp. P1]
Length = 187
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 20 NGEVYIDSYANNPIDLNRYVLYSNDNR-------ELRILKMYRKNKRFIATFSGIDNIHS 72
GEV ++S ++P + + +R L + + R++ F G+ +
Sbjct: 28 RGEVVVESRTDSPEERFAPGAVLHGSRRRGSGPGPLTVATSRAHSGRWLVLFEGVGDRDG 87
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR ++L + + + E EF L + G G + V + GS+L
Sbjct: 88 AEELRGVQLLLPTTELAEPDDPE-EFHVHRLTGLRAELTDGTPAGTITDVVHGPGGSLLV 146
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ ++PF V EV+L+ ++++DP L+
Sbjct: 147 VTRPAGHEAMVPFVGEIVPEVDLEGGRVVLDPPEGLLD 184
>gi|288905522|ref|YP_003430744.1| 16S rRNA-processing protein [Streptococcus gallolyticus UCN34]
gi|325978512|ref|YP_004288228.1| ribosome maturation factor rimM [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732248|emb|CBI13815.1| putative 16S rRNA-processing protein [Streptococcus gallolyticus
UCN34]
gi|325178440|emb|CBZ48484.1| Ribosome maturation factor rimM [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 172
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + ++ + +R E+ I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ D L++ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIVKFKGMYHINDIEKYKGCTLKVAEENLSD--LDDGEFYYHEIIGLDVYEND-VLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ N+I +D + +
Sbjct: 119 VKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDVAGNRIDVDVLEGLDDED 172
>gi|254430524|ref|ZP_05044227.1| 16S rRNA processing protein RimM [Cyanobium sp. PCC 7001]
gi|197624977|gb|EDY37536.1| 16S rRNA processing protein RimM [Cyanobium sp. PCC 7001]
Length = 172
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
++ L+++ + GL GEV + ++ P R + RE+ +L +
Sbjct: 1 MNNLLVVGKVVAAQGLRGEVRVLPMSDFPERFTRPGRRWLQRRGAEPREVELLTGRQLPG 60
Query: 59 R--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKY 115
+ F+ +G+++ +A L +L + D L + EF DL +E G+
Sbjct: 61 KELFVLRLAGVESRDAAEALVGEELLVRSDDRPR--LAKGEFHLLDLVGLEVRLLASGEV 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +L + ++ LIPF V EV L E I I P L
Sbjct: 119 VGTVTDLIHAG-NDLLAVA-AGDRQLLIPFVAAIVPEVKLAEGWIGITPPPGLLE 171
>gi|254804474|ref|YP_003082695.1| 16S rRNA processing protein [Neisseria meningitidis alpha14]
gi|254668016|emb|CBA04386.1| 16S rRNA processing protein [Neisseria meningitidis alpha14]
Length = 169
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ TDL M ++
Sbjct: 61 NGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 168
>gi|227431963|ref|ZP_03913983.1| 16S rRNA processing protein [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227352248|gb|EEJ42454.1| 16S rRNA processing protein [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 173
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 7/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR-ELRILKMYR 55
M + + TI THG+ GEV I + + D + ++ + R +++
Sbjct: 1 MTNTENYFKVGTIVNTHGIRGEVKIMAITDFTQDRFKKGADLLIDTKQGRIPVKVQSSRL 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F G+ NI+ + + +Y + ELE+D+++ ++ + D G
Sbjct: 61 HKNMWLVLFVGVTNINEIEKYKGDDVYIEGTARP--ELEDDQYYYDEIIDSTVVDLDGNK 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + ++ + LIP V V++ I ID + L+
Sbjct: 119 IGVVKEIMETGANDVWIVQRDGQLDALIPMIDDVVKSVDVDAKLITIDALEGLLD 173
>gi|170781188|ref|YP_001709520.1| 16S rRNA-processing protein RimM [Clavibacter michiganensis subsp.
sepedonicus]
gi|209573570|sp|B0REN0|RIMM_CLAMS RecName: Full=Ribosome maturation factor rimM
gi|169155756|emb|CAQ00877.1| putative 16S rRNA processing protein [Clavibacter michiganensis
subsp. sepedonicus]
Length = 211
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 13/188 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-----NRELRILKMYRKNKR 59
+ + HGL G V ++ + ++P + L D R L + ++ N
Sbjct: 18 RVGRLTKAHGLKGAVKLELFTDDPDKRFVPGAEFSLQVPDSSPWHGRTLTLTELRWYNSH 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ + +A L L+ DE E D +++ L ++ R G G V
Sbjct: 78 PVGFFEGVADRTAAESLAKAILWMTP--PADEPAEPDAWYDHQLVGLKVL-RDGVEVGTV 134
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
V +F A +L + T L+PF + V V+++ ++I P + P
Sbjct: 135 SLVDHFPAQDLLHVDTPSG-TVLVPFVQAIVPSVDVEAGTLVITPPLGLFEEIPDEQPTP 193
Query: 180 DCPLDSAG 187
D+
Sbjct: 194 SATSDAEP 201
>gi|254252904|ref|ZP_04946222.1| RIMM_BURS3 Probable 16S rRNA-processing protein rimM [Burkholderia
dolosa AUO158]
gi|124895513|gb|EAY69393.1| RIMM_BURS3 Probable 16S rRNA-processing protein rimM [Burkholderia
dolosa AUO158]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ ++ R+ L R R+++
Sbjct: 49 PDDAVEVGAVVDAYGLKGWIKVAAHADAGRGGDALLNARRWWLERGAERLSARLVQSKTH 108
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL ++ ++Q
Sbjct: 109 GDTVVAQPAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLDVVNQQSVAL 166
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
GQV G+ + GA SI+ ++ LIPF V V+ +I++D
Sbjct: 167 GQVIGMIDNGAHSIMRVEYPAIGKDGRPGTAERLIPFVGVYVKTVDRAARRIVVD 221
>gi|171778252|ref|ZP_02919458.1| hypothetical protein STRINF_00300 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282952|gb|EDT48376.1| hypothetical protein STRINF_00300 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 182
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + ++ + +R E+ I ++
Sbjct: 12 NYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKKGSKLAIFDDKDRFIIEVEIASHRKQKN 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ ELE+ EF+ ++ ++ ++ GQ
Sbjct: 72 FDIIKFKGMYHINDIEKYKGCTLKVAEENL--SELEDGEFYYHEIIGLDVYEND-VLVGQ 128
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ N++ +D + +
Sbjct: 129 VKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIAANRVDVDILEGLDDED 182
>gi|213691294|ref|YP_002321880.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522755|gb|ACJ51502.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457361|dbj|BAJ67982.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 204
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVVNVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|270158991|ref|ZP_06187647.1| 16S rRNA processing protein RimM [Legionella longbeachae D-4968]
gi|289166168|ref|YP_003456306.1| 16S rRNA processing protein RimM [Legionella longbeachae NSW150]
gi|269987330|gb|EEZ93585.1| 16S rRNA processing protein RimM [Legionella longbeachae D-4968]
gi|288859341|emb|CBJ13277.1| putative 16S rRNA processing protein RimM [Legionella longbeachae
NSW150]
Length = 168
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 4 LDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV----LYSNDNRELRILKMYRKN 57
+D +++A G HG+ G V + S+ ++ +Y +N + +++++ ++
Sbjct: 1 MDNQSWIIIARFGRPHGVKGFVTVHSFTEPRDNVLKYTNWHAFINNKWQPIKLMRAEVQS 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K I G + L ++++ R E+L E++ L M ++QG+ +G
Sbjct: 61 KSIIVQIEGYSERELVAHLTNIEIAVHRDQL--EKLNPGEYYWHQLIGMNVINQQGETFG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
+V + GA +L ++ K LIP+ +L+++ + I ++
Sbjct: 119 KVTEIIPTGANDVLVVEGN--KRHLIPYLPGQFILDIDPNQELITVN 163
>gi|170700971|ref|ZP_02891953.1| 16S rRNA processing protein RimM [Burkholderia ambifaria IOP40-10]
gi|170134111|gb|EDT02457.1| 16S rRNA processing protein RimM [Burkholderia ambifaria IOP40-10]
Length = 225
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 48 PDDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 GDTVVAHAAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|219849545|ref|YP_002463978.1| 16S rRNA processing protein RimM [Chloroflexus aggregans DSM 9485]
gi|219543804|gb|ACL25542.1| 16S rRNA processing protein RimM [Chloroflexus aggregans DSM 9485]
Length = 169
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKN-KR 59
+D L+ + +G G+ G++ + S +++P L R+ V ++ +++
Sbjct: 1 MDDLLYIGVLGAPFGVRGQIKLHSISSHPEHLIRHLRTVFIGPKRIPHQVTRLFLHKPGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I + + +AS+LR ++Y D L EDEFF DL + G G+V
Sbjct: 61 LIIQLQSVTDRDAASDLRGAEVYIAAAD--AAPLGEDEFFYHDLIGLAAVTDTGDLIGEV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V GAG I I L+P + ++ ++L E +++I PI L+
Sbjct: 119 RDVLETGAGEIAVIARRGRADALVPMVRDFIVAIDLVERRLVIRPIDGLLD 169
>gi|56417251|ref|YP_154325.1| 16S rRNA processing protein [Anaplasma marginale str. St. Maries]
gi|222475615|ref|YP_002564032.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Florida]
gi|56388483|gb|AAV87070.1| 16S rRNA processing protein [Anaplasma marginale str. St. Maries]
gi|222419753|gb|ACM49776.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Florida]
Length = 190
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIATF 64
+VL+ + HG+ G V + ++ +P ++ Y ++ + + + IA F
Sbjct: 24 DMVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADSVIAKF 83
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + + +LR +LY R L+EDEF+ +L M+ G +G + + N
Sbjct: 84 DGLSSRTESEKLRGKRLYVSRSSLPR--LQEDEFYENELIGMDAKLEDGTAYGVISAILN 141
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
FG+ I+E+ + K ++PF++ V+++
Sbjct: 142 FGSCDIIELSTSTGKVVMVPFSRSTFPVVDVERR 175
>gi|222111873|ref|YP_002554137.1| 16S rRNA-processing protein rimm [Acidovorax ebreus TPSY]
gi|221731317|gb|ACM34137.1| 16S rRNA processing protein RimM [Acidovorax ebreus TPSY]
Length = 190
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---------LRIL 51
V + I G+ G + Y++NP L ++L + L I
Sbjct: 13 PSDAVEVGRITDAWGVKGWFKVLPYSSNPEALLAAKSWLLQPAEKGAKSFFAGTVLLPIR 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ + +A G+D+ +A LR +++ R F +DE++ DL + +R
Sbjct: 73 QARTHSDSVVAWAQGVDDRDAAEALRGARIFVPRATFPAV--GDDEYYWVDLIGLPVVNR 130
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILID 163
+G G V + G + L + E +IPF V +V+L I +D
Sbjct: 131 EGVALGTVRDLLPTGPQTTLVLAYEHEGKPHERMIPFVSAYVDKVDLAGRCITVD 185
>gi|92115130|ref|YP_575058.1| 16S rRNA processing protein RimM [Chromohalobacter salexigens DSM
3043]
gi|122419171|sp|Q1QT49|RIMM_CHRSD RecName: Full=Ribosome maturation factor rimM
gi|91798220|gb|ABE60359.1| 16S rRNA processing protein RimM [Chromohalobacter salexigens DSM
3043]
Length = 184
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D+ V++ + + +G+ G + + SY + + + + + R ++ + K
Sbjct: 14 DEHVVLGRLTSPYGVKGWLKVYSYTSPIEGIFEHAEWVLSKRGERRACKLSQGRPHGKGL 73
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A+ GI + A + + +Q L +++ LE + G+ GQV
Sbjct: 74 VASLEGISSRELAEQWAGADILLPKQALPA--LAPGDYYWYQLEGLRVETLDGECLGQVN 131
Query: 121 GVYNFGAGSILEIKNT----MEKTFLIPFT-KFAVLEVNLQENKILID 163
++ GA +L I+ + E+ L+PF + +V+L ++++D
Sbjct: 132 YLFETGANDVLVIRPSEASLDERERLLPFLPDDVIRQVDLDAGRMIVD 179
>gi|114798866|ref|YP_758775.1| 16S rRNA processing protein RimM [Hyphomonas neptunium ATCC 15444]
gi|123323742|sp|Q0C668|RIMM_HYPNA RecName: Full=Ribosome maturation factor rimM
gi|114739040|gb|ABI77165.1| 16S rRNA processing protein RimM [Hyphomonas neptunium ATCC 15444]
Length = 181
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE--LRILKMYRKNKR 59
K +L+ M + HG+ GEV + S+ +P L Y ++ + L +
Sbjct: 5 TKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARPGKDH 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
FI LR L+A R E +EDEF+ DL M + + +V
Sbjct: 65 FIVRPKENLQKEDWDALRGCLLHASRDQLP--EADEDEFYFEDLIGMPVYTVGEEPEARV 122
Query: 120 CGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILI 162
V NFG+G +LEI+ T +P T+ V +++ ++I+I
Sbjct: 123 RAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMAAHRIVI 166
>gi|78484993|ref|YP_390918.1| 16S rRNA processing protein RimM [Thiomicrospira crunogena XCL-2]
gi|109893065|sp|Q31HX9|RIMM_THICR RecName: Full=Ribosome maturation factor rimM
gi|78363279|gb|ABB41244.1| 16S rRNA processing protein RimM [Thiomicrospira crunogena XCL-2]
Length = 181
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK- 56
K D+ +++ I +G+ G V I S+ + ++ Y + N+ R ++ + +
Sbjct: 4 SKQDEKIILGQINGIYGVQGWVKIFSHTDPRQNILSYSPWLVKVKNEWRTFQVEEGRAQQ 63
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +A GID+ A E ++ + E+ F+ L + +G+
Sbjct: 64 GGKSVVAKLEGIDDRDLAREYIGCEIAILPEQLPAT---EEGFYWMQLIGCQVTSVEGED 120
Query: 116 WGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKF-AVLEVNLQENKILID 163
GQV + GA +L ++ + + LIPF +L+V+++ +I +D
Sbjct: 121 LGQVTEIVETGAHDVLRVEKQSDAGLVSTLIPFVMETFILDVDVESKQIQVD 172
>gi|313890632|ref|ZP_07824260.1| 16S rRNA processing protein RimM [Streptococcus pseudoporcinus SPIN
20026]
gi|313121149|gb|EFR44260.1| 16S rRNA processing protein RimM [Streptococcus pseudoporcinus SPIN
20026]
Length = 172
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL----RILKMYRKNK 58
+ + I T GL GE+ + S +A+ + +D + I ++
Sbjct: 2 EFFNVGKIVNTQGLQGEMRVLSVSDFADERFQKGSVLALFDDKNQFVTNVEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F ++I++ + + L D L +DEF+ ++ ++ + + GQ
Sbjct: 62 FDIIKFKEHNHINAIEKYKGFTLKVSESHLSD--LPKDEFYYHEIIGLDVY-EGNQLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K +K L+P+ +L V+L+ +++ +D I GL++
Sbjct: 119 VKEILQPGANDVWVVKRKGKKDLLLPYIPPVILNVDLEHHRVEVD-IMEGLDDE 171
>gi|54293392|ref|YP_125807.1| hypothetical protein lpl0441 [Legionella pneumophila str. Lens]
gi|54296434|ref|YP_122803.1| hypothetical protein lpp0465 [Legionella pneumophila str. Paris]
gi|148360985|ref|YP_001252192.1| 16S rRNA processing protein RimM [Legionella pneumophila str.
Corby]
gi|296105949|ref|YP_003617649.1| 16S rRNA processing protein RimM [Legionella pneumophila 2300/99
Alcoy]
gi|67461336|sp|Q5WZE1|RIMM_LEGPL RecName: Full=Ribosome maturation factor rimM
gi|67461341|sp|Q5X7Z0|RIMM_LEGPA RecName: Full=Ribosome maturation factor rimM
gi|166226448|sp|A5IHJ6|RIMM_LEGPC RecName: Full=Ribosome maturation factor rimM
gi|53750219|emb|CAH11613.1| hypothetical protein lpp0465 [Legionella pneumophila str. Paris]
gi|53753224|emb|CAH14671.1| hypothetical protein lpl0441 [Legionella pneumophila str. Lens]
gi|148282758|gb|ABQ56846.1| 16S rRNA processing protein RimM [Legionella pneumophila str.
Corby]
gi|295647850|gb|ADG23697.1| 16S rRNA processing protein RimM [Legionella pneumophila 2300/99
Alcoy]
Length = 169
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M V++ G HG+ G V + S+ + ++ RY V + + L++L + +
Sbjct: 1 MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K IA G S L +L + + L E++ L M + +G +
Sbjct: 61 SKAIIAQIEGYPERELVSALTNLDIGVQESQLAA--LAPGEYYWYQLIGMSVINSKGDLF 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
G+V + G+ +L ++ EK LIP+ V+ ++ + I +D
Sbjct: 119 GKVVEIMPTGSNDVLVVE--GEKRHLIPYLPGQFVINIDESQQVITVD 164
>gi|260654908|ref|ZP_05860396.1| 16S rRNA processing protein RimM [Jonquetella anthropi E3_33 E1]
gi|260630410|gb|EEX48604.1| 16S rRNA processing protein RimM [Jonquetella anthropi E3_33 E1]
Length = 172
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNR----ELRILKMYRK 56
++ V++A + HG+ G V + + P R Y + L+ + R
Sbjct: 1 MEDRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDGEEVGQYPLKNVGELRS 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I G+ + A LR + + L E +++ DL ++ D G+
Sbjct: 61 KGQIILELGGLSDAAEAEALRGCFICVPPDEM--VPLPEGQYWIRDLVGLQAKDETGEVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V V GA I EI+ K L+PF + +V+L +++I + +
Sbjct: 119 GVVRDVLTTGASDIFEIEGLDGKKHLVPFVDQFIRQVSLDRRELVISMMEGLWD 172
>gi|224282417|ref|ZP_03645739.1| 16S rRNA-processing protein rimM [Bifidobacterium bifidum NCIMB
41171]
Length = 186
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ + IG GL GEV + + + P + + + ++E + R+I
Sbjct: 1 MLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFKNRWIVK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GKY 115
F GID+ ++ ++LY + D ++ LEED ++ DL +E + G+
Sbjct: 61 FEGIDDRDASEAANGIELYGEADD-PEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQV 119
Query: 116 WGQVCGVYNFGAGSILEIK-----------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + A ++L+I+ E T L+PF V +++L+E + IDP
Sbjct: 120 IGKVVDVLDS-AQTLLKIRLVSPVRDTVTGEVTESTALVPFVDELVPDIDLEEGYLTIDP 178
Query: 165 IAAGL 169
+
Sbjct: 179 PGGLI 183
>gi|125553343|gb|EAY99052.1| hypothetical protein OsI_21009 [Oryza sativa Indica Group]
Length = 644
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYV----LYSNDNRELRILKMYRK- 56
LV++ + HG+ G+V + + P R++ +E +++
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKAGDRP--KMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI------------------KNTMEKTFLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQDSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDPIAAGLNNTTMKNP 177
++ I P L +
Sbjct: 254 SREMWITPPKGLLELNARSDK 274
>gi|325963712|ref|YP_004241618.1| 16S rRNA processing protein RimM [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469799|gb|ADX73484.1| 16S rRNA processing protein RimM [Arthrobacter phenanthrenivorans
Sphe3]
Length = 182
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HG+ GEV + + P D +V+ L ++ +
Sbjct: 3 LQVARIGKPHGIRGEVTVQVLTDAPGDRFVPGTEFVVEPASAGPLTVVSARWNKDILLLG 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I + A LR KL+ + ++ +++ E ++ +L +E G+V +
Sbjct: 63 FEEIGTRNEAETLRGAKLFIETEELDEDDDE--GWYEHELVGLEAR-VGSNVVGKVAALN 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A +L + L+PF + V EVN++E IL+ P A
Sbjct: 120 TGTAQDLLMVTTPDGDEILVPFVEQIVPEVNIEEGYILLTPPAGLFE 166
>gi|218665436|ref|YP_002427224.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218517649|gb|ACK78235.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 171
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIAT 63
+ V++ + +G+ G V + S+ + + Y + D R + + + +A
Sbjct: 9 EWVVLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPDRRPWVLEDGRMQGEGVVAK 68
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ +++ A L ++ R D EL EF+ + L + +R+G G V
Sbjct: 69 LAQVEDREQARALIGQEIAVIRADLP--ELGAGEFYWSTLTGLRVLNREGIVLGTVSAFL 126
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA ++ I + LIP++ A V+L +I++D
Sbjct: 127 ETGANDVMVIDDGKGGELLIPWSAEASAGVDLPAGQIVVD 166
>gi|325295593|ref|YP_004282107.1| ribosome maturation factor rimM [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325066041|gb|ADY74048.1| Ribosome maturation factor rimM [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 188
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN----NPIDLNRYVLYSNDNRE-LRILKMYRKNKRFIA 62
V++ I HG+ GEV I ++ L+ +Y RE L + K+ +I
Sbjct: 24 VMIGKIVGVHGIKGEVKIKPESDIFEKQMEALDLIPVYRGTKREELCVEKLKPYKNLYIV 83
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I++ A E +L+ + K EL E EF+ +DL + F GK G + +
Sbjct: 84 KFKEINDRGEAEERVGGELWIDKN--KQVELGEGEFYFSDLIGSKVFTDDGKEVGILKEI 141
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
AG I E++ + LIPF V +V+++ +I++ I
Sbjct: 142 LEQPAGHIFEVEKSDGSKILIPFISQFVKDVDIENKRIVVSLIEGM 187
>gi|209573748|sp|B3DTN1|RIMM_BIFLD RecName: Full=Ribosome maturation factor rimM
Length = 199
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVEGSRTFKDRWIL 68
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 69 KLEGVDDRNAAEALNGVELYGEADDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 127
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 128 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEALVPDIDLEEQYL 187
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 188 TLDPPGGLI 196
>gi|171321194|ref|ZP_02910165.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MEX-5]
gi|171093532|gb|EDT38700.1| 16S rRNA processing protein RimM [Burkholderia ambifaria MEX-5]
Length = 225
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ +D R+ L R RIL+
Sbjct: 48 PDDAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 GDTVVAHAAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|52840642|ref|YP_094441.1| 16S rRNA processing protein RimM [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|67461349|sp|Q5ZYH5|RIMM_LEGPH RecName: Full=Ribosome maturation factor rimM
gi|52627753|gb|AAU26494.1| 16S rRNA processing protein RimM [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 169
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M V++ G HG+ G V + S+ + ++ RY V + + L++L + +
Sbjct: 1 MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K IA G S L +L + + L E++ L M + +G +
Sbjct: 61 SKAIIAQIEGYPKRELVSALTNLDIGVQESQLAA--LAPGEYYWYQLIGMSVINSKGDLF 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
G+V + G+ +L ++ EK LIP+ V+ V+ + I +D
Sbjct: 119 GKVVEIMPTGSNDVLVVE--GEKRHLIPYLPGQFVINVDESQQVITVD 164
>gi|121634386|ref|YP_974631.1| 16S rRNA-processing protein [Neisseria meningitidis FAM18]
gi|166226459|sp|A1KSK0|RIMM_NEIMF RecName: Full=Ribosome maturation factor rimM
gi|120866092|emb|CAM09830.1| putative 16S rRNA processing protein [Neisseria meningitidis FAM18]
gi|325127718|gb|EGC50629.1| 16S rRNA processing protein RimM [Neisseria meningitidis N1568]
gi|325131956|gb|EGC54656.1| 16S rRNA processing protein RimM [Neisseria meningitidis M6190]
gi|325137627|gb|EGC60204.1| 16S rRNA processing protein RimM [Neisseria meningitidis ES14902]
gi|325141854|gb|EGC64299.1| 16S rRNA processing protein RimM [Neisseria meningitidis 961-5945]
Length = 169
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTVSVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ TDL M ++
Sbjct: 61 NSELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 168
>gi|161869523|ref|YP_001598690.1| 16S rRNA-processing protein RimM [Neisseria meningitidis 053442]
gi|189040845|sp|A9M2D2|RIMM_NEIM0 RecName: Full=Ribosome maturation factor rimM
gi|161595076|gb|ABX72736.1| 16S rRNA processing protein [Neisseria meningitidis 053442]
Length = 169
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A L + R+ F E EDE++ DL M ++
Sbjct: 61 NSELQVKFEGINDRDLAFSLHGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 168
>gi|134295101|ref|YP_001118836.1| 16S rRNA-processing protein RimM [Burkholderia vietnamiensis G4]
gi|209573556|sp|A4JCJ8|RIMM_BURVG RecName: Full=Ribosome maturation factor rimM
gi|134138258|gb|ABO54001.1| 16S rRNA processing protein RimM [Burkholderia vietnamiensis G4]
Length = 225
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ + R+ L R +RIL+
Sbjct: 48 PDDAVEVGAVVDAYGLKGWIKVAAHADAGRGGDALLSARRWWLERGAERLSVRILQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+D+ +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 GDTVVAQPAGVDDRDAALAMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVSL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SIL ++ LIPF V V+ +I++D
Sbjct: 166 GKVSGMIDNGVHSILRVEYPTVGKDGAPATDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|258593817|emb|CBE70158.1| 16S rRNA processing protein, putative function [NC10 bacterium
'Dutch sediment']
Length = 175
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANN-PIDLNRYVLY----SNDNRELRILKMYRKNKRFIA 62
+ + + GLNGEV + YA++ I L+ + D E + ++ + + ++
Sbjct: 7 LALGRVVKAWGLNGEVKVQPYADSIVIAAGAATLHLRAATGDLVEYVVERVRQVGRAWVL 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+ I A +L +L + L + +++ DL + G+ G++ +
Sbjct: 67 QLRGVQTIEQAEQLVGRELLISKSTAPT--LPDGTYYHADLIGLRVVTEDGRELGRIVDI 124
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA + + +L+P T+ V +V+L +LI + +
Sbjct: 125 LETGANDVYVVHG-GGSEWLVPATREVVRKVDLARKMMLIHLLEGMIE 171
>gi|254292891|ref|YP_003058914.1| 16S rRNA processing protein RimM [Hirschia baltica ATCC 49814]
gi|254041422|gb|ACT58217.1| 16S rRNA processing protein RimM [Hirschia baltica ATCC 49814]
Length = 193
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATF 64
LV++A IG HG+ G V + S+ D Y L + + K Y++NK +
Sbjct: 11 DLVVVAQIGGAHGVRGHVRVRSFTVVAEDCFAYGPLLDENGDVIFTAKSYQENKDGFVVW 70
Query: 65 SGIDNIHSAS--ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
++N ++ + L+ R E EEDEF+ DL + G+ GQV V
Sbjct: 71 P-VENRQREEWMAMKGVLLHVPRNALP--EPEEDEFYFEDLIGSKVVHEDGRELGQVLNV 127
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCP 182
+NFGA +LE+K+ +++PFT + +V+++ + P L + + D
Sbjct: 128 HNFGADDLLELKSPHGTDYMLPFTLEIIPKVDVKAQLLTAKPEEQYLPDALRIDEPDDDE 187
Query: 183 LDSA 186
D++
Sbjct: 188 ADTS 191
>gi|261401426|ref|ZP_05987551.1| 16S rRNA processing protein RimM [Neisseria lactamica ATCC 23970]
gi|269208560|gb|EEZ75015.1| 16S rRNA processing protein RimM [Neisseria lactamica ATCC 23970]
Length = 169
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + YA++ +D + L + + +
Sbjct: 1 MADAQNRVAMGYIKGVFGIKGWLKIAADTEYADSLLDYPEWQLVKDGKTVAVSLEGGKVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ SA LR + R+ F E E E++ DL M D+
Sbjct: 61 NGELQVKFEGINDRDSAFSLRGYTIEIPREAFAPTE--EGEYYWADLVGMTVTDKDNTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L + + LIPF V V+ I+ D GL+
Sbjct: 119 GKVSSLMETGANDVLVVDGEYGQ-ILIPFVSQYVETVDAGSKTIIAD---WGLD 168
>gi|308274698|emb|CBX31297.1| Ribosome maturation factor rimM [uncultured Desulfobacterium sp.]
Length = 170
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------SNDNRELRILKMY 54
M K + + I HG++G + I SY+ + RI
Sbjct: 1 MSK-KGFLPIGKIVNAHGIHGAMKIYSYSGTFSAFETGNTLCIKNDPDSAGSSYRIKWSA 59
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
++ + F GID+ A L+ +L+ ++ LE+ ++ D+ + + G
Sbjct: 60 LHSRFILVEFEGIDSRVLAQSLKGYELFIEKAKLPR--LEDKTYYWDDIIGLNVYTADGD 117
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ G + + G+ + +K EK LIP + VL+++L I +
Sbjct: 118 FLGVIESIIQTGSNDVYVVK-NEEKEVLIPALESVVLDIDLDCKTIKVKLPEGL 170
>gi|294011043|ref|YP_003544503.1| 16S rRNA processing protein RimM [Sphingobium japonicum UT26S]
gi|292674373|dbj|BAI95891.1| 16S rRNA processing protein RimM [Sphingobium japonicum UT26S]
Length = 159
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A I HG+ GEV + + L Y + R L + + +A F
Sbjct: 3 DKPVTLAVIIGAHGVTGEVRLKLFGEGAETLKSYGGFDAAGRTLTLKSVRPGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + +A LR +L R L E E+++ DL ++ F +G+ G V V N
Sbjct: 63 AEVGDRSAAEALRGTELTVPRSALP--PLGEGEYYHADLIDLPCFSSEGEGLGHVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+E++ K F+ P V + + + +++
Sbjct: 121 FGAGDIIEVERPNGKRFMAPMHA-----VTIADGRAVVE 154
>gi|222632582|gb|EEE64714.1| hypothetical protein OsJ_19570 [Oryza sativa Japonica Group]
Length = 644
Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYV----LYSNDNRELRILKMYRK- 56
LV++ + HG+ G+V + + P R++ +E +++
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRP--KMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI------------------KNTMEKTFLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDPIAAGLNNTTMKNP 177
++ I P L +
Sbjct: 254 SREMWITPPKGLLELNARSDK 274
>gi|51473542|ref|YP_067299.1| 16S rRNA-processing protein [Rickettsia typhi str. Wilmington]
gi|59798673|sp|Q68X25|RIMM_RICTY RecName: Full=Ribosome maturation factor rimM
gi|51459854|gb|AAU03817.1| 16S rRNA processing protein RimM [Rickettsia typhi str. Wilmington]
Length = 165
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L + ++RI + + K
Sbjct: 1 MNSLENLILIGIIKSCHGIQGHVILRSFTEPATKILERNLVNESGADIRIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + D+ K G++
Sbjct: 61 LICTFNDITTRNEAENLKGYKIFCLRTSLP--ELEEDEFYIADLNHLRILDQYNKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFLDKTTKLLPFNKEFFPTI 152
>gi|300780919|ref|ZP_07090773.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
gi|300532626|gb|EFK53687.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
Length = 169
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
+ + + +HG+ GEV ++ A++ + + R+L I + KR +
Sbjct: 3 IRIGRVVKSHGVRGEVVVEPLADDEDIFFAEGEVLHGRQTGKERDLTIKSVRPHQKRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR--QGKYWGQVC 120
TF + + +A LR ++ +A+ + + + DE+++ +L ++ G + G+V
Sbjct: 63 TFEEVADRTAADSLRGMQFFAEPLERDE---DSDEYYDHELIGLKVLLDHAGGTHIGEVT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GV +LE+ + K L+PF V E++L E ++I P L
Sbjct: 120 GVMTMPNRKLLEV-DYHGKEVLVPFVMDIVPEIDLDEGYLVITPPEGLLE 168
>gi|227875956|ref|ZP_03994079.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35243]
gi|227843488|gb|EEJ53674.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35243]
Length = 196
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 16/194 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
V +AT+G G+ GE+ + +NP + D+ L + + K F+A+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNPHTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFVAS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE------------FFNTDLEEMETFDR 111
F I + +A L +KL + DE F+ +L + +
Sbjct: 63 FKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQTQ 122
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+ G V + A +LE+ LIPF V EV+L ++++ P +
Sbjct: 123 TGESLGMVSDLIIGTAQDLLEVTTADGHKVLIPFVFELVPEVDLAAGRVVMAPPGGLFPD 182
Query: 172 TTMKNPQYDCPLDS 185
T D S
Sbjct: 183 GTQSKQAEDSDGTS 196
>gi|154498109|ref|ZP_02036487.1| hypothetical protein BACCAP_02090 [Bacteroides capillosus ATCC
29799]
gi|150273099|gb|EDN00256.1| hypothetical protein BACCAP_02090 [Bacteroides capillosus ATCC
29799]
Length = 167
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+K + I THG+ GEV I + ++P L ++ + D + +RI +AT
Sbjct: 3 NKFLEAGQIVNTHGVQGEVKIVPWCDSPEFLCQFDVLYIDGQPVRIRSSRVHKGNVLATL 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVY 123
G+ ++++A L+ K+ R EL + F DL +E D + G++ +
Sbjct: 63 EGVSDVNAAMRLKGKKVSIDRT---GVELPDGRHFLADLMGLEVRDADTDEVLGEIKDIL 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A + +K ++LIP + E N++ I + I
Sbjct: 120 TPPAHEVYVVKGGAH-SYLIPAVDEFLKETNVEGGYIRVHLIEGM 163
>gi|160915185|ref|ZP_02077398.1| hypothetical protein EUBDOL_01193 [Eubacterium dolichum DSM 3991]
gi|158432984|gb|EDP11273.1| hypothetical protein EUBDOL_01193 [Eubacterium dolichum DSM 3991]
Length = 166
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 9/170 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
++K + + + THGL GEV + ++ + Y+ +EL ++
Sbjct: 1 MEK-IKIGILTNTHGLRGEVKVKITSDFWEERFAKNAVLYIDVDGHTKELCVVNARLHKG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F D+I+ + LY ++ EL EDE + ++ D G G
Sbjct: 60 MLIVKFKDYDDINQVEHWKGNALYIFKEQL--HELNEDEAYYHEMMNARVQDIDGNEIGT 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + GA +L ++ ++ FLIPF K V + ++ + + +
Sbjct: 118 VVELIETGANLVLRVRG-EKREFLIPFVKAFVTMFDKEKKIMQVTMMEGL 166
>gi|313668922|ref|YP_004049206.1| 16S rRNA processing protein [Neisseria lactamica ST-640]
gi|309379004|emb|CBX22457.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006384|emb|CBN87847.1| putative 16S rRNA processing protein [Neisseria lactamica 020-06]
Length = 169
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS--NDNRELRI--LKMYRK 56
M V M I G+ G + I + L Y + D + + +
Sbjct: 1 MADAQNRVAMGYIKGVFGIKGWLKIAADTEYADSLLDYPEWQLVKDGKTVAVSLEGGKVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ SA LR + R+ F E E E++ DL M ++
Sbjct: 61 NGELQVKFEGINDRDSAFSLRGYTIEIPREAFAPTE--EGEYYWADLVGMTVANKDNTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L + + LIPF V V+ I+ D GL+
Sbjct: 119 GKVSSLMETGANDVLVVDGEYGQ-ILIPFVSQYVETVDAGSKTIIAD---WGLD 168
>gi|256832219|ref|YP_003160946.1| 16S rRNA processing protein RimM [Jonesia denitrificans DSM 20603]
gi|256685750|gb|ACV08643.1| 16S rRNA processing protein RimM [Jonesia denitrificans DSM 20603]
Length = 184
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 8/169 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + TIG HGL+GEV + + P + + D L + + R+ T
Sbjct: 3 LKIGTIGKAHGLHGEVSVIVTTDVPQERFVPGHKIATQPADRGPLTVTRQRAHQDRWYVT 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F I + A R ++L + D E+D ++ +LE +E G G+V G+
Sbjct: 63 FEEIPDRTVAESYRGVELVIE----VDHSDEDDAWYPHELEGLEVRRLSGARVGRVAGLE 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
A L I + +PF K V V++ ++IDP L
Sbjct: 119 PLPAQDALIIDEDGGERVYLPFLKIFVPTVDVAGGYVVIDPPGGLLTED 167
>gi|296129319|ref|YP_003636569.1| 16S rRNA processing protein RimM [Cellulomonas flavigena DSM 20109]
gi|296021134|gb|ADG74370.1| 16S rRNA processing protein RimM [Cellulomonas flavigena DSM 20109]
Length = 188
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 7/189 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A IG HGL GEV +D + P D R L I ++ R+
Sbjct: 2 LLTVARIGRAHGLRGEVALDVRTDAPEDRLVVGARIATQPASAGPLEIARVREAQGRWYV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCG 121
TF + +A LR + L D + +E + ++ L + G+ G+V G
Sbjct: 62 TFVQATDRTAAEALRGVALVVDSDDDEADEDDA--WYPHQLVGLRAEHAADGRLLGEVVG 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ + A +L ++ L+PF V V++ ++++DP L D
Sbjct: 120 LEHLPAHDVLVLREADGARTLVPFVAAIVPVVDVAGGRVVLDPPGGLLAADAANLVVSDE 179
Query: 182 PLDSAGKKS 190
+ G +
Sbjct: 180 TRGAPGGEG 188
>gi|269468481|gb|EEZ80142.1| 16S rRNA processing protein RimM [uncultured SUP05 cluster
bacterium]
Length = 190
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
K +L+ I G+ G V + S+ N ++ Y + + + L I+K + K +
Sbjct: 28 KRLLVGKINGLFGIQGWVKVFSHTNPRKNILSYQPWHIEVNGQWQTLDIIKGREQGKTLV 87
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A + ++ A + +Y + +L + E++ DL + +++ G+V G
Sbjct: 88 AQIKDVHDMDQARTFIGIDIYINKSQLP--KLNKGEYYWEDLIGLNVINQEKIVLGKVSG 145
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+ S+L + K +P+ + ++ V++ + +I++D
Sbjct: 146 LVDTGSNSVLVV--NGRKEHWVPYIEPFLISVDIDKQQIVVD 185
>gi|116689093|ref|YP_834716.1| 16S rRNA-processing protein [Burkholderia cenocepacia HI2424]
gi|209573547|sp|A0K5P6|RIMM_BURCH RecName: Full=Ribosome maturation factor rimM
gi|116647182|gb|ABK07823.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia HI2424]
Length = 225
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI++
Sbjct: 48 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 SDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|318042836|ref|ZP_07974792.1| 16S rRNA-processing protein RimM [Synechococcus sp. CB0101]
Length = 205
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 27/207 (13%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LR 49
M + +L+++ + GL GE+ ++ ++ P R L R +
Sbjct: 1 MAEEQELLVVGRVVAAQGLRGELRVNPLSDFPERFTRPGRRWLRPAQGRRGEAAEATAVE 60
Query: 50 ILKMYRKNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
+L + + F+ G+++ SA L +L D +L EF DL +E
Sbjct: 61 LLSGRQLPGKELFVIRLEGVNDRSSAEALVGQELLVPAADRP--KLARGEFHLLDLVGLE 118
Query: 108 TFDRQGKY----------WGQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQ 156
+G G V + + G +LE++ + IPF K V EV L+
Sbjct: 119 VRLLEGSDVETMAQTGRCIGTVKDLIHAG-NDLLEVELTSGGAPLWIPFVKAIVPEVQLE 177
Query: 157 ENKILIDPIAAGLNNTTMKNPQYDCPL 183
I I P L + + Q +
Sbjct: 178 AGWIGITPPPGLLELGQVSDDQPEDAE 204
>gi|88811737|ref|ZP_01126991.1| 16S rRNA processing protein RimM [Nitrococcus mobilis Nb-231]
gi|88791128|gb|EAR22241.1| 16S rRNA processing protein RimM [Nitrococcus mobilis Nb-231]
Length = 173
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 9/163 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFI 61
+ +++ I +G+ G V I SY + Y V + + R K ++
Sbjct: 10 RRIIIGRIVGAYGVLGWVKIRSYTRPQQGVFEYHQWLVGRPGQWQPAELADWRRHGKSWL 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A G+ A + R L E++ DL + +G G+V
Sbjct: 70 AKLEGVAGRDQARARTGCDIAIPRALLP--PLPAGEYYWADLIGLRVQTLEGVELGRVDH 127
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
+ GA +L + ++ LIPF V+ V+L I +D
Sbjct: 128 LLETGANDVLVV--IGDRERLIPFVPGRDVVMVDLDAALIRVD 168
>gi|332976867|gb|EGK13690.1| 16S rRNA-processing protein RimM [Psychrobacter sp. 1501(2011)]
Length = 176
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
D L+ + + +G+ G +++ S + + Y + + + L + + ++
Sbjct: 7 DSLMKIGQLKKPYGIKGWLWVFSETEDREAIFSYSPWWMKTATGFKPLTVTEWRKQGTGI 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A F + + + A + + ++ + E EDE++ +DL + ++Q + G +
Sbjct: 67 VAQFEQVPDRNIAETMNGVSIWIDKDSLP--ETGEDEYYWSDLVGLSVINKQQECLGTIK 124
Query: 121 GVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
++ GA I+++ + ++ +IP+ K V V+L ++++D
Sbjct: 125 ELFETGAHPIMKVVPSKDSIDDEPRMIPWHKQTVDVVDLAAGQMIVD 171
>gi|254513965|ref|ZP_05126026.1| 16S rRNA processing protein RimM [gamma proteobacterium NOR5-3]
gi|219676208|gb|EED32573.1| 16S rRNA processing protein RimM [gamma proteobacterium NOR5-3]
Length = 172
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS----NDNRELRILKMYRKNKRFIA 62
++L I +G+ G V + ++ + P + + + ++ + K IA
Sbjct: 1 MLLAGKITGAYGIKGWVKLHAFTDPPQNFFAFSRHQIERQGRTESIQFADGRAQGKGLIA 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGK--YWGQV 119
G+D+ A LR +++ +++ EL D+++ L+ ++ + +G+ G V
Sbjct: 61 RVVGVDSRTDAELLRGTQIWVPKEELP--ELGPDDYYWHQLQGLQVWSQHEGQSLLLGVV 118
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFT-KFAVLEVNLQENKILI 162
+ GA +L ++ + LIP+ V ++++ + +
Sbjct: 119 DHLLETGANDVLVLRPCDGSIDKRERLIPYLPDDVVQGIDIEAGSMTV 166
>gi|296112616|ref|YP_003626554.1| 16S rRNA processing protein RimM [Moraxella catarrhalis RH4]
gi|295920310|gb|ADG60661.1| 16S rRNA processing protein RimM [Moraxella catarrhalis RH4]
gi|326560876|gb|EGE11241.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 7169]
gi|326563886|gb|EGE14137.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 46P47B1]
gi|326566558|gb|EGE16704.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 12P80B1]
gi|326566895|gb|EGE17034.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 103P14B1]
gi|326569775|gb|EGE19825.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC8]
gi|326570806|gb|EGE20831.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC1]
gi|326571619|gb|EGE21634.1| 16S rRNA processing protein RimM [Moraxella catarrhalis BC7]
gi|326575102|gb|EGE25030.1| 16S rRNA processing protein RimM [Moraxella catarrhalis CO72]
gi|326576812|gb|EGE26719.1| 16S rRNA processing protein RimM [Moraxella catarrhalis 101P30B1]
gi|326577735|gb|EGE27611.1| 16S rRNA processing protein RimM [Moraxella catarrhalis O35E]
Length = 185
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDN-RELRILKMYRKNKRF 60
+++ +AT+ +G+ G +++ S + + + + + + + L + + +
Sbjct: 16 SEMIKIATLKKPYGIKGWLWVFSQTDERASIFQMQPWWMKTATGFKPLTVKDWRIQGQGL 75
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A F+ + + + A + ++ + +L +DE++ +DL + + Q + G +
Sbjct: 76 VACFNEVPDRNVAETMNGTSIWVCKDHLP--KLADDEYYWSDLIGLTVMNEQAENLGVIK 133
Query: 121 GVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILI 162
++ GA I+ +K T + LIP+ VL V+L +L+
Sbjct: 134 EMFETGAHEIISLKPTAQSIDNEPRLIPWHSDVVLSVDLSAGTMLV 179
>gi|213964701|ref|ZP_03392901.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
gi|213952894|gb|EEB64276.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
Length = 169
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-----LYSNDNRELRILKMYRKNKRF 60
+VL+ + HG+ GEV +D+ ++P + + +L + R
Sbjct: 5 DMVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTTLLGVQAGREEQLTVKTARPHQGRL 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F I + A R +K YA+ E+++F++ +L + G G+V
Sbjct: 65 LVRFEEIPGRNEAERHRGMKFYAE------PVFEDEDFYDFELVGLHVV-HNGTDIGEVT 117
Query: 121 GVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A +LE+ + + LIP + V EV+L+ + + I P L
Sbjct: 118 SIVRAPAHRLLEVTLDAGGREVLIPLVEEIVPEVDLENSTVTITPPEGLLE 168
>gi|150021669|ref|YP_001307023.1| 16S rRNA processing protein RimM [Thermosipho melanesiensis BI429]
gi|172048673|sp|A6LNY7|RIMM_THEM4 RecName: Full=Ribosome maturation factor rimM
gi|149794190|gb|ABR31638.1| 16S rRNA processing protein RimM [Thermosipho melanesiensis BI429]
Length = 178
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNREL---RILKMYRKN 57
L V +A +G THGLNGE+ + N P L +Y+ ++L RI+ M N
Sbjct: 9 LKDKVPIAVLGKTHGLNGELRLFPLTNMPEVIESLEEVFIYNEKVKKLLIGRIIHMSLAN 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+I F GID ++ A + LY ++ L DE++ ++ M+ +D +G + G
Sbjct: 69 GYYIVKFRGIDTLNDAKKFVGSTLYIEKSRLPI--LSSDEYYFYEVIGMKVYDEKGIFLG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V G+ + I + LIP K VL+++ + NKI++ + L+
Sbjct: 127 NIDEVIQTGSNDVFVINKDTKDEILIPVIKEYVLQIDKKSNKIVVK-LPEWLD 178
>gi|254245968|ref|ZP_04939289.1| RimM protein [Burkholderia cenocepacia PC184]
gi|124870744|gb|EAY62460.1| RimM protein [Burkholderia cenocepacia PC184]
Length = 226
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI++
Sbjct: 49 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTH 108
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 109 SDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 166
Query: 117 GQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 167 GKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 221
>gi|283852124|ref|ZP_06369398.1| 16S rRNA processing protein RimM [Desulfovibrio sp. FW1012B]
gi|283572514|gb|EFC20500.1| 16S rRNA processing protein RimM [Desulfovibrio sp. FW1012B]
Length = 197
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 13/177 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-------SNDNRELRILKMYRKN 57
DK +++ +G HG+ GE+ I+S+A++P R L ++ +
Sbjct: 4 DKYIIVGDVGRPHGIRGELGINSHADSPSYFARGALLRLSPPADPGRGKDYVVRAARPHQ 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY-- 115
R + T G+ + ++A LR L + + E F +L + +
Sbjct: 64 GRILVTLDGVSDRNAAEALRGLAVCVPVSKLDPP--DPGEVFLHELLGLRVRLAGAQPAD 121
Query: 116 --WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + G + I++ + L P V +++L+ +IDP L
Sbjct: 122 PDLGVLEDVRDSGGAELWIIRDAKGREILFPAADELVPDLDLEARIAVIDPPPGLLE 178
>gi|269977897|ref|ZP_06184851.1| 16S rRNA processing protein RimM [Mobiluncus mulieris 28-1]
gi|306819236|ref|ZP_07452947.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35239]
gi|269933863|gb|EEZ90443.1| 16S rRNA processing protein RimM [Mobiluncus mulieris 28-1]
gi|304648018|gb|EFM45332.1| 16S rRNA processing protein RimM [Mobiluncus mulieris ATCC 35239]
Length = 196
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 16/194 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
V +AT+G G+ GE+ + +NP + D+ L + + K F+A+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNPHTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFVAS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE------------FFNTDLEEMETFDR 111
F I + +A L +KL + DE F+ +L + +
Sbjct: 63 FKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQTQ 122
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+ G V + A +LE+ LIPF V EV+L ++++ P +
Sbjct: 123 TGESLGMVSDLIIGTAQDLLEVTTAEGHKVLIPFVFELVPEVDLAAGRVVMAPPGGLFPD 182
Query: 172 TTMKNPQYDCPLDS 185
T D S
Sbjct: 183 GTHSKQAEDSDGTS 196
>gi|125623777|ref|YP_001032260.1| 16S rRNA-processing protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|166226447|sp|A2RJS5|RIMM_LACLM RecName: Full=Ribosome maturation factor rimM
gi|124492585|emb|CAL97530.1| 16S rRNA processing protein rimM [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070546|gb|ADJ59946.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 171
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRK 56
++ + TI T GL GEV I + + L+ + + ++L++ +
Sbjct: 1 MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ F G +I+ + + + +++ EEL + EF+ ++ + +D
Sbjct: 61 KNFYVVKFEGFYHINDVEKYKGYVVKIAQEN--QEELNDGEFYYHEIIGSDVYDND-ILI 117
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ VL+V++ ++++ +D I GL++
Sbjct: 118 GQISEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVD-IMEGLDD 171
>gi|307700242|ref|ZP_07637283.1| 16S rRNA processing protein RimM [Mobiluncus mulieris FB024-16]
gi|307614624|gb|EFN93852.1| 16S rRNA processing protein RimM [Mobiluncus mulieris FB024-16]
Length = 196
Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 16/194 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
V +AT+G G+ GE+ + +NP + D+ L + + K F+A+
Sbjct: 3 VTVATLGRASGVRGEIRVALRTDNPHTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFVAS 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE------------FFNTDLEEMETFDR 111
F I + +A L +KL + DE F+ +L + +
Sbjct: 63 FKEIPDRDTAETLGGVKLVIETDPEATNPPGSDETPGATESGSEDGFYRHELVGLSAQTQ 122
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G+ G V + A +LE+ LIPF V EV+L ++++ P +
Sbjct: 123 TGESLGMVSDLIIGTAQDLLEVTTADGHKVLIPFVFELVPEVDLAAGRVVMAPPGGLFPD 182
Query: 172 TTMKNPQYDCPLDS 185
T D S
Sbjct: 183 GTQSKQAGDSDGTS 196
>gi|170732381|ref|YP_001764328.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia MC0-3]
gi|209573546|sp|B1JXU4|RIMM_BURCC RecName: Full=Ribosome maturation factor rimM
gi|169815623|gb|ACA90206.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia MC0-3]
Length = 225
Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI++
Sbjct: 48 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 SDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|307609207|emb|CBW98671.1| hypothetical protein LPW_04801 [Legionella pneumophila 130b]
Length = 169
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRK 56
M V++ G HG+ G V + S+ + ++ RY V + + +++L + +
Sbjct: 1 MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPVKLLTIEVR 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+K IA G S L +L + + L E++ L M + +G +
Sbjct: 61 SKAIIAQIEGYPERELVSALTNLDIGVQESQLAA--LAPGEYYWYQLIGMSVINSKGDLF 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
G+V + G+ +L ++ EK LIP+ V+ ++ + I +D
Sbjct: 119 GKVVEIMPTGSNDVLVVE--GEKRHLIPYLPGQFVINIDESQQIITVD 164
>gi|304316923|ref|YP_003852068.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778425|gb|ADL68984.1| 16S rRNA processing protein RimM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 166
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKR 59
+D + + I + +G+NGEV + ++ Y+ L + +
Sbjct: 1 MDDYLSVGKITSAYGVNGEVKVFPLTDHLDRFYDLDYVYIFEETGKTSLNVETVRFIKNL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F I++ + A +L+ + KR + +L++DE+F DL M+ + K G +
Sbjct: 61 VIVKFKEINDRNEAEKLKGKLIKIKRDN--AVKLDDDEYFIKDLLNMKVYTDDQKELGIL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V GA + +K E+ LIP K + +V+++E K+ + +
Sbjct: 119 KDVLKTGANDVYVVKT-DERDILIPAIKDVIKKVDIKERKMTVHLLEGL 166
>gi|288574572|ref|ZP_06392929.1| 16S rRNA processing protein RimM [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570313|gb|EFC91870.1| 16S rRNA processing protein RimM [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 177
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 11/178 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNR-----ELRILKM 53
+K D LV + + HG+ GE + + P LY R + ++
Sbjct: 1 MKGDDLVEVGKVIAPHGVKGEFKVFPLTDFPDRFESMDELNLYDGKGRFIKAVPISSVRF 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-Q 112
+ T I + A LR L + + +D L E E++ DL + D
Sbjct: 61 RPDKGEVMITSPKICDRDEAESLRGLLIKVSKDQRRD--LPEGEYWIDDLIGLSVIDEGS 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ G +C V G + +K + +IP V V++ + + I +
Sbjct: 119 GETIGTLCDVMVTGGSDVYTVKRPDGRNMMIPAVGEYVSSVDIASGVLKVKNIEGLRD 176
>gi|154509170|ref|ZP_02044812.1| hypothetical protein ACTODO_01691 [Actinomyces odontolyticus ATCC
17982]
gi|153798804|gb|EDN81224.1| hypothetical protein ACTODO_01691 [Actinomyces odontolyticus ATCC
17982]
Length = 170
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPI--DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
A +G HGL GEV +D +++P + + D R L + + R +A+F
Sbjct: 6 AIVGPAHGLRGEVIVDVRSDDPEVMAPGSRLDIAGDQRSLTVRTVRVHKDRVLASFEECV 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A LR +L D EED ++ +L+ ++ G G V G+ A
Sbjct: 66 TREDAEALRGARLLV------DAHPEEDAWYPHELKGLQARTPSGDVLGSVSGLTPGAAQ 119
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
+L + T L+PF V V+++ ++ID ++ + + D
Sbjct: 120 DLLLVATDRG-TVLVPFVTALVPTVDVEGGFVVIDAPPGLFDDDAVSEREGD 170
>gi|118594350|ref|ZP_01551697.1| 16S rRNA processing protein RimM [Methylophilales bacterium
HTCC2181]
gi|118440128|gb|EAV46755.1| 16S rRNA processing protein RimM [Methylophilales bacterium
HTCC2181]
Length = 167
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNREL---RILKMYRKNKR 59
D +V+M I HG+ G + + + L+ Y L S D + ++ K+K
Sbjct: 3 DDVVIMGKIVGPHGIKGWLKVHPFTEEIGTLSNYPQWLISKDEKHWVGHKVETATVKDKT 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ GID+ + + + + +++ +L+ D ++ +DL ++ + G Y+G +
Sbjct: 63 LLVKLVGIDDRNGSDSVNKNMVGILKEELP--KLDADTYYWSDLIGLDVQNEAGYYFGSI 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ ++ IK E+ FLIP+ +++V+L+ K+L+D
Sbjct: 121 QTMMETGSNDVMVIK--GEREFLIPYLPDVIIKVDLEAKKVLVD 162
>gi|299532546|ref|ZP_07045936.1| 16S rRNA-processing protein RimM [Comamonas testosteroni S44]
gi|298719493|gb|EFI60460.1| 16S rRNA-processing protein RimM [Comamonas testosteroni S44]
Length = 189
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMY 54
+ + I G+ G + ++++ P L + L + L + +
Sbjct: 15 DAIEVGRIADAWGIKGWFKVHAFSSAPEALFAAKDWFLQPAEKGAKHFTGTVVLPVKQAR 74
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+AT + + ++A LR +++ R+ F + E+ EF+ DL + +R+G
Sbjct: 75 FHADTIVATSLEVADRNAAEALRGARVFVAREHFP--KTEDGEFYWVDLMGLNVVNREGV 132
Query: 115 YWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 133 TLGVVKDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 184
>gi|73667543|ref|YP_303559.1| 16S rRNA processing protein RimM [Ehrlichia canis str. Jake]
gi|109893014|sp|Q3YQP4|RIMM_EHRCJ RecName: Full=Ribosome maturation factor rimM
gi|72394684|gb|AAZ68961.1| 16S rRNA processing protein RimM [Ehrlichia canis str. Jake]
Length = 173
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR--ILKMYRKNKRFIA 62
+ L+ + I ++HG++G V I ++ +P D Y + ++ + I+ + +N
Sbjct: 3 NDLICLGVITSSHGISGHVKIRTFTESPEDFTSYGMLTDGTNTYKISIVSVISQNIIIAK 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ + + + A LR+ KL+ ++ + DEF++ DL + K +G + +
Sbjct: 63 IKNIV-SRNDADLLRNKKLFIEKDKLPNLT-NNDEFYHNDLIGLNVILENNKVYGNIKKI 120
Query: 123 YNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+NFG+ I+EI + +K+ ++PFTK +N++E I+I+
Sbjct: 121 HNFGSCDIIEICLSNSKKSTMLPFTKNIFPYINIKEKYIIINLPE 165
>gi|284928664|ref|YP_003421186.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
gi|284809123|gb|ADB94828.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
Length = 195
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKM-----YR 55
+D ++ + TI GL GE+ + S + P + + + L+ +K+
Sbjct: 10 IDNMLKIGTIVGPRGLKGELKVLSSTDFPERFEISEEHWISDPNKSTLQSVKLISSRYVM 69
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +I GI+ + A LR+ KL+ EL++DE+ + L +E + ++ K
Sbjct: 70 EKNIYIVRLQGIETRNQAELLRNYKLFISNHSIP--ELKKDEYHISQLINLEVYHQKTKK 127
Query: 116 W-GQVCGVYNFGAGSILEI--------KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G V V+ G +LEI ++ ++ FL+PF V V+L +I ++P
Sbjct: 128 LIGIVTDVFTTG-HDLLEIELENPSLPESDKKQKFLVPFVYEIVPIVDLVNRRIELNPPK 186
Query: 167 AGLN 170
L+
Sbjct: 187 GLLD 190
>gi|325524025|gb|EGD02210.1| 16S rRNA-processing protein RimM [Burkholderia sp. TJI49]
Length = 225
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G + + ++A+ + R+ L R RI++
Sbjct: 48 PDDAVEVGAVVDAYGLKGWLKVAAHADAGRGGDALLKARRWWLEKGAQRFSARIMQSKTH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + +A LR +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 GDTVVAQTAGVSDRDAALALRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + A SI+ ++ + LIPF V V+ +I++D
Sbjct: 166 GKVAGMIDNSAHSIMRVEYPAVGKDGRPVTAERLIPFVGVYVKTVDQAARRIVVD 220
>gi|206561262|ref|YP_002232027.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia J2315]
gi|198037304|emb|CAR53226.1| 16S rRNA processing protein [Burkholderia cenocepacia J2315]
Length = 226
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI++
Sbjct: 49 PDDAVEVGAVVDAYGLKGWVKVAAHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTH 108
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 109 SDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 166
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 167 GKVSGMIDNGVHSIMRVEYPATGKDGRPTTDERLIPFVGVYVKTVDQAARRIVVD 221
>gi|257095639|ref|YP_003169280.1| 16S rRNA processing protein RimM [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048163|gb|ACV37351.1| 16S rRNA processing protein RimM [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 190
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSND-----NRELRILKMYRKNKR 59
+++ I +G+ G + + +A++P L + L S ++ R+LK N
Sbjct: 24 IVLGKIVAPYGVQGALRVCPFADDPSGWSRLTHWWLASEGDAPEAWQQTRLLKCRLHNDM 83
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA +G+ + +A + R E++ DL + + +G+ G++
Sbjct: 84 LIAELAGVVDRTAAEASCGKLVGVPRAALPPT--AAGEYYWADLVGLAVINSRGESLGRI 141
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ + A +++ + + + L+PF VL V+L + +D
Sbjct: 142 IGLLDTPANAVMRVGDGQQGERLLPFVAAVVLAVDLPGRFVRVD 185
>gi|293400510|ref|ZP_06644655.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305536|gb|EFE46780.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 167
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
+ + + THGL GEV + + ++ Y ++ + + I
Sbjct: 4 INIGILVNTHGLRGEVKVKPTTDFVDIRFAKGKHIHIQYQQQLLDVCVEYAKWAKQLLIV 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F+G D+I+ + L + LEEDE + +L++ + D +G+Y G V V
Sbjct: 64 KFAGYDDINQVEAWKGSLLSISEEQLHA--LEEDEAYFFELQDCQVLDEEGRYLGDVIEV 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
A +IL ++ E+ FL+P+ K V + +E I+I + L
Sbjct: 122 LETNANAILRVR-NEEREFLVPYVKAFVQDFKREEKCIVIKLMDGLL 167
>gi|119511287|ref|ZP_01630402.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
gi|119464078|gb|EAW45000.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
Length = 223
Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 26/192 (13%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND--NRELRILKMY- 54
LD+ + + I GL+GE+ + ++ P R++ + D + + +L
Sbjct: 31 PNLDEWLEIGKIVAPQGLSGELRVYPESDFPERFEVPGTRWLWHPGDREPQPVELLSGRY 90
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
+ K I + +G+ N + A LRD KL D +L EDE+ TDL M F ++
Sbjct: 91 VEGKNLCIISLAGVRNRNDAEALRDYKLMVPASDRP--QLGEDEYHVTDLIGMLVFMQES 148
Query: 113 GKYWGQVCGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQEN 158
G+ G+V V G +LE+K K LIPF K V+L
Sbjct: 149 GELVGEVVDVIPAG-NFLLEVKLHQQIPDVESETLQPQSPKKLLIPFVKAIAPVVDLPSR 207
Query: 159 KILIDPIAAGLN 170
+I I P L
Sbjct: 208 RIEITPPPGLLE 219
>gi|300865592|ref|ZP_07110369.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
gi|300336407|emb|CBN55519.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
Length = 210
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 49/213 (23%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRIL----KMYR 55
+ V + TI GLNGEV + ++ P R++ I +
Sbjct: 1 MSDWVEIGTIVAPQGLNGEVRVYPNSDFPERFLEPGQRWMQRPGKAEPEPIEFLGGRYIP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
+ +G++NI A LR +L+ D LEE EF+ DL ++ F +Q G+
Sbjct: 61 GKGIYAVQLAGVENIDEAEALRGCQLFVSASDRP--HLEEGEFYVRDLIGLQVFYQQTGE 118
Query: 115 YWGQVCGVYNFGAGSILEIKNTME------------------------------------ 138
G V + G ILE++ +
Sbjct: 119 MLGTVVDIIPAG-NDILEVELQQKPEPANILEEESATGQVATHPSQRRSKKQKERPLKSK 177
Query: 139 -KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
KT LIPF + V V + + +I I P L
Sbjct: 178 SKTVLIPFVQEIVPIVEIGQRRIEITPPPGLLE 210
>gi|307823516|ref|ZP_07653745.1| 16S rRNA processing protein RimM [Methylobacter tundripaludum SV96]
gi|307735501|gb|EFO06349.1| 16S rRNA processing protein RimM [Methylobacter tundripaludum SV96]
Length = 168
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIAT 63
+ + I G+ G V + S+ + ++ Y + ++ + + ++ + K +A
Sbjct: 7 ISVGKISGVFGIKGWVKVFSFTDPRENILTYSPWLLKKGDETKTVNVVDGQLQGKTIVAQ 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ +++ A+ L ++ + + E++ +DL + G G V +
Sbjct: 67 LTDVNDRDQAASLMGWDIFITQDQLPKA--AKGEYYWSDLIGLNVETIDGVQLGVVDSLL 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
GA ++ ++ E+ +IPF + ++ V+L KI++D
Sbjct: 125 ETGANDVIIVQ--GERERVIPFLQGQTIINVDLDAGKIVVD 163
>gi|331266167|ref|YP_004325797.1| 16S rRNA processing protein RimM [Streptococcus oralis Uo5]
gi|326682839|emb|CBZ00456.1| 16S rRNA processing protein RimM [Streptococcus oralis Uo5]
Length = 172
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + D + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEDRFKKGAELALFDEKDQFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDL--NSLDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVDILEGLDDED 172
>gi|152997770|ref|YP_001342605.1| 16S rRNA processing protein RimM [Marinomonas sp. MWYL1]
gi|209573568|sp|A6W1U1|RIMM_MARMS RecName: Full=Ribosome maturation factor rimM
gi|150838694|gb|ABR72670.1| 16S rRNA processing protein RimM [Marinomonas sp. MWYL1]
Length = 181
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDN-RELRILKMYRKNKR 59
++ +++ I + +G+ G V + S+ D + L + + + + + + +
Sbjct: 10 PEQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVELSQGRLQGRG 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+A+ G + ++ + +Y + ELEE +++ + LE + ++G G+V
Sbjct: 70 LVASVKGYTDRDQVKDICGMDVYIDAAELP--ELEEGDYYWSQLEGLRVITKEGVLLGKV 127
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTK-FAVLEVNLQENKILID 163
+ GA ++ ++ + LIP+ VL ++L++ ++++D
Sbjct: 128 SQLMETGANDVIVVRACEGSFDREERLIPYAPGTYVLNIDLEQQEMVVD 176
>gi|296453527|ref|YP_003660670.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
gi|296182958|gb|ADG99839.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
Length = 204
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSHDGETEYIVEGSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G+D+ ++A L ++LY + D +D LE DE++ DL +E +G G G
Sbjct: 74 KLEGVDDRNAAEALNGVELYGEVDDAEDM-LEADEWYPKDLIGLEARLVEGNGLGLPAGQ 132
Query: 122 -------VYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ T EKT L+PF + V +++L+E +
Sbjct: 133 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEELVPDIDLEEQYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|238026560|ref|YP_002910791.1| 16S rRNA-processing protein RimM [Burkholderia glumae BGR1]
gi|237875754|gb|ACR28087.1| 16S rRNA processing protein RimM [Burkholderia glumae BGR1]
Length = 237
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNREL--RILKMYRK 56
D V + I +GL G V I +A + + R D L +I +
Sbjct: 60 PDDAVEVGAIVDAYGLKGWVKILPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLH 119
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G+ + A LR +++ +R+DF L+ DEF+ DL +E + G
Sbjct: 120 ADTVVAHPAGLADRDQALALRGYRVFVRREDFPA--LDTDEFYWVDLIGLEVVNEAGTAL 177
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + + G SI+ + + LIPF V V+ +I++D
Sbjct: 178 GRVGDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVD 232
>gi|255557441|ref|XP_002519751.1| conserved hypothetical protein [Ricinus communis]
gi|223541168|gb|EEF42724.1| conserved hypothetical protein [Ricinus communis]
Length = 631
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNR----ELRILKMYRK 56
+ V + + + HGL GE+ + + P R++ + E+ +++
Sbjct: 39 EFVEVGYLSSVHGLQGEICVKPSTDFPELRFSQPGRRWLRQQISGKDMIQEVELIEGRGY 98
Query: 57 N--KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
+ K +I F GID + A +L L + D ELEE +F+ DL M ++ G
Sbjct: 99 HGQKSWILRFDGIDTVEQARQLVGSTLLVREDDRP--ELEEGDFYTRDLVGMRVILKETG 156
Query: 114 KYWGQVCGVYNFGAGSILEI------KNTMEKT-------------FLIPFTKFAVLEVN 154
+ G V V++ GAG +L++ +PF + V +V+
Sbjct: 157 QCVGTVVNVFDSGAGDLLQVMLCPTEGVPEGTEKLMTAETGVSSPLVWVPFVEAIVPDVD 216
Query: 155 LQENKILIDPIAAGL 169
+ + ++ I P L
Sbjct: 217 MTKREMWITPPKGLL 231
>gi|157964428|ref|YP_001499252.1| 16S rRNA-processing protein RimM [Rickettsia massiliae MTU5]
gi|166985969|sp|A8F1B9|RIMM_RICM5 RecName: Full=Ribosome maturation factor rimM
gi|157844204|gb|ABV84705.1| 16S rRNA processing protein RimM [Rickettsia massiliae MTU5]
Length = 165
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVMLKSFTDPATKILERNLVNESGANIHIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R ELEEDEF+ DL + ++ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRASLP--ELEEDEFYIADLTHLPILNQDHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + + T L+P K +
Sbjct: 119 KNILNFGAGDIIEIEFSDQTTELLPCNKEFFPII 152
>gi|326388658|ref|ZP_08210251.1| 16S rRNA processing protein RimM [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206909|gb|EGD57733.1| 16S rRNA processing protein RimM [Novosphingobium nitrogenifigens
DSM 19370]
Length = 163
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-F 60
+ +D+ V +A + HG+ G+V + + L RY + + L + + K
Sbjct: 1 MSIDRPVTLAAVIGAHGVTGDVRLKLFGEGVAALKRYKAF--NGGTLTPVSLRDDGKGGA 58
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A F+ + +A +LR L R L E E+++ DL + +G+ G
Sbjct: 59 LARFAEAGDRTAAEKLRGTALTVPRSALP--PLAEGEYYHADLIGLAVVSGEGEALGTCV 116
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V NFGAG +LEI+ K F++P AVLE + ++++I
Sbjct: 117 AVDNFGAGDVLEIRRPDGKAFMVPMRPEAVLEWD--ADRLVI 156
>gi|149928268|ref|ZP_01916511.1| 16S rRNA-processing protein [Limnobacter sp. MED105]
gi|149822997|gb|EDM82239.1| 16S rRNA-processing protein [Limnobacter sp. MED105]
Length = 188
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 24/185 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYV---LYSNDN--------- 45
M D LV + IG +GL G + + + P L ++ L S++
Sbjct: 1 MNVPDDLVELGRIGEPYGLKGWINVLPSSEEPDVLLKSKQWWVSRLPSSEGAVVRRAAQP 60
Query: 46 -------RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEF 98
R+L+ + R +A GI+ A++ + ++Y R F E E+
Sbjct: 61 KFEDLVFEPFRVLQSKPHSSRIVAHLEGIEQPELAAQFKGRRVYVSRARFPAP--AEGEY 118
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ DL + +G+ G V V + GA IL +K+ E+ LIPF V+ V+ Q
Sbjct: 119 YWVDLVGCRVTNLEGRVLGTVTQVVDHGAHPILSVKSDAEQEMLIPFVAAYVVNVDTQAK 178
Query: 159 KILID 163
+I D
Sbjct: 179 QIQAD 183
>gi|320546970|ref|ZP_08041271.1| 16S rRNA processing protein RimM [Streptococcus equinus ATCC 9812]
gi|320448372|gb|EFW89114.1| 16S rRNA processing protein RimM [Streptococcus equinus ATCC 9812]
Length = 172
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + ++ + +R ++ I ++
Sbjct: 2 NYYNVGRIVNTQGLQGEMRVLSVTDFAEERFKKGSKLAVFDDKDRFLLDVEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ ELE+ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIIKFKGMYHINDIEKYKGCSLKVAEENL--SELEDGEFYYHEIIGLDVYEND-VLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ +L V++ N++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVAGNRVDVDVLEGLDDED 172
>gi|116512362|ref|YP_809578.1| 16S rRNA-processing protein [Lactococcus lactis subsp. cremoris
SK11]
gi|123125479|sp|Q02Y16|RIMM_LACLS RecName: Full=Ribosome maturation factor rimM
gi|116108016|gb|ABJ73156.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp.
cremoris SK11]
Length = 171
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRK 56
++ + TI T GL GEV + + + L+ + + ++L++ +
Sbjct: 1 MENFYKVGTIVNTQGLQGEVRVLPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ F G +I+ + + + +++ EEL + EF+ ++ + ++
Sbjct: 61 KNFYVVKFEGFYHINDVEKYKGYVVKIAQEN--QEELNDGEFYYHEIIGSDVYEND-ILI 117
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ VL+V++ ++++ +D I GL++
Sbjct: 118 GQISEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVD-IMEGLDD 171
>gi|148555570|ref|YP_001263152.1| 16S rRNA processing protein RimM [Sphingomonas wittichii RW1]
gi|209573622|sp|A5V9P8|RIMM_SPHWW RecName: Full=Ribosome maturation factor rimM
gi|148500760|gb|ABQ69014.1| 16S rRNA processing protein RimM [Sphingomonas wittichii RW1]
Length = 157
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ D+ +++A I HGL GEV + + D+ Y R + + +
Sbjct: 1 MSSDRPIVLAAIIGAHGLQGEVRLKLFT---EDMGAYRTLDGAGRSFTLKTIRPGPNGAV 57
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A F+ I + ++A LR +L R L E+++ DL + G G
Sbjct: 58 ARFAEIGDRNAAEALRGTELSVPRSALP--PLAPGEYYHVDLIGLPC-LVDGAPVGVAAM 114
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
V +FGAG +LEI+ K F++P K V ++ +++LIDP
Sbjct: 115 VEDFGAGDVLEIEKPDGKRFMVPVAKA----VTIEPDRLLIDP 153
>gi|83944835|ref|ZP_00957201.1| putative 16S rRNA processing protein [Oceanicaulis alexandrii
HTCC2633]
gi|83851617|gb|EAP89472.1| putative 16S rRNA processing protein [Oceanicaulis alexandrii
HTCC2633]
Length = 176
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK---NKRFI 61
++LV++A + HG+ G+ + + + + Y + + + + + K N I
Sbjct: 6 EELVVIAAVAGAHGVRGDAKLKPFGD-AAQVCSYGPFLDKSGAVILTPTQAKPGPNGTVI 64
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
++ L+ + EL+EDEF+ +DL + + +G+ G++
Sbjct: 65 VRLKETLTREQVQAMKGTLLHVPHSNLP--ELDEDEFYYSDLIGLNVENLEGETLGKIKS 122
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
V +FGAG +LEI + +PFTK A V+L+ K++ +P
Sbjct: 123 VQDFGAGDLLEISGPDG-VWFLPFTKDAAPHVDLKAGKLVANPPE 166
>gi|229822784|ref|ZP_04448854.1| hypothetical protein GCWU000282_00073 [Catonella morbi ATCC 51271]
gi|229787597|gb|EEP23711.1| hypothetical protein GCWU000282_00073 [Catonella morbi ATCC 51271]
Length = 177
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNREL---RILKMYRKNKRF 60
+A I T G+ G++ + + + P + Y+L +++ L ++ K +
Sbjct: 5 RVARIVNTFGIRGQLKLIADTDFPEERFASGKTLYILKDLNSQPLASVQVAKAAIHKGTW 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +F DNI+ + L + ++ E + +++ L +E +GK G++
Sbjct: 65 LISFVDYDNINQVEGFKGCWLAIDESEQEELEEDS--YYHHQLLGLEVVTLEGKTLGKIK 122
Query: 121 GVYNFGAGSILEIKN--TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
+ G+ + ++ K LIPF V V+L+ ++ ++ + +++
Sbjct: 123 EILQLGSNDVFVVQRNIPKAKDALIPFIGDVVKTVDLEAGQVKVELMEGLIDDEA 177
>gi|160900776|ref|YP_001566358.1| 16S rRNA-processing protein RimM [Delftia acidovorans SPH-1]
gi|209573576|sp|A9BNS8|RIMM_DELAS RecName: Full=Ribosome maturation factor rimM
gi|160366360|gb|ABX37973.1| 16S rRNA processing protein RimM [Delftia acidovorans SPH-1]
Length = 189
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 1 MVKLD------KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE---- 47
M +L+ V + I G+ G + +++ +P L ++ L +
Sbjct: 4 MPELEASVLPADAVEVGRIADAWGIKGWFKVAAFSADPEALFTAKQWYLQPPEKGARQFT 63
Query: 48 ----LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL 103
L + + + +AT +++ ++A LR +++ R DF E + E++ DL
Sbjct: 64 GTVLLPVKQARVHSDSVVATSPVVNDRNTAEALRGARIFVARSDFPQPE--DGEYYWVDL 121
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ +R+G G V + + G ++L + ++ E+ +IPF V +V+L I
Sbjct: 122 LGLSVVNREGVVLGVVRDLLSTGPQTVLVLAYEEDGKERERMIPFVDAYVDKVDLPGKTI 181
Query: 161 LID 163
+ D
Sbjct: 182 VAD 184
>gi|264677034|ref|YP_003276940.1| 16S rRNA processing protein RimM [Comamonas testosteroni CNB-2]
gi|262207546|gb|ACY31644.1| 16S rRNA processing protein RimM [Comamonas testosteroni CNB-2]
Length = 186
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE--------LRILKMY 54
+ + I G+ G + ++++ P L + L + L + +
Sbjct: 12 DAIEVGRIADAWGIKGWFKVHAFSSAPEALFAAKDWFLQPAEKGAKHFTGTVVLPVKQAR 71
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+AT + + ++A LR +++ R+ F + E+ EF+ DL + +R+G
Sbjct: 72 FHADTIVATSLEVADRNAAEALRGARVFVAREHFP--KTEDGEFYWVDLMGLNVVNREGV 129
Query: 115 YWGQVCGVYNFGAGSILEI---KNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + G ++L + ++ E+ LIPF V V+L KI+ D
Sbjct: 130 TLGVVKDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVAD 181
>gi|225868438|ref|YP_002744386.1| 16S rRNA processing protein [Streptococcus equi subsp.
zooepidemicus]
gi|259585652|sp|C0MEI2|RIMM_STRS7 RecName: Full=Ribosome maturation factor rimM
gi|225701714|emb|CAW99063.1| 16S rRNA processing protein [Streptococcus equi subsp.
zooepidemicus]
Length = 172
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + R L+ + +R E+ I + +
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQ 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I++ + + L ++ +L E EF+ + +E +++ + GQ
Sbjct: 62 FDIIKFKGMYHINAIEQFKGCSLKIAKEH--QGKLAEGEFYYHQIIGLEVYEKD-QLVGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRQSKRDLLLPYIPSVVLGVDIEKGRVDVE-IMEGLDDE 171
>gi|308081839|ref|NP_001183438.1| hypothetical protein LOC100501868 [Zea mays]
gi|238011556|gb|ACR36813.1| unknown [Zea mays]
Length = 661
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYR 55
++LV + + HG+ G+V + + P L RE +++
Sbjct: 91 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 150
Query: 56 K--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K +I +F G++N+ A ++ + K +D E+E+DEF++ DL M +
Sbjct: 151 HTGKKSWIVSFDGVNNLDEARQIVGSAVLVKARDRP--EIEDDEFYSLDLVGMRVIVKDT 208
Query: 113 GKYWGQVCGVYNFGAGSIL-EIKNTMEKT-----------------FLIPFTKFAVLEVN 154
GK G V V+NFG G +L I + E T IPF + V +V+
Sbjct: 209 GKLVGTVGQVFNFGGGDLLQVIMGSSEGTAVDPDSENQDSISSREHVWIPFAEDIVPDVD 268
Query: 155 LQENKILIDPIAAGLNNTTMKNP 177
+ ++ I P L + +
Sbjct: 269 MASREMRITPPKGLLELNSRSDK 291
>gi|303230165|ref|ZP_07316933.1| 16S rRNA processing protein RimM [Veillonella atypica
ACS-134-V-Col7a]
gi|303231618|ref|ZP_07318342.1| 16S rRNA processing protein RimM [Veillonella atypica
ACS-049-V-Sch6]
gi|302513735|gb|EFL55753.1| 16S rRNA processing protein RimM [Veillonella atypica
ACS-049-V-Sch6]
gi|302515091|gb|EFL57065.1| 16S rRNA processing protein RimM [Veillonella atypica
ACS-134-V-Col7a]
Length = 165
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K + + + I HG+ G++ I + P D +E + + +
Sbjct: 1 MKPNDFITIGVIIAPHGVRGDLRIMPRTDFPERFMHMDACYIDGKEYHVASARFHKQFVL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A+F I + ++A ++ +R+D EL E ++ D+ +E D +G G +
Sbjct: 61 ASFKEIPDRNAAELFAKKEIQVRREDL--VELPEGRYYIFDMIGLEVQDTEGNVLGTLTD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V GA + + E L ++++++ + +++DP
Sbjct: 119 VLQPGANDVYVVSKEGEPDQLFAAIDDVIIDIDMDKRMMIVDPPEW 164
>gi|157825607|ref|YP_001493327.1| 16S rRNA-processing protein RimM [Rickettsia akari str. Hartford]
gi|166226473|sp|A8GN44|RIMM_RICAH RecName: Full=Ribosome maturation factor rimM
gi|157799565|gb|ABV74819.1| 16S rRNA-processing protein [Rickettsia akari str. Hartford]
Length = 165
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G V + S+ + L + ++ I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHVILKSFTEPATKILAKNLVNESREDIHIQLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F+ I + A L+ K++ R E EDEF+ DL + D K G++
Sbjct: 61 LICRFNDITTRNEAENLKGYKIFCLRASLP--EPAEDEFYIADLNHLPVLDPNHKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFLDQTTELLPFNKEFFPVI 152
>gi|302389632|ref|YP_003825453.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
gi|302200260|gb|ADL07830.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
Length = 170
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDN--RELRILKMYRKNKR 59
+ + + + + G+ G+V +++ ++ + VL D + + + K
Sbjct: 1 MREYIAIGRVLAPWGVRGQVKVEALTDDVNRFRKLKSVLVEEDEALKSYVVNSVVFLKKD 60
Query: 60 FI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWG 117
F+ GID + SA LR L R+D +L E +F D+ ME + + G+ G
Sbjct: 61 FVALKLEGIDTVESAERLRGRYLMVHRKD--AVKLPEGHYFICDIIGMEVYREEDGELLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V V GA + + + L+P + V +++L+ NK+++ +
Sbjct: 119 RVRDVLKTGANDVYVVDLKGGRELLLPAIRDVVRKIDLENNKMVVKLMEGM 169
>gi|94495533|ref|ZP_01302113.1| 16S rRNA processing protein [Sphingomonas sp. SKA58]
gi|94424921|gb|EAT09942.1| 16S rRNA processing protein [Sphingomonas sp. SKA58]
Length = 159
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
DK V +A + HG+ GEV + + + P L Y + R L + + +A F
Sbjct: 3 DKPVTLAVVTGAHGVTGEVRLKLFGDGPDSLKGYGAFMAAGRTLTLKSVRAGPNGAVARF 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ I + +A LR +L R L E E+++ DL ++ G+ G V V N
Sbjct: 63 AEIGDRGAAEALRGTELTVPRSALP--PLGEGEYYHVDLIDLPCASSTGEALGTVVAVEN 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
FGAG I+E++ K F++P V L + +ID
Sbjct: 121 FGAGDIVEVQRASGKRFMVPMHA-----VTLGDGGAVID 154
>gi|119025225|ref|YP_909070.1| 16S rRNA-processing protein rimM [Bifidobacterium adolescentis ATCC
15703]
gi|154486607|ref|ZP_02028014.1| hypothetical protein BIFADO_00424 [Bifidobacterium adolescentis
L2-32]
gi|171473022|sp|A0ZZV5|RIMM_BIFAA RecName: Full=Ribosome maturation factor rimM
gi|118764809|dbj|BAF38988.1| probable 16S rRNA-processing protein rimM [Bifidobacterium
adolescentis ATCC 15703]
gi|154084470|gb|EDN83515.1| hypothetical protein BIFADO_00424 [Bifidobacterium adolescentis
L2-32]
Length = 195
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + E + R+I
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPGAVLYTKDGEEEYVVESSRTFKNRWII 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW------ 116
F GID+ ++ + LY + D +E LE DE++ DL +E +G
Sbjct: 70 KFEGIDDRDASEAANGVVLYGEADD-PEEMLEADEWYPKDLISLEARLAEGNTLGLAPGT 128
Query: 117 --GQVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V A +L+I+ E + L+PF V +++L+ + +DP
Sbjct: 129 VVGKVVDVIEV-AQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEGGYLTLDP 187
Query: 165 IAAGL 169
+
Sbjct: 188 PGGLI 192
>gi|289207613|ref|YP_003459679.1| 16S rRNA processing protein RimM [Thioalkalivibrio sp. K90mix]
gi|288943244|gb|ADC70943.1| 16S rRNA processing protein RimM [Thioalkalivibrio sp. K90mix]
Length = 169
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M + + + + + +G+ G V I S + + D R + +
Sbjct: 1 MNEAGERIRVGRVSGVYGVKGWVRIFSETEPRAAIADFPHLWLRAGADWRLVEVEAGRAH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F+ + +A L +L +R E + E++ DL M+ + G
Sbjct: 61 GHGVVMKFAETADREAAYGLMGAELAIERDWLPPAE--DGEYYWADLLGMKVEHQDGTAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
G++ G GA +L ++ ++ LIP+ + +L+V+L+ ++ +D
Sbjct: 119 GRISGFMETGANDVLVVR--GDRERLIPWVRGQYILDVDLEGRRLRVD 164
>gi|242088857|ref|XP_002440261.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
gi|241945546|gb|EES18691.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
Length = 663
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYR 55
++LV + + HG+ G+V + + P L RE +++
Sbjct: 94 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 153
Query: 56 K--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K +I +F GIDN+ A ++ + K D E+E+DEF++ DL M +
Sbjct: 154 HTGKKSWIVSFDGIDNLDEARQIVGSAVLVKAGDRP--EIEDDEFYSLDLVGMRVIVKDT 211
Query: 113 GKYWGQVCGVYNFGAGSILEI------------------KNTMEKTFLIPFTKFAVLEVN 154
GK G V ++NFG G +L++ + + IPF + V +V+
Sbjct: 212 GKVVGTVGQIFNFGGGDLLQVMIGSAEGTAVDPDSENQDSISSREHVWIPFAEDIVPDVD 271
Query: 155 LQENKILIDPIAAGLNNTTMKNP 177
+ ++ I P L + +
Sbjct: 272 MASREMWITPPKGLLELNSRSDK 294
>gi|15604216|ref|NP_220731.1| 16S rRNA-processing protein RimM [Rickettsia prowazekii str. Madrid
E]
gi|14423906|sp|Q9ZDI0|RIMM_RICPR RecName: Full=Ribosome maturation factor rimM
gi|3860908|emb|CAA14808.1| unknown [Rickettsia prowazekii]
gi|292571956|gb|ADE29871.1| 16S rRNA processing protein RimM [Rickettsia prowazekii Rp22]
Length = 165
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L L+L+ I + HG+ G V + S+ + L + +RI + + K
Sbjct: 1 MNSLKNLILIGVIKSCHGIQGHVILKSFTEPSTKILERTLVNESGANIRIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ K++ R +LEEDEF+ DL ++ D+ K G++
Sbjct: 61 LICTFNDIATRNEAENLKGYKIFCLRTSLP--KLEEDEFYIADLNHLQILDQSNKEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFLDKTTELLPFNKEFFPII 152
>gi|295396052|ref|ZP_06806236.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
gi|294971140|gb|EFG47031.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
Length = 165
Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDN--RELRILKMYRKNKRFIATFS 65
++A +G HG+ GE+ ++ ++P + D L + + R + TF
Sbjct: 4 VVARLGKPHGIRGEMTVEVRTDDPDERFTPGATFGTDPDIGTLTLTRARWHRDRLMLTFD 63
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
+ + + A E+R+ + + +ED ++ DL E G G V V
Sbjct: 64 EVPDRNRAEEIRNTLITVDVSETD----DEDAWYIDDLVGAEVV-HSGSVIGTVSAVTPG 118
Query: 126 GAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A ++ ++ + +IPF + V V+L N++ IDP A L+
Sbjct: 119 AAQDLIHVELADSGREVMIPFVEEIVPVVDLDNNRVEIDPPAGLLD 164
>gi|317508408|ref|ZP_07966078.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
gi|316253255|gb|EFV12655.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
Length = 179
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 10/177 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN--------RYVLYSNDNRELRILKMYRKNKR 59
+++ I +HGL GEV ++ + P R + LR++ + R
Sbjct: 4 LVVGRIAKSHGLVGEVAVEIRTDEPELRFAPGSALAVRMPKAKAAGKTLRVVSVREHANR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+ +F G+ + +A LR L + +D E + DEF++ +L + D G G+
Sbjct: 64 LLVSFEGVVDRTAADSLRGALLVVRSEDLPPNE-DPDEFYDHELVGLRIEDHGTGAELGE 122
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ V + G L + + LIPF V+E++ + + L
Sbjct: 123 IADVAHSAGGDWLVARVKDGREVLIPFVAAIVVEISRSDRVARVALPEGLLELNAES 179
>gi|261393038|emb|CAX50630.1| putative 16S rRNA processing protein RimM [Neisseria meningitidis
8013]
Length = 169
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A LR + R+ F E EDE++ TDL M ++
Sbjct: 61 NGELQVKFEGINDRDLAFSLRSYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 168
>gi|78044794|ref|YP_360263.1| 16S rRNA processing protein RimM [Carboxydothermus hydrogenoformans
Z-2901]
gi|109893006|sp|Q3AC71|RIMM_CARHZ RecName: Full=Ribosome maturation factor rimM
gi|77996909|gb|ABB15808.1| 16S rRNA processing protein RimM [Carboxydothermus hydrogenoformans
Z-2901]
Length = 172
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR-ELRILKMYRKNKR 59
++ L+ + + T G+ G V ++ ++P R D LRI ++ + +R
Sbjct: 1 MNNLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQLQAER 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F I++I A++L L + + +L+E+EF+ L+ + +D + G V
Sbjct: 61 ILVKFMEINDIKEANKLIFGYLKIPKNEI--VQLKENEFYLFQLKGLTVYDLNYQKIGVV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V A +L I +K L+PF K V EVNL E I ++ + L
Sbjct: 119 RTVLKNPANDLLVIDTIHDKELLLPFIKVFVKEVNLPEGFIKVELLPGMLEE 170
>gi|317484963|ref|ZP_07943847.1| 16S rRNA processing protein RimM [Bilophila wadsworthia 3_1_6]
gi|316923768|gb|EFV44970.1| 16S rRNA processing protein RimM [Bilophila wadsworthia 3_1_6]
Length = 180
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
LV + T+ HG+ GE+ ++ YA++ L V+Y + R++ I + +
Sbjct: 10 DLVEIGTLARPHGIRGEIRVNYYADSLELLRGDVVYLQAGNKPPRKMEIDTVRMHQGTPL 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQVC 120
F + +A LR L EL+EDE + D+ + D G+ G +
Sbjct: 70 IRFVEAPDRTAAEFLRGQTLLIPESALP--ELDEDEVYLHDMLGLSVVLDATGQKLGVLD 127
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G + I K L+P V +++L I I P L
Sbjct: 128 HVLFHGEQELWSILTPGGKEILLPAVPEFVADIDLDTEIIRITPPEGLLE 177
>gi|299144006|ref|ZP_07037086.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518491|gb|EFI42230.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 169
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNK 58
M KL + ++ I T G+ GEV I ++ + V + E + + ++
Sbjct: 1 MKKLSECTIIGKIINTRGIKGEVKIFPLTSSVHRFSDLITVFIGKNLEEFEVSNVSYDDR 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F IDNI+ +D LY D ELEE+ FF D+ + FD G+
Sbjct: 61 FVYLKFKNIDNINDILRFKDEFLYI--DDADRIELEENTFFINDIIGCKVFDLNDNELGE 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V + +K+ LIP V ++++ I+IDPI +N
Sbjct: 119 IKDVIENPVNDLYLLKSETG-ESLIPAVSQFVKKIDIDNKIIVIDPIEGLIN 169
>gi|310828466|ref|YP_003960823.1| RimM protein [Eubacterium limosum KIST612]
gi|308740200|gb|ADO37860.1| RimM protein [Eubacterium limosum KIST612]
Length = 171
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 8/167 (4%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATF 64
++ I HG+ GE+ + ++P YV + + + T
Sbjct: 7 VIGKILGAHGIRGELKVYPLTDDPGRFYGLDTVYVQDGQKQECCEVELVRLHKGNVLLTL 66
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + + + +L + R+D LEEDE+F DL ++ D G G V V
Sbjct: 67 KGVSDRNQSEKLIGRTVAVDRED--AVALEEDEYFIEDLIGLDVTDTDGAPVGVVKDVIQ 124
Query: 125 F-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ +EIK EK +P K L+V+ + +I D +N
Sbjct: 125 TAGSVDNIEIKTP-EKLVYVPARKVYFLKVDFENKRITADIPEELMN 170
>gi|269958359|ref|YP_003328146.1| 16S rRNA processing protein [Anaplasma centrale str. Israel]
gi|67461308|sp|Q5P9G0|RIMM_ANAMM RecName: Full=Ribosome maturation factor rimM
gi|269848188|gb|ACZ48832.1| 16S rRNA processing protein [Anaplasma centrale str. Israel]
Length = 171
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIATF 64
+VL+ + HG+ G V + ++ +P ++ Y ++ + + + IA F
Sbjct: 5 DMVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADSVIAKF 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + + +LR +LY R L+EDEF+ +L M+ G +G + + N
Sbjct: 65 DGLSSRTESEKLRGKRLYVSRSSLPR--LQEDEFYENELIGMDAKLEDGTAYGVISAILN 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
FG+ I+E+ + K ++PF++ V+++
Sbjct: 123 FGSCDIIELSTSTGKVVMVPFSRSTFPVVDVERR 156
>gi|148241234|ref|YP_001226391.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
gi|209573626|sp|A5GQ79|RIMM_SYNR3 RecName: Full=Ribosome maturation factor rimM
gi|147849544|emb|CAK27038.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
Length = 175
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSN-DNRELRILKMYRKNKR 59
D+ +++ + GL GEV I ++ P R++ + +++++L + +
Sbjct: 3 DEFLVVGQVVAAQGLKGEVRILPASDFPQRFTEPGSRWLRRRGHNEQQVQLLSGRQLPGK 62
Query: 60 --FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYW 116
F+ F GI++ +A L + D ELE+ EF DL+ + D +
Sbjct: 63 ELFVVRFEGINDRTAAESLVHQEFLVAADDIP--ELEDGEFHVRDLQGLSVRLDTESDPI 120
Query: 117 GQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G V +++ G +LEI+ + L+PF V +V L+E +LI P L+
Sbjct: 121 GVVVDLHH-GGNDLLEIELKADGRRCLVPFVDAIVPQVELEEGWLLITPPKGLLDG 175
>gi|284007747|emb|CBA73567.1| 16S rRNA processing protein [Arsenophonus nasoniae]
Length = 185
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+++ +G+ HG+ G + + S D+ Y + S ++L + N+ I
Sbjct: 15 NPIVLGKLGSAHGIRGWLRVFSSTEYTEDIFEYQPWFIQRSGQWQQLELEGWKHHNQDII 74
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ID+ +A+ + + ++ LE +E++ DL + +G G V
Sbjct: 75 IKIKHIDDRSAANSMTNCEIIVDSAQLPV--LEGNEYYWKDLIGCQVITTKGYSLGFVQD 132
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFTKF-AVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K LIPF V V+L I +D
Sbjct: 133 LMETGSNDVLVIKANLKDAFGIKERLIPFLDEQVVKNVDLTTKIIEVDWDPG 184
>gi|218767728|ref|YP_002342240.1| 16S rRNA-processing protein RimM [Neisseria meningitidis Z2491]
gi|14423893|sp|Q9JVK9|RIMM_NEIMA RecName: Full=Ribosome maturation factor rimM
gi|121051736|emb|CAM08040.1| putative 16S rRNA processing protein [Neisseria meningitidis Z2491]
gi|325129771|gb|EGC52580.1| 16S rRNA processing protein RimM [Neisseria meningitidis
OX99.30304]
gi|325135813|gb|EGC58425.1| 16S rRNA processing protein RimM [Neisseria meningitidis M0579]
gi|325207636|gb|ADZ03088.1| 16S rRNA processing protein RimM [Neisseria meningitidis NZ-05/33]
Length = 169
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRK 56
M V M I G+ G + I + Y+++ +D + L + + +
Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N F GI++ A L + R+ F E EDE++ TDL M ++
Sbjct: 61 NSELQVKFEGINDRDLAFSLHGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GKVSNLMETGANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 168
>gi|107022148|ref|YP_620475.1| 16S rRNA-processing protein RimM [Burkholderia cenocepacia AU 1054]
gi|122979075|sp|Q1BY03|RIMM_BURCA RecName: Full=Ribosome maturation factor rimM
gi|105892337|gb|ABF75502.1| 16S rRNA processing protein RimM [Burkholderia cenocepacia AU 1054]
Length = 225
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ ++ R+ L R +RI++ +
Sbjct: 48 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTR 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL +E + Q
Sbjct: 108 SDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPA--LAADEFYWVDLIGLEVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|281492128|ref|YP_003354108.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
gi|281375811|gb|ADA65308.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
Length = 171
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRK 56
++K + TI T GL GEV + + + L+ + + ++L++ +
Sbjct: 1 MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ F G +I+ + + + ++ E+L++ EF+ ++ + ++
Sbjct: 61 KNFYVVKFEGFYHINDVEKYKGYIVKIAEEN--QEDLDDGEFYYHEIIGSDVYEND-VLI 117
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ +L V++ ++++ + I GL++
Sbjct: 118 GQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVSQHRVDVS-IMEGLDD 171
>gi|304415132|ref|ZP_07395858.1| 16S rRNA processing protein [Candidatus Regiella insecticola LSR1]
gi|304283014|gb|EFL91451.1| 16S rRNA processing protein [Candidatus Regiella insecticola LSR1]
Length = 197
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +++ +G+T+G+ G + + S ++ Y + + + + + + N I
Sbjct: 27 QKIVVGKMGSTYGVRGWLRLFSSTEIASNIFDYQPWFIQRAGQWQSIELERWKHHNHDLI 86
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+D+ SAS+L + ++ L ++++ DL + G G++
Sbjct: 87 IKIKSVDDQGSASQLTNCEIVVDSTQLPV--LSTNDYYWKDLIGCQVITTNGYQLGKIID 144
Query: 122 VYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILID 163
+ G+ ++ +K ++ K LIP+ K V VN+ + ++ +D
Sbjct: 145 MMETGSNDVMVVKADLKDAFGIKERLIPYLDKQVVKRVNVDDKRVEVD 192
>gi|115465483|ref|NP_001056341.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|51854276|gb|AAU10657.1| unknown protein [Oryza sativa Japonica Group]
gi|113579892|dbj|BAF18255.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|215704607|dbj|BAG94235.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 304
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYV----LYSNDNRELRILKMYRK- 56
LV++ + HG+ G+V + + P R++ +E +++
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
K +I TF G+D++ A ++ + K D ++EEDE ++ DL M + GK
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRP--KMEEDEIYSLDLVGMRVIVKDTGK 193
Query: 115 YWGQVCGVYNFGAGSILEI------------------KNTMEKTFLIPFTKFAVLEVNLQ 156
G V V+NFGAG +L++ + IPF + V +++++
Sbjct: 194 LVGTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAEDIVPDIDME 253
Query: 157 ENKILIDPIAAGLNNTTMKNP 177
++ I P L +
Sbjct: 254 SREMWITPPKGLLELNARSDK 274
>gi|332967675|gb|EGK06786.1| 16S rRNA processing protein RimM [Kingella kingae ATCC 23330]
Length = 169
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M V M I G+ G V + + L Y + D + +
Sbjct: 1 MSDTQNWVGMGYIKGAFGVKGWVKVQASTEYADSLLDYPTWRLVKGKDVQIAEVEFGKVA 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
F+ I++ +A+ +R + R +F E EEDEF+ DL M+ +R+
Sbjct: 61 GDELQVKFTHINDRDAAALMRGYTIEVSRDEFA--ETEEDEFYWADLVGMQVVNRENIAL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + GA +L + LIPF V +VN + I +D GL+
Sbjct: 119 GEVAKLMETGAHDVLIVCGEHG-EKLIPFVSHFVDDVNKETRVITVD---WGLD 168
>gi|317125415|ref|YP_004099527.1| 16S rRNA processing protein RimM [Intrasporangium calvum DSM 43043]
gi|315589503|gb|ADU48800.1| 16S rRNA processing protein RimM [Intrasporangium calvum DSM 43043]
Length = 182
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--------NRYVLYSNDNRELRILKMYRKN 57
VL+A IG HGL GEV + + ++P S R+L + N
Sbjct: 4 DRVLVARIGKPHGLRGEVTVQLHTDDPERRFAPGEVLETEATPGSGVPRQLTVRTTRDHN 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETFDRQGKYW 116
++ F I + A LR +L + +E E+D +F DL +E DR+G
Sbjct: 64 GTWLLGFEEIPDRTGAEGLRGTRLVVEASAVTADEDEDDAAWFEDDLVGLEVRDREGLVL 123
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V G+ A L I+ + T +PF + V V + +++D +
Sbjct: 124 GMVTGLDLGAAQDRLVIRLSDGVTAQVPFVEAIVPTV--AADHVVVDAPPGLFD 175
>gi|270284299|ref|ZP_05965884.2| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
gi|270277505|gb|EFA23359.1| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
Length = 215
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A +G GL GEV + S+ + P + + + + + + R+I
Sbjct: 21 DLLRVARVGRAQGLKGEVTVQSFTDEPEYRFEPGSELYTKDGEQTFVVERSRSMKNRWIL 80
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--------DRQGK 114
F G+D+ +A + LY + D +D LEED ++ DL +E + +
Sbjct: 81 KFEGVDDRTAAEAINGTVLYGEADDAEDM-LEEDVWYAKDLVGLEVRMAPDNLLGLEEDR 139
Query: 115 YWGQVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V + G +L+++ EKT L+PF + V E++ ++ LI+P
Sbjct: 140 LIGKVVDVID-GPQWLLKVRLAEPVRDADGVVVEKTALVPFVEQIVTEIDPEQQVALINP 198
Query: 165 IAAGLNNTTMKNPQYD 180
+ + + +
Sbjct: 199 PGGLIPGLGVMDVSEE 214
>gi|170741841|ref|YP_001770496.1| 16S rRNA-processing protein RimM [Methylobacterium sp. 4-46]
gi|168196115|gb|ACA18062.1| 16S rRNA processing protein RimM [Methylobacterium sp. 4-46]
Length = 176
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR---FIATFS 65
+ G HGL GEV + SY P+ + Y L ++D R + + + +A +
Sbjct: 2 LGEFGRAHGLQGEVRLKSYTAEPMAIGGYGPLLASDGRVVELTALRPAAGTPDILVARVA 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ +A L L L R E +EDEFF DL + D G G + V N+
Sbjct: 62 GVAGRSAAEGLNRLTLSVPRDRLGAPE-DEDEFFTADLVGLAAVDAAGTRLGTIRAVPNY 120
Query: 126 GAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G G +LEI+ + L+PFT+ V +V + ++ I P
Sbjct: 121 GGGDLLEIEPEGGGRPALLPFTRLFVPKVEIAAGRVTIAPPEDL 164
>gi|116750421|ref|YP_847108.1| 16S rRNA processing protein RimM [Syntrophobacter fumaroxidans
MPOB]
gi|116750463|ref|YP_847150.1| 16S rRNA processing protein RimM [Syntrophobacter fumaroxidans
MPOB]
gi|209573624|sp|A0LMM1|RIMM_SYNFM RecName: Full=Ribosome maturation factor rimM
gi|116699485|gb|ABK18673.1| 16S rRNA processing protein RimM [Syntrophobacter fumaroxidans
MPOB]
gi|116699527|gb|ABK18715.1| 16S rRNA processing protein RimM [Syntrophobacter fumaroxidans
MPOB]
Length = 176
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 8/169 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNR--ELRILKMYRKNKRFI 61
LV + + THG+ G + I Y + R+ L S + L ++ + + + +
Sbjct: 10 LVPVGKVTRTHGIRGALKIFPYGESLAAQAAGERFFLRSKNGGYCTLTLIGLRAQGRMLV 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F I +++ A +++ E E+++ L ++ G+ G +
Sbjct: 70 CGFEEIKDVNGAQPFVGEEIFLPEDRLPPVS--EGEYYHYRLIGLDIVTLDGESLGVLRK 127
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G + + + LIP + + E++L+ ++++D ++
Sbjct: 128 IIETGGNDVYVAER-EGREILIPAIEDVIREIDLERKRMVVDLPEGLVD 175
>gi|289522292|ref|ZP_06439146.1| 16S rRNA processing protein RimM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289504128|gb|EFD25292.1| 16S rRNA processing protein RimM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 176
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRK-- 56
++LV + I HG+ GE+ + + P Y + L I +
Sbjct: 4 EELVTVGRIVGAHGIKGELRLLPLTDFPERFKDMDYLDVYRPNGSFWCRLTINSIREHVG 63
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
+FI I + +A LR + + Q+ EL + ++ DL + D G
Sbjct: 64 KGQFIVGVDEIVDRDAAESLRGGLVMVRPQE--RVELPDGFYWIDDLLGLAVVDYDTGNN 121
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G + + G+ + ++ K ++P V E+N+ + + +
Sbjct: 122 LGTLVEIMPTGSNDVYVVETEKGKRHMLPAISEVVKEINIDNGFVKVHLLEGL 174
>gi|329117617|ref|ZP_08246334.1| 16S rRNA processing protein RimM [Streptococcus parauberis NCFD
2020]
gi|326908022|gb|EGE54936.1| 16S rRNA processing protein RimM [Streptococcus parauberis NCFD
2020]
Length = 172
Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDN----RELRILKMYRKNK 58
+ + I T GL GE+ + S + + N+ +++ I+ +
Sbjct: 2 EYFNVGKIVNTQGLQGELRVLSVSDFTEERFQKGNLLALFNEKDQFVKDVEIVNHRIQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F +++I+ + + L D L+EDEF+ ++ ++ + G
Sbjct: 62 FDIVKFKDMNHINVVEKFKGYTLKISEDKLTD--LDEDEFYYHEIIGLDVY-EDDVLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + ++ +K L+P+ +L V+L+EN++ +D I GL++
Sbjct: 119 VKEILQPGANDVWVVQRKGKKDLLLPYIPPVILNVDLEENRVDVD-IMEGLDDE 171
>gi|307704583|ref|ZP_07641488.1| 16S rRNA processing protein RimM [Streptococcus mitis SK597]
gi|307621880|gb|EFO00912.1| 16S rRNA processing protein RimM [Streptococcus mitis SK597]
Length = 172
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVNVEILEGLDDEN 172
>gi|255003608|ref|ZP_05278572.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str. Puerto
Rico]
gi|255004737|ref|ZP_05279538.1| 16S rRNA processing protein (rimM) [Anaplasma marginale str.
Virginia]
Length = 166
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIATFS 65
+VL+ + HG+ G V + ++ +P ++ Y ++ + + + IA F
Sbjct: 1 MVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGPLTDGHNCFNVTVVSVLGADSVIAKFD 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + + +LR +LY R L+EDEF+ +L M+ G +G + + NF
Sbjct: 61 GLSSRTESEKLRGKRLYVSRSSLPR--LQEDEFYENELIGMDAKLEDGTAYGVISAILNF 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G+ I+E+ + K ++PF++ V+++
Sbjct: 119 GSCDIIELSTSTGKVVMVPFSRSTFPVVDVERR 151
>gi|71908678|ref|YP_286265.1| 16S rRNA processing protein RimM [Dechloromonas aromatica RCB]
gi|109893010|sp|Q47BI6|RIMM_DECAR RecName: Full=Ribosome maturation factor rimM
gi|71848299|gb|AAZ47795.1| 16S rRNA processing protein RimM [Dechloromonas aromatica RCB]
Length = 170
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKR 59
+ +V++ + +G+ G +++ + ++P+ ++ RE R+ +
Sbjct: 4 NDIVVLGRLADPYGIQGWLWLYPFGDDPLAWAEMPVWWIAREGEPWRECRLKSLKAHGNG 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ G+ + +A ++ + + A R+ E ++EF+ TDL ++ + + G+V
Sbjct: 64 VVVLLDGVADRTAAESMKGVLVGAPREALPTTE--KNEFYWTDLIGLDVINTADERIGKV 121
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ GA S+L + + L+PF VL V + +I ++
Sbjct: 122 VGLIETGANSVLRVMGDDKVERLLPFVSAVVLAVEKEAGQIRVE 165
>gi|309389194|gb|ADO77074.1| 16S rRNA processing protein RimM [Halanaerobium praevalens DSM
2228]
Length = 170
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
D + + I G GEV + + + P Y+ ++ +EL I + + +
Sbjct: 3 DNYLEIGIITRFQGNKGEVRVKATTDIPERFFDLESVYLKRRDNLKELEIDYIRFQKQFV 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I++I A EL++ ++ + L ED F+ +DL E E + + G+Y G++
Sbjct: 63 IIKFFSINSIDEAEELKNYQVLIDESE--KYLLPEDNFYVSDLIESEVYLKTGEYLGKLV 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + I I +K ++IP + ++E+ ++ KI++DPI L+
Sbjct: 121 DVISNTGTDIFLIAG-QKKEYMIPASHEMIIEIKVEAKKIIVDPIPGILD 169
>gi|146318473|ref|YP_001198185.1| 16S rRNA-processing protein RimM [Streptococcus suis 05ZYH33]
gi|253751601|ref|YP_003024742.1| 16S rRNA processing protein [Streptococcus suis SC84]
gi|253753503|ref|YP_003026644.1| 16S rRNA processing protein [Streptococcus suis P1/7]
gi|253755672|ref|YP_003028812.1| 16S rRNA processing protein [Streptococcus suis BM407]
gi|166226483|sp|A4VUJ6|RIMM_STRSY RecName: Full=Ribosome maturation factor rimM
gi|145689279|gb|ABP89785.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
05ZYH33]
gi|251815890|emb|CAZ51504.1| 16S rRNA processing protein [Streptococcus suis SC84]
gi|251818136|emb|CAZ55930.1| 16S rRNA processing protein [Streptococcus suis BM407]
gi|251819749|emb|CAR45623.1| 16S rRNA processing protein [Streptococcus suis P1/7]
gi|292558256|gb|ADE31257.1| RimM [Streptococcus suis GZ1]
gi|319758040|gb|ADV69982.1| 16S rRNA-processing protein RimM [Streptococcus suis JS14]
Length = 172
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + ++ E+ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDKDQFAMEVEIASHRKAKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ D LE+ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFSLKIAEENLTD--LEDGEFYYHEIIGLDVYEND-ILIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K +K L+P+ VL +++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRVDVELLEGLDDEN 172
>gi|319792311|ref|YP_004153951.1| 16S rRNA processing protein rimm [Variovorax paradoxus EPS]
gi|315594774|gb|ADU35840.1| 16S rRNA processing protein RimM [Variovorax paradoxus EPS]
Length = 184
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 13/173 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR-----ELRILKMYRKN 57
+ + I G+ G + ++ P L R+ L + L I + +
Sbjct: 13 DAIEVGRIADAWGIKGWFKVLPHSAQPEALFSSKRWFLQAPGASANAAFRLAIREAKEHS 72
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A+ + + ++A LR +++ R F +DE++ DL + +R+G G
Sbjct: 73 DCIVASSEEVPDRNAAEALRGARVFVPRSSFPTA--GDDEYYWVDLIGLSVVNREGVTLG 130
Query: 118 QVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILIDPIAA 167
V + G + L + + ++PF V +V+L I +D
Sbjct: 131 TVRELLATGPQTTLVLTAEEDGKNVERMVPFVSVFVDKVDLAGRLITVDWQPE 183
>gi|315613360|ref|ZP_07888269.1| 16S rRNA processing protein RimM [Streptococcus sanguinis ATCC
49296]
gi|315314595|gb|EFU62638.1| 16S rRNA processing protein RimM [Streptococcus sanguinis ATCC
49296]
Length = 172
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + D + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEDRFKKGAELALFDEKDQFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ ++ ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLDVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPLVVLHVDIPNKRVQVEILEGLDDED 172
>gi|116071641|ref|ZP_01468909.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
gi|116065264|gb|EAU71022.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
Length = 180
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-NRELRILKMYRKNK 58
L++ + + I GL GE+ ++ ++ P R+V RE+++ +
Sbjct: 8 LEEWLTVGKIVGVQGLQGELRVNPASDFPERFTVPGPRWVRSKGSAPREVQLKSGRQLPG 67
Query: 59 R--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
+ F+ +DN ++A L D L E EF DL +E
Sbjct: 68 KSLFVVRLDSVDNRNAAEALVGSDWMVPADDRPA--LGEGEFHLLDLVGLEARLSLDSDP 125
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +L+IK + T LIPF + V EV+L++ +L+ P ++
Sbjct: 126 IGTVTDLIS-GGNDLLQIKRSNGSTLLIPFVEAIVPEVHLKDGWLLLTPPPGLMD 179
>gi|293365650|ref|ZP_06612359.1| 16S rRNA processing protein RimM [Streptococcus oralis ATCC 35037]
gi|307703598|ref|ZP_07640540.1| 16S rRNA processing protein RimM [Streptococcus oralis ATCC 35037]
gi|291316018|gb|EFE56462.1| 16S rRNA processing protein RimM [Streptococcus oralis ATCC 35037]
gi|307623005|gb|EFO02000.1| 16S rRNA processing protein RimM [Streptococcus oralis ATCC 35037]
Length = 172
Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ ++ ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVSEEDLND--LDDGEFYYHEIIGLDVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVEVEILEGLDDED 172
>gi|15673547|ref|NP_267721.1| 16S rRNA-processing protein [Lactococcus lactis subsp. lactis
Il1403]
gi|13878679|sp|Q9CFB6|RIMM_LACLA RecName: Full=Ribosome maturation factor rimM
gi|12724568|gb|AAK05663.1|AE006387_6 16S rRNA processing protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407033|gb|ADZ64104.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
CV56]
Length = 171
Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRK 56
++K + TI T GL GEV + + + L+ + + ++L++ +
Sbjct: 1 MEKFYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDDKDNYIQDLKVKSGRPQ 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ F G +I+ + + + ++ E+L++ EF+ ++ + ++
Sbjct: 61 KNFYVVKFEGFYHINDVEKYKGYIVKIAEEN--QEDLDDGEFYYHEIIGSDVYEND-ILI 117
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GQ+ + GA + +K ++ L+P+ +L V++ ++++ + I GL++
Sbjct: 118 GQISEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDVNQHRVDVS-IMEGLDD 171
>gi|315221647|ref|ZP_07863566.1| 16S rRNA processing protein RimM [Streptococcus anginosus F0211]
gi|315189298|gb|EFU22994.1| 16S rRNA processing protein RimM [Streptococcus anginosus F0211]
Length = 179
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + I +
Sbjct: 9 NYYNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGSILALFDKKEHFVMNVEIASHRKMKN 68
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L +D D L+E EF+ ++ + +++ G
Sbjct: 69 FDIIKFKGMYHINDIEKYRDFTLKVAEEDLSD--LDEGEFYYHEIIGLNVYEQD-ILIGT 125
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL ++L+ N++ ++ I GL++
Sbjct: 126 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDLENNRVDVE-IPEGLDDE 178
>gi|302392416|ref|YP_003828236.1| 16S rRNA processing protein RimM [Acetohalobium arabaticum DSM
5501]
gi|302204493|gb|ADL13171.1| 16S rRNA processing protein RimM [Acetohalobium arabaticum DSM
5501]
Length = 168
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRELRILKMYRKNKRFI 61
++L+ + I G GEV + + P L R +L ++ +E I++ R +K+FI
Sbjct: 3 EELIDIGKITRHQGNKGEVRVLPLTDYPERFEFLERAILVKDNKKEEVIVEDMRYHKQFI 62
Query: 62 A-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F+ D+I +A E +D + + EL E ++ ++ +++ G+ G+V
Sbjct: 63 VLKFAEFDDIGTAIEHKDFMVKIPESE--AIELPEGHYYLHEIIDLKVVTVDGQNLGKVT 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G+ + +++ K LIP TK + +++L+ +++I PI +
Sbjct: 121 DILETGSNDVYVVQSGS-KEHLIPGTKEVIKQIDLEAKEMVIKPIKGLI 168
>gi|293189834|ref|ZP_06608548.1| 16S rRNA processing protein RimM [Actinomyces odontolyticus F0309]
gi|292821249|gb|EFF80194.1| 16S rRNA processing protein RimM [Actinomyces odontolyticus F0309]
Length = 170
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 9/172 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPI--DLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
A +G HGL GEV +D +++P + + D R L + + R +A+F
Sbjct: 6 AIVGPAHGLRGEVIVDVRSDDPEVMAPGSRLDIAGDQRSLTVRTVRVHKDRVLASFEECV 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
A LR +L D EED ++ +L+ ++ G G V G+ A
Sbjct: 66 TREDAEALRGARLLV------DAHPEEDAWYPHELKGLQARTPSGDVLGTVSGLTPGVAQ 119
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
+L + T ++PF V V+++ ++ID + + + D
Sbjct: 120 DLLLVATDRG-TVMVPFVTALVPTVDVEGGFVVIDAPPGLFDEDAVSEREGD 170
>gi|326693315|ref|ZP_08230320.1| 16S rRNA-processing protein RimM [Leuconostoc argentinum KCTC 3773]
Length = 172
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN-RELRILKMYR 55
M K + + TI THG+ GEV I + + + + + + D ++
Sbjct: 1 MTK-ENYFKVGTIVNTHGIRGEVKILAITDFADERFKKGAELQVETKDGFVPFKVKSSRL 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++ F G++NI+ + + +Y E L +DE++ ++ + D G
Sbjct: 60 HKNMWLVLFEGVNNINDIEKYKTQDVYVYGD--ARETLGDDEYYYDEIIDSRVCDLDGND 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + GA + ++ +K LIP V V++ +I ID + L+
Sbjct: 118 IGVVSEIMTTGANDVWVVQRPGKKDALIPMIDDVVKNVDVDNKRITIDALEGLLD 172
>gi|289167676|ref|YP_003445945.1| 16S_rRNA processing protein RimM [Streptococcus mitis B6]
gi|288907243|emb|CBJ22078.1| 16S rRNA processing protein RimM [Streptococcus mitis B6]
Length = 172
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ N+ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKNQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVEILEGLDDED 172
>gi|157151375|ref|YP_001450597.1| 16S rRNA-processing protein RimM [Streptococcus gordonii str.
Challis substr. CH1]
gi|189040858|sp|A8AXT7|RIMM_STRGC RecName: Full=Ribosome maturation factor rimM
gi|157076169|gb|ABV10852.1| 16S rRNA processing protein RimM [Streptococcus gordonii str.
Challis substr. CH1]
Length = 172
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I++ + RD L +D D LEE EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINAIEKFRDFSLKVAEEDLSD--LEEGEFYYHEIIGLEVYEND-VLLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|261367299|ref|ZP_05980182.1| 16S rRNA processing protein RimM [Subdoligranulum variabile DSM
15176]
gi|282570902|gb|EFB76437.1| 16S rRNA processing protein RimM [Subdoligranulum variabile DSM
15176]
Length = 176
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 7/179 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
+ + I +THG+ GE+ + R ++ E+R+L + +
Sbjct: 1 MQNYLPACKIVSTHGVRGEMKALPLCDGAAFLSKFKRLFAKADGTGEVRVLGVRAQGNVI 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQV 119
+ G+ ++ +A Y + D + L + +F DL D G+ +G +
Sbjct: 61 LLRLEGVADMDAARAQVGRTYYFAKGDAR---LPKGRYFIDDLLGCRVVDAENGRVYGTL 117
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V + A I + + T ++P V E++L+ I + PI N + +
Sbjct: 118 TAVDHPAAQDIYTVTDGEGGTHMLPAVPEFVREIDLEARTITVTPIDGMFNEAVNGDKE 176
>gi|307151402|ref|YP_003886786.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7822]
gi|306981630|gb|ADN13511.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7822]
Length = 210
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 41/211 (19%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSN--DNRELRILKMY--R 55
+D + + TI GL GEV + S ++ P R+++ N +E+ +L
Sbjct: 1 MDDWLEIGTIVAPQGLKGEVRVSSESDFPERFEEPGKRWLVPPNSVQVQEVELLSGRYIP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
++ +GI++ A LR KL D L EDE+ DL +E +++Q G+
Sbjct: 61 GKNIYVVQLAGIEDREEAEALRGYKLLVPLSDRPS--LSEDEYHVADLINLEVYNQQTGE 118
Query: 115 YWGQVCGVYNFGAGSILEIK-----------------------------NTMEKTFLIPF 145
G V + G +LE+ T LIPF
Sbjct: 119 NVGIVTELLWAG-NDLLEVTLHQQPEIKPTPELDLSKVRKSKHRKLKPKVKKPLTVLIPF 177
Query: 146 TKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
K V V+LQ +I I+P A L + +
Sbjct: 178 VKEIVPVVDLQSRRIEINPPAGLLEVNSEQA 208
>gi|22537502|ref|NP_688353.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae 2603V/R]
gi|25011467|ref|NP_735862.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae NEM316]
gi|77407214|ref|ZP_00784183.1| 16S rRNA processing protein RimM [Streptococcus agalactiae H36B]
gi|77409298|ref|ZP_00786003.1| 16S rRNA processing protein RimM [Streptococcus agalactiae COH1]
gi|48474455|sp|Q8DYW8|RIMM_STRA5 RecName: Full=Ribosome maturation factor rimM
gi|48474456|sp|Q8E4H6|RIMM_STRA3 RecName: Full=Ribosome maturation factor rimM
gi|22534382|gb|AAN00226.1|AE014254_6 16S rRNA processing protein RimM [Streptococcus agalactiae 2603V/R]
gi|24413005|emb|CAD47084.1| unknown [Streptococcus agalactiae NEM316]
gi|77172095|gb|EAO75259.1| 16S rRNA processing protein RimM [Streptococcus agalactiae COH1]
gi|77174176|gb|EAO77076.1| 16S rRNA processing protein RimM [Streptococcus agalactiae H36B]
Length = 172
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S + + + L+ N+ ++ I ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKGQVLALFDEKNQFVMDIEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L D L++ EF+ ++ ++ ++ + + G+
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFTLKVAEDQLSD--LKDGEFYYHEIIGLDVYEGE-ELIGK 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + ++ ++ L+P+ VLEV+L ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVERHGKRDLLLPYIPPVVLEVDLSNQRVQVELMEGLDDED 172
>gi|326793986|ref|YP_004311806.1| ribosome maturation factor rimM [Marinomonas mediterranea MMB-1]
gi|326544750|gb|ADZ89970.1| Ribosome maturation factor rimM [Marinomonas mediterranea MMB-1]
Length = 181
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 76/171 (44%), Gaps = 11/171 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
++ +++ I + +G+ G V + S+ + Y + S + + + + +
Sbjct: 8 TAPEQALVVGRITSVYGVKGWVKLYSHTEPMTGIFDYSHWWLKTSTGWKRIELNQGRTQG 67
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +A+ G + E+ +Y +D EL++ +F+ + LE + ++G G
Sbjct: 68 RGLVASIKGYADRDIVREICGQDIYIDVKDLP--ELDDGDFYWSQLEGLTVTTKEGVLLG 125
Query: 118 QVCGVYNFGAGSILEIKNTME----KTFLIPFTKF-AVLEVNLQENKILID 163
+V + GA ++ ++ + LIP+ +L+VNL+ +++D
Sbjct: 126 KVSQLMETGANDVVVVRACEGSYDREERLIPYVPETYILDVNLESKAMVVD 176
>gi|217076195|ref|YP_002333911.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
gi|226734093|sp|B7IEQ6|RIMM_THEAB RecName: Full=Ribosome maturation factor rimM
gi|217036048|gb|ACJ74570.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
Length = 178
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNREL---RILKMYRKN 57
L V +A +G THGL GE+ + + N P L LY+ ++ + + +
Sbjct: 9 LSGKVAVAILGKTHGLKGELKLHPFTNFPEIIESLEEIFLYNEKTKQFMVATVENLRLAD 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+I +G++N+ +A + K+Y + + + L +DE++ ++ + D GK G
Sbjct: 69 GYYIIKLNGVENVENARKFVGSKVYINKDELPN--LSKDEYYFFEIVGSQVIDESGKVLG 126
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V V G+ ++ + E LIP ++ ++ + KI++ + L+
Sbjct: 127 VVDEVIQTGSNDVIVVNKNKEDEILIPVIYDYIITLDKENKKIVVK-VPEWLD 178
>gi|171741403|ref|ZP_02917210.1| hypothetical protein BIFDEN_00486 [Bifidobacterium dentium ATCC
27678]
gi|283455250|ref|YP_003359814.1| 16S rRNA processing protein RimM [Bifidobacterium dentium Bd1]
gi|171277017|gb|EDT44678.1| hypothetical protein BIFDEN_00486 [Bifidobacterium dentium ATCC
27678]
gi|283101884|gb|ADB08990.1| rimM 16S rRNA processing protein [Bifidobacterium dentium Bd1]
Length = 195
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + E + R+I
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPGAVLYTKDGEEEYVVEHSRTFKNRWII 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
F GIDN S+ LY + D +E L+ DE++ DL +E G
Sbjct: 70 KFEGIDNRDSSEAANGTVLYGEADD-PEEMLQADEWYPKDLIGLEARLADDNTLGLEPGM 128
Query: 115 YWGQVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V A +L+I+ E + L+PF V +++L+E + ++P
Sbjct: 129 AIGKVVDVIEV-AQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEEGYLTLNP 187
Query: 165 IAAGL 169
+
Sbjct: 188 PGGLI 192
>gi|90020851|ref|YP_526678.1| 16S rRNA-processing protein RimM [Saccharophagus degradans 2-40]
gi|109893046|sp|Q21LG3|RIMM_SACD2 RecName: Full=Ribosome maturation factor rimM
gi|89950451|gb|ABD80466.1| 16S rRNA processing protein RimM [Saccharophagus degradans 2-40]
Length = 183
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
K L+ + I G+ G V + S+ + ++ Y + +E I + +
Sbjct: 7 AKKSNLITVGRITGVFGIKGWVKLKSFTDPQDNVLEYSPLLLKTKHGVKECEIAEYQFRP 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD---RQGK 114
+ + G+D+ ++A L + + + EL++D+F+ LE + +
Sbjct: 67 QGLVVRLKGVDDRNAAEALAPVDVAIDKSLLP--ELDDDDFYWHQLEGLRVVTIYEGNTQ 124
Query: 115 YWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKF-AVLEVNLQENKILID 163
G V V GA +LE+K ++ L+P+ V +V+L I +D
Sbjct: 125 DLGVVSKVMATGANDVLEVKPDAQSIDDRDRLVPYVLDLYVKKVDLSAECITVD 178
>gi|289704589|ref|ZP_06501022.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
gi|289558709|gb|EFD51967.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
Length = 200
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKN 57
D LV +A IG HG+ GEV + + ++P R V+ EL + +
Sbjct: 7 DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAELTVTRARWNK 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + F+ + + A LR +L+A E DE++ DL ++E +G+ G
Sbjct: 67 QILVVGFAESPDRNVAETLRGAQLFA----VPAAPEESDEWYEEDLVDLEVR-VEGERVG 121
Query: 118 QVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
V + +L + E+ L+PF + V E++ + +++ P L T ++
Sbjct: 122 VVTALTTGAVQDLLHVALDGVEEEALVPFVEEIVPEIDPEAGVLVLTPPPGLLELATGED 181
Query: 177 P 177
Sbjct: 182 E 182
>gi|90416163|ref|ZP_01224095.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2207]
gi|90331888|gb|EAS47102.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2207]
Length = 173
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRKNKRFI 61
K +++ I G+ G V + +Y L Y + D + ++I + R + +
Sbjct: 2 KTLVVGRITAVFGVRGWVKVHAYTEKVETLCSYQPWLIDTPAGVKPIQIDEWRRHGESLV 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK--YWGQ 118
A +GID+ A + ++ EL+ D+++ LE + +G+ G
Sbjct: 62 AHIAGIDDRDIAQTWCGNDILVEKDKLP--ELKSDDYYWHQLEGLSVVSHYEGEQIRLGT 119
Query: 119 VCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILI--DP 164
V + GA +L IK + LIP+ V +++ + +I + DP
Sbjct: 120 VKSLLETGANDVLVIKGDAESIDREERLIPYVDQFVTSISMVDRRIDVIWDP 171
>gi|312865008|ref|ZP_07725236.1| 16S rRNA processing protein RimM [Streptococcus downei F0415]
gi|311099119|gb|EFQ57335.1| 16S rRNA processing protein RimM [Streptococcus downei F0415]
Length = 173
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ TI T GL GE+ + S ++ + + L+ + +R E+ I +
Sbjct: 2 NYYKVGTIVNTQGLQGEMRVLSVSDFADERFKRGSSLALFDDKDRFVQEVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F + +I++ + + L ++ D L + EF+ + + + + G
Sbjct: 62 FDVIKFKDMYHINAIEKFKGHVLKVAEENLTD--LSDGEFYYHQIIGLPVY-ENNQQLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ V +V++ ++ ++ + ++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVKKVDVTNQRVEVELLEGLDDDE 172
>gi|78065656|ref|YP_368425.1| 16S rRNA-processing protein [Burkholderia sp. 383]
gi|109893004|sp|Q39ID5|RIMM_BURS3 RecName: Full=Ribosome maturation factor rimM
gi|77966401|gb|ABB07781.1| 16S rRNA processing protein RimM [Burkholderia sp. 383]
Length = 225
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNR-ELRILKMYRK 56
D V + + +GL G V + ++A+ + + L R +RI++
Sbjct: 48 PDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALLKARHWWLERGAERLSVRIMQSKAH 107
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G+ + +A +R +++ +R+DF L DEF+ DL ++ + Q
Sbjct: 108 SDTVVAQPAGVSDRDAAFAMRGFRVFVRREDFPA--LAADEFYWVDLIGLDVVNEQSVAL 165
Query: 117 GQVCGVYNFGAGSILEIKNTMEK--------TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ + G SI+ ++ LIPF V V+ +I++D
Sbjct: 166 GKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVD 220
>gi|33864685|ref|NP_896244.1| 16S rRNA-processing protein RimM [Synechococcus sp. WH 8102]
gi|46397680|sp|Q7U9V4|RIMM_SYNPX RecName: Full=Ribosome maturation factor rimM
gi|33632208|emb|CAE06664.1| possible 16S rRNA processing protein RimM [Synechococcus sp. WH
8102]
Length = 177
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRK- 56
MV+ + +++ + GL GE+ ++ ++ P L E + +++ +
Sbjct: 1 MVESEDWLIVGKLVGAQGLQGELRVNPASDFPERFTTPGSRWLRGRKGGEPKEVQLKKGR 60
Query: 57 ----NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
FI GID+ +A L +L D ELEE EF DL +E
Sbjct: 61 QLPGKSLFILRLEGIDSRDAAEALVGQELLVPASDRP--ELEEGEFHLLDLVGLEARLHA 118
Query: 113 GKY-WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ G V + + G +LE+K + +T LIPF + V EV+L++
Sbjct: 119 DEPAIGVVTDLIS-GGNDLLELKTSAGRTLLIPFVESIVPEVHLEKG 164
>gi|194097807|ref|YP_002000850.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae NCCP11945]
gi|239998300|ref|ZP_04718224.1| 16S rRNA-processing protein [Neisseria gonorrhoeae 35/02]
gi|240013482|ref|ZP_04720395.1| 16S rRNA-processing protein [Neisseria gonorrhoeae DGI18]
gi|240015921|ref|ZP_04722461.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA6140]
gi|240112271|ref|ZP_04726761.1| 16S rRNA-processing protein [Neisseria gonorrhoeae MS11]
gi|240115015|ref|ZP_04729077.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID18]
gi|240117300|ref|ZP_04731362.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID1]
gi|240120554|ref|ZP_04733516.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID24-1]
gi|240125049|ref|ZP_04737935.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-92-679]
gi|240127562|ref|ZP_04740223.1| 16S rRNA-processing protein [Neisseria gonorrhoeae SK-93-1035]
gi|193933097|gb|ACF28921.1| Probable 16S rRNA-processing protein rimM [Neisseria gonorrhoeae
NCCP11945]
gi|317163583|gb|ADV07124.1| 16S rRNA-processing protein RimM [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 160
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVVNGELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID+ SA LR + R+ F E EDE++ DL M ++ G+V +
Sbjct: 61 GIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 159
>gi|157827297|ref|YP_001496361.1| 16S rRNA-processing protein RimM [Rickettsia bellii OSU 85-389]
gi|157802601|gb|ABV79324.1| 16S rRNA-processing protein [Rickettsia bellii OSU 85-389]
Length = 166
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G + + S+ + + + L + ++ I + + +K
Sbjct: 1 MDSLENLILVGVIKSCHGIKGHIILRSFTDPTVKITERELVNESGEKVNINLIKQNSKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F+ I + A L+ KL+ R +LEEDEF+ TDL + D G++
Sbjct: 61 LICQFNDISTRNEAENLKGYKLFCLRSSLP--KLEEDEFYITDLNNLPILDNNHTEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+E++ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEVEFLDKTTELLPFNKDFFPII 152
>gi|225025696|ref|ZP_03714888.1| hypothetical protein EIKCOROL_02598 [Eikenella corrodens ATCC
23834]
gi|224941477|gb|EEG22686.1| hypothetical protein EIKCOROL_02598 [Eikenella corrodens ATCC
23834]
Length = 160
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----RELRILKMYRKNKRFIATFS 65
M + G+ G V + + L Y ++ R + F+
Sbjct: 1 MGYVKGAFGIKGWVKVAADTEYADSLLDYPVWQLSKDSVSRSYTLENGQVAGDELQVKFA 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
I + +A LR + KR DF+ E E++ DL + +RQ + G V +
Sbjct: 61 EISDRDAAQLLRGYTIEIKRSDFEPAR--EGEYYWADLVGLTVHNRQNELIGTVNSLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA IL + + LIPF + V+L++ I+ D GL+
Sbjct: 119 GAHDILVVDGEHGRK-LIPFVDHYIDNVDLEQGSIIAD---WGLD 159
>gi|262089685|gb|ACY24780.1| RimM 16S rRNA processing protein [uncultured organism]
Length = 179
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M LV + I +G+ G V + SY + +L Y + + +++ I +
Sbjct: 1 MSAESNLVNVGRITAVYGVKGWVKVHSYTDPQENLFEYHPWFLKTKHGVKKIEIDEARPH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QG-- 113
F+A GID+ A + + EL++ E++ + LE + F + G
Sbjct: 61 GDAFVAHIVGIDDRDLALQYTAADIAVDSDLLP--ELDDGEYYWSQLEGLVVFAQFDGGE 118
Query: 114 -KYWGQVCGVYNFGAGSILEI----KNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
+ G + + GA +L + ++ ++ LIP+ + VL V+L ++L+D
Sbjct: 119 RQRLGVISKLMETGANDVLVVVADAESIDQRERLIPYVPEQFVLSVDLGAGEMLVD 174
>gi|171463910|ref|YP_001798023.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|209573588|sp|B1XVN2|RIMM_POLNS RecName: Full=Ribosome maturation factor rimM
gi|171193448|gb|ACB44409.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 184
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR------------ 46
L+ L+ + I GL G+V I +++ P+ L L R
Sbjct: 4 PSLNDLIELGAISEAQGLRGQVKIRPHSSEPVALLSSKSVWLSLIPRRDAGLSSPVEQAS 63
Query: 47 --ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
+ ++ + + G+ + A L+ ++ R F E D ++ DL
Sbjct: 64 LTQYKVKSAKMHSGNVVIALEGVTDRDQALALKGARILVARDAFPKVET--DSYYWIDLI 121
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILI 162
+ Q + G+V V GA ++ I + KT +L+PF K V +V+L I +
Sbjct: 122 GCNAINLQNETLGEVIDVTENGAHGVIAIGDASTKTIQYLVPFVKQVVQDVDLSNKTISL 181
Query: 163 D 163
D
Sbjct: 182 D 182
>gi|294085385|ref|YP_003552145.1| 16S rRNA processing protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664960|gb|ADE40061.1| 16S rRNA processing protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 190
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATF 64
+ +A I +HG+ G V I + P L R+ L L+IL +A
Sbjct: 12 ISVAAITGSHGVRGNVKIKPFTETPESLGRFDKVYLEDGQQVALKILSFG-SKGVVLARL 70
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+++ ++ LR LY R D L +DE ++ DL ++ G++ +++
Sbjct: 71 GKVESRDASDALRGQHLYVDRAALPD--LADDEIYHADLLGLDAVLEDDSLLGRIDAIHD 128
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
FGAG+++EI + ++PF+ A++ V L + ++++ P L
Sbjct: 129 FGAGNVVEIIPPQGSSIMLPFSGSALVRVELDKRRVILAPPDGLL 173
>gi|189184234|ref|YP_001938019.1| 16S rRNA-processing protein RimM [Orientia tsutsugamushi str.
Ikeda]
gi|238692020|sp|B3CTT8|RIMM_ORITI RecName: Full=Ribosome maturation factor rimM
gi|189181005|dbj|BAG40785.1| 16S rRNA processing protein RimM [Orientia tsutsugamushi str.
Ikeda]
Length = 164
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M KL+L+ I + +G+ G+V I S+ + ++ Y L ++I +K+
Sbjct: 1 MSSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKI 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I I +A +L KLY + + +L + E++ +L ++ + +G+ G++
Sbjct: 61 ICNIDQIVTRTAAEQLTRTKLYIYKHELP--QLPDSEYYVANLNGIKVKNLEGEIIGKIN 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ N+ AG I+E+ K + PFT ++ E+ ++I P
Sbjct: 119 NICNYNAGDIIEVVYNDGKKIMYPFTNEIFPQI--TEDFVVIVPPE 162
>gi|220910318|ref|YP_002485629.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7425]
gi|219866929|gb|ACL47268.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7425]
Length = 180
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSND--NRELRILKMY--RK 56
+ V + TI GL GEV + ++ P R++ S +R+L+ +
Sbjct: 7 SEWVEIGTIVAAQGLGGEVRVKPDSDFPERFIRPGQRWLQRSPQSLPEPIRLLQGRLLPR 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-Y 115
+I +GI+N A L+ L D +L EF+ DL +E F++ + Y
Sbjct: 67 KGIYILKLAGIENRTQAEALKGSLLLVPHSDRP--KLAPGEFYLQDLLGLEVFEQGNQTY 124
Query: 116 WGQVCGVYNFGAGSILEIKNT--MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + GV G +LE++ LIP + V ++L ++ I+P L
Sbjct: 125 VGVITGVIPAG-NDLLEVQPPQADRPPVLIPLVREIVPLIDLGAQRVEINPPPGLL 179
>gi|260220798|emb|CBA28721.1| Ribosome maturation factor rimM [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 197
Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELR-------ILKMY 54
+ + I G+ G + Y+ NP L Y+L + + + +
Sbjct: 23 DAIEVGRIADAWGIKGWFKVLPYSANPEALFSARQWYLLPTEKGNKPFSGTALMAVKESK 82
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ +A +GID+ + A L+ +++ R F DEF+ DL ++ +R+ +
Sbjct: 83 VHSDSVVACAAGIDDRNGAEALKGSRIFISRATFPKA--AADEFYWVDLIGLQVVNREAQ 140
Query: 115 YWGQVCGVYNFGAGSILEIK---NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G V + + G ++L I+ + +IPF V +V+L + I +D
Sbjct: 141 ALGIVRELMSTGPQTVLVIEAMQDDKPVERMIPFVSAYVDDVSLTDKTIRVD 192
>gi|240080061|ref|ZP_04724604.1| 16S rRNA-processing protein [Neisseria gonorrhoeae FA19]
gi|240122851|ref|ZP_04735807.1| 16S rRNA-processing protein [Neisseria gonorrhoeae PID332]
Length = 160
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVVNGELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GID+ SA LR + R+ F E EDE++ DL M ++ G+V +
Sbjct: 61 GIDDRDSAFSLRGYTIEIPREAFAPTE--EDEYYWADLVGMTVVNKDDTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA IL I + LIPF + V+ I D GL+
Sbjct: 119 GANDILMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 159
>gi|78183760|ref|YP_376194.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9902]
gi|109893062|sp|Q3B0H7|RIMM_SYNS9 RecName: Full=Ribosome maturation factor rimM
gi|78168054|gb|ABB25151.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9902]
Length = 180
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 11/175 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDN-RELRILKMYRKNK 58
L++ + + I GL GE+ ++ ++ P R+V RE+++ +
Sbjct: 8 LEEWLTVGKIVGVQGLQGELRVNPASDFPERFTVPGPRWVRSKGSPPREMQLKTGRQLPG 67
Query: 59 R--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKY 115
+ F+ +DN +A L D +L E EF DL +E
Sbjct: 68 KSLFVVRLDSVDNRDAAEALVGSDWMVPADDRP--QLGEGEFHLLDLVGLEARLSPDSDP 125
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +LEIK T LIPF + V EV+L++ +L+ P ++
Sbjct: 126 IGTVTDLIS-GGNDLLEIKRTDGSKLLIPFVEAIVPEVHLKDGWLLLTPPPGLMD 179
>gi|306823689|ref|ZP_07457064.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|309802986|ref|ZP_07697087.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
gi|304553396|gb|EFM41308.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|308220453|gb|EFO76764.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
Length = 199
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + E + R+I
Sbjct: 14 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPGAVLYTKDGEEEYVVEHSRTFKNRWII 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ--------GK 114
F GIDN S+ LY + D +E L+ DE++ DL +E G
Sbjct: 74 KFEGIDNRDSSEAANGTVLYGEADD-PEEMLQADEWYPKDLIGLEARLADDNTLGLEPGM 132
Query: 115 YWGQVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKILIDP 164
G+V V A +L+I+ E + L+PF V +++L+E + ++P
Sbjct: 133 AIGKVVDVIEV-AQWLLKIRLANPVRDADGVVVENSALVPFVDELVPDIDLEEGYLTLNP 191
Query: 165 IAAGL 169
+
Sbjct: 192 PGGLI 196
>gi|260072707|gb|ACX30603.1| rRimM protein [uncultured bacterium ARCTIC96BD-19]
Length = 172
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
+K +L+ I G+ G V + SY +++ Y + + +++ I ++K
Sbjct: 9 EKKLLVGKINGFFGIQGWVKVFSYTEPRVNILSYTPWSIDLDGELKKIEIKTGREQSKTI 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A GID + +L +Y ++ +L++ E++ +L E ++ + +G V
Sbjct: 69 VAHIKGIDTREESQKLIGKDIYIDKEQLP--KLKKGEYYWHELIGFEVLNQDKEKFGLVD 126
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ ++L +K +K IP+ K ++ V+ I +D
Sbjct: 127 YFVETGSNNVLVVK--GKKERWIPYIKPYLVSVDSFNKVIFVD 167
>gi|225870640|ref|YP_002746587.1| 16S rRNA processing protein [Streptococcus equi subsp. equi 4047]
gi|254797762|sp|C0M749|RIMM_STRE4 RecName: Full=Ribosome maturation factor rimM
gi|225700044|emb|CAW94083.1| 16S rRNA processing protein [Streptococcus equi subsp. equi 4047]
Length = 172
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 84/174 (48%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + R L+ + +R E+ I + +
Sbjct: 2 EYFSVGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQ 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I++ + + L +++ +L E EF+ + +E +++ + G+
Sbjct: 62 FDIIKFKGMYHINAIEQFKGYSLKIAKEN--QGKLAEGEFYYHQIIGLEVYEKD-QLVGE 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V+++++++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRQSKRDLLLPYIPSVVLCVDIEKHRVDVE-IMEGLDDE 171
>gi|319745250|gb|EFV97568.1| 16S rRNA processing protein RimM [Streptococcus agalactiae ATCC
13813]
Length = 172
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S + + + L+ N+ ++ I ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKGQELALFDEKNQFVMDIEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L D L++ EF+ ++ ++ ++ + + G+
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFTLKVAENQLSD--LKDGEFYYHEIIGLDVYEGE-ELIGK 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + ++ ++ L+P+ VLEV+L ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVERHGKRDLLLPYIPPVVLEVDLSNQRVQVELMEGLDDED 172
>gi|330945958|gb|EGH47284.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 156
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 20 NGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKRFIATFSGIDNIHSAS 74
GEV + S+ + N +D + L ++++ ++ ++K + G+D+ A
Sbjct: 1 RGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKFLVTKLKGLDDREEAR 60
Query: 75 ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIK 134
L ++ R F D L++ E++ LE ++ D+ G+ G++ + G+ ++ +K
Sbjct: 61 LLSGYEICVPRNLFPD--LDDGEYYWYQLEGLKVIDQLGQLLGKIDHLLETGSNDVMVVK 118
Query: 135 NTME----KTFLIPFTKFAVLEVNLQENKILID 163
+ L+P+T+ VL +++ ++ +D
Sbjct: 119 PCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 151
>gi|307708977|ref|ZP_07645437.1| 16S rRNA processing protein RimM [Streptococcus mitis SK564]
gi|307620313|gb|EFN99429.1| 16S rRNA processing protein RimM [Streptococcus mitis SK564]
Length = 172
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGE-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDEN 172
>gi|157803912|ref|YP_001492461.1| 16S rRNA-processing protein RimM [Rickettsia canadensis str.
McKiel]
gi|166226474|sp|A8EZ93|RIMM_RICCK RecName: Full=Ribosome maturation factor rimM
gi|157785175|gb|ABV73676.1| 16S rRNA-processing protein [Rickettsia canadensis str. McKiel]
Length = 165
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G + + S+ + L + + I + + K
Sbjct: 1 MNSLENLILVGVIKSCHGIKGHIILKSFTIPTTKILERNLVNESQENINIKLISQNAKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I TF+ I + A L+ KL+ R ELEEDEF+ DL + D+ K G++
Sbjct: 61 LICTFNDISTRNEAENLKGYKLFCLRASLP--ELEEDEFYIADLNHLTILDQDHKKVGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+EI+ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEIEFLDQTTELLPFNKQFFPVI 152
>gi|332528267|ref|ZP_08404272.1| 16S rRNA-processing protein RimM [Hylemonella gracilis ATCC 19624]
gi|332042287|gb|EGI78608.1| 16S rRNA-processing protein RimM [Hylemonella gracilis ATCC 19624]
Length = 193
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR--------ELRILKMY 54
+ + I G+ G + Y+ +P L R+ L ++ L + +
Sbjct: 18 DAIEVGRILDAWGIKGWFKVLPYSASPEALFTSKRWFLMPSEKGAKTFDGVVRLAVKEAK 77
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ +AT + + +A LR +++ R F +DE++ DL ++ +R+
Sbjct: 78 EHSDSVVATAHEVTDRSAAEALRGARIFVSRSSFPTP--NQDEYYWVDLLGLDVVNRESV 135
Query: 115 YWGQVCGVYNFGAGSILEIK--NTMEK--TFLIPFTKFAVLEVNLQENKILID 163
GQV + + G ++L I K +IPF V V+L +I +D
Sbjct: 136 LLGQVRDLQSTGPQTVLVIAYDGPDGKPAERMIPFVSAYVDGVDLAARRISVD 188
>gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1]
gi|300073623|gb|ADJ63022.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1]
Length = 204
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 32/190 (16%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSND--NRELRILKMYRKNK 58
D LV + + +G+ G + + Y++ L + L + +++ +++ +
Sbjct: 12 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSG 71
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+A +G+ + ++A ++ + R+ F L+++EF+ DL + QG++ G
Sbjct: 72 DVVARLTGVADRNAAEAMKGTVVSISRKHFPA--LDDNEFYWVDLIGSAVENLQGEHLGV 129
Query: 119 VCGVYNFGAGSILEI-------------------------KNTMEKTFLIPFTKFAVLEV 153
V + + GA IL++ K+ LIPF V V
Sbjct: 130 VSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTV 189
Query: 154 NLQENKILID 163
E KI++D
Sbjct: 190 QQSEKKIIVD 199
>gi|89098668|ref|ZP_01171550.1| 16S rRNA-processing protein [Bacillus sp. NRRL B-14911]
gi|89086630|gb|EAR65749.1| 16S rRNA-processing protein [Bacillus sp. NRRL B-14911]
Length = 186
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKNKR 59
K + I THG+ GEV + S + P + + ++ + +++ +K +R++K
Sbjct: 17 KWFNVGKIVNTHGVRGEVRVVSRTDFPEERYKAGSHLFLFQAGSKEPVKLTVKTHRQHKS 76
Query: 60 F-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F + TF G+D+++ A +L+ L +LEE+E++ ++ + G+
Sbjct: 77 FDLLTFEGLDSLNEAEKLKGAILKVSEDQL--GQLEENEYYFHEILGCTVKTIDEEEIGE 134
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + GA + + +K LIP+ + V +V+++E I+I+P+ L
Sbjct: 135 ITEILTPGANDVWVVSKKGQKDILIPYIEDVVKKVDVKEKVIIIEPMEGLL 185
>gi|218438369|ref|YP_002376698.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 7424]
gi|218171097|gb|ACK69830.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7424]
Length = 207
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 42/206 (20%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRIL----KMYR 55
+D + + TI GL GEV + S ++ P R++L N + + +
Sbjct: 1 MDDWLEIGTIVAPQGLKGEVRVASESDFPERFEQPGKRWLLPPNSVQVQEVELLNGRYIP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
K ++ +GID+I A ELR K+ K+ D +LEEDE+ DL +E + + G+
Sbjct: 61 GKKIYVVQLAGIDHIDRAEELRGYKILVKKSDRP--QLEEDEYHVADLVNLEVYHQLTGE 118
Query: 115 YWGQVCGVYNFGAGSILEI------------------------------KNTMEKTFLIP 144
G V + + G +LE+ K T LIP
Sbjct: 119 NLGIVTDILSAG-NDLLEVTLHQQPEREEKPEPDLSKVSRKSKLRKLKPKQRKPATLLIP 177
Query: 145 FTKFAVLEVNLQENKILIDPIAAGLN 170
F K V V+L+ +I I P L
Sbjct: 178 FVKEIVPIVDLKTGRIEIKPPPGLLE 203
>gi|227495316|ref|ZP_03925632.1| 16S rRNA processing protein RimM [Actinomyces coleocanis DSM 15436]
gi|226831186|gb|EEH63569.1| 16S rRNA processing protein RimM [Actinomyces coleocanis DSM 15436]
Length = 176
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 8/177 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG H L GEV ++ + + P + ++ L + + R
Sbjct: 3 LTVAEIGAAHALKGEVLLNLHTDVPEERIYPGAQFRTVPAGRGPLTVDTIRVHKGRLAVR 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+G + ++A LR KL DF + ELEED ++ +L + G G+V +
Sbjct: 63 FAGHADRNAAEALRSTKLVI---DFDEVELEEDAWYADELIGFKALHVNGTELGEVSDLI 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYD 180
A +LEIK + L+PF + V ++ + +L+DP + + +
Sbjct: 120 LGDAQDLLEIKY-QGRKVLVPFVEELVPVIDEEAETVLLDPPGGLFDEDFVTTAAPE 175
>gi|289423978|ref|ZP_06425770.1| 16S rRNA processing protein RimM [Peptostreptococcus anaerobius
653-L]
gi|289155614|gb|EFD04287.1| 16S rRNA processing protein RimM [Peptostreptococcus anaerobius
653-L]
Length = 171
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 7/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILK-MYRK 56
M K + + TT GL G++ + SY +N + + + ++ ++ K
Sbjct: 1 MSKDIEYFRIGKFVTTRGLKGDLKVYSYTDNIDRFKELDYFYIGKDRTKKYQVEKTSKIS 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N + D I S LY R + EL++DE D+ M+ G+Y
Sbjct: 61 NDMVVIKIKSYDTIESVQAFIQKDLYVDRSN--TYELDDDEMLIVDMIGMKVETVDGEYI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + A + +K + K FLIP T V +++ + I + PI L+
Sbjct: 119 GELKEVLQYSANDVYIVKGSD-KEFLIPATYEIVPKIDKEARIIKVKPIPGLLD 171
>gi|270292545|ref|ZP_06198756.1| 16S rRNA processing protein RimM [Streptococcus sp. M143]
gi|270278524|gb|EFA24370.1| 16S rRNA processing protein RimM [Streptococcus sp. M143]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR--ELRILKMYRKNKR 59
+ I T GL GE+ + S + + + L+ ++ + I+ +RK+K
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVIIANHRKHKN 61
Query: 60 F-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVQVEILEGLDDED 172
>gi|313901161|ref|ZP_07834649.1| 16S rRNA processing protein RimM [Clostridium sp. HGF2]
gi|312954119|gb|EFR35799.1| 16S rRNA processing protein RimM [Clostridium sp. HGF2]
Length = 167
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
+ + + THGL GE+ + + P + ++ + +L++ + + +
Sbjct: 4 INIGMLVNTHGLRGEMKVKVLTDFPQLRFQKGAVVHLQLAQGQFDLKVQHVRESKGQLLV 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G D+I+ + L + ++ +EL+E E + +L++ +D +G G V +
Sbjct: 64 KFEGYDDINQVEGWKGSMLTIREEEL--QELDEFEAYFHELQDAVVYDMEGVQLGTVSEI 121
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
GA +IL +K K LIPF + V E + + + ++ +
Sbjct: 122 IETGANAILRVKTKD-KDILIPFVRAFVKEFDRKNKVMKVELMEGL 166
>gi|332359632|gb|EGJ37449.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK355]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLRIDIEQGRVDVE-IPEGLDDE 171
>gi|322375432|ref|ZP_08049945.1| 16S rRNA processing protein RimM [Streptococcus sp. C300]
gi|321279695|gb|EFX56735.1| 16S rRNA processing protein RimM [Streptococcus sp. C300]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ ++ ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLDVYEGD-NLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVEVEILEGLDDED 172
>gi|322389630|ref|ZP_08063178.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
903]
gi|321143629|gb|EFX39059.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
903]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ I S + + + L+ +R + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRILSVTDFADERFKKGAELALFDEKDRFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D LE+ EF+ ++ ++ ++ + GQ
Sbjct: 62 FDIIKFKDMYHINAIEKFKGFSLKVAEEDLTD--LEDGEFYYHEIIGLDVYEND-QLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++ N++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVDILEGLDDED 172
>gi|319946982|ref|ZP_08021216.1| 16S rRNA processing protein RimM [Streptococcus australis ATCC
700641]
gi|319747030|gb|EFV99289.1| 16S rRNA processing protein RimM [Streptococcus australis ATCC
700641]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L D D L+E EF+ ++ ++ ++ GQ
Sbjct: 62 FDIIKFKDMYHINAIEKFKGFSLKVAEGDLTD--LDEGEFYYHEIIGLDVYEND-NLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++ N++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLSIDIPGNRVDVDILEGLDDED 172
>gi|332362172|gb|EGJ39974.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK49]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ +R ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDRFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E + G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVY-EDDVLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|125718119|ref|YP_001035252.1| 16S rRNA-processing protein RimM [Streptococcus sanguinis SK36]
gi|166226482|sp|A3CNE7|RIMM_STRSV RecName: Full=Ribosome maturation factor rimM
gi|125498036|gb|ABN44702.1| RimM protein, required for 16S rRNA processing, putative
[Streptococcus sanguinis SK36]
Length = 172
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + N+ L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNKLALFDKKDQFVMDVEIASHRKAKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFSLKVAEEDLAD--LEDGEFYYHEIIGLEVYEND-VLLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDDE 171
>gi|124266297|ref|YP_001020301.1| 16S rRNA-processing protein RimM [Methylibium petroleiphilum PM1]
gi|166226450|sp|A2SES7|RIMM_METPP RecName: Full=Ribosome maturation factor rimM
gi|124259072|gb|ABM94066.1| 16S rRNA processing protein RimM [Methylibium petroleiphilum PM1]
Length = 193
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 27/189 (14%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE-----------LR 49
+ + + I G+ G + + ++++P L R+ L + LR
Sbjct: 9 PEDAIEVGRIVDAWGIKGGIKVLPFSSDPQALFSSRRWFLRPPEKPMGPKAAKPLPTLLR 68
Query: 50 ILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF 109
I + +AT + + ++A LR ++ R F ++ DE++ DL +
Sbjct: 69 ITNAREQGDVIVATAQDVADRNAAEALRGCSVFVSRASFPTADV--DEYYWIDLIGLAVV 126
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
+R+G+ G V + + GA S+L + ++E+ LIPF + V+L++ I
Sbjct: 127 NREGQALGNVADLLDTGAHSVLRVTQVETDDQGRSLERERLIPFVAAYIDAVSLEQRCIT 186
Query: 162 IDPIAAGLN 170
+D GL+
Sbjct: 187 VD---WGLD 192
>gi|291456064|ref|ZP_06595454.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213]
gi|291382473|gb|EFE89991.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213]
Length = 204
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ +A IG GL GEV + Y ++P + + + + E + R+I
Sbjct: 14 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVENSRTFKDRWIL 73
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG- 121
G D+ +A L ++LY + D ++ LE DE++ DL +E +G G G
Sbjct: 74 KLEGTDDRTAAEALNGVELYGEADDAEEM-LEADEWYPKDLIGLEARLSEGNGLGLPAGQ 132
Query: 122 -------VYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQENKI 160
V + A S+L+I+ + +EKT L+PF + V E++L E +
Sbjct: 133 VVGKVVDVVDSPAQSLLKIRLVEPVVTGQDSKGEDVIEKTALVPFVEALVPEIDLDEQYL 192
Query: 161 LIDPIAAGL 169
+DP +
Sbjct: 193 TLDPPGGLI 201
>gi|87301734|ref|ZP_01084574.1| 16S rRNA-processing protein [Synechococcus sp. WH 5701]
gi|87283951|gb|EAQ75905.1| 16S rRNA-processing protein [Synechococcus sp. WH 5701]
Length = 192
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN-RELRILKMYRKNK 58
+ +++ + GL GE+ + + P R ++ + + R +R+L +
Sbjct: 18 PEAWLVVGKVVAAQGLQGELRVVPRTDFPERFTRPGQRWLRRAQEPARAVRLLSGRQLPG 77
Query: 59 R--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKY 115
R F+ G+ A L L + D L+E EF DL+ ++ G+
Sbjct: 78 RELFVVRLEGVGTREEAEALVHQDLLVEAGDRPR--LQEGEFHLLDLQGLQVRLAPHGEV 135
Query: 116 WGQVCGVYNFGAGSILEIKNTME--KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + G +LE++ + E + LIPF + V V++ + I P L+
Sbjct: 136 IGTVVDLIHAG-NDLLEVELSGEQPRRALIPFVEAIVPRVDIAGGWLEITPPPGLLD 191
>gi|223932095|ref|ZP_03624099.1| 16S rRNA processing protein RimM [Streptococcus suis 89/1591]
gi|302023714|ref|ZP_07248925.1| 16S rRNA-processing protein RimM [Streptococcus suis 05HAS68]
gi|330832750|ref|YP_004401575.1| 16S rRNA processing protein [Streptococcus suis ST3]
gi|223899076|gb|EEF65433.1| 16S rRNA processing protein RimM [Streptococcus suis 89/1591]
gi|329306973|gb|AEB81389.1| 16S rRNA processing protein [Streptococcus suis ST3]
Length = 172
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + ++ E+ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDKDQFVMEVEIANHRKAKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L ++ D LE+ EF+ ++ ++ ++ GQ
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFSLKIAEENLTD--LEDGEFYYHEIIGLDVYEND-ILIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K +K L+P+ VL +++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRVDVELLEGLDDEN 172
>gi|325687583|gb|EGD29604.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK72]
Length = 172
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKEQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|195978232|ref|YP_002123476.1| 16S rRNA-processing protein RimM [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|238689819|sp|B4U396|RIMM_STREM RecName: Full=Ribosome maturation factor rimM
gi|195974937|gb|ACG62463.1| 16S rRNA processing protein RimM [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 172
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + R L+ + +R E+ I + +
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFTEERFQKGARLALFDDKDRFVQEVEIASHRKHKQ 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I++ + + L ++ +L E EF+ + +E +++ + G+
Sbjct: 62 FDIIKFKGMYHINAIEQFKGYNLKIAKEH--QGKLAEGEFYYHQIIGLEVYEKD-QLVGE 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V+++++++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRQSKRDLLLPYIPSVVLCVDIEKHRVDVE-IMEGLDDE 171
>gi|313888498|ref|ZP_07822165.1| 16S rRNA processing protein RimM [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845527|gb|EFR32921.1| 16S rRNA processing protein RimM [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 167
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%)
Query: 1 MVKLDKLV-LMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKN 57
M + + + I THG+ GE+ +D Y + ++ V D +E I K+ N
Sbjct: 1 MKNIKDSITCIGKIINTHGIKGELKVDPYTFDKKRFSKLESVFVGEDLKEFFIKKVRV-N 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+F G +NI+ L+ +Y K +D ELEED+++ +DL E +D G Y G
Sbjct: 60 DFVYLSFEGYENINDVLNLKGFNIYIKDED--RLELEEDQYYVSDLIGKEVYDTDGNYIG 117
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ V + A I I+ + T+ +P K + ++ + I I I +
Sbjct: 118 VLKEVLEYPANDIFVIEGKDKGTYQVPGVKEFIKNID---STITIKLIEGMI 166
>gi|262282893|ref|ZP_06060660.1| ribosome maturation factor rimM [Streptococcus sp. 2_1_36FAA]
gi|262261145|gb|EEY79844.1| ribosome maturation factor rimM [Streptococcus sp. 2_1_36FAA]
Length = 172
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMNVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKYRDFSLKVAEEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +N+++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGINIEQGRVDVE-IPEGLDDE 171
>gi|296116584|ref|ZP_06835194.1| 16S rRNA processing protein RimM [Gluconacetobacter hansenii ATCC
23769]
gi|295976796|gb|EFG83564.1| 16S rRNA processing protein RimM [Gluconacetobacter hansenii ATCC
23769]
Length = 185
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 4 LD-KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+D +LM +G HG+ G V + SYA P DL RY +++ L + +
Sbjct: 1 MDRDRILMGVVGRPHGVRGLVRVHSYAAVPEDLARYGALRDEHGNAWHLSWRGQGIAELR 60
Query: 63 TFSG--IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---WG 117
+G + + A +L + KLY R D E EEDEF+ DL M+ ++ G G
Sbjct: 61 NDAGQALSSREDAQKLVNRKLYVGRVDLP--EPEEDEFYVADLVGMQVIEQAGTPLHELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
V V+++GAG LEI T L+PFT+ V V++ +I + ++ P
Sbjct: 119 HVRLVHDYGAGVSLEITGQGG-TILLPFTRACVPVVDMGARRIEVVLP------DEVEVP 171
Query: 178 QYDCPLDSAGKK 189
P D A +
Sbjct: 172 AEFFPGDGAAEP 183
>gi|198284556|ref|YP_002220877.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198249077|gb|ACH84670.1| 16S rRNA processing protein RimM [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 160
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATFSGI 67
+ + +G+ G V + S+ + + Y + D R + + + +A + +
Sbjct: 2 LGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPDRRPWVLEDGRMQGEGVVAKLAQV 61
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
++ A L ++ R D EL EF+ + L + +R+G G V GA
Sbjct: 62 EDREQARALIGQEIAVIRADLP--ELGAGEFYWSTLTGLRVLNREGIVLGTVSAFLETGA 119
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
++ I + LIP++ A V+L +I++D
Sbjct: 120 NDVMVIDDGKGGELLIPWSAEASAGVDLPAGQIVVD 155
>gi|332701667|ref|ZP_08421755.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
gi|332551816|gb|EGJ48860.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRE--LRILKMYR 55
M + VL+ + +HGL GE + YA++P+ L+ L + R +I
Sbjct: 1 MPDTE-WVLIGEVAKSHGLKGEFSVKYYADSPLLLDEVGHVWLSTAGGRPKRFQIRAWRG 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + +GID A + R ++ K + E E + DL+ + G
Sbjct: 60 HQDRVLLWLTGIDGRDQADDWRGAEVLLKESELPAPE--EGGVYLHDLQGLTVLLEDGSR 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + I + L P V ++L+ + I P L+
Sbjct: 118 LGTITDFILEP-QELWSITTDKGEEVLFPAVPELVPNIDLEAGTVTIAPPPGLLD 171
>gi|298489745|ref|YP_003719922.1| 16S rRNA processing protein RimM ['Nostoc azollae' 0708]
gi|298231663|gb|ADI62799.1| 16S rRNA processing protein RimM ['Nostoc azollae' 0708]
Length = 217
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRKN 57
+ + I GL GE+ + + P R++L + I +
Sbjct: 37 DWLEIGKIVAPQGLAGELRVYPNTDFPERFEESGTRWLLRPGEMEPQPIELLDGRYVEGK 96
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYW 116
++ G+ + +A +RD +L+ D E+EE EF DL ++ F ++ G++
Sbjct: 97 NLYVIKLEGVSDRTAAENIRDCRLFVPISDRP--EVEEGEFHVIDLLALQVFMQETGQFV 154
Query: 117 GQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G V + G +LE+K + KT LIPF V V+L+ ++ I P L
Sbjct: 155 GTVVDILPSG-HDLLEVKFDPAFAEDKAGKTVLIPFVIEIVPIVDLETRRVEITPPPGLL 213
>gi|319938980|ref|ZP_08013344.1| ribosome maturation factor rimM [Streptococcus anginosus 1_2_62CV]
gi|319812030|gb|EFW08296.1| ribosome maturation factor rimM [Streptococcus anginosus 1_2_62CV]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + + I +
Sbjct: 2 NYYNVGKIVNTQGLQGEMRVMSVTDFAEERFKKGSVLALFDKKDNFVMNVEIASHRKMKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L +D D L+E EF+ ++ M +++ G
Sbjct: 62 FDIVKFKGMYHINDIEKYRDFTLKVAEEDLSD--LDEGEFYYHEIIGMNVYEQD-VLIGA 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL ++L+ +++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDLENSRVDVE-IPEGLDDE 171
>gi|148655438|ref|YP_001275643.1| 16S rRNA processing protein RimM [Roseiflexus sp. RS-1]
gi|172048081|sp|A5USU0|RIMM_ROSS1 RecName: Full=Ribosome maturation factor rimM
gi|148567548|gb|ABQ89693.1| 16S rRNA processing protein RimM [Roseiflexus sp. RS-1]
Length = 182
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 6/176 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---LYSNDNRELRILKMYRKN-KRF 60
D+++L+ + GL GE+ I + + L R+V + R + +++
Sbjct: 9 DEVLLIGKVIDAFGLRGEIKIRAITDQVDHLRRHVRTVFLGEERRPFTLQRVHEPKAGIL 68
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I + G+ + +A LR ++ + D L++DE+F L + + G G V
Sbjct: 69 ILSLGGVTDRTTAEALRGAEVTIRECD--AAPLDQDEYFIHQLYGLRVIESGGGEIGVVR 126
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
V GA ++ ++ L+P V +++ +I++ + +++ +
Sbjct: 127 EVVQTGANDVIVVERQGRSDTLLPMIHDVVERLDVAAGQIVVRLLPGLIDDDNQEG 182
>gi|50914020|ref|YP_059992.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS10394]
gi|139473979|ref|YP_001128695.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes str.
Manfredo]
gi|59798613|sp|Q5XCQ4|RIMM_STRP6 RecName: Full=Ribosome maturation factor rimM
gi|166226481|sp|A2RF49|RIMM_STRPG RecName: Full=Ribosome maturation factor rimM
gi|50903094|gb|AAT86809.1| 16S rRNA processing protein [Streptococcus pyogenes MGAS10394]
gi|134272226|emb|CAM30478.1| 16S rRNA processing protein [Streptococcus pyogenes str. Manfredo]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDQFVQEVTIVSHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKAN--QGDLQEGEFYYHQIIGMAVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLSVDVPNKRVDVELMEGLDDED 172
>gi|327460228|gb|EGF06565.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1057]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLAD--LEDGEFYYHEIIGLEVYEND-VLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|327474393|gb|EGF19799.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK408]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ ++ ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLKVYEND-ILLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|163814206|ref|ZP_02205598.1| hypothetical protein COPEUT_00360 [Coprococcus eutactus ATCC 27759]
gi|158450655|gb|EDP27650.1| hypothetical protein COPEUT_00360 [Coprococcus eutactus ATCC 27759]
Length = 181
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
+ + + I ++HG+ GEV + ++ Y+ + E+
Sbjct: 6 EDRLRVGVITSSHGIKGEVKVYPTTDDNDRFKTLEKCYLSNGRETLEVNCTSCKFLKNMV 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F DNI+ ++ + R+D L + EFF D+ + + +D+ ++ G +
Sbjct: 66 ILKFEEYDNINDIERFKNYDILVDRED--AVPLMDGEFFICDVLDADVYDQNDEHIGILD 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V A + +K LIP V +V+ + K+ +
Sbjct: 124 DVLETPANDVFVVKKDDGGELLIPVVSDFVYDVDTENRKVKVR 166
>gi|113478011|ref|YP_724072.1| 16S rRNA-processing protein RimM [Trichodesmium erythraeum IMS101]
gi|123351730|sp|Q10VX5|RIMM_TRIEI RecName: Full=Ribosome maturation factor rimM
gi|110169059|gb|ABG53599.1| 16S rRNA processing protein RimM [Trichodesmium erythraeum IMS101]
Length = 208
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 46/210 (21%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRIL----KMYR 55
+ + + + I GL G++ + ++ P R++L + I +
Sbjct: 1 MSEWIEIGKIVAPQGLKGDLRVYPSSDFPERFTEPGKRWLLSPGQVEPISIELLSGRYVP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
++ +GI + A LR+ +L ++ D +LE DEF+ DL + ++ GK
Sbjct: 61 GKGLYVIELAGIKSRQQAEALRNSQLLIEKGDRP--QLEADEFYVPDLIGLTVINQLNGK 118
Query: 115 YWGQVCGVYNFGAGSILEIK----------------------------------NTMEKT 140
G+V + F +LE++ + K
Sbjct: 119 TIGKVINII-FAGNDLLEVEKISTDTPVISEVVENNLPSKSKRSRDTKNQKKNQSPPSKK 177
Query: 141 FLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
LIPF K V VN +++ I I P ++
Sbjct: 178 ILIPFVKEIVPIVNFEQSIIEITPPDGLID 207
>gi|76787824|ref|YP_329996.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae A909]
gi|109893056|sp|Q3K0F7|RIMM_STRA1 RecName: Full=Ribosome maturation factor rimM
gi|76562881|gb|ABA45465.1| 16S rRNA processing protein RimM [Streptococcus agalactiae A909]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S + + + L+ N+ ++ I ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKGQVLALFDEKNQFVMDIEIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + + L D L++ EF+ ++ + ++ + + G+
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFTLKVAEDQLSD--LKDGEFYYHEIIGLGVYEGE-ELIGK 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + ++ ++ L+P+ VLEV+L ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVERHGKRDLLLPYIPPVVLEVDLSNQRVQVELMEGLDDED 172
>gi|329947883|ref|ZP_08294815.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 170
str. F0386]
gi|328523507|gb|EGF50605.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 170
str. F0386]
Length = 180
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 6/179 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A IG H L GEV ++ ++P L + ++ R+ A
Sbjct: 2 LLTLAVIGPAHALKGEVRLEIRTDDPEGRLAPGTAVPTEPTQVGPLTVSRLRFDGSRWFA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE--FFNTDLEEMETFDRQGKYWGQVC 120
TF + +A LR ++L + D + EE E ++ +L + G+ G+V
Sbjct: 62 TFEQARDRTAAEALRGVRLLVETDDEAPGDTEETEESWYRHELVGLRALSASGEALGEVT 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+ A L + + +PF V ++ + + +DP
Sbjct: 122 DLEPGIAQDRLVVTTSGGDEVAVPFVAALVPAIDPEAGTVTLDPPGGLFPGRGQVEETR 180
>gi|324992791|gb|EGC24711.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK405]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E + G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVY-EDDVLLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|237649420|ref|ZP_04523672.1| 16S rRNA-processing protein [Streptococcus pneumoniae CCRI 1974]
gi|237821918|ref|ZP_04597763.1| 16S rRNA-processing protein [Streptococcus pneumoniae CCRI 1974M2]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVDILEGLDDED 172
>gi|302874780|ref|YP_003843413.1| 16S rRNA processing protein RimM [Clostridium cellulovorans 743B]
gi|307690604|ref|ZP_07633050.1| 16S rRNA-processing protein RimM [Clostridium cellulovorans 743B]
gi|302577637|gb|ADL51649.1| 16S rRNA processing protein RimM [Clostridium cellulovorans 743B]
Length = 164
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 2/163 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + + I HGL GE + ++ N+ +E + + ++ I
Sbjct: 1 MVEFLAVGIITNVHGLKGEFKVKPLTDDIRRFNKLKKVFIKGKEYNVSWCKLQPQKVIVK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID + A ++ + R++ +L E +F DL D GK G + V
Sbjct: 61 VEGIDTVEEAMRYKNEYMQVDREN--AIKLPEGRYFVADLIGCNVVDHNGKDEGVIKDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+ + + LIP V +++++ I I P+
Sbjct: 119 FTGSNDVYWSIREGREDLLIPVIDPVVDTIDIEKRVITIQPVE 161
>gi|323351452|ref|ZP_08087108.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
gi|322122676|gb|EFX94387.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
Length = 172
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|217967917|ref|YP_002353423.1| 16S rRNA processing protein RimM [Dictyoglomus turgidum DSM 6724]
gi|217337016|gb|ACK42809.1| 16S rRNA processing protein RimM [Dictyoglomus turgidum DSM 6724]
Length = 166
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSND---NRELRILKMYRKNKR 59
+V +A +G G+ G + I + + L + Y+ + + REL + + NK
Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIDTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ FS I+ A ++R L + +D +L E +++ + + ++ G+Y G+V
Sbjct: 61 YVIYFSEIETREDAEKIRGNWLLIEEEDLP--KLPEGQYYTYQIMGLSVYEESGEYLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + ++ E IP K ++E+NL E KI+I +
Sbjct: 119 KEILETGSNDVYIVEGEDE-DIYIPAIKDVIVEINLDEGKIIIRKMEE 165
>gi|148285006|ref|YP_001249096.1| 16S rRNA-processing protein [Orientia tsutsugamushi str. Boryong]
gi|166226461|sp|A5CF62|RIMM_ORITB RecName: Full=Ribosome maturation factor rimM
gi|146740445|emb|CAM80941.1| 16S rRNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 164
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M KL+ + I + +G+ G+V I S+ + ++ Y L ++I +K+
Sbjct: 1 MSSESKLIPIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKI 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I I +A +L KLY + + +L + E++ +L ++ + +G+ G++
Sbjct: 61 ICNIDQIVTRTAAEQLTRTKLYIYKHELP--QLPDSEYYVANLNGIKVKNLEGEIIGKIN 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ N+ AG I+E+ K + PFT ++ E+ ++I P
Sbjct: 119 NICNYNAGDIIEVVYNDGKKIMYPFTNEIFPQI--TEDFVVIVPPE 162
>gi|160901806|ref|YP_001567387.1| 16S rRNA processing protein RimM [Petrotoga mobilis SJ95]
gi|209573586|sp|A9BF00|RIMM_PETMO RecName: Full=Ribosome maturation factor rimM
gi|160359450|gb|ABX31064.1| 16S rRNA processing protein RimM [Petrotoga mobilis SJ95]
Length = 185
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDNREL---RILKMYRKN 57
LD + +A I +HG++GEV I + + +L +LY+ R ++L++ N
Sbjct: 8 LDNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLN 67
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ GI ++ A ++ +++ ++D L +E++ ++ + E + G+Y G
Sbjct: 68 KFFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPS--LNSEEYYWYEILDSEVYYEDGEYVG 125
Query: 118 QVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
+V + GA ++ IKN +K LIP T ++E+ ++ I++ I N T +
Sbjct: 126 KVEEIIQTGANDVISIKNLEDDKEVLIPMTDHYIIELKKEDKSIIVKKIEWYENGTNQAD 185
>gi|332361097|gb|EGJ38901.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1056]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|295094761|emb|CBK83852.1| 16S rRNA processing protein RimM [Coprococcus sp. ART55/1]
Length = 180
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 6/163 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
+ + + I ++HG+ GEV + ++ Y+ + E+
Sbjct: 6 EDRLRVGVITSSHGIKGEVKVYPTTDDNDRFKTLKKCYLSNGRETLEVNCTSCKFLKNMV 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F DNI+ ++ + R+D L + EFF D+ + + +D+ ++ G +
Sbjct: 66 ILKFKEYDNINDIERFKNYDILVDRED--AVPLMDGEFFICDVLDADVYDQNDEHIGILD 123
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V A + +K LIP V +V+ + K+ +
Sbjct: 124 DVLETPANDVFVVKKDDGSEILIPVVPDFVFDVDTENKKVKVR 166
>gi|71066572|ref|YP_265299.1| 16S rRNA processing protein RimM [Psychrobacter arcticus 273-4]
gi|109893036|sp|Q4FQ43|RIMM_PSYA2 RecName: Full=Ribosome maturation factor rimM
gi|71039557|gb|AAZ19865.1| 16S rRNA processing protein RimM [Psychrobacter arcticus 273-4]
Length = 177
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN-RELRILKMYRKNKRFIA 62
L+ + + +G+ G +++ S ++ D+ + + + + L + ++ +A
Sbjct: 10 LMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWRQQGTGVVA 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + + A + + L+ ++ E EDE++ +DL + + Q +Y G + +
Sbjct: 70 QFEQIPDRNVAETMNGVTLWVEQDILP--EPAEDEYYWSDLVTLRVINEQDEYLGDITEM 127
Query: 123 YNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA +I+ + T ++ LIP+ K V++V+L E +L+
Sbjct: 128 FETGAHAIMRVAATSDSLDKEERLIPWHKQTVVKVDLTEKTVLV 171
>gi|312795478|ref|YP_004028400.1| 16S rRNA processing protein rimM [Burkholderia rhizoxinica HKI 454]
gi|312167253|emb|CBW74256.1| 16S rRNA processing protein rimM [Burkholderia rhizoxinica HKI 454]
Length = 219
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDN-RELRILKMYRK 56
D + + + +G+ G + I +A + + L R +++
Sbjct: 42 PDDAIEVGAVVDAYGVKGWLKITPHAGVGSSGGALLRARSWWLVKGGVCRAAQVVSSKAH 101
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G + A LR ++ +R DF LE DE++ DL + + G
Sbjct: 102 SATVVAQLAGCADRDQAFALRGATVHVRRADFPA--LERDEYYWVDLIGLAVVNEFGDAL 159
Query: 117 GQVCGVYNFGAGSILEIKNTM--------EKTFLIPFTKFAVLEVNLQENKILID 163
GQV + + GA SIL ++ + LIPF V V + +I++D
Sbjct: 160 GQVVALMDNGAHSILRVEYDEVGRDGRIKKAQRLIPFVDAYVKTVEPSDRRIVVD 214
>gi|315604547|ref|ZP_07879610.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313559|gb|EFU61613.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 180
str. F0310]
Length = 169
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 9/168 (5%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNKRFIATFSGID 68
A IG HGL GEV +D +++P + + + R L + + +R +A+F +
Sbjct: 6 AIIGPAHGLRGEVILDVRSDDPSVVAPGMRLDVEGASRVLTVRSVRVHKERVLASFEECE 65
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ A LR +L + EED ++ L + G G V G+ A
Sbjct: 66 SREDAERLRGARLLVEEH------PEEDAWYPHQLTGLTARTPAGDVLGTVSGLRLGAAQ 119
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
+L + T ++PF V V++ ++IDP ++
Sbjct: 120 DLLLVDTPA-ATVMVPFVSALVPTVDVDRGVVVIDPPPGLFDDHGDDE 166
>gi|282855358|ref|ZP_06264684.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
gi|282586819|gb|EFB92061.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
Length = 175
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRK--NKRF 60
V++ + THGL GE+ I + P + R+ M F
Sbjct: 7 VVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRDGKHAGSYRVTGMRDALTRGCF 66
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G++ I A LR + + L EF+ +DL +E D +G G V
Sbjct: 67 LAALEGVETIEQAELLRGCSVEIAPDE--RVPLAPGEFWISDLIGLEACDDRGSKLGVVK 124
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + GA ++ +++ K LIP +L +L+ ++ + I
Sbjct: 125 DIVDSGASQLVVVRDDGGKDHLIPAAPEFLLGADLEARRVTLRLIEGL 172
>gi|251782218|ref|YP_002996520.1| 16S rRNA-processing protein RimM [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390847|dbj|BAH81306.1| 16S rRNA processing protein rimM [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127070|gb|ADX24367.1| 16S rRNA-processing protein RimM [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDQFVQEVTIVSHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VFIGH 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED 172
>gi|239814481|ref|YP_002943391.1| 16S rRNA-processing protein RimM [Variovorax paradoxus S110]
gi|239801058|gb|ACS18125.1| 16S rRNA processing protein RimM [Variovorax paradoxus S110]
Length = 184
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 13/169 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR-----ELRILKMYRKN 57
+ + I G+ G + ++ P L R+ L + L I + +
Sbjct: 13 DAIEVGRIADAWGIKGWFKVLPHSAQPEALFSSKRWFLQAPGASATAAFRLAIREAKEHS 72
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+A+ + + ++A LR +++ R F +DE++ DL + +R+G G
Sbjct: 73 DCIVASSEDVPDRNAAEALRGARVFVPRSSFPTA--GDDEYYWVDLIGLPVVNREGVALG 130
Query: 118 QVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILID 163
V + G + L + + ++PF V +V+L I +D
Sbjct: 131 TVRELLATGPQTTLVLAAEEDGKAIERMVPFVSVFVDKVDLAGRLITVD 179
>gi|322376341|ref|ZP_08050834.1| 16S rRNA processing protein RimM [Streptococcus sp. M334]
gi|321282148|gb|EFX59155.1| 16S rRNA processing protein RimM [Streptococcus sp. M334]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ I S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRILSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGE-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED 172
>gi|288922432|ref|ZP_06416620.1| 16S rRNA processing protein RimM [Frankia sp. EUN1f]
gi|288346235|gb|EFC80576.1| 16S rRNA processing protein RimM [Frankia sp. EUN1f]
Length = 214
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 73/214 (34%), Gaps = 49/214 (22%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE---------------- 47
+ + V++ +G HG+ G+V ID + P R+ S R+
Sbjct: 1 MGEPVIVGRVGRPHGVRGDVTIDVRTDLPER--RFAPGSVLGRQAAGDSVTAAGVPAATG 58
Query: 48 ---------------------------LRILKMYRKNKRFIATFSGIDNIHSASELRDLK 80
LR++ + R + F G+ + ++A LR
Sbjct: 59 DSGTGTGGTGTGATSPLGATETSTQPVLRVVTSRWHSGRLLVRFDGVGDRNAAEALRGTL 118
Query: 81 LYAKRQDFKDEELEEDEFFNTD----LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT 136
L + +D+ + L + G G V V + AG +L I
Sbjct: 119 LTIDSDESGPPAEPDDDDGDLWWDRDLVGLRAQTPAGDPLGDVIDVVHSPAGEMLAISRA 178
Query: 137 MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
LIPF + V V+L+ I++DP L+
Sbjct: 179 GGGEHLIPFVREIVPTVDLEAGHIVVDPPPGLLD 212
>gi|284992389|ref|YP_003410943.1| 16S rRNA processing protein RimM [Geodermatophilus obscurus DSM
43160]
gi|284065634|gb|ADB76572.1| 16S rRNA processing protein RimM [Geodermatophilus obscurus DSM
43160]
Length = 177
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 6/151 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSN---DNRELRILKMYRKNKRFI 61
V++ IG HG+ GEV ++ ++P + + D L I + +
Sbjct: 10 DTVVVGRIGRPHGVRGEVTVEVRTDDPDLRFAPGAVLRTEPADRGPLTIAACRWHREVLL 69
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+ + +A ELR+ +L+ D E + D +++ L + G G V
Sbjct: 70 LAIDGVKSREAAEELRNTELHVPVADLPALE-DPDVYYDHQLVGLTARLPDGTELGTVSA 128
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
V + GA +L ++ L+PF V
Sbjct: 129 VRHEGA-DLLVVRRVEGGELLVPFVTAIVPT 158
>gi|16330702|ref|NP_441430.1| 16S rRNA-processing protein RimM [Synechocystis sp. PCC 6803]
gi|3914654|sp|P74035|RIMM_SYNY3 RecName: Full=Ribosome maturation factor rimM
gi|1653194|dbj|BAA18110.1| slr0808 [Synechocystis sp. PCC 6803]
Length = 185
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 14/179 (7%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDN--RELRILKMY-- 54
K + + + TI G+ GEV + S ++ P R++ + + L + K
Sbjct: 10 KTENWLEIGTIVAAQGIQGEVRVLSASDFPARFLTKGQRWIRKTPQETPQPLTLKKGKQI 69
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
+I F+ I + + A L + +L D LE EF TDL + +D G
Sbjct: 70 PGKNLYILRFTEITDRNQAEALVNYQLLVPATD--RLPLEPGEFHVTDLLGLIVYDHDNG 127
Query: 114 KYWGQVCGVYNFGAGSILEIK--NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V Y+ G +L I +K L+PF + V V L E ++ I I L+
Sbjct: 128 DRLGIVTDFYSAG-NDLLGITLDKNPDKEVLVPFVEAIVPTVELAEQRLEIKTIPGLLD 185
>gi|327489778|gb|EGF21568.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1058]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E + G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVY-EDDVLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|324994569|gb|EGC26482.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK678]
gi|327462537|gb|EGF08861.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-LLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|306825029|ref|ZP_07458372.1| 16S rRNA processing protein RimM [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432856|gb|EFM35829.1| 16S rRNA processing protein RimM [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 172
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGTELALFDEKDQFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I+ + + L +D D L++ EF+ ++ ++ ++ + G
Sbjct: 62 FDIIKFKDMYHINVIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLDVYEGE-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVEVEILEGLDDED 172
>gi|158335184|ref|YP_001516356.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
gi|209573538|sp|B0CFM3|RIMM_ACAM1 RecName: Full=Ribosome maturation factor rimM
gi|158305425|gb|ABW27042.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
Length = 192
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND---NRELRILKMYR-- 55
++ + + TI HGLNGEV + ++ P R+++ + E+++++
Sbjct: 18 EEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVE 77
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK- 114
+ ++ + ++ + L+ KL + D L E E++ +DL + D Q +
Sbjct: 78 RKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPT--LAEGEYYLSDLIGVTVVDHQTQA 135
Query: 115 YWGQVCGVYNFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G V + + G +LEI+ + KT L+PF V V++ +I I P +
Sbjct: 136 VVGSVVSLASAG-NDLLEIQLDNTTKTILLPFVSALVPIVDIATKRIEITPPKGLIPE 192
>gi|306829699|ref|ZP_07462888.1| 16S rRNA processing protein RimM [Streptococcus mitis ATCC 6249]
gi|304428050|gb|EFM31141.1| 16S rRNA processing protein RimM [Streptococcus mitis ATCC 6249]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKYKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLHVDIPNKRVEVEILEGLDDED 172
>gi|322392174|ref|ZP_08065636.1| 16S rRNA processing protein RimM [Streptococcus peroris ATCC
700780]
gi|321145074|gb|EFX40473.1| 16S rRNA processing protein RimM [Streptococcus peroris ATCC
700780]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + R + I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKKGAELALFDEKDQFVRTVVIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I+ + + L ++ D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINDIEKYKGYSLKVAEENLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVELLEGLDDED 172
>gi|307708485|ref|ZP_07644950.1| 16S rRNA processing protein RimM [Streptococcus mitis NCTC 12261]
gi|307615401|gb|EFN94609.1| 16S rRNA processing protein RimM [Streptococcus mitis NCTC 12261]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGTELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ +L V++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVILNVDIPNNRVDVEILEGLDDED 172
>gi|316985245|gb|EFV64196.1| 16S rRNA processing protein RimM [Neisseria meningitidis H44/76]
gi|325200722|gb|ADY96177.1| 16S rRNA processing protein RimM [Neisseria meningitidis H44/76]
Length = 160
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNGELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI++ A LR + R+ F E EDE++ TDL M ++ G+V +
Sbjct: 61 GINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKTITAD---WGLD 159
>gi|94988341|ref|YP_596442.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS9429]
gi|166226478|sp|Q1JMB4|RIMM_STRPC RecName: Full=Ribosome maturation factor rimM
gi|94541849|gb|ABF31898.1| 16S rRNA processing protein [Streptococcus pyogenes MGAS9429]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + +R E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VLIGH 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLSVDVPNKRVDVELMEGLDDED 172
>gi|239917434|ref|YP_002956992.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|281414076|ref|ZP_06245818.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|239838641|gb|ACS30438.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
Length = 200
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 13/181 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNR---ELRILKMYRKN 57
D LV +A IG HG+ GEV + + ++P R V+ EL + +
Sbjct: 7 DDLVRVARIGKPHGIRGEVTVQVFTDDPDARFAPGERLVVRDGAPGLPAELTVTRARWNK 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + F+ + + A LR +L+A E DE++ DL ++E G+ G
Sbjct: 67 QILVVGFAESLDRNVAETLRGAQLFA----VPAAPEESDEWYEEDLVDLEVR-IDGERVG 121
Query: 118 QVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
V + +L + E+ L+PF + V E++ + +++ P L T ++
Sbjct: 122 VVTALTTGAVQDLLHVAVDGVEEEALVPFVEEIVPEIDPKAGVLVLTPPPGLLELATGED 181
Query: 177 P 177
Sbjct: 182 E 182
>gi|325695879|gb|EGD37770.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK160]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ RD L + +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIERFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|94990223|ref|YP_598323.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS10270]
gi|166226479|sp|Q1JHF7|RIMM_STRPD RecName: Full=Ribosome maturation factor rimM
gi|94543731|gb|ABF33779.1| 16S rRNA processing protein rimM [Streptococcus pyogenes MGAS10270]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + +R E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VLIGH 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED 172
>gi|325690618|gb|EGD32621.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK115]
Length = 172
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNILALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-LLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|317403432|gb|EFV83944.1| 16S rRNA-processing protein rimM [Achromobacter xylosoxidans C54]
Length = 206
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 34/196 (17%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVL-----------YSNDNRELRIL 51
L+ + I +G+ G V + ++ N L +++ L ++ +++
Sbjct: 13 DLIELGRISAAYGVKGWVKVQPHSANAEVLLSASQWWLTRPVPELARGAVASAPVAYKVV 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
++ + +A +GI + A LR + A R F E EDE++ DL +
Sbjct: 73 QVRSQGATVVAQLAGIADRDQAEALRGFSVQAPRGSFPAPE--EDEYYWVDLIGCSLYTT 130
Query: 112 -QGK--YWGQVCGVYNFGAGSILEI---------------KNTMEKTFLIPFTKFAVLEV 153
G+ G V V++ GA ++L++ L+PF + + V
Sbjct: 131 ADGEAALIGVVDEVFDNGAHAVLKVLRQQAGANGPEPVLTSKGKPAEMLVPFVRAHIHAV 190
Query: 154 NLQENKILIDPIAAGL 169
+L +I D A L
Sbjct: 191 DLAARRIDSDWPADLL 206
>gi|254419610|ref|ZP_05033334.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
gi|196185787|gb|EDX80763.1| 16S rRNA processing protein RimM [Brevundimonas sp. BAL3]
Length = 184
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 17 HGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSAS 74
G+ GEV + ++ +P+ L Y +L ++ L + + I A
Sbjct: 21 FGVRGEVRVTAFTADPLALTAYGPLLRADGTVALTLSATRPDKSGVVGRAKEIATKEQAD 80
Query: 75 ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIK 134
LR LKLY R F E +EDEF+ DL +E D G+ G V V NFGA +LEI
Sbjct: 81 ALRGLKLYVPRDRFP--EPDEDEFYLADLLGVEVRDTAGEVMGTVKSVQNFGADDMLEIA 138
Query: 135 NT-MEKTFLIPFTKFAVLEVNLQENKIL 161
T+ +PFTK A E++L + +L
Sbjct: 139 PATGGPTWYLPFTKAATPELHLADGWLL 166
>gi|304320474|ref|YP_003854117.1| putative 16S rRNA processing protein [Parvularcula bermudensis
HTCC2503]
gi|303299376|gb|ADM08975.1| putative 16S rRNA processing protein [Parvularcula bermudensis
HTCC2503]
Length = 187
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYR--KNKRFIA 62
D++V++ HG+ GE + S+ D+ Y + + + R K F+A
Sbjct: 7 DRMVVVGQFAGPHGVRGEFKLRSFTERAEDIVAYGPLYTEEGRILTASLLREVKPGLFLA 66
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+ A+ + KL R+ +EDE++ DL + G+ G+V V
Sbjct: 67 RAPEVKTPEEAAAFKGAKLSVPRRALPAP--DEDEYYIEDLIGLTALTPSGEVVGRVRQV 124
Query: 123 YNFGAGSILEIKNTMEK-TFLIPFTKFAVLEVNLQENKILIDPI 165
++GAG I+E+ K L+PF + V V+ +++++DP
Sbjct: 125 ADYGAGPIIELAPVSGKGALLLPFDRTHVPTVDFGASRLIVDPP 168
>gi|78211682|ref|YP_380461.1| 16S rRNA-processing protein [Synechococcus sp. CC9605]
gi|109893063|sp|Q3ANC6|RIMM_SYNSC RecName: Full=Ribosome maturation factor rimM
gi|78196141|gb|ABB33906.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9605]
Length = 177
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRI-LKMYR 55
M + + + + I GL GE+ ++ ++ P R++ I LK R
Sbjct: 1 MAESNDWLSVGKIVAVQGLLGELRVNPASDFPERFTVPGPRWLRSRQGGEPSEIQLKKGR 60
Query: 56 K---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DR 111
+ F+ F G+DN +A L ++L D EL E EF DL ++
Sbjct: 61 QLPGKSLFVVRFEGVDNRSAAETLVGMELLVPADDRP--ELAEGEFHLLDLVGLKARLTA 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G G V + + G +LEI + + LIPF + V EV L+
Sbjct: 119 DGPAIGTVSDLIS-GGNDLLEITTSDGRKLLIPFVEAIVPEVKLKAG 164
>gi|270307929|ref|YP_003329987.1| 16S rRNA processing protein RimM [Dehalococcoides sp. VS]
gi|270153821|gb|ACZ61659.1| 16S rRNA processing protein RimM [Dehalococcoides sp. VS]
Length = 166
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
++ +L+ + G+NG + I + P + + + + + +
Sbjct: 4 EEYILIGKVLGIWGMNGGLKIGVLTDFPERFDIGNKLLIRRTAYTVSQTSWQKAQAVIHL 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
S I +I +A EL + K +L E +++ L +E G+ GQ+ + +
Sbjct: 64 SEITDIDAAEELIGAPVEIPFSALK--KLPEGVYYDFQLIGLEVVGLSGEKIGQIKEILH 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ I I + K LIP K V E+NLQ K++IDPI L+
Sbjct: 122 MPSNDIYVI-SYGAKEALIPAVKDVVKEINLQTYKMIIDPIPGLLD 166
>gi|300933898|ref|ZP_07149154.1| 16S rRNA-processing protein RimM [Corynebacterium resistens DSM
45100]
Length = 199
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 35/201 (17%)
Query: 1 MVKLDK-LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-----LYSNDNRELRILKMY 54
M K + + + HG+ GEV +++ + P + + +R L I K+
Sbjct: 1 MGKTQDTQLQIGRVIKPHGVRGEVVVEATTDQPELRFVVGHELTGIQAGKSRTLTIAKIR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD---- 110
R + TF + + A LR ++ +A E+ +E+ +++ LE + +
Sbjct: 61 PHQGRLLMTFEEVPDRTQAESLRGVRFFAD----PIEDPDEESYYDHQLEGLRVLNCGNV 116
Query: 111 --------------RQGKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFA 149
+ G+V GV + AG+ LE+ T T LIPF
Sbjct: 117 DEQTAYARAYEGAQPEPTDIGEVTGVMHSPAGTTLEVTIDEDTELPTAGHTILIPFRHAI 176
Query: 150 VLEVNLQENKILIDPIAAGLN 170
V V+L + ++I P L
Sbjct: 177 VPIVDLDNDALVITPPDGLLE 197
>gi|219669775|ref|YP_002460210.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense
DCB-2]
gi|219540035|gb|ACL21774.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense
DCB-2]
Length = 170
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
+D+ VL+ + HG+ GE+ + +NP + ++ + + R L++L
Sbjct: 1 MDE-VLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSE 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
T GI+ A +R + A R L+E ++ +LE M+ ++ G +
Sbjct: 60 VYLTLEGINTRDEAEAIRGWAVKADRDQVP--PLKEG-WYYFELEGMQVYEGD-VLLGTL 115
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
V GA + +K +P K V V++ ++ ++ ++ ++
Sbjct: 116 AQVIQTGANDVYLVKGDQG-EICVPALKTVVKHVDVAGKRMDVELPPGLIDGEELR 170
>gi|91205583|ref|YP_537938.1| 16S rRNA-processing protein [Rickettsia bellii RML369-C]
gi|109893045|sp|Q1RIG5|RIMM_RICBR RecName: Full=Ribosome maturation factor rimM
gi|91069127|gb|ABE04849.1| 16S rRNA processing protein RimM [Rickettsia bellii RML369-C]
Length = 166
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR- 59
M L+ L+L+ I + HG+ G + + S+ + + + L + ++ I + + +K
Sbjct: 1 MDSLENLILVGVIKSCHGIKGHIILRSFTDPTVKITERELVNESGEKVNINLIKQNSKGE 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F+ I + A+ L+ KL+ R +LEEDEF+ TDL + D G++
Sbjct: 61 LICQFNDISTRNEAANLKGYKLFCLRSSLP--KLEEDEFYITDLNNLPILDNNHTEIGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+ NFGAG I+E++ + T L+PF K +
Sbjct: 119 KNILNFGAGDIIEVEFLDKTTELLPFNKDFFPII 152
>gi|296876415|ref|ZP_06900467.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
15912]
gi|296432705|gb|EFH18500.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis ATCC
15912]
Length = 172
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++R + I +
Sbjct: 2 NYFNVGKIVNTLGLQGEMRVLSVTDFTEERFKKGAELALFDEEDRFVQTVTIASHRKHKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L+E EF+ ++ ++ ++ + GQ
Sbjct: 62 FDIIKFKDMYHINAIEKFKGFSLKVAEEDLTD--LDEGEFYYHEIIGLDVYEND-QLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++ N++ +D + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPGNRVDVDILEGLDDED 172
>gi|332522194|ref|ZP_08398446.1| 16S rRNA processing protein RimM [Streptococcus porcinus str.
Jelinkova 176]
gi|332313458|gb|EGJ26443.1| 16S rRNA processing protein RimM [Streptococcus porcinus str.
Jelinkova 176]
Length = 172
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNREL----RILKMYRKNK 58
+ + I T GL GE+ + S +A+ + ND + I ++
Sbjct: 2 EFFNVGKIVNTQGLQGEMRVLSVSDFADERFQKGSVLALFNDKNQFVADVEISSHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F ++I++ + + L D L +DEF+ ++ ++ + + + GQ
Sbjct: 62 FDIIKFKDHNHINAIEKYKGFTLKVSENYLSD--LADDEFYYHEIIGLDVY-EENQLIGQ 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K +K L+P+ +L V+L+ +++ + I GL++
Sbjct: 119 VKEILQPGANDVWVVKRKGKKDLLLPYIPSVILNVDLEHHRVDVV-IMEGLDDE 171
>gi|327470887|gb|EGF16343.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK330]
Length = 172
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ TI T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGTIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-ILLGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|295425196|ref|ZP_06817899.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
gi|295064972|gb|EFG55877.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
Length = 185
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFI 61
+ +A I TTHGL+GEV + + P + L + REL + + ++
Sbjct: 16 QFYNVAKILTTHGLDGEVKVALITDFPEQRFSSGSKLALKDDHERELTVKSGRPFKQFWL 75
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVC 120
F+ I +I A LR L ++ +EL E ++ D+ + D + G++ G++
Sbjct: 76 VKFNEITDIDQAERLRGKILVVSEEN--QQELPEGVYYYRDILNCDVIDNQNGEFLGKIV 133
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + ++ + IP+ K V +V++ + K+ ++ + +
Sbjct: 134 DIQSPGANDVWLVQEDSGNEYWIPYIKDVVKKVDVDQKKVYVELMEGLHDED 185
>gi|88855265|ref|ZP_01129930.1| 16S rRNA processing protein [marine actinobacterium PHSC20C1]
gi|88815793|gb|EAR25650.1| 16S rRNA processing protein [marine actinobacterium PHSC20C1]
Length = 188
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 19/192 (9%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-----------DNRELRILKMYRKNK 58
M + HGL G + ++ Y + P R+V + + L ++++ N
Sbjct: 1 MGRLTKAHGLKGAIKVEMYTDAPER--RFVPGAVFSLQVPTSSPWHGKTLELIELKWYNA 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +A F G+ + A L L+ +EE EED +F+ L ++ R G+ G
Sbjct: 59 QPVAFFKGVLDRSDAEGLIKAILWIDHD--PNEEPEEDAWFDHQLVGLKVI-RDGQQVGT 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN--TTMKN 176
+ V +F +L + L+PF K V V+L+ ++++ P
Sbjct: 116 LAQVDHFPVQDLLTVTTENG-DVLVPFVKSIVASVDLEAGEMVVTPPPGLFEEIPDEPSE 174
Query: 177 PQYDCPLDSAGK 188
P D A
Sbjct: 175 PAADEVETDAPD 186
>gi|93007145|ref|YP_581582.1| 16S rRNA processing protein RimM [Psychrobacter cryohalolentis K5]
gi|109893037|sp|Q1Q8A5|RIMM_PSYCK RecName: Full=Ribosome maturation factor rimM
gi|92394823|gb|ABE76098.1| 16S rRNA processing protein RimM [Psychrobacter cryohalolentis K5]
Length = 177
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDN-RELRILKMYRKNKRFIA 62
L+ + + +G+ G +++ S ++ D+ + + + + L + + +A
Sbjct: 10 LMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVA 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I + + A + + L+ ++ E EDE++ +DL + + Q +Y G + +
Sbjct: 70 QFEQIPDRNVAETMNGVTLWVEQDILP--EPAEDEYYWSDLVSLRVMNEQDEYLGDITEM 127
Query: 123 YNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILI 162
+ GA +I+ + T ++ LIP+ K V++V+L E +L+
Sbjct: 128 FETGAHAIMRVAATTDSLDKEERLIPWHKQTVVKVDLTEKTVLV 171
>gi|324991035|gb|EGC22969.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK353]
Length = 172
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNILALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ + RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIEKFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLIGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|332366785|gb|EGJ44526.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1059]
Length = 172
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ ++ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNILALFDKKDQFVMDVEIASHRKVKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F G+ +I+ RD L + +D D LE+ EF+ ++ +E ++ G+
Sbjct: 62 FDIIKFKGMYHINDIERFRDFTLKVREEDLTD--LEDGEFYYHEIIGLEVYEND-VLLGR 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++++ ++ ++ I GL++
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLGIDIEQGRVDVE-IPEGLDDE 171
>gi|323359708|ref|YP_004226104.1| RimM protein [Microbacterium testaceum StLB037]
gi|323276079|dbj|BAJ76224.1| RimM protein [Microbacterium testaceum StLB037]
Length = 213
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-----------DNRELRILKMYRK 56
+ + + HGL G ++ Y ++P R+V + R L + +
Sbjct: 16 LRVGRLVKAHGLKGAFKLELYTDDPE--GRFVPGNTFTLQVPESSPWHGRPLTVREFRWM 73
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N +A F G+D+ ++A EL L+ QD D E+D +++ L ++ R G+
Sbjct: 74 NSHPVAFFEGVDDRNAAEELVKAILWID-QDTADAPAEDDAWYDHQLVGLDVV-RDGEVV 131
Query: 117 GQVCGVYNFGAGSILEIKNTME-KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V +F A +L ++ + E + L+PF V EV++ ++++ P A +
Sbjct: 132 GRVVRVDHFPAQDLLIVRPSGEDREVLVPFVSAIVPEVDIAGGRVVVTPPAGLFEDLPSD 191
Query: 176 NPQYDC 181
+
Sbjct: 192 DGDEPE 197
>gi|307706338|ref|ZP_07643150.1| 16S rRNA processing protein RimM [Streptococcus mitis SK321]
gi|307618256|gb|EFN97411.1| 16S rRNA processing protein RimM [Streptococcus mitis SK321]
Length = 172
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR--ELRILKMYRKNKR 59
+ I T GL GE+ + S + + + L+ ++ + I+ +RK K
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVIIASHRKQKN 61
Query: 60 F-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVEILEGLDDED 172
>gi|239617837|ref|YP_002941159.1| 16S rRNA processing protein RimM [Kosmotoga olearia TBF 19.5.1]
gi|259585646|sp|C5CEB5|RIMM_KOSOT RecName: Full=Ribosome maturation factor rimM
gi|239506668|gb|ACR80155.1| 16S rRNA processing protein RimM [Kosmotoga olearia TBF 19.5.1]
Length = 200
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 13/186 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNREL---RILKMYRKN 57
+D ++ + + HGL GEV + S N L + +LY + I + R
Sbjct: 9 IDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAG 68
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K +I F G ++ +A +R +YA L+E E++ L + E +D +G+Y G
Sbjct: 69 KGYIVHFKGFKSVEAAERIRGFYVYAPLNVLP--PLKEGEYYFYQLLDCEVYDPEGEYIG 126
Query: 118 QVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILIDPIAAG-LNNT 172
+V + GA ++ + + + LIP K ++E ++ KI+ + L
Sbjct: 127 KVTDIIETGANDVIVVTKELPDFTVEEELIPVIKDYIVEFRFKDKKIVAKRLEYLTLEGK 186
Query: 173 TMKNPQ 178
+ +
Sbjct: 187 EDNDDE 192
>gi|260435475|ref|ZP_05789445.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
gi|260413349|gb|EEX06645.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
Length = 177
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRI-LKMYR 55
M + ++ + + I GL GE+ ++ ++ P R++ I LK R
Sbjct: 1 MAETNEWLSVGKIVGVQGLQGELRVNPASDFPERFTAPGPRWLRSRKGGEPTEIQLKKGR 60
Query: 56 K---NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DR 111
+ F+ GID+ +A L +L D ELEE EF DL +E
Sbjct: 61 QLPGKSLFVVRLEGIDSRSAAETLVGHELLVSADDRP--ELEEGEFHLLDLLGLEARLTA 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G G V + + G +LEI + + LIPF + V +V L++
Sbjct: 119 DGPAVGTVSDLIS-GGNDLLEITTSEGRKLLIPFVEAIVPKVQLEDG 164
>gi|269219639|ref|ZP_06163493.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 848
str. F0332]
gi|269210881|gb|EEZ77221.1| 16S rRNA processing protein RimM [Actinomyces sp. oral taxon 848
str. F0332]
Length = 192
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 6/173 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +A IG HGL GE+ +D + P + L + + A
Sbjct: 3 LTVAVIGAPHGLKGELRLDVRTDQPERRLGIGAMLETDPQEAGPLTVARTREYKGAIYAM 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FS + A LR +KL + + D+ +EED F+ +L +E D +G G++ G+
Sbjct: 63 FSECTDRTMAERLRGVKLTVETDE--DDYVEEDAFYEHELVGLEVLDPEGYELGRIIGLE 120
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
F A +L ++ +PF + V EV+L +N +++ + +
Sbjct: 121 TFPAQDMLVVREPDGDVARVPFVREIVTEVDLDDNCVVVRAPQGLFSADDEAD 173
>gi|15902730|ref|NP_358280.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae R6]
gi|116516249|ref|YP_816172.1| 16S rRNA-processing protein [Streptococcus pneumoniae D39]
gi|148985872|ref|ZP_01818966.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP3-BS71]
gi|148989860|ref|ZP_01821154.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP6-BS73]
gi|148992443|ref|ZP_01822138.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP9-BS68]
gi|148997144|ref|ZP_01824798.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP11-BS70]
gi|149003399|ref|ZP_01828288.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS69]
gi|149007660|ref|ZP_01831277.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP18-BS74]
gi|149010594|ref|ZP_01831965.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP19-BS75]
gi|149021644|ref|ZP_01835675.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP23-BS72]
gi|168484436|ref|ZP_02709388.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1873-00]
gi|168488447|ref|ZP_02712646.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SP195]
gi|168492929|ref|ZP_02717072.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC3059-06]
gi|168575439|ref|ZP_02721375.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae MLV-016]
gi|169834325|ref|YP_001694237.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
Hungary19A-6]
gi|182683696|ref|YP_001835443.1| 16S rRNA-processing protein [Streptococcus pneumoniae CGSP14]
gi|194397767|ref|YP_002037423.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae G54]
gi|221231571|ref|YP_002510723.1| 16S rRNA processing protein [Streptococcus pneumoniae ATCC 700669]
gi|225856451|ref|YP_002737962.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae P1031]
gi|225858585|ref|YP_002740095.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae 70585]
gi|225861320|ref|YP_002742829.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230989|ref|ZP_06964670.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254138|ref|ZP_06977724.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503218|ref|YP_003725158.1| 16S rRNA-processing protein [Streptococcus pneumoniae TCH8431/19A]
gi|303255809|ref|ZP_07341850.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS455]
gi|303260244|ref|ZP_07346215.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP-BS293]
gi|303261450|ref|ZP_07347398.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS292]
gi|303264118|ref|ZP_07350039.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS397]
gi|303266271|ref|ZP_07352162.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS457]
gi|303268710|ref|ZP_07354500.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS458]
gi|307127673|ref|YP_003879704.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 670-6B]
gi|32171636|sp|Q8DQG3|RIMM_STRR6 RecName: Full=Ribosome maturation factor rimM
gi|122278942|sp|Q04LC6|RIMM_STRP2 RecName: Full=Ribosome maturation factor rimM
gi|238688282|sp|B1IAV2|RIMM_STRPI RecName: Full=Ribosome maturation factor rimM
gi|238690810|sp|B5E3G0|RIMM_STRP4 RecName: Full=Ribosome maturation factor rimM
gi|238691145|sp|B2INF5|RIMM_STRPS RecName: Full=Ribosome maturation factor rimM
gi|254797763|sp|C1C6B9|RIMM_STRP7 RecName: Full=Ribosome maturation factor rimM
gi|254797764|sp|B8ZND1|RIMM_STRPJ RecName: Full=Ribosome maturation factor rimM
gi|254797767|sp|C1CJM4|RIMM_STRZP RecName: Full=Ribosome maturation factor rimM
gi|254797768|sp|C1CSA7|RIMM_STRZT RecName: Full=Ribosome maturation factor rimM
gi|15458275|gb|AAK99490.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae R6]
gi|116076825|gb|ABJ54545.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae D39]
gi|147756844|gb|EDK63884.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP11-BS70]
gi|147758582|gb|EDK65580.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS69]
gi|147760815|gb|EDK67786.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP18-BS74]
gi|147765075|gb|EDK72004.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP19-BS75]
gi|147922018|gb|EDK73142.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP3-BS71]
gi|147924802|gb|EDK75886.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP6-BS73]
gi|147928760|gb|EDK79773.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP9-BS68]
gi|147930105|gb|EDK81091.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP23-BS72]
gi|168996827|gb|ACA37439.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Hungary19A-6]
gi|172042310|gb|EDT50356.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1873-00]
gi|182629030|gb|ACB89978.1| 16S rRNA-processing protein [Streptococcus pneumoniae CGSP14]
gi|183573191|gb|EDT93719.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SP195]
gi|183576939|gb|EDT97467.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC3059-06]
gi|183578450|gb|EDT98978.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae MLV-016]
gi|194357434|gb|ACF55882.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae G54]
gi|220674031|emb|CAR68544.1| 16S rRNA processing protein [Streptococcus pneumoniae ATCC 700669]
gi|225721207|gb|ACO17061.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 70585]
gi|225724530|gb|ACO20382.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae P1031]
gi|225726909|gb|ACO22760.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238813|gb|ADI69944.1| 16S rRNA-processing protein [Streptococcus pneumoniae TCH8431/19A]
gi|301799791|emb|CBW32360.1| 16S rRNA processing protein [Streptococcus pneumoniae OXC141]
gi|301801622|emb|CBW34320.1| 16S rRNA processing protein [Streptococcus pneumoniae INV200]
gi|302597193|gb|EFL64298.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS455]
gi|302637584|gb|EFL68071.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS292]
gi|302638568|gb|EFL69032.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP-BS293]
gi|302641770|gb|EFL72127.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS458]
gi|302644201|gb|EFL74457.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS457]
gi|302646523|gb|EFL76749.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS397]
gi|306484735|gb|ADM91604.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 670-6B]
gi|327390134|gb|EGE88477.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04375]
gi|332073098|gb|EGI83577.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17570]
gi|332076056|gb|EGI86522.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41301]
gi|332077191|gb|EGI87653.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17545]
gi|332202640|gb|EGJ16709.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41317]
gi|332203931|gb|EGJ17998.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47368]
Length = 172
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED 172
>gi|56808444|ref|ZP_00366190.1| COG0806: RimM protein, required for 16S rRNA processing
[Streptococcus pyogenes M49 591]
gi|209559208|ref|YP_002285680.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes NZ131]
gi|238058955|sp|B5XKX3|RIMM_STRPZ RecName: Full=Ribosome maturation factor rimM
gi|209540409|gb|ACI60985.1| 16S rRNA processing protein RimM [Streptococcus pyogenes NZ131]
Length = 172
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDQFVQEVTIVSHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKAN--QGDLQEGEFYYHQIIGMPVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ + ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKCVDVELMEGLDDED 172
>gi|206901833|ref|YP_002251244.1| 16S rRNA processing protein RimM [Dictyoglomus thermophilum H-6-12]
gi|206740936|gb|ACI19994.1| 16S rRNA processing protein RimM [Dictyoglomus thermophilum H-6-12]
Length = 166
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSND---NRELRILKMYRKNKR 59
+V +A +G G+ G + I + + L + Y+ + + REL + + NK
Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIGTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
++ FS I A ++R L + +D +L E +++ + + ++ G+Y G+V
Sbjct: 61 YVIYFSEILTRDEAEKIRGNWLLIEEEDLP--KLPEGQYYTYQIMGLSVYEESGEYLGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ G+ + ++ E IP K ++E+NL+E KI+I +
Sbjct: 119 KEILETGSNDVYIVEGEEE-DIYIPAIKDVIVEINLEEGKIVIRKMKE 165
>gi|33597422|ref|NP_885065.1| 16S rRNA-processing protein [Bordetella parapertussis 12822]
gi|33602163|ref|NP_889723.1| 16S rRNA-processing protein [Bordetella bronchiseptica RB50]
gi|46397682|sp|Q7W6N7|RIMM_BORPA RecName: Full=Ribosome maturation factor rimM
gi|46397683|sp|Q7WHM0|RIMM_BORBR RecName: Full=Ribosome maturation factor rimM
gi|33573849|emb|CAE38158.1| 16S rRNA processing protein [Bordetella parapertussis]
gi|33576601|emb|CAE33679.1| 16S rRNA processing protein [Bordetella bronchiseptica RB50]
Length = 207
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 36/189 (19%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDN-----------RELRIL 51
LV + I + +G+ G V + ++ L + L R ++L
Sbjct: 13 DLVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARGVVASVPRAYQVL 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-D 110
+ +A +GID+ A LR + A R F +DE++ DL + D
Sbjct: 73 QARVHGGAVVAQLAGIDDRDQAEALRGCLVQAARSAFPAP--ADDEYYWVDLIGCALYSD 130
Query: 111 RQGK--YWGQVCGVYNFGAGSILEI---------------KNTMEK--TFLIPFTKFAVL 151
G+ G V V++ GA ++L++ + + L+PF + +
Sbjct: 131 ADGESRLLGVVDEVFDNGAHAVLKVLRQQLQPGQPGPVPLVDPKGRPLEELVPFVRAHIR 190
Query: 152 EVNLQENKI 160
V+L +I
Sbjct: 191 HVDLAARRI 199
>gi|319760316|ref|YP_004124254.1| ribosome maturation factor rimM [Candidatus Blochmannia vafer str.
BVAF]
gi|318039030|gb|ADV33580.1| ribosome maturation factor rimM [Candidatus Blochmannia vafer str.
BVAF]
Length = 189
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKRFI 61
V++ IG +G+ G + I S+ + D+ +Y +L + + + + NK +I
Sbjct: 12 DPVIIGKIGGAYGVQGWLKIISFTDKIEDIFKYCPWFILLRSQWKLMILENWRVINKHYI 71
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
A S I + A L L + + +E E++ D+ E + G Y G V
Sbjct: 72 AKISDISSREIAMSLAQCNLIIDSKSLPILK-KEGEYYWKDIIGCEVINIDGDYLGYVIN 130
Query: 122 VYNFGAGSILEIKNTMEKTF-----LIPFT-KFAVLEVNLQENKILID 163
+ A +L IK LIPF K + V++ I++D
Sbjct: 131 IIETQAHDVLVIKLNSHDDVKIKSCLIPFVQKKIIKYVSIINRTIIVD 178
>gi|15900672|ref|NP_345276.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae TIGR4]
gi|111658333|ref|ZP_01409021.1| hypothetical protein SpneT_02000473 [Streptococcus pneumoniae
TIGR4]
gi|21362870|sp|Q97RM5|RIMM_STRPN RecName: Full=Ribosome maturation factor rimM
gi|14972254|gb|AAK74916.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae TIGR4]
Length = 172
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + VL+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELVLFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPSKRVDVEILEGLDDED 172
>gi|89895341|ref|YP_518828.1| hypothetical protein DSY2595 [Desulfitobacterium hafniense Y51]
gi|122482320|sp|Q24UA8|RIMM_DESHY RecName: Full=Ribosome maturation factor rimM
gi|89334789|dbj|BAE84384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 170
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYRKNKR 59
+D+ VL+ + HG+ GE+ + +NP + ++ + + R L++L
Sbjct: 1 MDE-VLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSE 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
T GI+ A +R + A R L+E ++ +LE M+ ++ G +
Sbjct: 60 VYLTLEGINTRDKAEAIRGWAVKADRDQVP--PLKEG-WYYFELEGMQVYEGD-VLLGTL 115
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
V GA + +K +P K V V++ ++ ++ ++ ++
Sbjct: 116 AQVIQTGANDVYLVKGDKG-EICVPALKTVVKHVDVAGKRMDVELPPGLIDGEELR 170
>gi|19745922|ref|NP_607058.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS8232]
gi|24418642|sp|Q8P1F4|RIMM_STRP8 RecName: Full=Ribosome maturation factor rimM
gi|19748078|gb|AAL97557.1| putative 16S rRNA processing protein RIMM [Streptococcus pyogenes
MGAS8232]
Length = 172
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDQFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKAN--QGDLQEGEFYYHQIIGMAVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLSVDVPNKRVDVELMEGLDDED 172
>gi|168486209|ref|ZP_02710717.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1087-00]
gi|168490867|ref|ZP_02715010.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC0288-04]
gi|183570742|gb|EDT91270.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1087-00]
gi|183574762|gb|EDT95290.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC0288-04]
Length = 172
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPSKRVDVEILEGLDDED 172
>gi|256831067|ref|YP_003159795.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
gi|256580243|gb|ACU91379.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
Length = 182
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-----LYSNDNRELRILKMYRKNKRF 60
KLV + + HGL GE+ I+ YA++P L + + R
Sbjct: 10 KLVELGRVQKPHGLRGELCIEPYADSPFIFEGLTRVYLRLPGKKPKPCVLEGWRAHQGRA 69
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ T A R + A+ +D L+EDEF DL + G G +
Sbjct: 70 LITVDRSQGRDQAEAWRGADVLARERDLP--PLDEDEFRPEDLLGLPVMHVNGSRIGVLE 127
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + I + ++P +L+++L+ IL+DP L
Sbjct: 128 DIRDVAGQELWFILDDAGNEIMLPAVDEFILDIDLEAGVILVDPPDGLLE 177
>gi|94501753|ref|ZP_01308267.1| 16S rRNA-processing protein [Oceanobacter sp. RED65]
gi|94426153|gb|EAT11147.1| 16S rRNA-processing protein [Oceanobacter sp. RED65]
Length = 176
Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)
Query: 1 MVK-LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMYR 55
M K D + I +G+ G V + SY ++ Y ++ +++ +
Sbjct: 1 MSKIPDNFTKIGKITGVYGIKGWVKVYSYTEPKENVFSYDGWHLVKKGQLVPVKVREWRT 60
Query: 56 KNKRFIATFSGIDNIHSA-SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ K +A + + A + + + E E EF+ LE +
Sbjct: 61 QGKGLVAALDDCQDRNQAQEQYVQCDVVMDKGQLP--EPGEGEFYYHQLEGLLVVTTDDV 118
Query: 115 YWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G+V ++N G +L +K + +P+T +V+L++ I +D
Sbjct: 119 VLGRVDYLFNTGNNDVLVVKPCKESLDGRERWLPYTNDCTKDVDLKQGFIRVD 171
>gi|15674881|ref|NP_269055.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes M1 GAS]
gi|71910468|ref|YP_282018.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS5005]
gi|14423885|sp|P58183|RIMM_STRP1 RecName: Full=Ribosome maturation factor rimM
gi|13622019|gb|AAK33776.1| putative 16S rRNA processing protein [Streptococcus pyogenes M1
GAS]
gi|71853250|gb|AAZ51273.1| 16S rRNA processing protein [Streptococcus pyogenes MGAS5005]
Length = 172
Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + +R E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VLIGH 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWIVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED 172
>gi|160892785|ref|ZP_02073575.1| hypothetical protein CLOL250_00316 [Clostridium sp. L2-50]
gi|156865826|gb|EDO59257.1| hypothetical protein CLOL250_00316 [Clostridium sp. L2-50]
Length = 163
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
M I HG+ GEV + ++ +++ + E + F+
Sbjct: 1 MGVITAPHGIKGEVKVYPTTDDLNRFKSLKKCFLVSGSKEIETECTSCKFLKNMVVLKFA 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G D+I+ LR + R+D LE+ EFF D+ + +D+ G + V
Sbjct: 61 GYDSINDVEALRQYDILVNRED--AVALEDGEFFICDVIGSKVYDQNDTEIGVIDDVLET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A I IK + +P K V +++ + +
Sbjct: 119 PANHIFVIKKKGQDDIYVPVVKEWVTDIDTVNKTVKV 155
>gi|260584022|ref|ZP_05851770.1| 16S rRNA processing protein RimM [Granulicatella elegans ATCC
700633]
gi|260158648|gb|EEW93716.1| 16S rRNA processing protein RimM [Granulicatella elegans ATCC
700633]
Length = 171
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDN--RELRILKMYRKN 57
+ + + I T GL GEV + S + D L+ + + L I R
Sbjct: 1 MSQYFKVGKIVNTQGLRGEVRVISTTDFAEDRYQKGVELALFRDGEFEKLLTIKSHRRHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ TF I RD L ++ E +E + ++ +E +G++ G
Sbjct: 61 NFDLLTFEDHSRIEDVEGYRDCLLKVSSDALEELEEDE--LYYHEVVGLEIITDEGEHLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+V + + G+ + +K +K LIPF + V +++ + + I + +
Sbjct: 119 KVSEILSPGSNDVWVVKQKGKKDLLIPFIEPVVYKIDKENKQAFIHVLEGLFD 171
>gi|322411560|gb|EFY02468.1| 16S rRNA-processing protein RimM [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 172
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDEKDQFVQEVTIVSHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L + + +L+E EF+ + M +++ G
Sbjct: 62 FDIIKFKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VLIGH 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVLNKRVDVELMEGLDDED 172
>gi|307105876|gb|EFN54123.1| hypothetical protein CHLNCDRAFT_25138 [Chlorella variabilis]
Length = 225
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN----KRF 60
D+ V + IG HG+ GE+ + + + P D L + R L + + +
Sbjct: 9 DEWVEVGRIGPPHGVRGEMKVQALTDFPEDR----LATAGPRCACWLAQRSPSPWALQVW 64
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ + +++ A+ LR L + E +EDEF+ DL + F + G+ G V
Sbjct: 65 LVKLAEVESPEEAALLRGHTLLIPASARQSLE-DEDEFYVQDLVGLRVFLQATGEEVGLV 123
Query: 120 CGVYN-FGAGSILEIKNTM----EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
V++ G E + + L+PF K V V+L ++ + P L
Sbjct: 124 SDVFDGTGTHDAAEAEAEGGAAVPRHVLLPFAKAMVPVVDLAARRMEVTPPEGLLELVAP 183
Query: 175 KNPQY 179
N +
Sbjct: 184 SNQRR 188
>gi|225854285|ref|YP_002735797.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae JJA]
gi|254797766|sp|C1CDC6|RIMM_STRZJ RecName: Full=Ribosome maturation factor rimM
gi|225722534|gb|ACO18387.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae JJA]
Length = 172
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNIGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED 172
>gi|153872128|ref|ZP_02001110.1| 16S rRNA-processing protein rimM [Beggiatoa sp. PS]
gi|152071409|gb|EDN68893.1| 16S rRNA-processing protein rimM [Beggiatoa sp. PS]
Length = 168
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 9/167 (5%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-DNRELRILKMYR---KN 57
+ +K +++ I +G++G V I SY + Y + + +IL MY
Sbjct: 1 MSAEKRIIIGRINGLYGVSGWVKIFSYTTPITKILEYSPWQLCQKGQWQILSMYEGKAHG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K IA + A L + R ++E++ DL + + G
Sbjct: 61 KGIIARLESSHDRDEAVRLLGADIAIFRSQLPPVS--KNEYYWNDLLGLTVINHDNITLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
V + GA IL IK EK LIPF + +LE++L + I +D
Sbjct: 119 IVDHLLETGANDILVIK--GEKECLIPFVLEQVILEIDLTQRIIRVD 163
>gi|161831215|ref|YP_001596374.1| 16S rRNA-processing protein RimM [Coxiella burnetii RSA 331]
gi|189040132|sp|A9NBR0|RIMM_COXBR RecName: Full=Ribosome maturation factor rimM
gi|161763082|gb|ABX78724.1| 16S rRNA processing protein RimM [Coxiella burnetii RSA 331]
Length = 168
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKN 57
+K + V++ + +GL G + + S+ +N ++ + + ++N+ + L++
Sbjct: 1 MKPNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHE 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ID+ +A + + +R+ L+E +++ TDL + + G G
Sbjct: 61 PFLVVKLENIDDPETAKHYTNDLIAIERRALGA--LKEGDYYWTDLIGLAVVNTHGIELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + G+ +L +++ E+ LIP+T + + ++L++ I+++
Sbjct: 119 TVDSLIETGSNDVLVVRSK-ERERLIPYTSYTIQSIDLEKKIIVVE 163
>gi|306827554|ref|ZP_07460836.1| 16S rRNA processing protein RimM [Streptococcus pyogenes ATCC
10782]
gi|304430261|gb|EFM33288.1| 16S rRNA processing protein RimM [Streptococcus pyogenes ATCC
10782]
Length = 172
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + +R E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKLKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLSVDVPNKRVDVELMEGLDDED 172
>gi|254671923|emb|CBA04257.1| 16S rRNA processing protein [Neisseria meningitidis alpha275]
gi|325202614|gb|ADY98068.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240149]
Length = 160
Score = 143 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNGELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI++ A LR + R+ F E EDE++ TDL M ++ G+V +
Sbjct: 61 GINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 159
>gi|327329803|gb|EGE71559.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL096PA3]
Length = 179
Score = 143 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P V R+L +++ FI F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCFIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D + + EF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEPNDDPDDPD-EFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
I + + L+PF V V++ +I++ I L++ +
Sbjct: 136 I-DVSGEEHLVPFVHQLVPTVDVASGRIVVSGIPGLLDSNAEEA 178
>gi|21910109|ref|NP_664377.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS315]
gi|28896193|ref|NP_802543.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes SSI-1]
gi|94994142|ref|YP_602240.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS10750]
gi|25009059|sp|Q8K7X4|RIMM_STRP3 RecName: Full=Ribosome maturation factor rimM
gi|166226480|sp|Q1J778|RIMM_STRPF RecName: Full=Ribosome maturation factor rimM
gi|21904301|gb|AAM79180.1| putative 16S rRNA processing protein [Streptococcus pyogenes
MGAS315]
gi|28811444|dbj|BAC64376.1| putative 16S rRNA processing protein [Streptococcus pyogenes SSI-1]
gi|94547650|gb|ABF37696.1| 16S rRNA processing protein rimM [Streptococcus pyogenes MGAS10750]
Length = 172
Score = 143 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + +R E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKLKDMYHINAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED 172
>gi|298530725|ref|ZP_07018127.1| 16S rRNA processing protein RimM [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510099|gb|EFI34003.1| 16S rRNA processing protein RimM [Desulfonatronospira thiodismutans
ASO3-1]
Length = 178
Score = 143 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 7/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRK 56
+ L+ + HGL GE+ I YA++P+ L + + R
Sbjct: 1 MSAKDLLTCGKVVKPHGLKGEICIIWYADSPLLLKKAEKIYLRMPGKRPRAFTPESSREH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + I A + R ++ A +D + +++E + +L F G+Y
Sbjct: 61 GSRLLLQLEQITGRDQAEKWRGAEILADSKDLPRD--DDNEIYLHELLGCSVFLDSGEYL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + G G + EI + + L P ++ ++ + K +I P L
Sbjct: 119 GVLQGFVPRKNGEVWEIVDEKGREILFPAEDEFIVHLDPEAKKAVISPPGGLLE 172
>gi|108760176|ref|YP_631740.1| 16S rRNA processing protein RimM [Myxococcus xanthus DK 1622]
gi|122388855|sp|Q1D6I3|RIMM_MYXXD RecName: Full=Ribosome maturation factor rimM
gi|108464056|gb|ABF89241.1| 16S rRNA processing protein RimM [Myxococcus xanthus DK 1622]
Length = 188
Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 7/171 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDN--RELRILKMYR 55
M + + + HGL GEV I + + ++R + + RE+R+ +
Sbjct: 1 MTATSPYLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEALRP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K I G+++ + A L K++ R+D + E EFF DL ++ D G
Sbjct: 61 TPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPP--AEGEFFQGDLVGLDAVDANGNA 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G+V ++ G L I+ + + ++PF V V+L+ +I+I P
Sbjct: 119 LGRVEEIWTTGEVPNLVIRASGREELVVPFADEFVPTVDLEARRIVIHPPE 169
>gi|229824951|ref|ZP_04451020.1| hypothetical protein GCWU000182_00300 [Abiotrophia defectiva ATCC
49176]
gi|229790954|gb|EEP27068.1| hypothetical protein GCWU000182_00300 [Abiotrophia defectiva ATCC
49176]
Length = 181
Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 18/183 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL------------NRYVLYSNDNRELRIL 51
++ + + +THGL G + + + + + N E+ +
Sbjct: 1 MENYFRVGVLTSTHGLTGGIKVFPTTDCLDRFDSLKRAFIDLSSGKGTIKGNGMLEVEVE 60
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ I TF GIDN+ ++ + + L R+D L E E + +D+ +
Sbjct: 61 NVKYFKNTPIVTFKGIDNVDLVAKYKGMDLLVARED--ALPLAEGEHYVSDVIGCKVITD 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILIDPIAA 167
GK +G V V GA +L +K K F +P VLE+N +E + + +
Sbjct: 119 TGKEYGVVSEVIETGANKVLVVKPNEAHKELKEFCLPHIPECVLEINTEEGFVKVHIMKG 178
Query: 168 GLN 170
L+
Sbjct: 179 LLD 181
>gi|212218946|ref|YP_002305733.1| 16S rRNA-processing protein RimM [Coxiella burnetii CbuK_Q154]
gi|238058948|sp|B6J8I9|RIMM_COXB1 RecName: Full=Ribosome maturation factor rimM
gi|212013208|gb|ACJ20588.1| 16S rRNA processing protein [Coxiella burnetii CbuK_Q154]
Length = 168
Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKN 57
+K + V++ + +GL G + + S+ +N ++ + + ++N+ + L++
Sbjct: 1 MKSNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHE 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ID+ +A + + +R L+E +++ TDL + + G G
Sbjct: 61 PFLVVKLENIDDPETAKHYTNDLIAIERGALGA--LKEGDYYWTDLIGLAVVNTHGIELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + G+ +L +++ E+ LIP+T + + ++L++ I+++
Sbjct: 119 TVDSLIETGSNDVLVVRSK-ERERLIPYTSYTIQSIDLEKKIIVVE 163
>gi|149184774|ref|ZP_01863092.1| 16S rRNA processing protein [Erythrobacter sp. SD-21]
gi|148832094|gb|EDL50527.1| 16S rRNA processing protein [Erythrobacter sp. SD-21]
Length = 161
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D V +A + HG+ GEV + + L + ++ L L+ IA F
Sbjct: 3 DTPVTLAAVTGAHGVAGEVRLKLFGEGLEGLKPHKSFNEGALTLSKLRS-DNKGGAIARF 61
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + + +A +LR L R+ LEE EF+ +DL + G+ G+VC V N
Sbjct: 62 AEVADRTAAEKLRGTVLTVPREALPA--LEEGEFYYSDLLGLPVVTDTGEAVGRVCAVEN 119
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
FGA I+EI+ K F++P T+ AV + +
Sbjct: 120 FGATEIVEIEKPDGKKFMVPLTRQAVPGWDSE 151
>gi|29653789|ref|NP_819481.1| 16S rRNA-processing protein RimM [Coxiella burnetii RSA 493]
gi|154706710|ref|YP_001424968.1| 16S rRNA-processing protein RimM [Coxiella burnetii Dugway
5J108-111]
gi|212213070|ref|YP_002304006.1| 16S rRNA-processing protein RimM [Coxiella burnetii CbuG_Q212]
gi|48474818|sp|Q83E84|RIMM_COXBU RecName: Full=Ribosome maturation factor rimM
gi|189040131|sp|A9KEE8|RIMM_COXBN RecName: Full=Ribosome maturation factor rimM
gi|238058949|sp|B6J1N3|RIMM_COXB2 RecName: Full=Ribosome maturation factor rimM
gi|29541052|gb|AAO89995.1| 16S rRNA processing protein [Coxiella burnetii RSA 493]
gi|154355996|gb|ABS77458.1| 16S rRNA processing protein [Coxiella burnetii Dugway 5J108-111]
gi|212011480|gb|ACJ18861.1| 16S rRNA processing protein [Coxiella burnetii CbuG_Q212]
Length = 168
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKN 57
+K + V++ + +GL G + + S+ +N ++ + + ++N+ + L++
Sbjct: 1 MKPNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHE 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ID+ +A + + +R L+E +++ TDL + + G G
Sbjct: 61 PFLVVKLENIDDPETAKHYTNDLIAIERGALGA--LKEGDYYWTDLIGLAVVNTHGIELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + G+ +L +++ E+ LIP+T + + ++L++ I+++
Sbjct: 119 TVDSLIETGSNDVLVVRSK-ERERLIPYTSYTIQSIDLEKKIIVVE 163
>gi|297617095|ref|YP_003702254.1| 16S rRNA processing protein RimM [Syntrophothermus lipocalidus DSM
12680]
gi|297144932|gb|ADI01689.1| 16S rRNA processing protein RimM [Syntrophothermus lipocalidus DSM
12680]
Length = 178
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE-LRILKMYRK 56
M K L+ + + T G G++ + + P ++ DN E L I +
Sbjct: 1 MTK--DLITVGEVCGTFGTEGKLKVRPLTDFPERFNGMKEVLVQQGDNVEVLTIEAVSPL 58
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F GID A L L + L ED ++ L+ +E +D +
Sbjct: 59 RDFMVFKFRGIDTREQARCLVRAYLKVPPSEV--FPLPEDCYYIFQLKGLEVYDDTRGFL 116
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
G + V GA + ++ LIP K V ++ L+E ++ + I ++
Sbjct: 117 GTITDVIQTGANDVYVVQGGPFGEVLIPAIKQVVRDIRLEEGRVEVRLIPGLIDE 171
>gi|116074427|ref|ZP_01471689.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
gi|116069732|gb|EAU75484.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
Length = 187
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYV-LYSNDNRELRILKMYRK 56
+ + + + GL GE+ I+ + P R++ + RE+ + +
Sbjct: 13 TSSEDWLPVGKVVGVQGLKGELRINPASEFPERFTDPGSRWLKARGSAPREMELKSGRQL 72
Query: 57 NKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQG 113
R F+ F+GIDN +A L L D ELEE EF DL +E G
Sbjct: 73 PGRSVFVVRFAGIDNREAAEALIGQTLMVPADDRP--ELEEGEFHLLDLVGLEARLSADG 130
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
G V + + G +LE+K T ++PF + V EV++ +
Sbjct: 131 DAIGTVSDLIS-GGNELLELKTPDGDTLMVPFVEAIVPEVHVDDG 174
>gi|182680253|ref|YP_001834399.1| 16S rRNA-processing protein RimM [Beijerinckia indica subsp. indica
ATCC 9039]
gi|209573543|sp|B2IDX8|RIMM_BEII9 RecName: Full=Ribosome maturation factor rimM
gi|182636136|gb|ACB96910.1| 16S rRNA processing protein RimM [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 173
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 20 NGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMY-RKNKRFIATFSGIDNIHSASEL 76
GEV + S+ P ++ Y S+ + I + KN F+A G+ +A L
Sbjct: 2 RGEVRLQSFTEVPQAISAYGPLSDASGKKSFSIASLRLVKNAVFVARIEGVTTREAAEAL 61
Query: 77 RDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--DRQGKYW--GQVCGVYNFGAGSILE 132
+L LY R+ E EE F+ DL ++ F D GK G++ V NFG G ILE
Sbjct: 62 TNLSLYVSREALPPPEEEE--FYLADLIGLDAFVADADGKEVLFGRIADVLNFGGGDILE 119
Query: 133 IKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPLDSAGK 188
I + L+PFT+ V ++L ++L+ P + P+ D D
Sbjct: 120 IAPSDGGETRLLPFTRQVVPRIDLTARRVLVVPPEEV---EAQEPPEKDAGGDEPSP 173
>gi|33592898|ref|NP_880542.1| 16S rRNA-processing protein [Bordetella pertussis Tohama I]
gi|46397681|sp|Q7VXD7|RIMM_BORPE RecName: Full=Ribosome maturation factor rimM
gi|33572546|emb|CAE42126.1| 16S rRNA processing protein [Bordetella pertussis Tohama I]
gi|332382311|gb|AEE67158.1| 16S rRNA-processing protein RimM [Bordetella pertussis CS]
Length = 207
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 36/189 (19%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDN-----------RELRIL 51
LV + I + +G+ G V + ++ L + L R ++L
Sbjct: 13 DLVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARDVVASVPRAYQVL 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-D 110
+ +A +GID+ A LR + A R F +DE++ DL + D
Sbjct: 73 QARVHGGAVVAQLAGIDDRDQAEALRGCFVQAARSAFPAP--ADDEYYWVDLIGCALYSD 130
Query: 111 RQGKY--WGQVCGVYNFGAGSILEIKN---------------TMEK--TFLIPFTKFAVL 151
G+ G V V++ GA ++L++ + L+PF + +
Sbjct: 131 ADGEPRLLGVVDEVFDNGAHAVLKVLRQQIQPGQPGPVPLLDPKGRPLEELVPFVRAHIR 190
Query: 152 EVNLQENKI 160
V+L +I
Sbjct: 191 HVDLAARRI 199
>gi|50955113|ref|YP_062401.1| 16S rRNA processing protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|59798682|sp|Q6AEA0|RIMM_LEIXX RecName: Full=Ribosome maturation factor rimM
gi|50951595|gb|AAT89296.1| 16S rRNA processing protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 217
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 71/193 (36%), Gaps = 16/193 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN-----------DNRELRILKMYRK 56
+ + + HGL G + ++ + + P R+V + + L + ++
Sbjct: 20 LRVGRLTKAHGLKGAIKLELFTDEPG--KRFVPGAVFTLQVPTASKWHGKTLALRELRWY 77
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N + F G+D+ A L L+ QD ++ EED +++ L + R G
Sbjct: 78 NGHPVGFFDGVDDRTEAESLVKAILWVN-QDVRELPDEEDAWYDNQLVGLSA-HRDGAVV 135
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
G + V + +L IK L+PF K V EV+L + + P +
Sbjct: 136 GAIVRVDHLPGQDLLAIKTPGG-EVLVPFVKAIVPEVDLAARTVTLTPPPGLFEDLPDDA 194
Query: 177 PQYDCPLDSAGKK 189
P +
Sbjct: 195 PAAGDESEPVSPP 207
>gi|158522318|ref|YP_001530188.1| 16S rRNA processing protein RimM [Desulfococcus oleovorans Hxd3]
gi|158511144|gb|ABW68111.1| 16S rRNA processing protein RimM [Desulfococcus oleovorans Hxd3]
Length = 170
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 10/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M + + + I HG+ G V + S++ + + ++ D R I
Sbjct: 1 MNSSE-FLCVGKIVGIHGIRGTVRVYSHSGDIAEFSQGNTLFLRGPKGDERVCTIEWCKP 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F+ +D+ A+ + +L+A R LE+D ++ DL + FD++
Sbjct: 60 HGRHFLLGALELDSREQAAAVVGYELFALRASLP--PLEDDTYYWDDLIGLAVFDKK-TL 116
Query: 116 WGQVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G++ + + + + K L+P K V ++L + + +
Sbjct: 117 LGRITSIIPTPGNDVYVVTDADTGKETLVPALKSVVGHIDLAAGTMQVSLPESL 170
>gi|33241213|ref|NP_876155.1| 16S rRNA-processing protein [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|48474803|sp|Q7V9R4|RIMM_PROMA RecName: Full=Ribosome maturation factor rimM
gi|33238743|gb|AAQ00808.1| RimM protein, required for 16S rRNA processing [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 176
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 11/172 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRK---NKR 59
+ + I GL+G+V I+ ++ P +R++ Y N+ + L R+
Sbjct: 7 WLTIGKIVAPQGLSGKVRINPSSDFPERFIKSGDRWLQYDNEEPQKIQLNSGRQIPGKSI 66
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQ 118
++ F GID+ A L KL L EF DL ++ + G+
Sbjct: 67 YVVEFQGIDDREKAKALVGKKLLIDSSHRPT--LAPGEFHLLDLLGLKVRLKNDHREIGE 124
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + + G +LE++ K L+PF K V E+ LQE +++ P +
Sbjct: 125 VTNLTSAG-NDLLEVRLLSGKKVLVPFVKEIVPEIKLQEGWLMVCPPPGLFD 175
>gi|310821319|ref|YP_003953677.1| ribosome maturation factor rimm [Stigmatella aurantiaca DW4/3-1]
gi|309394391|gb|ADO71850.1| Ribosome maturation factor RimM [Stigmatella aurantiaca DW4/3-1]
Length = 173
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
L+ + HG+ GE+ I ++ + ++ + + R LRI + K I
Sbjct: 6 LLEFGYVARAHGIRGEIAIRTFDAASEALDVVERLSVRTRAGEERVLRIEDVRPTPKENI 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G+D +A L ++A R+D + + E EFF DL + D G+ G V
Sbjct: 66 VALEGVDTREAAEALVGAAVFAYREDLEPPQ--EGEFFQGDLVGLTAVDEAGQALGTVEE 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
++N G L I++ + ++PF V V+L + KI+I P+
Sbjct: 124 IWNTGEVPNLVIRSAGQAELIVPFADEFVPSVDLPQGKIVIRPL 167
>gi|68536268|ref|YP_250973.1| 16S rRNA-processing protein [Corynebacterium jeikeium K411]
gi|260578968|ref|ZP_05846871.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
gi|109893009|sp|Q4JV02|RIMM_CORJK RecName: Full=Ribosome maturation factor rimM
gi|68263867|emb|CAI37355.1| 16S rRNA processing protein [Corynebacterium jeikeium K411]
gi|258602942|gb|EEW16216.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
Length = 187
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 28/187 (14%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDNR----ELRILKMYRKNKRFIA 62
+ + + HG+ GEV +D + P + L + R +
Sbjct: 3 LQIGRVIKPHGVRGEVVVDPTTDTPELRFATGEVLKGKQAGKELSLTVRSFRPHQGRLLV 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ---------- 112
TF I + +A LR ++ +A + ++D F++ +LE + +
Sbjct: 63 TFEEIADRTAAESLRGVRFFA----APVHDEDDDGFYDHELEGLTAYLLAPGTDLKGDEI 118
Query: 113 --GKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G G+V V + AG +L I T K L+PF V V+L+E +++
Sbjct: 119 QLGDLVGEVVAVEHTPAGQLLVILIDAESQLPTAGKEVLVPFRHQIVPVVDLEEEILVLT 178
Query: 164 PIAAGLN 170
P L
Sbjct: 179 PPEGLLE 185
>gi|325197804|gb|ADY93260.1| 16S rRNA processing protein RimM [Neisseria meningitidis G2136]
gi|325203684|gb|ADY99137.1| 16S rRNA processing protein RimM [Neisseria meningitidis
M01-240355]
Length = 160
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTVSVTLEAGKVVNSELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI++ A LR + R+ F E EDE++ TDL M ++ G+V +
Sbjct: 61 GINDRDLAFSLRGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 159
>gi|296285087|ref|ZP_06863085.1| 16S rRNA processing protein [Citromicrobium bathyomarinum JL354]
Length = 159
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR-FIATFSGID 68
MA + HG+ GEV + + ++ L + +++ +L K+ NK IA F+ +
Sbjct: 1 MAAVTGAHGVAGEVRLKLFGDDVDALKAHKTFNDG--QLTASKIRSDNKGGAIARFAEVP 58
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ +A LR L R LEE EF++ DL + G G V V N+GA
Sbjct: 59 DRTAAEALRGTLLSVSRDALPA--LEEGEFYHADLIGLPVVTTDGAAVGHVIDVANYGAT 116
Query: 129 SILEIK-----NTMEKTFLIPFTKFAVLEVNLQENKILI 162
I+EI KTF++P AV E + + +++I
Sbjct: 117 DIVEIAHDPVPEKGPKTFMVPMIPTAVPEWD--DKRLVI 153
>gi|213161440|ref|ZP_03347150.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 152
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 26 DSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL 81
S + + Y + + +++++ N+ I G+D+ +A+ L + ++
Sbjct: 2 FSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEI 61
Query: 82 YAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME--- 138
LEE +++ DL + +G G+V + G+ +L IK ++
Sbjct: 62 VVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAF 119
Query: 139 --KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
K L+PF + +V+L I +D
Sbjct: 120 GIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 151
>gi|329114610|ref|ZP_08243369.1| Ribosome maturation factor RimM [Acetobacter pomorum DM001]
gi|326696090|gb|EGE47772.1| Ribosome maturation factor RimM [Acetobacter pomorum DM001]
Length = 180
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
L+LM +G HG+ G V + +YA NP L + +D L +
Sbjct: 3 SNLILMGVVGKPHGVRGLVRVRAYAENPQTLEQSGALQDDQGRKWFLSWRGADSVAELRD 62
Query: 65 SG---IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+ + + +A L + +LY R E EE+EF++ DL ME F G G+V
Sbjct: 63 ANGTPLADRDAAQALVNTRLYVPRTALP--EPEEEEFYHADLIGMEAF-ENGLSLGRVVM 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V+++GAG+ LE+ + L+PFT+ V +V+L++ I +
Sbjct: 120 VHDYGAGASLELSDGS----LVPFTQACVPQVHLEQRTITVVRPEE 161
>gi|50842920|ref|YP_056147.1| 16S rRNA processing protein RimM [Propionibacterium acnes
KPA171202]
gi|289426523|ref|ZP_06428266.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK187]
gi|289427767|ref|ZP_06429478.1| 16S rRNA processing protein RimM [Propionibacterium acnes J165]
gi|295130977|ref|YP_003581640.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK137]
gi|59798678|sp|Q6A7S6|RIMM_PROAC RecName: Full=Ribosome maturation factor rimM
gi|50840522|gb|AAT83189.1| probable 16S rRNA processing protein RimM [Propionibacterium acnes
KPA171202]
gi|289153251|gb|EFD01969.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK187]
gi|289159031|gb|EFD07224.1| 16S rRNA processing protein RimM [Propionibacterium acnes J165]
gi|291376028|gb|ADD99882.1| 16S rRNA processing protein RimM [Propionibacterium acnes SK137]
gi|313773599|gb|EFS39565.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL074PA1]
gi|313794055|gb|EFS42079.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA1]
gi|313801442|gb|EFS42693.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA2]
gi|313807878|gb|EFS46359.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA2]
gi|313811651|gb|EFS49365.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL083PA1]
gi|313813540|gb|EFS51254.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL025PA1]
gi|313819663|gb|EFS57377.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL046PA2]
gi|313822231|gb|EFS59945.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA1]
gi|313823536|gb|EFS61250.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA2]
gi|313825863|gb|EFS63577.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL063PA1]
gi|313829543|gb|EFS67257.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL063PA2]
gi|313831392|gb|EFS69106.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL007PA1]
gi|313835004|gb|EFS72718.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL056PA1]
gi|313839838|gb|EFS77552.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL086PA1]
gi|314924625|gb|EFS88456.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL036PA3]
gi|314962011|gb|EFT06112.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA2]
gi|314963591|gb|EFT07691.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL082PA1]
gi|314968577|gb|EFT12675.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA1]
gi|314974267|gb|EFT18363.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL053PA1]
gi|314976728|gb|EFT20823.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL045PA1]
gi|314978894|gb|EFT22988.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL072PA2]
gi|314984430|gb|EFT28522.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA1]
gi|314986446|gb|EFT30538.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA2]
gi|314990806|gb|EFT34897.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA3]
gi|315079445|gb|EFT51438.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL053PA2]
gi|315081328|gb|EFT53304.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL078PA1]
gi|315083529|gb|EFT55505.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL027PA2]
gi|315087209|gb|EFT59185.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA3]
gi|315089383|gb|EFT61359.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL072PA1]
gi|315095407|gb|EFT67383.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL038PA1]
gi|315106744|gb|EFT78720.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL030PA1]
gi|315109087|gb|EFT81063.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL030PA2]
gi|327328332|gb|EGE70094.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL096PA2]
gi|327334318|gb|EGE76032.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL097PA1]
gi|327444116|gb|EGE90770.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL043PA2]
gi|327445005|gb|EGE91659.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL043PA1]
gi|327446488|gb|EGE93142.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL013PA2]
gi|327451926|gb|EGE98580.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL092PA1]
gi|328752244|gb|EGF65860.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL020PA1]
gi|328760083|gb|EGF73662.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL099PA1]
gi|332675857|gb|AEE72673.1| ribosome maturation factor RimM [Propionibacterium acnes 266]
Length = 179
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 5/164 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D + + EF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEPNDDPDDPD-EFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
I + + L+PF V V++ +I++ I L++ +
Sbjct: 136 I-DVSGEEHLVPFVHQLVPTVDVASGRIVVSGIPGLLDSNAEEA 178
>gi|160872661|ref|ZP_02062793.1| 16S rRNA processing protein RimM [Rickettsiella grylli]
gi|159121460|gb|EDP46798.1| 16S rRNA processing protein RimM [Rickettsiella grylli]
Length = 170
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILKMYR-- 55
MV+ K +L+ +IG +G+NG V I+SY N ID + L + R IL +
Sbjct: 1 MVR--KKILVGSIGKPYGINGWVKINSYTEPFTNLIDYRPWYLEAPGKRSSPILVGVKKC 58
Query: 56 --KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
++ +A F SA + K+Y +R F L E++ DLE ++ ++R+
Sbjct: 59 CLHGQQLLALFENSTTPESARFYTNYKIYVERDQF--FPLHAGEYYWADLEGLKVYNREN 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
Y G + ++ GA +L I + +K +L+PF + ++L+ +++D
Sbjct: 117 IYLGIIQIIFATGANDVLVI--SDKKRYLVPFLFNQTIQSIDLKTKIMIVD 165
>gi|119486516|ref|ZP_01620574.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
gi|119456418|gb|EAW37549.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
Length = 203
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSN--DNRELRILKMYRKN 57
+ + + + I GL+GEV ++ + P R++L + + + +L+ +
Sbjct: 1 MSEWIEIGKIVAAQGLDGEVRVNPNTDFPERFLEPGTRWLLQPGQSEPQPIELLEGRQIP 60
Query: 58 KR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
R ++ GI+N A LR+ L+ + D LEE+EF+ DL +E F++ +
Sbjct: 61 GRSLYVLELEGIENREQAEALRNSTLFVSKSDRP--HLEENEFYLVDLIGLEVFNQLTKE 118
Query: 115 YWGQVCGVYNFGAGSILEIK-------------NTMEKT-----------------FLIP 144
G V + G +LE++ + + + LIP
Sbjct: 119 VIGVVISLVPAG-NDLLEVELYSSTLEPSEIPLDPDQSSADVSPTRRKKRKSKPKTVLIP 177
Query: 145 FTKFAVLEVNLQENKILIDPIAAGLN 170
F K V V+L +N++ I P +
Sbjct: 178 FVKEIVPVVDLNKNRVEITPPVGLIE 203
>gi|330994000|ref|ZP_08317930.1| Ribosome maturation factor rimM [Gluconacetobacter sp. SXCC-1]
gi|329758946|gb|EGG75460.1| Ribosome maturation factor rimM [Gluconacetobacter sp. SXCC-1]
Length = 183
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKRFIATF-- 64
VLM +G HG+ G V++ SY P DL Y L + R R+ + IA
Sbjct: 6 VLMGVVGRPHGVRGLVHVHSYTAVPEDLATYDGLVDDQGRPWRLSW----HGTGIARLHD 61
Query: 65 ---SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVC 120
ID+ +A +L + KLY R +EDEF+ DL +E ++ + G+V
Sbjct: 62 AAGQAIDSREAARQLVNRKLYVPRASLPAP--DEDEFYFADLVGLEAREQGTDRVLGRVG 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V+++GAG+ LEI + L+PFT+ V VN++ I I
Sbjct: 120 AVHDYGAGTSLEINGAGG-SLLLPFTRACVPVVNVRGGWIDI 160
>gi|311744104|ref|ZP_07717910.1| 16S rRNA processing protein RimM [Aeromicrobium marinum DSM 15272]
gi|311313234|gb|EFQ83145.1| 16S rRNA processing protein RimM [Aeromicrobium marinum DSM 15272]
Length = 181
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 8/185 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN---DNRELRILKMYRKNKRFIAT 63
LV++ +G HG+ GE+ +D + P R+ S+ R L + R +
Sbjct: 2 LVVVGRVGRAHGIRGELNVDPRTDEPER--RFAPGSSVVCGGRTLTVRTARSHGGRLVVA 59
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ I + +A + + A+ + +E +++ L + + G G+V G+
Sbjct: 60 FAEITDRTAAEQFHGQVVEAEVDPDVLPDDDE-SYYDHQLVGL-VVRQGGAEVGRVTGLL 117
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPL 183
+ A L + + L+PF V EV+L +++ + L+ D
Sbjct: 118 HLPAQDTLVL-DVDGAEVLVPFVVELVPEVDLGAGHLVVADVPGLLDPDAADVAVDDGAA 176
Query: 184 DSAGK 188
+
Sbjct: 177 EDGAD 181
>gi|161349300|ref|ZP_02096685.1| 16S rRNA processing protein RimM [Coxiella burnetii 'MSU Goat
Q177']
gi|164601552|gb|EDQ95151.1| 16S rRNA processing protein RimM [Coxiella burnetii 'MSU Goat
Q177']
Length = 168
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVL-YSNDNRELRILKMYRKN 57
+K + V++ + +GL G + + S+ +N ++ + + ++N+ + L++
Sbjct: 1 MKSNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHE 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ID+ +A + + +R L+E +++ TDL + + G G
Sbjct: 61 PFLVVKLENIDDPETAXHYTNDLIAIERGALGA--LKEGDYYWTDLIGLAVVNTHGIELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + G+ +L +++ E+ LIP+T + + ++L++ I+++
Sbjct: 119 TVDSLIETGSNDVLVVRSK-ERERLIPYTSYTIQSIDLEKKIIVVE 163
>gi|71903302|ref|YP_280105.1| 16S rRNA-processing protein RimM [Streptococcus pyogenes MGAS6180]
gi|109893057|sp|Q48U56|RIMM_STRPM RecName: Full=Ribosome maturation factor rimM
gi|71802397|gb|AAX71750.1| 16S rRNA processing protein [Streptococcus pyogenes MGAS6180]
Length = 172
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S ++ + + L+ + ++ E+ I+ ++
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDQFVQEVTIVSHRKQKH 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + +I++ + + L + + +L+E EF+ + M +++ + G
Sbjct: 62 FDIIKLKDMYHINAIEKYKGYTLKVSKAN--QGDLQEGEFYYHQIIGMAVYEKD-RLIGY 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 VKEILQPGANDVWVVKRQGKRDLLLPYIPPVVLNVDVPNKRVDVELMEGLDDED 172
>gi|150016062|ref|YP_001308316.1| 16S rRNA-processing protein RimM [Clostridium beijerinckii NCIMB
8052]
gi|189040129|sp|A6LSN0|RIMM_CLOB8 RecName: Full=Ribosome maturation factor rimM
gi|149902527|gb|ABR33360.1| 16S rRNA processing protein RimM [Clostridium beijerinckii NCIMB
8052]
Length = 165
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ L + I THG+ GEV + + R E +IL + + R I
Sbjct: 1 MGNLFKIGQIINTHGIKGEVKVYPLTEDVNKFKRLETVLVGGEEKKILGVKFQKDRVILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID+++ A + + R++ + EL D ++ +DL+E +D K G++ V
Sbjct: 61 IEGIDSMNDAETYKQKYIEIPREN--EPELPPDTYYVSDLKECTIYDTNEKEIGRIFDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAV 150
+ + IK K LIP + V
Sbjct: 119 STPNNDVYWIKEP--KELLIPVLRDIV 143
>gi|301793934|emb|CBW36330.1| 16S rRNA processing protein [Streptococcus pneumoniae INV104]
gi|332204785|gb|EGJ18850.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47901]
Length = 172
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ ++ + I ++
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I++ + + L +D D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINTIEKYKRYSLKVAEEDLND--LDDGEFYYHEIIGLEVYEGD-SLVGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED 172
>gi|238899327|ref|YP_002925010.1| 16S rRNA processing protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229467088|gb|ACQ68862.1| 16S rRNA processing protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 174
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRE----LRILKMYRKNKR 59
L + V++ IG+T+ + G + + S+ + Y + ++ + I +
Sbjct: 5 LKQPVIVGKIGSTYSVRGWLKMFSFTEKTDSIFDYQPWFIQHKNHWQFIDIEDWKCHQQD 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F+ ID A + ++ LEE +++ D+ + G G V
Sbjct: 65 FLLKIKNIDEKEKAQHFVNAEITVDASQLPV--LEEGDYYWKDIIGCQVIHISGDVIGTV 122
Query: 120 CGVYNFGAGSILEIKN--TMEKTFLIPFT-KFAVLEVNLQENKILID 163
+ GA ++ ++ K+ L+PF V +V+ +I +D
Sbjct: 123 VSMIETGANDVMVVQTQIQDHKSCLVPFLCDQVVKKVDKVMQQIQVD 169
>gi|28210936|ref|NP_781880.1| 16S rRNA-processing protein RimM [Clostridium tetani E88]
gi|28203375|gb|AAO35817.1| 16S rRNA processing protein rimM [Clostridium tetani E88]
Length = 170
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THGL GE+ ++ +N + E ++ N + +
Sbjct: 7 MEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLNDKVVLK 66
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID I A++ R+ + KR+D EL E ++ D+ + D G Y G+V V
Sbjct: 67 IQGIDGIEIANKYRNKYIEVKRED--AVELPEGRYYVADIIGCKVLDEDGNYLGKVKEVI 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
+ + ++ +K LIP K V++
Sbjct: 125 HTKNNDVYWVE--GKKELLIPVLKTIVVK 151
>gi|209573739|sp|A5CQR0|RIMM_CLAM3 RecName: Full=Ribosome maturation factor rimM
Length = 211
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 13/172 (7%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-----NRELRILKMYRKNKR 59
+ + HGL G V ++ + ++P + L + R L + ++ N
Sbjct: 18 RVGRLTKAHGLKGAVKLELFTDDPDKRFVPGAEFSLQVPESSPWHGRTLTLTELRWYNSH 77
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G+ + +A L L+ DE E D +++ L + R G G V
Sbjct: 78 PVGFFDGVADRTAAESLAKAILWMTP--PADEAAEPDAWYDHQLVGLTVL-RDGVEVGTV 134
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V +F A +L + T L+PF + V V+++ +++ P
Sbjct: 135 SLVDHFPAQDLLHVDTPSG-TVLVPFVQAIVPSVDVEAGTLVVTPPLGLFEE 185
>gi|300814492|ref|ZP_07094753.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511410|gb|EFK38649.1| 16S rRNA processing protein RimM [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 166
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNK 58
M + L + I T G+ GE+ + + +N ++ Y+L + I +
Sbjct: 1 MKSKNDLTCIGEIINTFGIKGELKVRPFTDNIKRYSKLDYILLGQNKDSYEISSVRYDKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
G D+I+ + ++ LY D E+L + F+ DL E +D ++ G
Sbjct: 61 FVFLKIKGHDDINDVLKFKNSYLYIY--DKDREKLPQGTFYVWDLIGKEVYDSNNEFLGI 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + ++ A +L IKN + + IP K V ++ + I+ DPI
Sbjct: 119 LEKIDSYPANDVLVIKNENFR-YYIPNVKEFVKDI---GDVIIADPIEGM 164
>gi|293604530|ref|ZP_06686935.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292817111|gb|EFF76187.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 205
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 34/195 (17%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVL-----------YSNDNRELRIL 51
L+ + I +G+ G V + ++ N L +++ L ++ +++L
Sbjct: 13 DLIELGRISAAYGVKGWVKVQPHSANAEVLLSASQWWLTRPVPELARGAVASAPVAIKVL 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD- 110
+ + +A +GI + A LR + A R F E EDE++ DL +
Sbjct: 73 QARSQGATVVAQLAGIADRDQAEALRGYSVQAPRGSFPAPE--EDEYYWVDLIGCALYTS 130
Query: 111 RQGKY--WGQVCGVYNFGAGSILEI---------------KNTMEKTFLIPFTKFAVLEV 153
G+ G V V + GA ++L++ L+PF + + V
Sbjct: 131 ANGEPTLIGVVDEVLDNGAHAVLKVLCQKVGAEGPEPILNAKGRPAEMLVPFVRAHIHAV 190
Query: 154 NLQENKILIDPIAAG 168
+L +I D A
Sbjct: 191 DLAARRIDSDWPADL 205
>gi|212716749|ref|ZP_03324877.1| hypothetical protein BIFCAT_01686 [Bifidobacterium catenulatum DSM
16992]
gi|212660453|gb|EEB21028.1| hypothetical protein BIFCAT_01686 [Bifidobacterium catenulatum DSM
16992]
Length = 195
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + E + R+I
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPGAVLYTKDGEEEYVVENSRTFKNRWIV 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG----- 117
F GIDN + + LY + D ++ LE DE++ DL +E + G
Sbjct: 70 KFEGIDNRDQSEAANGIVLYGEADD-PEDMLEADEWYPKDLIGLEARLAENNMLGLEPGV 128
Query: 118 ------QVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKIL 161
V V A +L+I+ E + L+PF V +++L++ +
Sbjct: 129 VVGKVVDVIEV----AQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEKGYLT 184
Query: 162 IDPIAAGL 169
+DP +
Sbjct: 185 LDPPGGLI 192
>gi|94987015|ref|YP_594948.1| RimM protein, required for 16S rRNA processing [Lawsonia
intracellularis PHE/MN1-00]
gi|172046239|sp|Q1MQV0|RIMM_LAWIP RecName: Full=Ribosome maturation factor rimM
gi|94731264|emb|CAJ54627.1| RimM protein, required for 16S rRNA processing [Lawsonia
intracellularis PHE/MN1-00]
Length = 173
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 6/170 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN---RELRILKMYRKNKRFI 61
++LV + + HG+ GE+ + Y ++ V N ++ I+ +
Sbjct: 3 EQLVAVGVLSRPHGIKGEIRLIRYTDSIDVFLGEVFLQKSNSLPKKAEIISSRIHQGVAL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYWGQVC 120
F G + + LR L R E+E +E + DL D + G++
Sbjct: 63 VCFKGFSDRSAVEVLRGQTLLVSRSFLP--EIESNESYLCDLLGFSVVLDNTDEVIGKLE 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G + I K L+P VLEV+ I I+P L
Sbjct: 121 YVSFPGGQELWSIITPEGKEVLLPAIPEFVLEVDTNAQLIRINPPKGLLE 170
>gi|313763661|gb|EFS35025.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL013PA1]
gi|313816838|gb|EFS54552.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL059PA1]
gi|314914663|gb|EFS78494.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL005PA4]
gi|314919224|gb|EFS83055.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA1]
gi|314920866|gb|EFS84697.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA3]
gi|314930544|gb|EFS94375.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL067PA1]
gi|314954296|gb|EFS98702.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL027PA1]
gi|314957425|gb|EFT01528.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL002PA1]
gi|315099288|gb|EFT71264.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL059PA2]
gi|315100478|gb|EFT72454.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL046PA1]
gi|327455039|gb|EGF01694.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA3]
gi|327457673|gb|EGF04328.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL083PA2]
gi|328755129|gb|EGF68745.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL087PA1]
gi|328758093|gb|EGF71709.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL025PA2]
Length = 179
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 5/164 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGCLIVAFDEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D + + EF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEPNDDPDDPD-EFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
I + + L+PF V V++ I++ I L++ +
Sbjct: 136 I-DVSGEEHLVPFVHQLVPTVDVASGWIVVSGIPGLLDSNAEEA 178
>gi|306820934|ref|ZP_07454554.1| 16S rRNA processing protein RimM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551048|gb|EFM39019.1| 16S rRNA processing protein RimM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 165
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIAT 63
+K + + I T GL GE I Y + + Y +Y + + + + N IA
Sbjct: 4 NKRIRIGKIVKTQGLKGEFKIYPYTTDSSSFSSYKNIYVDGVGDYSFEYVRQNNNVLIAK 63
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G+++I L + ++ + ++EE E+ ++L ++ +D + G++ V
Sbjct: 64 FKGLNSIDDLPALINKDIFIDYSE--KRQMEEGEYLISELIGLKVYDGE-NLIGEIKDVL 120
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+GA + + + LIP + V ++++ K++++ I
Sbjct: 121 LYGANDVFCVIDMENNERLIPNVRQFVKNIDIENKKVIVNLIKGM 165
>gi|160947513|ref|ZP_02094680.1| hypothetical protein PEPMIC_01447 [Parvimonas micra ATCC 33270]
gi|158446647|gb|EDP23642.1| hypothetical protein PEPMIC_01447 [Parvimonas micra ATCC 33270]
Length = 166
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN-RYVLYSNDNRELRILKMYR-KNKRFIAT 63
+ + +A I HG+ G V I S +N N + Y + + I + + + T
Sbjct: 2 EFIEVAKIINVHGIKGTVKIYSLTSNIDRFNADCIFYIDKKIPVTIKSVKELSSDLALLT 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ DNI+ E ++ L+ + + EL EDE++ L ++ +D+ K+ G++ V
Sbjct: 62 FNEYDNINQVLEFKNKGLFIEESNL--LELPEDEYYIYKLIGVDVYDQDNKFIGKIKNVL 119
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
A + +I + K IP K + +V+++++ + + I L++
Sbjct: 120 TTLANDVYDI-DYNGKDVYIPAVKEFIKDVDIEKSIMKVSIIDGMLDD 166
>gi|255320194|ref|ZP_05361379.1| 16S rRNA processing protein RimM [Acinetobacter radioresistens
SK82]
gi|255302633|gb|EET81865.1| 16S rRNA processing protein RimM [Acinetobacter radioresistens
SK82]
Length = 182
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNIFDYLPWYIETKAGWQIVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + +A L ++ + + DE++ +DL+ + +
Sbjct: 68 LVVSLKGVSDRTAADNLVGANIWISKSQLPQPGV--DEYYWSDLKGLTVLGLDEEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + +IP+ K V +V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVMVVRATTDSVDGEERMIPWHKDVVQQVDLETGRIYVN 177
>gi|269793023|ref|YP_003317927.1| 16S rRNA processing protein RimM [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100658|gb|ACZ19645.1| 16S rRNA processing protein RimM [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 181
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPID----------LNRYVLYSNDNRELRI 50
M V + I THG+ G + + + P L + REL+I
Sbjct: 1 MGSDRSRVTVGCIVGTHGIKGSLKLKPLTDYPERFLHMETLYLELPQVKGRHRPPRELKI 60
Query: 51 LKMYRK--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
L + + FI T GID I A +L+ + +D LEE ++ D+ +E
Sbjct: 61 LDVRFQDGKDLFIVTLEGIDTIEMAEDLKGALITVAPED--RVPLEEGVYWIDDIIGLEV 118
Query: 109 F-DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
D G V V G+ + E++ +IP T + +V+L+ +I + +
Sbjct: 119 VEDETDAVLGVVEDVMPTGSNDVYEVRTPDGVLKMIPATGEVIRKVDLEARQIRVHLLEG 178
Query: 168 GLN 170
+
Sbjct: 179 LWD 181
>gi|148272549|ref|YP_001222110.1| 16S rRNA-processing protein RimM [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830479|emb|CAN01414.1| putative 16S rRNA processing protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 193
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-----NRELRILKMYRKNKRF 60
M + HGL G V ++ + ++P + L + R L + ++ N
Sbjct: 1 MGRLTKAHGLKGAVKLELFTDDPDKRFVPGAEFSLQVPESSPWHGRTLTLTELRWYNSHP 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G+ + +A L L+ DE E D +++ L + R G G V
Sbjct: 61 VGFFDGVADRTAAESLAKAILWMTP--PADEAAEPDAWYDHQLVGLTVL-RDGVEVGTVS 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
V +F A +L + T L+PF + V V+++ +++ P
Sbjct: 118 LVDHFPAQDLLHVDTPSG-TVLVPFVQAIVPSVDVEAGTLVVTPPLGLFEE 167
>gi|145588705|ref|YP_001155302.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|209573589|sp|A4SW74|RIMM_POLSQ RecName: Full=Ribosome maturation factor rimM
gi|145047111|gb|ABP33738.1| 16S rRNA processing protein RimM [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 188
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 21/181 (11%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNR------------- 46
LD L+ + I GL G+V + ++ +P+ L ++ V S R
Sbjct: 4 PSLDNLIELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTEEAT 63
Query: 47 --ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLE 104
+ ++ + + T G+ + A L+ ++ R F E D ++ DL
Sbjct: 64 LTQYKVKSAKMHSGNVVLTLDGVSDRDQALALKGARILLDRDAFPKAE--SDSYYWVDLI 121
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT--FLIPFTKFAVLEVNLQENKILI 162
+ + Q + G V V GA ++ I + KT +L+PF K V V+L + +
Sbjct: 122 GCKAKNLQDEILGDVIDVTENGAHGVIAIGDISTKTIQYLVPFVKEVVRNVDLPNKLLTL 181
Query: 163 D 163
D
Sbjct: 182 D 182
>gi|59803034|sp|Q895M3|RIMM_CLOTE RecName: Full=Ribosome maturation factor rimM
Length = 164
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+++ + + I THGL GE+ ++ +N + E ++ N + +
Sbjct: 1 MEQFLKIGLIINTHGLKGELKVNPQTDNIDRFKKLKRVYIAGEEKQVEGCKFLNDKVVLK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID I A++ R+ + KR+D EL E ++ D+ + D G Y G+V V
Sbjct: 61 IQGIDGIEIANKYRNKYIEVKRED--AVELPEGRYYVADIIGCKVLDEDGNYLGKVKEVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
+ + ++ +K LIP K V++
Sbjct: 119 HTKNNDVYWVE--GKKELLIPVLKTIVVK 145
>gi|50086297|ref|YP_047807.1| 16S rRNA-processing protein RimM [Acinetobacter sp. ADP1]
gi|59798250|sp|Q6F7I0|RIMM_ACIAD RecName: Full=Ribosome maturation factor rimM
gi|49532273|emb|CAG69985.1| 16S rRNA processing protein [Acinetobacter sp. ADP1]
Length = 182
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + + + ++A L ++ + + + DE++ +DL+ + +
Sbjct: 68 LVVSLKNVSDRNAAESLIGSTIWVAKSQLP--KTDVDEYYWSDLKGLTVLGLDEEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|307297776|ref|ZP_07577582.1| 16S rRNA processing protein RimM [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306917036|gb|EFN47418.1| 16S rRNA processing protein RimM [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 185
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 11/174 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILK---MYR 55
L+++V + I HGL GE+ + + +LY R + R
Sbjct: 7 KSLEEMVPIGRIVKPHGLRGEMKVKVALEDETAFKEIQEVLLYDEKTRSRFVTSIDGARR 66
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K +I F GID++ A L +Y + + EL++ E++ + FD ++
Sbjct: 67 ATKGWILHFEGIDSMGQAERLVGFHIYVEERVLP--ELKQGEYYYFQILGSSVFDENRRF 124
Query: 116 WGQVCGVYNFGAGSILEIKNTME---KTFLIPFTKFAVLEVNLQENKILIDPIA 166
G V + GA ++ + + + LIP + +LE+N ++ I+ +
Sbjct: 125 IGTVNDIIETGANDVMVVVREEDLTVREELIPIIRDYILELNFEDKTIVARSME 178
>gi|71891961|ref|YP_277691.1| 16S rRNA-processing protein RimM [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|109893000|sp|Q493M2|RIMM_BLOPB RecName: Full=Ribosome maturation factor rimM
gi|71796067|gb|AAZ40818.1| 16S rRNA processing protein [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 189
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRK 56
M+ V++ I +G+ G V I S+ ++ Y Y + +E+ + K
Sbjct: 14 MIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFLDKWKLI 73
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
KR+I G+ N +SA L + F +DE++ DL QG
Sbjct: 74 GKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCI--NDDEYYWKDLIGCVVITVQGVLL 131
Query: 117 GQVCGVYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNLQENKILID 163
G + + A +L +K K LIPF K + +NL + +D
Sbjct: 132 GDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRTVTVD 184
>gi|322388115|ref|ZP_08061721.1| 16S rRNA processing protein RimM [Streptococcus infantis ATCC
700779]
gi|321141136|gb|EFX36635.1| 16S rRNA processing protein RimM [Streptococcus infantis ATCC
700779]
Length = 172
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I GL GE+ + S + + + L+ +R + I ++
Sbjct: 2 NYFNVGKIVNMQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDRFVRTVVIASHRKQKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I F + +I+ + + L ++ D L++ EF+ ++ +E ++ G
Sbjct: 62 FDIIKFKDMYHINDIEKYKGHSLKVAEENLND--LDDGEFYYHEIIGLEVYEGD-NLIGT 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + GA + +K ++ L+P+ VL +++ N++ ++ + +
Sbjct: 119 IKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNIDIPNNRVDVELLEGLDDED 172
>gi|323341762|ref|ZP_08081995.1| 16S rRNA processing protein RimM [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464187|gb|EFY09380.1| 16S rRNA processing protein RimM [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 181
Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 9/166 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIA 62
+++ I G+ GE+ + + D + + I R + +
Sbjct: 20 IIIGIIQKPFGIKGELKVAPKTDFVEDRFAPGQRVHFKLGGKTTDYVIESYRRHHGSILI 79
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G+++++ ++ R+ EL ED+++ DLE F +G G V +
Sbjct: 80 KFEGLNSLNDVEFFHKGEISIDRES--QHELPEDQYYFIDLEGCTVF-SEGVELGVVSEI 136
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A +L IK E+ L+PF + + +V+ + +I I+ +
Sbjct: 137 METPAHPVLRIK-AEERDILVPFVERFIQDVDTKSKRIDINWMEGL 181
>gi|167619158|ref|ZP_02387789.1| 16S rRNA-processing protein [Burkholderia thailandensis Bt4]
Length = 229
Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA------NNPIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 SDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + + G SI+ ++ LIPF V V +I++D
Sbjct: 170 GKVADMIDNGVHSIMRVECPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVD 224
>gi|225351185|ref|ZP_03742208.1| hypothetical protein BIFPSEUDO_02775 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158641|gb|EEG71883.1| hypothetical protein BIFPSEUDO_02775 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 195
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+L+ + IG GL GEV + + + P + + E + R+I
Sbjct: 10 ELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFAPGAVLYTKDGEEEYVVENSRTFKNRWII 69
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG----- 117
F GIDN + + LY + D ++ LE DE++ DL +E + G
Sbjct: 70 KFEGIDNRDQSEAANGIVLYGEADD-PEDMLEADEWYPKDLIGLEARLAEDNMLGLEPGV 128
Query: 118 ------QVCGVYNFGAGSILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKIL 161
V V A +L+I+ E + L+PF V +++L+E +
Sbjct: 129 VVGKVVDVIEV----AQWLLKIRLANPVKDADGVVVENSALVPFVDELVPDIDLEEGYLT 184
Query: 162 IDPIAAGL 169
+DP +
Sbjct: 185 LDPPGGLI 192
>gi|323144361|ref|ZP_08078970.1| 16S rRNA processing protein RimM [Succinatimonas hippei YIT 12066]
gi|322415863|gb|EFY06588.1| 16S rRNA processing protein RimM [Succinatimonas hippei YIT 12066]
Length = 176
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRFIATF 64
M +G+T+G+ G + + S+ P +L Y + + RE+++ FI
Sbjct: 9 MGRLGSTYGIKGWLKVQSFTEQPENLFDYSPWFIRRRGEEWREVQVEAWKPHGDGFIVKL 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ +D A +++ KR E EF+ DLE + G V + +
Sbjct: 69 NAVDVREEAQLYTGMEIGIKRSSLPPAS--EGEFYLCDLEGCKVIGLNEVELGVVSRIMD 126
Query: 125 FGAGSILEIKNTM-----EKTFLIP-FTKFAVLEVNLQENKILID 163
GA +L + + K LIP + ++L+ I +
Sbjct: 127 HGAAPLLVVSPSDRTKNGPKERLIPCVIGPIITSIDLEAKIIRAE 171
>gi|226953783|ref|ZP_03824247.1| 16S rRNA processing protein [Acinetobacter sp. ATCC 27244]
gi|294651733|ref|ZP_06729033.1| 16S rRNA processing protein [Acinetobacter haemolyticus ATCC 19194]
gi|226835454|gb|EEH67837.1| 16S rRNA processing protein [Acinetobacter sp. ATCC 27244]
gi|292822355|gb|EFF81258.1| 16S rRNA processing protein [Acinetobacter haemolyticus ATCC 19194]
Length = 182
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF----DRQGKY 115
+ + G+ + A L ++ + ++ DE++ +DL+ + F D Q
Sbjct: 68 LVVSLKGVIDRTGAENLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVFGLGEDEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ +K T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIFELFETGANDVMVVKATPDSIDAEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|299768578|ref|YP_003730604.1| 16S rRNA-processing protein RimM [Acinetobacter sp. DR1]
gi|298698666|gb|ADI89231.1| 16S rRNA-processing protein RimM [Acinetobacter sp. DR1]
Length = 182
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ G+ + A L ++ + ++ DE++ +DL+ + F +
Sbjct: 68 LVVALKGVSDRTGAENLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVFGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G++ ++ GA ++ + T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGKIHELFETGANDVMVVHATPDSVDSEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|260550863|ref|ZP_05825070.1| RimM protein [Acinetobacter sp. RUH2624]
gi|260406173|gb|EEW99658.1| RimM protein [Acinetobacter sp. RUH2624]
Length = 182
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + A L ++ + ++ DE++ +DL+ + +
Sbjct: 68 LVVSLKGVSDRTGAESLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|320354481|ref|YP_004195820.1| 16S rRNA processing protein RimM [Desulfobulbus propionicus DSM
2032]
gi|320122983|gb|ADW18529.1| 16S rRNA processing protein RimM [Desulfobulbus propionicus DSM
2032]
Length = 180
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSND----NRELRILKMYRKNK 58
D V + I HG+ GE+ I S+ P +LNRY + ++D E +
Sbjct: 10 DDFVALGLITRPHGIRGELKIRSFTEKPENLNRYRRLFLASDVSSAKLEFTNVLARVNGS 69
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + A EL + ++ +D EF+ L+ + G+ G
Sbjct: 70 SVILRLKECTDRDRAEELVGMLIWVPSKDLPPT--AAGEFYLHSLQGKQARTTDGQELGT 127
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V G +IL I+ + +L+P + V++ EN +++D L+
Sbjct: 128 VETFLAGGGQNILVIRQ-GGEEYLVPVVGAFI--VSITENMVILDLPLGLLD 176
>gi|124026761|ref|YP_001015876.1| 16S rRNA-processing protein [Prochlorococcus marinus str. NATL1A]
gi|166226463|sp|A2C552|RIMM_PROM1 RecName: Full=Ribosome maturation factor rimM
gi|123961829|gb|ABM76612.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. NATL1A]
Length = 176
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSND---NRELRILKM 53
M + DK + + I GL G++ I ++ P R++ +++ +L K+
Sbjct: 1 MFEKDKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQ 112
++ + G+ SA E+ KL L +DE+ DL +E
Sbjct: 61 IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPM--LSKDEYHYHDLIGLEARSGPS 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + G +LEI+ K L+PF K V E+ ++E +LI+P L
Sbjct: 119 KALIGYVTDLIK-GGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINPPPGLLE 175
>gi|156741645|ref|YP_001431774.1| 16S rRNA processing protein RimM [Roseiflexus castenholzii DSM
13941]
gi|209573591|sp|A7NJT6|RIMM_ROSCS RecName: Full=Ribosome maturation factor rimM
gi|156232973|gb|ABU57756.1| 16S rRNA processing protein RimM [Roseiflexus castenholzii DSM
13941]
Length = 178
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 6/173 (3%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRELRILKMYRKN-KRF 60
D+++L+ T+ GL+GE+ + S + L + V + R + ++
Sbjct: 8 DEVLLIGTVVDAFGLHGEIKVRSVTDRVDHLRHHVQTVFVGEERRPFPLQRIREPKTGVL 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I T G+ + A LR ++ + D LE DE+F L + + G G V
Sbjct: 68 ILTLGGVTDRTMAEALRGAEVTIRECD--AAPLEADEYFIHQLYGLRVVESSGAEIGIVR 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V GA ++ ++ L+P V +++ +I++ + ++
Sbjct: 126 EVLQTGANDVIVVERHGRSDTLLPMIHDVVESLDVAAGQIVVRLLPGLIDEEG 178
>gi|209573740|sp|A9WEK5|RIMM_CHLAA RecName: Full=Ribosome maturation factor rimM
Length = 174
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKN-KR 59
+D L+ + +G G+ G++ + S +++P L R+ V ++ ++Y
Sbjct: 6 MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGL 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I I + +A++LR ++Y D + EFF D+ M+ G+ G+V
Sbjct: 66 LIIQLQTITDRDAAADLRGEEVYIAAADAAPLAAD--EFFYHDVIGMQAVTDSGEDIGEV 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GAG I+ I L+P + ++ +++ E +++I PIA L+
Sbjct: 124 RDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD 174
>gi|83719306|ref|YP_442199.1| 16S rRNA-processing protein RimM [Burkholderia thailandensis E264]
gi|257138388|ref|ZP_05586650.1| 16S rRNA-processing protein RimM [Burkholderia thailandensis E264]
gi|109893005|sp|Q2SY00|RIMM_BURTA RecName: Full=Ribosome maturation factor rimM
gi|83653131|gb|ABC37194.1| 16S rRNA processing protein RimM [Burkholderia thailandensis E264]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA------NNPIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLVAHAGAGRGGDALLKARDWWLQKGGERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 SDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + + G SI+ ++ LIPF V V +I++D
Sbjct: 170 GKVADMIDNGVHSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVD 224
>gi|220905064|ref|YP_002480376.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869363|gb|ACL49698.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 168
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRI--LKMYRKNKRFIATFSG 66
M T+ HG+ GE+ ID YA++P+ L + + D R+ + + R + G
Sbjct: 1 MGTLARPHGIKGEICIDWYADSPLLLTTPLWIQAGDGEPRRVRQVAVRSHKGRPLLQLEG 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + ++ LR KL KR+ E E+DE + DL + F GK G + + +
Sbjct: 61 VVDRNAVEGLRGCKLLTKREALP--EPEDDEVYLEDLLGGDVFLPDGKRLGTL-DHFEYP 117
Query: 127 AG-SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
AG + I + L P + +L+ ++IDP L+
Sbjct: 118 AGLEMWVIMTDDNREVLFPARPEFIAGFDLEGPAVIIDPPEGLLD 162
>gi|163847612|ref|YP_001635656.1| 16S rRNA processing protein RimM [Chloroflexus aurantiacus J-10-fl]
gi|222525468|ref|YP_002569939.1| 16S rRNA processing protein RimM [Chloroflexus sp. Y-400-fl]
gi|163668901|gb|ABY35267.1| 16S rRNA processing protein RimM [Chloroflexus aurantiacus J-10-fl]
gi|222449347|gb|ACM53613.1| 16S rRNA processing protein RimM [Chloroflexus sp. Y-400-fl]
Length = 169
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKN-KR 59
+D L+ + +G G+ G++ + S +++P L R+ V ++ ++Y
Sbjct: 1 MDDLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVSRLYMHKPGL 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I I + +A++LR ++Y D + EFF D+ M+ G+ G+V
Sbjct: 61 LIIQLQTITDRDAAADLRGEEVYIAAADAAPLAAD--EFFYHDVIGMQAVTDSGEDIGEV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ GAG I+ I L+P + ++ +++ E +++I PIA L+
Sbjct: 119 RDILETGAGEIVVITRRGRPDALVPMVRDFIVAIDVGERRLVIRPIAGLLD 169
>gi|262373599|ref|ZP_06066877.1| 16S rRNA processing protein RimM [Acinetobacter junii SH205]
gi|262311352|gb|EEY92438.1| 16S rRNA processing protein RimM [Acinetobacter junii SH205]
Length = 182
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ G+++ A L ++ + ++ DE++ +DL+ + +
Sbjct: 68 LVVALKGVNDRTGAENLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ +K T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIYELFETGANDVMVVKATPDSIDAEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|254670829|emb|CBA07239.1| 16S rRNA processing protein [Neisseria meningitidis alpha153]
gi|308388777|gb|ADO31097.1| 16S rRNA processing protein [Neisseria meningitidis alpha710]
gi|319409980|emb|CBY90309.1| putative 16S rRNA processing protein RimM [Neisseria meningitidis
WUE 2594]
Length = 160
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 10 MATIGTTHGLNGEVYIDS---YANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
M I G+ G + I + Y+++ +D + L + + + N F
Sbjct: 1 MGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNSELQVKFE 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
GI++ A L + R+ F E EDE++ TDL M ++ G+V +
Sbjct: 61 GINDRDLAFSLHGYTIEIPREAFAPTE--EDEYYWTDLVGMTVVNKDHTVLGKVSNLMET 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I + LIPF + V+ I D GL+
Sbjct: 119 GANDVLMIDGEHGQ-ILIPFVSQYIETVDTGSKIITAD---WGLD 159
>gi|282854584|ref|ZP_06263919.1| 16S rRNA processing protein RimM [Propionibacterium acnes J139]
gi|282582166|gb|EFB87548.1| 16S rRNA processing protein RimM [Propionibacterium acnes J139]
gi|314923929|gb|EFS87760.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL001PA1]
gi|314966105|gb|EFT10204.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL082PA2]
gi|314981878|gb|EFT25971.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA3]
gi|315090709|gb|EFT62685.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL110PA4]
gi|315094957|gb|EFT66933.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL060PA1]
gi|315104276|gb|EFT76252.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL050PA2]
gi|327328018|gb|EGE69787.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL103PA1]
Length = 179
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 5/164 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGL G+V ++ + P V R+L +++ I F + +
Sbjct: 17 AHGLRGDVVVEVRTDEPDARFGVGATVQIEGSRRDLTVVRSRWAKGSLIVAFGEVKDRQG 76
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A ELR L + D + + EF++ L + D GK G V V + A +L
Sbjct: 77 AEELRGSVLVVDVEPNDDPDDPD-EFWDRRLRGLTVVDESGKSRGAVKDVLHMPAQDVLV 135
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
I + + L+PF V V++ +I++ I L++ +
Sbjct: 136 I-DVGGEEHLVPFVHQLVPTVDVASGQIIVSGIPGLLDSNAEEA 178
>gi|301026821|ref|ZP_07190223.1| 16S rRNA processing protein RimM [Escherichia coli MS 196-1]
gi|299879567|gb|EFI87778.1| 16S rRNA processing protein RimM [Escherichia coli MS 196-1]
gi|320183089|gb|EFW57951.1| 16S rRNA processing protein RimM [Shigella flexneri CDC 796-83]
gi|327252313|gb|EGE63985.1| 16S rRNA processing protein RimM [Escherichia coli STEC_7v]
gi|332091943|gb|EGI97021.1| 16S rRNA processing protein RimM [Shigella boydii 3594-74]
gi|332753354|gb|EGJ83734.1| 16S rRNA processing protein RimM [Shigella flexneri 4343-70]
Length = 152
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 26 DSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKL 81
S + + Y + + +++++ N+ I G+D+ +A+ L + ++
Sbjct: 2 FSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEI 61
Query: 82 YAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME--- 138
+LEE +++ DL + +G G+V + G+ +L IK ++
Sbjct: 62 VVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAF 119
Query: 139 --KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
K L+PF + +V+L I +D
Sbjct: 120 GIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 151
>gi|118602951|ref|YP_904166.1| 16S rRNA processing protein RimM [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|209573592|sp|A1AXN8|RIMM_RUTMC RecName: Full=Ribosome maturation factor rimM
gi|118567890|gb|ABL02695.1| 16S rRNA processing protein RimM [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 189
Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRF 60
DK +L+ I + G+ G V I S+ + ++ Y + + + L I++ + K
Sbjct: 26 DKRLLIGQINSLFGVQGWVKIFSHTHPRENILFYQPWHINVDANWQTLEIIQGCVQAKTI 85
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A + + A + LY K+ +L+ E++ DL +E ++ G+V
Sbjct: 86 VAQIKDVFDKEQARAYIGIDLYIKKSQLP--QLKSGEYYWDDLIGLEVINKAKIILGKVS 143
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+ ++L I E+ +P+ +++V++ IL+D
Sbjct: 144 NLVDTGSNNVLVI--NGEREHWVPYISPFLIKVDIDNQIILVD 184
>gi|293610739|ref|ZP_06693039.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827083|gb|EFF85448.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123690|gb|ADY83213.1| 16S rRNA processing protein [Acinetobacter calcoaceticus PHEA-2]
Length = 182
Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ G+ + A L ++ + ++ DE++ +DL+ + +
Sbjct: 68 LVVALKGVSDRTGAESLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVLGLDEEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G++ ++ GA ++ + T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGKIHELFETGANDVMVVHATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|311105353|ref|YP_003978206.1| 16S rRNA processing protein RimM [Achromobacter xylosoxidans A8]
gi|310760042|gb|ADP15491.1| 16S rRNA processing protein RimM [Achromobacter xylosoxidans A8]
Length = 205
Score = 140 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 34/193 (17%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVL-----------YSNDNRELRIL 51
L+ + I +G+ G V + ++ N L +++ L ++ +++
Sbjct: 13 DLIELGRISAAYGVKGWVKVQPHSANAEVLLSASQWWLTRPVPELARGVVASAPVAYKVV 72
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD- 110
+ + +A +GI + A LR + A R F E EDE++ DL +
Sbjct: 73 QARSQGATVVAQLAGIADRDQAEALRGCSVQAPRGSFPAPE--EDEYYWVDLIGCALYTS 130
Query: 111 RQGKY--WGQVCGVYNFGAGSILEI---------------KNTMEKTFLIPFTKFAVLEV 153
G+ G V V + GA ++L + L+PF + + V
Sbjct: 131 ATGEPALLGVVDEVLDNGAHAVLRVLRQRVGAEGPEPILNAKGRPAEMLVPFVRAHIHAV 190
Query: 154 NLQENKILIDPIA 166
+L +I D A
Sbjct: 191 DLSARRIDSDWPA 203
>gi|72383019|ref|YP_292374.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
NATL2A]
gi|109893031|sp|Q46IK7|RIMM_PROMT RecName: Full=Ribosome maturation factor rimM
gi|72002869|gb|AAZ58671.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str.
NATL2A]
Length = 176
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSND---NRELRILKM 53
M + DK + + I GL G++ I ++ P R++ +++ +L K+
Sbjct: 1 MFEKDKWMTIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKL 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQ 112
++ + G+ SA E+ KL L +DE+ DL +E
Sbjct: 61 IPGKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPM--LSKDEYHYHDLIGLEARRGPS 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + G +LEI+ K L+PF K V E+ ++E +LI+P L
Sbjct: 119 KALIGYVTDLIK-GGNDLLEIELVEGKKVLVPFVKEIVPEIEIKEKWLLINPPPGLLE 175
>gi|328952471|ref|YP_004369805.1| Ribosome maturation factor rimM [Desulfobacca acetoxidans DSM
11109]
gi|328452795|gb|AEB08624.1| Ribosome maturation factor rimM [Desulfobacca acetoxidans DSM
11109]
Length = 176
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 1 MVKLD----KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK 56
M K+ +L+ + + HG+ GE+ + + ++ L+ R+ +
Sbjct: 1 MSKVSASTPRLICLGRVIGVHGIRGEIKVQAEIDDLATLDAVAELWIGGALYRLAEGRFH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
+ + G+ A EL + +R L E++ ++ + + G Y
Sbjct: 61 KRHLLLRVEGVQTRQQAEELVGEPVLVERSCLPA--LPAWEYYWFEILGLMVYRADNGGY 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V + A I ++ E LIP + ++L E ++L+
Sbjct: 119 LGKVAAIVPTPAHDIYVVQ-KHESELLIPAVAEVIQAIDLTEGRLLV 164
>gi|262380410|ref|ZP_06073564.1| 16S rRNA processing protein RimM [Acinetobacter radioresistens
SH164]
gi|262297856|gb|EEY85771.1| 16S rRNA processing protein RimM [Acinetobacter radioresistens
SH164]
Length = 182
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNIFDYLPWYIETKAGWQIVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + +A L ++ + + DE++ +DL+ + +
Sbjct: 68 LVVSLKGVSDRTAADNLVGANIWISKSQLPQPGV--DEYYWSDLKGLTVLGLDEEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVMVVRATTDSVDGEERMIPWHKDVVQRVDLETGRIYVN 177
>gi|282882985|ref|ZP_06291589.1| 16S rRNA processing protein RimM [Peptoniphilus lacrimalis 315-B]
gi|281297192|gb|EFA89684.1| 16S rRNA processing protein RimM [Peptoniphilus lacrimalis 315-B]
Length = 166
Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNK 58
M + L + I T G+ GE+ + + +N ++ Y+L + I +
Sbjct: 1 MKSKNDLTCIGEIINTFGIKGELKVRPFTDNIKRYSKLDYILLGQNKDSYEISSVRYDKG 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
G D+I+ + ++ LY D E+L + F+ DL E ++ ++ G
Sbjct: 61 FVFLKLKGHDDINDVLKFKNSYLYIY--DKDREKLPQGTFYVWDLIGKEVYNSNNEFLGI 118
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + ++ A + IKN + IP K V ++ + I+ DPI
Sbjct: 119 LEKIDSYPANDVFVIKNENFH-YYIPNVKEFVKDI---GDVIIADPIEGM 164
>gi|121610858|ref|YP_998665.1| 16S rRNA-processing protein RimM [Verminephrobacter eiseniae
EF01-2]
gi|209573627|sp|A1WPU0|RIMM_VEREI RecName: Full=Ribosome maturation factor rimM
gi|121555498|gb|ABM59647.1| 16S rRNA processing protein RimM [Verminephrobacter eiseniae
EF01-2]
Length = 192
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 16/174 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYS--------NDNRELRILK 52
+ + I GL G + Y+ +P L R+ L L I +
Sbjct: 16 PSDAIEVGRIADAWGLQGWFKVQPYSADPEALFSCKRWYLQPAARGAKAFGGTVLLPIRQ 75
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+A ID+ ++A LR +++ R F E++ DL ++ +RQ
Sbjct: 76 AKDHGGMVLAWAQDIDDRNTAEALRGARIFVPRSSFPSPPP--GEYYWVDLIGLQVINRQ 133
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTF---LIPFTKFAVLEVNLQENKILID 163
G GQV + GA ++L + + + +IPF V +V L + +I++D
Sbjct: 134 GLALGQVRELRATGAQTLLVLAHEQDGKAGKRMIPFVPAFVDQVELPQKRIIVD 187
>gi|304440223|ref|ZP_07400113.1| 16S rRNA processing protein RimM [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371272|gb|EFM24888.1| 16S rRNA processing protein RimM [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 164
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 4/167 (2%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+K D+L+ + I THG+ G + + ++ D+ ++ I N
Sbjct: 1 MKTDQLI-IGKILNTHGIKGTIKVQPITSDINRFKSLNYIILDDLKIEISNRRISNNLVY 59
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D+I+ + +Y D L+E E+F + + +D + G V
Sbjct: 60 LDLKGYDDINKVLPFKGKYIYILEDD--RINLKEGEYFQYQVIGLNCYDAENNLLGTVKS 117
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ ILEI++ +PF ++ V+L++ I+++PI
Sbjct: 118 ILENPVHDILEIEDECNTVHYVPFIDNFIVSVDLEKG-IILNPIEGM 163
>gi|94270959|ref|ZP_01291860.1| 16S rRNA processing protein RimM [delta proteobacterium MLMS-1]
gi|93450603|gb|EAT01724.1| 16S rRNA processing protein RimM [delta proteobacterium MLMS-1]
Length = 184
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 10/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRE----LRILKMYRKNKR 59
D L+ + + G+ GE+ I Y+ P D Y L+ D +L
Sbjct: 12 DDLLAVGRVVKPQGIKGEIKIVPYSGRPADFREYHRLWPADGEAPGGGWELLATRESGGA 71
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA +GI + +A LR L + +D E + L+ + D QG+ G V
Sbjct: 72 VIARLAGIADRDAAEALRGRPLAIRSRDLPPA--PAGELYWHQLQGLPARDEQGREIGTV 129
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK---ILIDPIAAGLN 170
G+ A + I + + L+P + + +L+ P L
Sbjct: 130 VGLLATPARPTMVIADGAGREILVPVHAEFMQYQPAAVGRAAFVLLTPPPGLLE 183
>gi|294791383|ref|ZP_06756540.1| 16S rRNA processing protein RimM [Scardovia inopinata F0304]
gi|294457854|gb|EFG26208.1| 16S rRNA processing protein RimM [Scardovia inopinata F0304]
Length = 221
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 41/210 (19%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKR 59
+ D L+ + IG GL GEV I + ++P+ + +L N + + + R
Sbjct: 10 TEADGLLRVCRIGRAQGLKGEVNIQVFTDSPVLRFQPGSILLDNQGKSWTVERSRTFKNR 69
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-----------------------FKDEELEED 96
+I G+D+ +++ EL+ + LY + +DE+ E+
Sbjct: 70 WIIKLEGVDDRNASEELKGMILYVPAPETSTDKAKSSADSDVPPVPPDAAPAQDEQTGEE 129
Query: 97 EFFNTDLEEMETF-----------DRQGK---YWGQVCGVYNFGAGSILEIK--NTMEKT 140
++ +L +E D G G V V ++ +K + K
Sbjct: 130 GWYPQELIGLEVLAVDDHESALAADYDGVDAHVIGHVSEVDLNNPQPLITVKLVDAGGKE 189
Query: 141 FLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
LIPF + V V+ E IL+DP L+
Sbjct: 190 ALIPFVEALVPIVDPDEGYILVDPPGGLLD 219
>gi|262280311|ref|ZP_06058095.1| 16S rRNA processing protein RimM [Acinetobacter calcoaceticus
RUH2202]
gi|262258089|gb|EEY76823.1| 16S rRNA processing protein RimM [Acinetobacter calcoaceticus
RUH2202]
Length = 182
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ G+ + A L ++ + ++ DE++ +DL+ + +
Sbjct: 68 LVVALKGVSDRTGAENLVGANIWVAKSQLPKADV--DEYYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G++ ++ GA ++ + T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGKIHELFETGANDVMVVHATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|171057373|ref|YP_001789722.1| 16S rRNA-processing protein RimM [Leptothrix cholodnii SP-6]
gi|209573565|sp|B1Y0H6|RIMM_LEPCP RecName: Full=Ribosome maturation factor rimM
gi|170774818|gb|ACB32957.1| 16S rRNA processing protein RimM [Leptothrix cholodnii SP-6]
Length = 194
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 27/187 (14%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRE-----------LRIL 51
+V +A + G+ G + YA + + R+ L DNR L +
Sbjct: 12 DVVEVAKVIDAWGVKGWFRVHPYAADAQAVFTSRRWYLQGPDNRPRPKDAPALPRLLHVT 71
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
++ +A + + +A L+ +++ R F + E++ DL + +R
Sbjct: 72 EVKEHGDGIVACAPEVADRSAAEALKGARIFVSRASFPTV--GDGEYYWIDLIGLSVVNR 129
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTM--------EKTFLIPFTKFAVLEVNLQENKILID 163
G+ G V + + G S+L + E LIPF + V L + +I+ D
Sbjct: 130 DGESLGTVTDLIDTGPHSVLRLGYPSVDDKGAPVEGERLIPFVAAYIDSVQLDQKRIVAD 189
Query: 164 PIAAGLN 170
GL+
Sbjct: 190 ---WGLD 193
>gi|169632273|ref|YP_001706009.1| 16S rRNA processing protein [Acinetobacter baumannii SDF]
gi|169794512|ref|YP_001712305.1| 16S rRNA processing protein [Acinetobacter baumannii AYE]
gi|184159680|ref|YP_001848019.1| 16S rRNA-processing protein RimM [Acinetobacter baumannii ACICU]
gi|213158916|ref|YP_002320914.1| 16S rRNA processing protein RimM [Acinetobacter baumannii AB0057]
gi|215482100|ref|YP_002324282.1| 16S rRNA processing protein RimM [Acinetobacter baumannii
AB307-0294]
gi|239501935|ref|ZP_04661245.1| 16S rRNA processing protein RimM [Acinetobacter baumannii AB900]
gi|260556946|ref|ZP_05829163.1| 16S rRNA processing protein RimM [Acinetobacter baumannii ATCC
19606]
gi|301344867|ref|ZP_07225608.1| 16S rRNA-processing protein RimM [Acinetobacter baumannii AB056]
gi|301511146|ref|ZP_07236383.1| 16S rRNA-processing protein RimM [Acinetobacter baumannii AB058]
gi|301596523|ref|ZP_07241531.1| 16S rRNA-processing protein RimM [Acinetobacter baumannii AB059]
gi|332851324|ref|ZP_08433376.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6013150]
gi|332868735|ref|ZP_08438358.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6013113]
gi|332873805|ref|ZP_08441747.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6014059]
gi|169147439|emb|CAM85300.1| 16S rRNA processing protein [Acinetobacter baumannii AYE]
gi|169151065|emb|CAO99721.1| 16S rRNA processing protein [Acinetobacter baumannii]
gi|183211274|gb|ACC58672.1| RimM protein, required for 16S rRNA processing [Acinetobacter
baumannii ACICU]
gi|193078540|gb|ABO13560.2| 16S rRNA processing protein [Acinetobacter baumannii ATCC 17978]
gi|213058076|gb|ACJ42978.1| 16S rRNA processing protein RimM [Acinetobacter baumannii AB0057]
gi|213986440|gb|ACJ56739.1| 16S rRNA processing protein RimM [Acinetobacter baumannii
AB307-0294]
gi|260409552|gb|EEX02853.1| 16S rRNA processing protein RimM [Acinetobacter baumannii ATCC
19606]
gi|322509591|gb|ADX05045.1| rimM [Acinetobacter baumannii 1656-2]
gi|323519611|gb|ADX93992.1| 16S rRNA-processing protein RimM [Acinetobacter baumannii
TCDC-AB0715]
gi|332730040|gb|EGJ61368.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6013150]
gi|332733164|gb|EGJ64361.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6013113]
gi|332738028|gb|EGJ68913.1| 16S rRNA processing protein RimM [Acinetobacter baumannii 6014059]
Length = 182
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF----DRQGKY 115
+ G+ + A L ++ + ++ DE++ +DL+ + D Q
Sbjct: 68 LVVALKGVSDRTGAESLVGANIWIAKSQLPKADV--DEYYWSDLKGLTVLGLDDDEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|258406143|ref|YP_003198885.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
gi|257798370|gb|ACV69307.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
Length = 182
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-----LYSNDNRELRILKMYR 55
M K+ +LV + I GL GEV ++ +A+ P + +L
Sbjct: 1 MGKI-RLVPIGRIAKPLGLRGEVCLEPHADFPFVFASLERIYLQFERRRPKPYAVLSHRV 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + GI+ +A +R ++ A+ +D E ++ DL G +
Sbjct: 60 HKGRDVLLLHGIEGRDAAESIRGREVLARARDLP--EPDDAVLLRQDLPGCRVELEDGAW 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V V + A + I + L P + VL+V+L+ ++I P L+
Sbjct: 118 VGEVLEVQDNRAQDVWVILGPQGQEILFPVCEAFVLDVDLERRVVVIRPPEGLLD 172
>gi|325981448|ref|YP_004293850.1| ribosome maturation factor rimM [Nitrosomonas sp. AL212]
gi|325530967|gb|ADZ25688.1| Ribosome maturation factor rimM [Nitrosomonas sp. AL212]
Length = 167
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 12/164 (7%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKRFIATF 64
M I +G++G + I+ Y + L Y + + ++ ++ + +
Sbjct: 1 MGHIIGPYGVHGWIKINPYTEHLDGLMEYPQWWLGDEKAEWNKVHVVNGHIYGTTLLVKL 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEE---DEFFNTDLEEMETFDRQGKYWGQVCG 121
+ A++L+ +++ R D L E D ++ TDL + + +G+ G V G
Sbjct: 61 KEYSDRTQATKLKGIQIAIPRDWLPD--LPENGVDGYYWTDLINAKVLNLKGEKLGTVVG 118
Query: 122 VYNFGAGSILEIK--NTMEKTFLIPFTKFAVLEVNLQENKILID 163
++ GA +L I + +K LIP V++V+L+ +I++D
Sbjct: 119 LFETGANDVLRIVKMDQEKKEILIPCISQYVMKVDLKNAQIIVD 162
>gi|254417637|ref|ZP_05031371.1| 16S rRNA processing protein RimM [Microcoleus chthonoplastes PCC
7420]
gi|196175555|gb|EDX70585.1| 16S rRNA processing protein RimM [Microcoleus chthonoplastes PCC
7420]
Length = 203
Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 41/203 (20%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRK 56
D + + I GL GE+ + ++ P R++ S D++ + +
Sbjct: 4 DDWLEIGRIVAPQGLKGELRVYPNSDFPERFEKSGQRWLKQSVDSQPQPVELLGGRYVPG 63
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
++ +G++N A LRD L D EL E+E+ D+ ++E F++ G+
Sbjct: 64 KGIYVVKLAGVENREQAEALRDATLLVPESDRP--ELGENEYHVLDVLDLEVFNQLTGEA 121
Query: 116 WGQVCGVYNFGAGSILEI-----------------------------KNTMEKTFLIPFT 146
G V V G +LE+ K + T LIPF
Sbjct: 122 VGIVVNVIPAG-NMLLEVKLHHQPEPTPAKPEAPLPNRISKQRKARKKPSKPVTVLIPFV 180
Query: 147 KFAVLEVNLQENKILIDPIAAGL 169
V V+L+ +I I P L
Sbjct: 181 DEIVPVVDLENGRIEITPPQGLL 203
>gi|172036717|ref|YP_001803218.1| 16S rRNA-processing protein RimM [Cyanothece sp. ATCC 51142]
gi|209573575|sp|B1WZK0|RIMM_CYAA5 RecName: Full=Ribosome maturation factor rimM
gi|171698171|gb|ACB51152.1| rRNA processing protein [Cyanothece sp. ATCC 51142]
Length = 191
Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRIL----KMYRK 56
++ + + TI + GL GE+ + S + P R++ +D I K
Sbjct: 6 NQWLEIGTIVSARGLKGELKVLSSTDFPERFEIPGKRWLQPPHDPYPQAIELISGKSVAG 65
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
+I GI+N + A LR KL D + ELEE+E+ + L ++ + G+
Sbjct: 66 KNIYIVRLEGIENRNQAETLRGYKLLIM--DQELPELEEEEYHVSQLINVQVYHHKTGEL 123
Query: 116 WGQVCGVYNFGAGSILEI----------KNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G V ++ G +LEI K T E+ LIPF V V+L+ N+I I+P
Sbjct: 124 LGTVIDLFTTG-HDLLEIQLINNSEREAKKTKERKVLIPFVYEIVPVVDLENNRIEINPP 182
Query: 166 AAGL 169
L
Sbjct: 183 KGLL 186
>gi|83313163|ref|YP_423427.1| 16S rRNA-processing protein RimM [Magnetospirillum magneticum
AMB-1]
gi|109893022|sp|Q2VZV7|RIMM_MAGMM RecName: Full=Ribosome maturation factor rimM
gi|82948004|dbj|BAE52868.1| RimM protein, required for 16S rRNA processing [Magnetospirillum
magneticum AMB-1]
Length = 176
Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 23 VYIDSYANNPIDLNRYVLYSNDNR--ELRILKMYRKNKRFIATFSGIDNIHSASELRDLK 80
V I S+ +P D+ Y N+ + R+ IAT GI + +A L+ +
Sbjct: 20 VRIKSFTEDPADIGFYSPVENEAGSIKYRLKVTGEVKGLVIATLDGIGDRDAAEALKGTE 79
Query: 81 LYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT 140
L+ R+ L EDEF +DL + GK G V V ++GAG +L+IK +
Sbjct: 80 LWVARERLPR--LAEDEFLYSDLIGLVAEGVDGKRLGIVKAVADYGAGDVLDIKLEPKGD 137
Query: 141 FLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
++PFT+ +V EV++ ++++ P + K+
Sbjct: 138 MMVPFTQASVPEVDIAGGRLVVVPPVYAPDENEEKS 173
>gi|284050805|ref|ZP_06381015.1| 16S rRNA-processing protein RimM [Arthrospira platensis str.
Paraca]
gi|291567884|dbj|BAI90156.1| probable 16S rRNA processing protein [Arthrospira platensis
NIES-39]
Length = 212
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 48/215 (22%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYV--LYSNDNRELRILKMYRKN 57
+ + + I GL+G++ + ++ P R++ N+ + +L
Sbjct: 1 MSDWIEIGKIVAAQGLDGQMRVYPNSDFPERFIEPGTRWLQKPGQNEPSPVELLGGRFIP 60
Query: 58 KRFIATFS--GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK- 114
+ + G++ A LRD +L+ + D LE++EF+ DL +E F++ +
Sbjct: 61 GKGLYAIEMVGVETREEAEALRDSRLFIQEGDRPY--LEDNEFYVLDLIGLEVFNQDTQD 118
Query: 115 YWGQVCGVYNFGAGSILEI------------------------------------KNTME 138
G V V G +LE+ K
Sbjct: 119 IIGTVIDVIPAG-NDLLEVQLNFTPTSEDLAADTQRQAKLQNIPKNKRRKRHFQTKANQP 177
Query: 139 KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
KT LIPF K V V+LQ ++ I P + + T
Sbjct: 178 KTLLIPFVKEIVPVVDLQNRRLEITPPQGLIESQT 212
>gi|237813271|ref|YP_002897722.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei
MSHR346]
gi|237506541|gb|ACQ98859.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei
MSHR346]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA------NNPIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLATHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 224
>gi|283768299|ref|ZP_06341211.1| 16S rRNA processing protein RimM [Bulleidia extructa W1219]
gi|283104691|gb|EFC06063.1| 16S rRNA processing protein RimM [Bulleidia extructa W1219]
Length = 165
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKNKRFIAT 63
K + + I THG+ GE+ + S + P + LY +D +EL I + + ++
Sbjct: 2 KKIQVGWIQNTHGIKGELKVRSETDFPNIHFKKGKKLYLDDQKELLISSSRLQKEMYLLQ 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F G +I+ + + LY + D L++ E++ L + +G G + V
Sbjct: 62 FVGYQDINLVQDWKGKGLYIDQND--QVHLKKGEYYRHQLIGLSVISEKGSLVGTILAVE 119
Query: 124 NF-GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
GA + L ++ +K L PF + V+ +E K+ ++
Sbjct: 120 ETLGAQNNLRVET-EKKEVLYPFIPSFIDRVDQEERKVYVN 159
>gi|193216160|ref|YP_001997359.1| 16S rRNA processing protein RimM [Chloroherpeton thalassium ATCC
35110]
gi|193089637|gb|ACF14912.1| 16S rRNA processing protein RimM [Chloroherpeton thalassium ATCC
35110]
Length = 168
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSN--DNRELRILKMYRKNKRF 60
L ++ I + GL GEV + + P Y L D ++++L
Sbjct: 2 NLFVVGEILKSRGLKGEVKVRVITDFPESFLERKSYYLGKTERDAHKVQVLAAKIHKGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEF-FNTDLEEMETFDRQGKYWGQV 119
G+D++ SA L+ L+ + + F + +L + D K G++
Sbjct: 62 FLLLDGVDSVESADLLKGQFLFVDESQLMRVKGD---FAYLHELIGLAVLDENEKLLGRL 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ + + + EI+ ++ LIP +++V+++ ++ + L
Sbjct: 119 VDLQHMPSCDVYEIETADKQKVLIPAIDDFIVKVDVENKRVTVRRFEEFL 168
>gi|85374321|ref|YP_458383.1| 16S rRNA processing protein [Erythrobacter litoralis HTCC2594]
gi|122544281|sp|Q2N9Q5|RIMM_ERYLH RecName: Full=Ribosome maturation factor rimM
gi|84787404|gb|ABC63586.1| 16S rRNA processing protein [Erythrobacter litoralis HTCC2594]
Length = 169
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A I HG+ G+V + L + ++ L+ ++ IA F+ +
Sbjct: 7 LTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRS-DNKGGAIARFAEV 65
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
A +LR L R+ LEE E++ DL ++ GK G+V V+N+GA
Sbjct: 66 QGREQAEKLRGTTLTVPREALP--PLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHNYGA 123
Query: 128 GSILEIKNT-----MEKTFLIPFTKFAVLEVNLQENKILI 162
I+EI KTF++P T AV+E N +I+I
Sbjct: 124 TDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWN--GERIVI 161
>gi|85708913|ref|ZP_01039979.1| 16S rRNA processing protein [Erythrobacter sp. NAP1]
gi|85690447|gb|EAQ30450.1| 16S rRNA processing protein [Erythrobacter sp. NAP1]
Length = 175
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
LV +A I HG+ GEV + L ++ ++ L+ ++ IA F+
Sbjct: 13 LVELAAITGAHGVAGEVRLKLLGEGLDALRQHKSFNGGALTLKKVRS-DNKGGAIARFAE 71
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ A LR L +R+ ELEE E+++ DL + G G+V V NFG
Sbjct: 72 VQGRGEAERLRGTVLTVQREALP--ELEEGEYYHADLIGLAVETDAGNAIGKVTAVQNFG 129
Query: 127 AGSILEIKNTME-----KTFLIPFTKFAVLEVNLQENKILI 162
A I+EI K ++P TK AV+E + +++I
Sbjct: 130 ATDIIEIALDPPPEKGLKAIMVPMTKAAVIEWD--AQRLVI 168
>gi|209526252|ref|ZP_03274782.1| 16S rRNA processing protein RimM [Arthrospira maxima CS-328]
gi|209493349|gb|EDZ93674.1| 16S rRNA processing protein RimM [Arthrospira maxima CS-328]
Length = 212
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 48/215 (22%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYV--LYSNDNRELRILKMYRKN 57
+ + + I GL+GE+ + ++ P R++ N+ + +L
Sbjct: 1 MSDWIEIGKIVAAQGLDGEMRVYPNSDFPERFIEPGTRWLQKPGQNEPSPVELLGGRFIP 60
Query: 58 KRFIATFS--GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G++ A LRD +L+ + L+++EF+ DL +E F++ +
Sbjct: 61 GKGLYAIEMVGVETREQAEALRDSRLFIQYGARP--HLDDNEFYVLDLIGLEVFNQDTQD 118
Query: 116 -WGQVCGVYNFGAGSILEI------------------------------------KNTME 138
G V V G +LE+ K
Sbjct: 119 MIGTVIDVIPAG-NDLLEVQLNFTPTEEDLATDTERQAKLEKIPQNKRRKRHFQTKAKQP 177
Query: 139 KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
KT LIPF K V V+L+ ++ I P + + T
Sbjct: 178 KTVLIPFVKDIVPVVDLENRRLEITPPQGLIESQT 212
>gi|115377061|ref|ZP_01464277.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
gi|115365900|gb|EAU64919.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
Length = 163
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 14 GTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKNKRFIATFSGI 67
HG+ GE+ I ++ P + V + + R LRI + K I G+
Sbjct: 2 ARAHGIRGEIAIRTFEXRPRRRSMVVERLSVRTRAGEERVLRIEDVRPTPKENIVALEGV 61
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
D +A L ++A R+D + + E EFF DL + D G+ G V ++N G
Sbjct: 62 DTREAAEALVGAAVFAYREDLEPPQ--EGEFFQGDLVGLTAVDEAGQALGTVEEIWNTGE 119
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
L I++ + ++PF V V+L + KI+I P+
Sbjct: 120 VPNLVIRSAGQAELIVPFADEFVPSVDLPQGKIVIRPL 157
>gi|262377089|ref|ZP_06070315.1| 16S rRNA processing protein RimM [Acinetobacter lwoffii SH145]
gi|262308127|gb|EEY89264.1| 16S rRNA processing protein RimM [Acinetobacter lwoffii SH145]
Length = 182
Score = 138 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNIFDYLPWYIETKAGWQIVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + A EL ++ + + DE++ +DL+ + +
Sbjct: 68 LVVSLKGVSDRTGADELVGSNVWISKSQLPQAGV--DEYYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA ++ ++ T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGQIFELFETGANDVMVVRATADSIDGEERMIPWHKDVVQRVDLEAGRIYVN 177
>gi|119478675|ref|ZP_01618565.1| 16S rRNA-processing protein [marine gamma proteobacterium HTCC2143]
gi|119448401|gb|EAW29653.1| 16S rRNA-processing protein [marine gamma proteobacterium HTCC2143]
Length = 198
Score = 138 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 33/196 (16%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---------SNDNRELRIL 51
MV +LV++ I +G+ G V + S+ + ++ Y Y + L
Sbjct: 2 MVDSSELVVIGKITAVYGVKGWVKVHSFTDPMENILGYQSYYLSGGNKGTGESWQSLSFD 61
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
++ K +A G+ + A + + EL+ D+F+ DL ++ F
Sbjct: 62 EVKYHGKGLVALIEGVSDREVARGYCQRDIAIPISEMP--ELDTDDFYWRDLIGLKVFSV 119
Query: 112 Q-----------------GKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFT-KFA 149
G G V + GA +L +K + LIP+
Sbjct: 120 NIADEHDADTEQIDPVGHGVLLGAVHQMMETGANDVLAVKQCDGSIDDQERLIPWLPDQV 179
Query: 150 VLEVNLQENKILIDPI 165
V V+++ I +D
Sbjct: 180 VKHVDIEAGFIQVDWP 195
>gi|166364114|ref|YP_001656387.1| 16S rRNA processing protein RimM-like protein [Microcystis
aeruginosa NIES-843]
gi|209573583|sp|B0JU07|RIMM_MICAN RecName: Full=Ribosome maturation factor rimM
gi|166086487|dbj|BAG01195.1| 16S rRNA processing protein RimM homolog [Microcystis aeruginosa
NIES-843]
Length = 192
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 26/189 (13%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN------RELRILKMY--RK 56
+ + + TI GL GE+ + S ++ P + + RE+ +L+
Sbjct: 3 ENWLEIGTIVAPQGLEGELRVLSVSDFPERFQKRGMRGIQGPQGGEIREITLLRGRELPG 62
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
++ G++N A LR KL+A + + L+ DE+ ++L +E + G+
Sbjct: 63 KNVYVIKLEGVENREQAEALRGYKLWANK--LEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 116 WGQVCGVYNFGAGSILEIK--------------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G V ++ G IL ++ + E L+PF K V V+L+ +I
Sbjct: 121 IGVVVDIFWAG-NDILAVQLEANLASVKKKSPSSDSEARALVPFVKEIVPLVDLKAARIE 179
Query: 162 IDPIAAGLN 170
I P L
Sbjct: 180 IAPPPGLLE 188
>gi|254481918|ref|ZP_05095161.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2148]
gi|214038047|gb|EEB78711.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2148]
Length = 183
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 17/174 (9%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL----KMYRKNKRF 60
+ I +G+ G V I S+ + +L R+ + R + + K
Sbjct: 6 SNPLTAGKITGCYGIKGWVKIHSFTDPAENLFRFGKWMLQRRGALVAVEFDHWKPQGKGM 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF------DRQGK 114
+A +G+D+ A + L++ + LEE EF+ L+ ++ +
Sbjct: 66 VAHIAGVDDRDLAESYKGLQIVVEADSLP--PLEEGEFYWRQLQGLQAWGREPDSGDDRV 123
Query: 115 YWGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTK-FAVLEVNLQENKILID 163
G V + GA +L +K T +K LIP+ V V+L+E I ID
Sbjct: 124 LLGTVDYLIETGANDVLVLKATGDSIDDKERLIPYLPGDTVSRVDLEEAVIDID 177
>gi|113953430|ref|YP_729432.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9311]
gi|123132772|sp|Q0IDP0|RIMM_SYNS3 RecName: Full=Ribosome maturation factor rimM
gi|113880781|gb|ABI45739.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9311]
Length = 187
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSND-NRELRILKMYRK 56
+ + + T+ GL GE+ ++ ++ P R++ +E+ +L+ +
Sbjct: 13 NSTNDWLPVGTLVGAQGLKGELRLNPASDFPERFTEPGTRWLQAKGSAPKEVELLEGRQL 72
Query: 57 NKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QG 113
+ ++ G++N SA L + +D EL E EF DL +E
Sbjct: 73 PGKSLYVVRLKGVNNRASAEALVGCTVLVPAKDRP--ELAEGEFHLLDLVGLEARLAGSD 130
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ G V + + G +LEIK KT L+PF + V +V L+E
Sbjct: 131 EPIGTVSNLIS-GGNDLLEIKLNSGKTVLVPFVEAIVPDVQLEEG 174
>gi|222151071|ref|YP_002560225.1| 16S rRNA processing protein homolog [Macrococcus caseolyticus
JCSC5402]
gi|254797754|sp|B9EBB8|RIMM_MACCJ RecName: Full=Ribosome maturation factor rimM
gi|222120194|dbj|BAH17529.1| 16S rRNA processing protein homolog [Macrococcus caseolyticus
JCSC5402]
Length = 165
Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRFIATF 64
+ I THG+ GEV I + ++ + + + + N+ L I + F
Sbjct: 5 VGKIVNTHGVKGEVKILTASDFAAERFKPGKVLMIPFKNERVTLTIKSYRTHKNFHMLAF 64
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G++NI+ + + L +Y + ++ +D L+E+E+F +D+ FD + + G V ++
Sbjct: 65 EGLNNINDVEKYKGLDVYQEIEN-EDIILDENEYFYSDIIGCTVFDGE-REIGIVNDIFE 122
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GA + ++ +K +LIP+ + V +++ KI+I+ I L
Sbjct: 123 TGANDVWVVQ--GDKEYLIPYIEDVVKSIDIDNKKIIIEAIEGLL 165
>gi|224370182|ref|YP_002604346.1| RimM [Desulfobacterium autotrophicum HRM2]
gi|223692899|gb|ACN16182.1| RimM [Desulfobacterium autotrophicum HRM2]
Length = 172
Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 4 LDK-LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRE---LRILKMYRKN 57
++K L + + HGL G + + S+A + + + + ILK
Sbjct: 1 MEKTLFTLGVVTGVHGLKGFLKVRSFAGSLETFKSGLEMVVRRSGKADECYTILKASPHK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + FSG+ + +A +L R+ E E+D +F DL ++ DR + G
Sbjct: 61 KGILMQFSGV-DRDAAETFVGAELLVDRRLLP--EPEDDAYFWEDLIGLKVTDRTLGFLG 117
Query: 118 QVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + G+ + +KN + K FLIP V+ V+L+ ++ +D
Sbjct: 118 TIDSIMETGSNDVFVVKNKDKGLKNKEFLIPGLASVVIGVDLERGEMTVDLPEGL 172
>gi|212703529|ref|ZP_03311657.1| hypothetical protein DESPIG_01574 [Desulfovibrio piger ATCC 29098]
gi|212673029|gb|EEB33512.1| hypothetical protein DESPIG_01574 [Desulfovibrio piger ATCC 29098]
Length = 171
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 7/165 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDL-NRYVLYSND--NRELRILKMYRKNKRFIATFSG 66
M T+ HG+ GE+ +D YA++P L + L + D R R R + G
Sbjct: 1 MGTLARPHGIKGEICVDWYADSPSLLDGPFWLQAGDAPPRPARARSWRMHKGRPLLLLEG 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + + LR K+ R +EDE + D+ G G V +
Sbjct: 61 VTDRNDIEALRGQKILVDRDLLPPV--DEDEVYVEDVLGFAVILPDGSRLG-VLDHVEYP 117
Query: 127 AG-SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
AG + I K L P + +L+ +I I P L+
Sbjct: 118 AGLEVWSIVTDDGKEVLFPAEASFIEGFDLEGERIHIAPPEGLLD 162
>gi|159470193|ref|XP_001693244.1| RimM-like protein [Chlamydomonas reinhardtii]
gi|158277502|gb|EDP03270.1| RimM-like protein [Chlamydomonas reinhardtii]
Length = 181
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 14/177 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKNKR- 59
V + + HG+ GE+ ++ + P + + D L++ + K
Sbjct: 5 YVEVGRVTGAHGVRGELRVEPSTDQPAKRFKAGSKPCWRPSWPDVGVLKMRAVRPLGKGE 64
Query: 60 --FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYW 116
++ + + A +LR LY D + + DEF+ TD+ D+ G+
Sbjct: 65 EAWLVALDEVGSRTQAEQLRGHLLYVAASDREALR-DPDEFYVTDIIGCSVLDQASGRLV 123
Query: 117 GQVCGVYNF-GAGSILE--IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GQV V++ G L I N+ + +IPF K ++L+ + + P L+
Sbjct: 124 GQVVDVFSGMGTHDTLRADIMNSRIRYCMIPFAKAICPVLDLKSRTLEVAPPEGLLD 180
>gi|257454504|ref|ZP_05619762.1| 16S rRNA processing protein RimM [Enhydrobacter aerosaccus SK60]
gi|257448066|gb|EEV23051.1| 16S rRNA processing protein RimM [Enhydrobacter aerosaccus SK60]
Length = 185
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIA 62
L + + +G++G +++ S+ + + + + + L + ++ K ++
Sbjct: 17 LFKIGELKKPYGIHGWLWVFSFTEDREAIFDMQPWVINTAMGQKTLTVKNWRQQGKGYVV 76
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWGQVCG 121
+ + + + A + + L+A++ + EL E+E++ +DL + + + G+V
Sbjct: 77 QLNEVPDRNIAETMFSVSLWAEKNNL--SELAENEYYWSDLIGLTVISQSENVILGRVKE 134
Query: 122 VYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
++ GA +I+ ++ T + LIP+ K V EVNL E +++D
Sbjct: 135 LFETGAHAIMVVEPTADSVDGEERLIPWHKQTVGEVNLTEQTLMVD 180
>gi|117923819|ref|YP_864436.1| 16S rRNA processing protein RimM [Magnetococcus sp. MC-1]
gi|166226449|sp|A0L4Y7|RIMM_MAGSM RecName: Full=Ribosome maturation factor rimM
gi|117607575|gb|ABK43030.1| 16S rRNA processing protein RimM [Magnetococcus sp. MC-1]
Length = 177
Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 9/177 (5%)
Query: 1 MVKLDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY------SNDNRELRILK 52
M ++ V + + GL GE+ + S P + + ++ +E+R+
Sbjct: 1 MSGTEEIRWVTLGYVMGAFGLKGEMRVRSLTERPDGIFDHPVWWLFNPKQKTRQEMRLGS 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFF-NTDLEEMETFDR 111
K +AT +G+ + L ++ R D + DL + +
Sbjct: 61 GRLHGKGVVATLAGVTTREAVQALFGTEIQVPRSMLPDGGDDPGVDGIWADLIGCQVVEV 120
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G G+V + GA +L ++ E L+P+ + V+E++L I + +
Sbjct: 121 DGTELGRVVEMMATGANDVLIVRGGPEGEKLLPYIEEVVVELDLDRQIIKVKLMEGM 177
>gi|319441359|ref|ZP_07990515.1| 16S rRNA-processing protein RimM [Corynebacterium variabile DSM
44702]
Length = 205
Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 45/204 (22%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----------------SNDNRELRIL 51
+ + + HG+ GE+ +D+ ++P S L +
Sbjct: 4 LQIGRVIKPHGVRGELVVDATTDDPSSRFAVGTVLTGRQGGSARQGRSGNSGKETTLTVK 63
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD- 110
+ R + TF + + +A LR ++ +A + +++ +++ +LE + +
Sbjct: 64 SVRPHQGRLLVTFEEVADRTAAESLRGMRFFAP----PVFDEDDEGYYDHELEGLRVLNC 119
Query: 111 -----------------RQGKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFT 146
+ G V GV + AG++LEI T T L+PF
Sbjct: 120 GPVDADTANARAYEGAEPEPVDIGVVTGVTHGPAGTLLEIAVDADTDLPTAGATILVPFR 179
Query: 147 KFAVLEVNLQENKILIDPIAAGLN 170
V V++ +++ P L
Sbjct: 180 HAIVPIVDVDNGALVVTPPEGLLE 203
>gi|163856316|ref|YP_001630614.1| 16S rRNA-processing protein RimM [Bordetella petrii DSM 12804]
gi|209573544|sp|A9IK36|RIMM_BORPD RecName: Full=Ribosome maturation factor rimM
gi|163260044|emb|CAP42345.1| 16S rRNA processing protein [Bordetella petrii]
Length = 206
Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVL-----------YSNDNRELRIL 51
LV + I +G+ G V + ++ L + + L ++ +E +++
Sbjct: 12 DLVELGRINGAYGVKGWVKVQPHSAQADVLRKASSWWLTRLVPEKARGVVASAPQEYKVV 71
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD- 110
+ + +A +GI + A LR L + R F +DE++ DL +
Sbjct: 72 QARPQGASVVAQLAGITDRDQAEALRGLAVQVSRSQFPAA--ADDEYYWVDLIGCAFYTN 129
Query: 111 RQGKY--WGQVCGVYNFGAGSILEI---------------KNTMEK--TFLIPFTKFAVL 151
+G+ G V V++ GA +IL + ++ + L+PF +L
Sbjct: 130 AEGEPARVGVVEEVFDNGAHAILRVVLQRAPAPGGEPEPRRDAKGRPLEMLVPFVGAHIL 189
Query: 152 EVNLQENKI 160
V+L +I
Sbjct: 190 AVDLSARRI 198
>gi|313836660|gb|EFS74374.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA2]
gi|314928167|gb|EFS91998.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL044PA1]
gi|314972166|gb|EFT16263.1| 16S rRNA processing protein RimM [Propionibacterium acnes HL037PA3]
gi|328907970|gb|EGG27730.1| 16S rRNA processing protein RimM [Propionibacterium sp. P08]
Length = 180
Score = 137 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 6/165 (3%)
Query: 16 THGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIH 71
HGL G+V ++ + P + + +L +++ I F + N +
Sbjct: 17 AHGLRGDVVVEVRTDEPDERFGVGATVRVEGARRDDLTVVRSRWAKGSLIVAFDEVSNRN 76
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A LR L + +D + + EF++ L + D G G V V + A +L
Sbjct: 77 GAEGLRGSVLVVDVEADEDPDDPD-EFWDRRLRGLTVVDESGSTRGTVKDVLHMPAQDVL 135
Query: 132 EIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
I + + L+PF V V++ +I++ + L+ +
Sbjct: 136 VI-DVGGEECLVPFVHQLVPTVDVASGRIVVSSVPGLLDPNAEEA 179
>gi|67924212|ref|ZP_00517652.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
gi|67853931|gb|EAM49250.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
Length = 190
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRELRILKM----- 53
++ + + TI GL GE+ + S + P + L S N L +++
Sbjct: 3 TDQNRWLEIGTIVAPKGLRGELKVLSSTDFPERFKNPGKRWLKSPQNASLEPIELISGKP 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
+I GI+N + A LR KL D +L E+E+ + L +++ +D+
Sbjct: 63 VAGKNIYIVRLQGIENRNQAENLRGHKLLI--LDETPPKLSEEEYHVSQLIDLDVYDQNT 120
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLI----------PFTKFAVLEVNLQENKILI 162
GK G V +++ G +LEIK + + PF V V+L+++KI I
Sbjct: 121 GKMIGNVVDIFSAG-HDLLEIKLITDTETEVKHKKEKKVFVPFVYEIVPVVDLEQHKIEI 179
Query: 163 DPIAAGLN 170
+P L+
Sbjct: 180 NPPIGLLD 187
>gi|87123200|ref|ZP_01079051.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
gi|86168920|gb|EAQ70176.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
Length = 182
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 11/165 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYV-LYSNDNRELRILKMY-- 54
+ + + + T+ GL GE+ I+ + P R++ + R + +
Sbjct: 8 PQPNDWLAVGTVVGAQGLGGELRINPASEFPERFTTPGTRWLQARGGEPRPVELSSGRQL 67
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QG 113
+ F+ F G+++ +A L L + D L + EF DL +E +
Sbjct: 68 PGKQLFVVRFDGVNDRSAAEALVGQTLLVRADDRPA--LADGEFHLLDLVGLEVRLQADA 125
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ G V + + G +LE++ T + LIPF + V EV+L+E
Sbjct: 126 EAIGSVTDLIS-GGNDLLEVERTDGRKQLIPFVEAIVPEVHLEEG 169
>gi|152991244|ref|YP_001356966.1| 16S rRNA processing protein RimM [Nitratiruptor sp. SB155-2]
gi|172048734|sp|A6Q550|RIMM_NITSB RecName: Full=Ribosome maturation factor rimM
gi|151423105|dbj|BAF70609.1| 16S rRNA processing protein RimM [Nitratiruptor sp. SB155-2]
Length = 173
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
K + +A +G T GL+G++ + + P + + +D L I + F
Sbjct: 2 KKLTVARLGRTVGLHGDMKLHILTDFPEQFQKGSTFESDRGSLTIESVNPARGT--VKFQ 59
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID++ A + + LY+ + K L EDE+F D+ + F +GK G+V +
Sbjct: 60 GIDSVDEAKKYTNAYLYSDEETTKKSFPLGEDEYFWFDILGCDVF-EEGKRLGKVVDIQR 118
Query: 125 FGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
AG L ++ K+FLIPF + +V+L + +I
Sbjct: 119 LPAGDYLLVETDKSFVDMKKAKSFLIPFLDMFIEDVHLDQKRI 161
>gi|187478840|ref|YP_786864.1| 16S rRNA-processing protein RimM [Bordetella avium 197N]
gi|109893001|sp|Q2KY81|RIMM_BORA1 RecName: Full=Ribosome maturation factor rimM
gi|115423426|emb|CAJ49960.1| 16S rRNA processing protein [Bordetella avium 197N]
Length = 190
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 23/178 (12%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDN---RELRILKMYRKN 57
D LV + + + +G+ G + + + A+ ++ L + R + +
Sbjct: 7 PDDLVELGRVASAYGVKGWIKVQPHSAQADVLRAAKQWWLAATPKSAPRVYAVQQCRVHG 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR---QGK 114
+A GI + A LR ++ R F EDE++ DL +
Sbjct: 67 ATAVAQLEGIADRDQAEALRGATVWVSRALFPAA--AEDEYYWIDLVGCAFYSSVSGSDV 124
Query: 115 YWGQVCGVYNFGAGSILEI--KNTMEK----------TFLIPFTKFAVLEVNLQENKI 160
G V V++ A +IL + ++ K L+PF + V++ +I
Sbjct: 125 RVGVVEEVFDNPAHAILRVVCQDAEGKALLDAKGRAREMLVPFVSAHIQAVDIAARRI 182
>gi|269120660|ref|YP_003308837.1| 16S rRNA processing protein RimM [Sebaldella termitidis ATCC 33386]
gi|268614538|gb|ACZ08906.1| 16S rRNA processing protein RimM [Sebaldella termitidis ATCC 33386]
Length = 167
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 7/167 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYR-KNKRFI 61
+LV + TI TH LNG V + S + I + +ND + + + R NK+ I
Sbjct: 2 ELVNIGTITGTHHLNGAVKVTSIFQDTDVIISEKVLLEKNNDKKLCTVKSVKRINNKKLI 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
FS I NI+ A L ++ +R E+ EED F+ DL M+ F+++ +Y G +
Sbjct: 62 VEFSEISNINDAKSLNGYQVKIRRDLLP-EKTEED-FYYNDLLGMKVFEKE-EYLGDILD 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A IL + N+ + L+P V +++ + KI ++ I
Sbjct: 119 TMETAAHDILVVVNSDGREILVPMVDIFVKKIDFEAGKIEVELIEGM 165
>gi|78780083|ref|YP_398195.1| 16S rRNA-processing protein [Prochlorococcus marinus str. MIT 9312]
gi|123553678|sp|Q318D6|RIMM_PROM9 RecName: Full=Ribosome maturation factor rimM
gi|78713582|gb|ABB50759.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9312]
Length = 179
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRIL--KMYR 55
M+ +K +++ I + HG+NG++ + S ++ + L + +I ++
Sbjct: 1 MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFK 60
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ + FI GI+N + A L+ K+ K +L+++EF +L +E +
Sbjct: 61 QPGKETFIIKLQGINNRNQAERLKKCKILVKTNKLP--KLKKEEFHLLELINLEVKTLEN 118
Query: 114 KYW---GQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G+V + N ++L ++ +K LIPF K V V+++ N ++I+P L
Sbjct: 119 EELKIIGKVINLENEK-NNLLVVELFKNKKKVLIPFVKEIVPLVDIKNNFLIINPPNGLL 177
Query: 170 N 170
+
Sbjct: 178 D 178
>gi|15610044|ref|NP_217423.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis H37Rv]
gi|15842450|ref|NP_337487.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis
CDC1551]
gi|31794083|ref|NP_856576.1| 16S rRNA-processing protein RimM [Mycobacterium bovis AF2122/97]
gi|121638788|ref|YP_979012.1| 16S rRNA-processing protein RimM [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662751|ref|YP_001284274.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis H37Ra]
gi|148824096|ref|YP_001288850.1| 16S rRNA-processing protein [Mycobacterium tuberculosis F11]
gi|167969536|ref|ZP_02551813.1| 16S rRNA-processing protein [Mycobacterium tuberculosis H37Ra]
gi|215404881|ref|ZP_03417062.1| 16S rRNA-processing protein [Mycobacterium tuberculosis 02_1987]
gi|215412750|ref|ZP_03421462.1| 16S rRNA-processing protein [Mycobacterium tuberculosis 94_M4241A]
gi|215428348|ref|ZP_03426267.1| 16S rRNA-processing protein [Mycobacterium tuberculosis T92]
gi|215431855|ref|ZP_03429774.1| 16S rRNA-processing protein [Mycobacterium tuberculosis EAS054]
gi|215447169|ref|ZP_03433921.1| 16S rRNA-processing protein [Mycobacterium tuberculosis T85]
gi|219558930|ref|ZP_03538006.1| 16S rRNA-processing protein [Mycobacterium tuberculosis T17]
gi|224991280|ref|YP_002645969.1| 16S rRNA processing protein [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798005|ref|YP_003031006.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis KZN
1435]
gi|254232998|ref|ZP_04926325.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis C]
gi|254365547|ref|ZP_04981592.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis str.
Haarlem]
gi|254551979|ref|ZP_05142426.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187926|ref|ZP_05765400.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis
CPHL_A]
gi|260202042|ref|ZP_05769533.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis T46]
gi|260206225|ref|ZP_05773716.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis K85]
gi|289444462|ref|ZP_06434206.1| 16S rRNA processing protein RimM [Mycobacterium tuberculosis T46]
gi|289448572|ref|ZP_06438316.1| 16S rRNA processing protein RimM [Mycobacterium tuberculosis
CPHL_A]
gi|289553304|ref|ZP_06442514.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis KZN
605]
gi|289571094|ref|ZP_06451321.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis T17]
gi|289575612|ref|ZP_06455839.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis K85]
gi|289746706|ref|ZP_06506084.1| ribosome maturation factor rimM [Mycobacterium tuberculosis
02_1987]
gi|289751572|ref|ZP_06510950.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis T92]
gi|289755019|ref|ZP_06514397.1| Ribosome maturation factor rimM [Mycobacterium tuberculosis EAS054]
gi|289759027|ref|ZP_06518405.1| ribosome maturation factor rimM [Mycobacterium tuberculosis T85]
gi|294993997|ref|ZP_06799688.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis 210]
gi|297635525|ref|ZP_06953305.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis KZN
4207]
gi|297732524|ref|ZP_06961642.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis KZN
R506]
gi|298526376|ref|ZP_07013785.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
94_M4241A]
gi|306777195|ref|ZP_07415532.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu001]
gi|306781102|ref|ZP_07419439.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu002]
gi|306785742|ref|ZP_07424064.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu003]
gi|306789781|ref|ZP_07428103.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu004]
gi|306794595|ref|ZP_07432897.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu005]
gi|306798838|ref|ZP_07437140.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu006]
gi|306804684|ref|ZP_07441352.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu008]
gi|306808876|ref|ZP_07445544.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu007]
gi|306968975|ref|ZP_07481636.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu009]
gi|306973312|ref|ZP_07485973.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu010]
gi|307081020|ref|ZP_07490190.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu011]
gi|307085619|ref|ZP_07494732.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu012]
gi|313659856|ref|ZP_07816736.1| 16S rRNA-processing protein RimM [Mycobacterium tuberculosis KZN
V2475]
gi|54039058|sp|P66654|RIMM_MYCBO RecName: Full=Ribosome maturation factor rimM
gi|54041928|sp|P66653|RIMM_MYCTU RecName: Full=Ribosome maturation factor rimM
gi|166226452|sp|A1KMQ1|RIMM_MYCBP RecName: Full=Ribosome maturation factor rimM
gi|166226456|sp|A5U6R2|RIMM_MYCTA RecName: Full=Ribosome maturation factor rimM
gi|254797757|sp|C1AG22|RIMM_MYCBT RecName: Full=Ribosome maturation factor rimM
gi|1403428|emb|CAA98344.1| PROBABLE 16S RRNA PROCESSING PROTEIN RIMM [Mycobacterium
tuberculosis H37Rv]
gi|13882754|gb|AAK47301.1| 16S rRNA processing protein RimM [Mycobacterium tuberculosis
CDC1551]
gi|31619678|emb|CAD96618.1| PROBABLE 16S RRNA PROCESSING PROTEIN RIMM [Mycobacterium bovis
AF2122/97]
gi|121494436|emb|CAL72917.1| Probable 16S rRNA processing protein rimM [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124602057|gb|EAY61067.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis C]
gi|134151060|gb|EBA43105.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis str.
Haarlem]
gi|148506903|gb|ABQ74712.1| 16S rRNA-processing protein [Mycobacterium tuberculosis H37Ra]
gi|148722623|gb|ABR07248.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis F11]
gi|224774395|dbj|BAH27201.1| 16S rRNA processing protein [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319508|gb|ACT24111.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis KZN
1435]
gi|289417381|gb|EFD14621.1| 16S rRNA processing protein RimM [Mycobacterium tuberculosis T46]
gi|289421530|gb|EFD18731.1| 16S rRNA processing protein RimM [Mycobacterium tuberculosis
CPHL_A]
gi|289437936|gb|EFD20429.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis KZN
605]
gi|289540043|gb|EFD44621.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis K85]
gi|289544848|gb|EFD48496.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis T17]
gi|289687234|gb|EFD54722.1| ribosome maturation factor rimM [Mycobacterium tuberculosis
02_1987]
gi|289692159|gb|EFD59588.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis T92]
gi|289695606|gb|EFD63035.1| Ribosome maturation factor rimM [Mycobacterium tuberculosis EAS054]
gi|289714591|gb|EFD78603.1| ribosome maturation factor rimM [Mycobacterium tuberculosis T85]
gi|298496170|gb|EFI31464.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
94_M4241A]
gi|308214477|gb|EFO73876.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu001]
gi|308326088|gb|EFP14939.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu002]
gi|308329652|gb|EFP18503.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu003]
gi|308333791|gb|EFP22642.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu004]
gi|308337185|gb|EFP26036.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu005]
gi|308340916|gb|EFP29767.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu006]
gi|308344828|gb|EFP33679.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu007]
gi|308348776|gb|EFP37627.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu008]
gi|308353477|gb|EFP42328.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu009]
gi|308357342|gb|EFP46193.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu010]
gi|308361226|gb|EFP50077.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu011]
gi|308364846|gb|EFP53697.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
SUMu012]
gi|323718517|gb|EGB27688.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis
CDC1551A]
gi|326904521|gb|EGE51454.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis W-148]
gi|328457779|gb|AEB03202.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis KZN
4207]
Length = 176
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 13/174 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL-----------RILKMYRK 56
+++ + +HG+ GEV ++ ++P D I + +
Sbjct: 3 LVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQH 62
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + +G+ + +A LR D + E D +++ L + G+
Sbjct: 63 GGRLLVRLAGVADRDAADALRGSLFVIDADDLPPID-EPDTYYDHQLVGLMVQTATGEGV 121
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V V + AG +L +K + L+PF + V V+L + + IDP LN
Sbjct: 122 GVVTEVVHTAAGELLAVKRDSD-EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLN 174
>gi|297794617|ref|XP_002865193.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
gi|297311028|gb|EFH41452.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
Length = 654
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---------LNRYVLYSNDNRELRILKMYRK 56
LV + + HGL GE+ I + P L + ++ E+ +++
Sbjct: 80 DLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQQLMGQEKIDEVELVEGRPH 139
Query: 57 --NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
K +I F G+D++ +L L A+ D + + +E F++ DL M+ ++ G
Sbjct: 140 PAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDDDE--FYSRDLVGMKVLLKETG 197
Query: 114 KYWGQVCGVYNFGAGSIL--------EIKNTMEKT---FLIPFTKFAVLEVNLQENKILI 162
+ G V +++ G +L E+ N KT IPF V +V+L+ ++ I
Sbjct: 198 QLVGTVANIFDNGGNDLLHVLLDSSMEVCNGSAKTNQLVWIPFVDAIVPDVDLERKEMYI 257
Query: 163 DPIAAGLN 170
P L
Sbjct: 258 TPPKGLLE 265
>gi|123967026|ref|YP_001012107.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9515]
gi|166226464|sp|A2BYY9|RIMM_PROM5 RecName: Full=Ribosome maturation factor rimM
gi|123201392|gb|ABM73000.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9515]
Length = 179
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYR 55
M+ D+ +++ I + G+NG++ + S ++ + + + ++L+++ ++
Sbjct: 1 MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQ 60
Query: 56 KNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
K + F+ TF I N + A +L+ KL K + +L ++EF T+L ++ +
Sbjct: 61 KPGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEIP--KLNKNEFHLTELMNLKVKILEN 118
Query: 114 ---KYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
K G+V + N ++L IK T +K L+PF K + E++++ ++I P L
Sbjct: 119 NKLKIIGKVVNLENEK-NNLLVIKLLTNDKEVLVPFVKEIIPEIDIKNKFLIITPPPGLL 177
Query: 170 N 170
Sbjct: 178 E 178
>gi|328473830|gb|EGF44663.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 220]
Length = 140
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELR-ILKMYRKNKRF 60
+ + I THGL GE+ + + + P + + Y+ N + + I++ +RK+K F
Sbjct: 1 MYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNF 60
Query: 61 -IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F G IH +++ L K D LEE+EF+ ++ G+ G++
Sbjct: 61 DLLMFEGFTGIHQVERMKEGVLKIKEAQLTD--LEENEFYFHEIIGCIVVTTDGEELGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKT 140
+ GA + +K + +K
Sbjct: 119 TEILTPGANDVWVVKGSDKKE 139
>gi|262202022|ref|YP_003273230.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
gi|262085369|gb|ACY21337.1| 16S rRNA processing protein RimM [Gordonia bronchialis DSM 43247]
Length = 172
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYRKNKRF 60
+++ + +HG+ GEV +D ++P +RE + R
Sbjct: 3 LVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGRMPKGAGDREFTVTAARHHAGRL 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ + + + + +A LR + + + + + DEF++ +LE + G G V
Sbjct: 63 LLSLAEVTDRGAADGLRGVLFLIDSSEAQPSD-DPDEFYDHELEGVPVSTVDGVSVGVVE 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V + G +L ++ + L+PF + V V + +I+IDP L+
Sbjct: 122 SVLHLPGGELLSVRTEDRREVLVPFVRQIVPTVTRE--QIVIDPPDGLLDEA 171
>gi|167756886|ref|ZP_02429013.1| hypothetical protein CLORAM_02435 [Clostridium ramosum DSM 1402]
gi|237734596|ref|ZP_04565077.1| ribosome maturation factor rimM [Mollicutes bacterium D7]
gi|167703061|gb|EDS17640.1| hypothetical protein CLORAM_02435 [Clostridium ramosum DSM 1402]
gi|229382416|gb|EEO32507.1| ribosome maturation factor rimM [Coprobacillus sp. D7]
Length = 169
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
++KL + I THGL GE+ I S ++ + + Y N + +I+
Sbjct: 1 MEKL-KIGKIVGTHGLKGELKIRSNSDFADKRFKKGNEIIIRYQNQDLVYKIITSRIHKG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
++ +F +I+ + +Y + D E L+ DE+F TDL M+ +G G
Sbjct: 60 NYLVSFRDNQDINLVEKYIGSFVYGYKDD---ELLDADEYFYTDLIGMQVVSTEGTKIGP 116
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
V +Y+ IL I + K IP+ + +V++++ I++ I ++
Sbjct: 117 VTSIYDNTRHDILNIDHN-GKNVAIPYVDAFIKDVDVEKKIIVVMLIKGLIDED 169
>gi|326771775|ref|ZP_08231060.1| 16S rRNA processing protein RimM [Actinomyces viscosus C505]
gi|326637908|gb|EGE38809.1| 16S rRNA processing protein RimM [Actinomyces viscosus C505]
Length = 185
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 11/184 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A +G H L GEV ++ ++P L + ++ R+ A
Sbjct: 2 LLTLAVVGPAHALKGEVRLEIRTDDPEGRLAPGTTVPTEPAHAGPLTVSRLRFDGSRWFA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEE-------LEEDEFFNTDLEEMETFDRQGKY 115
F + +A LR ++L + D + +E + E+ ++ +L + G+
Sbjct: 62 AFEQARDRTAAEALRGVRLLVETDDDQGDEGHDEGHEVSEEAWYRHELVGLRALSVSGEE 121
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V A L + +PF + V ++ + + + P
Sbjct: 122 LGEVTDVEPGVAQDRLVVTTPEGDDVAVPFVEALVPAIDPEAGTVTLAPPGGLFPGHGQA 181
Query: 176 NPQY 179
Sbjct: 182 EEAR 185
>gi|40063300|gb|AAR38118.1| 16S rRNA processing protein RimM [uncultured marine bacterium 578]
Length = 173
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY--SNDN--RELRILKMYRKNKRF 60
+K +L+ I G+ G V I SY ++ Y + ND ++ I ++K
Sbjct: 10 EKKLLVGKINGFFGIQGWVKIFSYTEPRKNILNYQPWYSINDGVYEKIEITNGREQSKTI 69
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+A G+DN + +L LY ++ +L + + + +L ++ G V
Sbjct: 70 VAHIKGVDNRDQSLKLIGRDLYIDKEQLP--KLADGKHYWYELVGFSVINQDKIELGVVD 127
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+ ++L +K + IP+ + ++ ++ + +I +D
Sbjct: 128 YLVDTGSNNVLV--TKGKKEYWIPYVEPFLVSIDHENREITVD 168
>gi|297571154|ref|YP_003696928.1| 16S rRNA processing protein RimM [Arcanobacterium haemolyticum DSM
20595]
gi|296931501|gb|ADH92309.1| 16S rRNA processing protein RimM [Arcanobacterium haemolyticum DSM
20595]
Length = 177
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 7/177 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A +G HGL GEV ++ ++P Y + + + +
Sbjct: 2 LLTVAIVGAPHGLKGEVKLNVRTDSPERRLVVGAMYETQPAELGPVTLASVRNYKGSTFV 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
TF+ + A LR +KL + + EE +F +L +E D G G+V G+
Sbjct: 62 TFAEYADRTGAEALRGVKLVIETDEDDVEEDA---WFAHELIGLEALDPDGYELGEVAGL 118
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
A L ++ +PF K V EV++ ++ ++ID + +
Sbjct: 119 EPGPAHDYLIVREPDGIMTRVPFVKAIVTEVDVDDHCVVIDAPRGLFSEDEIVEDGE 175
>gi|262370648|ref|ZP_06063973.1| 16S rRNA processing protein RimM [Acinetobacter johnsonii SH046]
gi|262314448|gb|EEY95490.1| 16S rRNA processing protein RimM [Acinetobacter johnsonii SH046]
Length = 182
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG ++I S ++ Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWIYSNTEPMSNIFDYLPWYIETKAGWQTIDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + +A L ++ + + DEF+ +DL+ + +
Sbjct: 68 LVVSLKGVIDRTAADNLVGANVWISKAQLPKAGM--DEFYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
G++ ++ GA ++ + T + +IP+ K V V+L+ +I ++
Sbjct: 126 LGKIHEMFETGANDVMVVHATPDSIDTEERMIPWHKDVVHRVDLEAGRIYVN 177
>gi|315924208|ref|ZP_07920434.1| 16S rRNA processing protein RimM [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622610|gb|EFV02565.1| 16S rRNA processing protein RimM [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 184
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 10/168 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNRELRILKMYRKN 57
+ + + + HG+ GE+ + ++ + + + I +
Sbjct: 11 MKDWLTIGQVVNVHGIRGEIKVAPMTDDVQRFDALDQVWLMHPRKEEKKAYAIESVRVHK 70
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ +G+DN +++ L+ + R+ E L + E + DL M D G
Sbjct: 71 GNVLIKLAGVDNRNASEALKQFHVMIPREQ--GEPLGDHEIYIADLIGMNVVDCARGEIG 128
Query: 118 QVCGVY-NFGAGSILEIKNTMEKTFL-IPFTKFAVLEVNLQENKILID 163
V V G L+I+ + L +PF + + +L + D
Sbjct: 129 VVADVLTTTGTVDTLDIRLAGGRKHLYVPFRRIFFPDWDLAAGVLSAD 176
>gi|159028219|emb|CAO88029.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 192
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 26/189 (13%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS------NDNRELRILKMY--RK 56
+ + + TI GL GE+ + S ++ P + + + RE+ +L+
Sbjct: 3 ENWLEIGTIVAPQGLEGELRVLSVSDFPERFQKRGIRGIQETQGGEIREITLLRGRELPG 62
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
++ G++N A LR KL+A + + L+ DE+ ++L +E + G+
Sbjct: 63 KNVYVIKLEGVENREQAQALRGYKLWANK--LEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 116 WGQVCGVYNFGAGSILEIKNTM--------------EKTFLIPFTKFAVLEVNLQENKIL 161
G V + G IL ++ + T L+PF K V V+L+ +I
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVKKKSPSSDSKATALVPFVKEIVPLVDLKAARIE 179
Query: 162 IDPIAAGLN 170
I P L
Sbjct: 180 IAPPPGLLE 188
>gi|194333842|ref|YP_002015702.1| 16S rRNA processing protein RimM [Prosthecochloris aestuarii DSM
271]
gi|226734090|sp|B4S7L8|RIMM_PROA2 RecName: Full=Ribosome maturation factor rimM
gi|194311660|gb|ACF46055.1| 16S rRNA processing protein RimM [Prosthecochloris aestuarii DSM
271]
Length = 169
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 4 LDKLVLM-ATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKN 57
++KL+ + I GL GE+ + + P + L E R+ +N
Sbjct: 1 MNKLLYLAGRILKPKGLKGELKVLPETDFPESFLQRKLLLVGATEQSAVERRVAGATLQN 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ F GID+ A + ++Y D L D + DL + D + G
Sbjct: 61 GFVLLRFYGIDSREDAESIVGERIYITEDDL--IPLPPDTAYIHDLVGLRVLDEDCREIG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ V A + EI +K L+P + V+E +L++ ++ I
Sbjct: 119 VIRDVLKLPAHEVYEIA-AGDKIVLVPAIEEFVVETDLEKGEMTIR 163
>gi|300741683|ref|ZP_07071704.1| 16S rRNA processing protein RimM [Rothia dentocariosa M567]
gi|300380868|gb|EFJ77430.1| 16S rRNA processing protein RimM [Rothia dentocariosa M567]
Length = 212
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 43/211 (20%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---------DLNRYVLYSN-----DNRELRILKM 53
VL+A IG HG+ GEV + + + P DL + S L+++
Sbjct: 3 VLVARIGKPHGIRGEVTVQLFTDIPEERFAPGEVLDLENFTPKSPVATVAPTGRLKVVGH 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETFD-- 110
K + F + + A ELR +L F+ E E+DE F+ +L + +
Sbjct: 63 RWNKKILVVRFEEVTTRNQAEELRGSRLM-----FEVPEDEDDEGFYEQELVNLPVYLLM 117
Query: 111 ------------RQGKYWGQVCGVYNFGAGSILEIKNT---MEKTFLIPFTKFAVLEV-- 153
+ GK G+V G+ A IL +K +IPF + V EV
Sbjct: 118 KVPEGENPVNNPKAGKPLGKVTGLQTMPAQDILLVKLAAEHGGDEIMIPFVEEIVPEVVT 177
Query: 154 ---NLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ + +L+ P +N ++ +
Sbjct: 178 TAED-EPGFVLLTPPPGLINVAEAESAASNS 207
>gi|227499932|ref|ZP_03930025.1| possible 16S rRNA processing protein [Anaerococcus tetradius ATCC
35098]
gi|227218041|gb|EEI83314.1| possible 16S rRNA processing protein [Anaerococcus tetradius ATCC
35098]
Length = 162
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A + TTHG+ G V + +Y++N + + + L I + + + F
Sbjct: 3 ITVAEVITTHGIRGNVKVKTYSDNEMRFKKGAKVYIGDELLTIEDSFNQKGMMVLKFDQY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
++I+ + +L + + +D EL+EDEF+ L ++T+ G+ G+V V G
Sbjct: 63 NDINDSLKLVGKDITIEEEDL--GELKEDEFYIYKLIGLDTY-SNGQKVGRVKDVI-TGV 118
Query: 128 --GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ I+ +K L+P K + V+++ KI +D
Sbjct: 119 YPNDVYVIETMDKKEILLPALKSVIKNVDIENKKIEVD 156
>gi|172040481|ref|YP_001800195.1| 16S rRNA-processing protein RimM [Corynebacterium urealyticum DSM
7109]
gi|209573573|sp|B1VG72|RIMM_CORU7 RecName: Full=Ribosome maturation factor rimM
gi|171851785|emb|CAQ04761.1| 16S rRNA processing protein [Corynebacterium urealyticum DSM 7109]
Length = 194
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 34/193 (17%)
Query: 8 VLMATIGTTHGLNGEVYIDSYAN-NPIDLNRY----VLYSNDNRELRILKMYRKNKRFIA 62
+ + + HG+ GEV +D + P + + R+L + M R R +
Sbjct: 4 LQIGRVIKPHGVKGEVVVDPSTDHVPERFAIGEALRAVQTGKERQLTVTGMRRHQNRLLV 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR----------- 111
TF I + A LR + A + +D +++ +L + +
Sbjct: 64 TFEEIRDRDEAESLRGARFMA----APLHDDSDDGYYDHELIGLRVLNVGSVDADTANRR 119
Query: 112 --QGK-----YWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQE 157
+G+ G+V GV + AG+ LE+ T T LIPF V V+L
Sbjct: 120 AYEGEQPEPVDIGEVTGVSHGPAGATLEVAVDADADLPTAGSTILIPFKLAIVPIVDLDN 179
Query: 158 NKILIDPIAAGLN 170
+++ P L
Sbjct: 180 EALVVTPPEGLLE 192
>gi|325067033|ref|ZP_08125706.1| 16S rRNA processing protein RimM [Actinomyces oris K20]
Length = 182
Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 8/181 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI-DLNRYVLYSNDN---RELRILKMYRKNKRFIA 62
L+ +A IG H L GEV ++ ++P L + L + ++ R+ A
Sbjct: 2 LLTVAVIGPAHALKGEVRLEIRTDDPEGRLAPGTTIPTEPAHAGPLTVSRLRFDGSRWFA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEED----EFFNTDLEEMETFDRQGKYWGQ 118
F + +A LR ++L + D + ++ +L + G+ G+
Sbjct: 62 AFEQARDRTAAEALRGVRLLVETDDDAPGGEGSEESEEAWYRHELVGLRALSVSGEELGE 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQ 178
V V A L + +PF + V ++ + + + P
Sbjct: 122 VTDVEPGVAQDRLVVTTPEGDDVAVPFVEVLVPAIDPEAGTVTLAPPGGLFPGRGQAEEA 181
Query: 179 Y 179
Sbjct: 182 R 182
>gi|118579529|ref|YP_900779.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
gi|118502239|gb|ABK98721.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
Length = 152
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 23 VYIDSYANNPIDL---NRYVLYSNDN--RELRILKMYRKNKRFIATFSGIDNIHSASELR 77
+ + SY+ + L + +L S D + + +F+ F G+D+I A L
Sbjct: 2 LKLHSYSGSVESLCTCDSVILRSRDGALNRFEPKPVLPRPGKFLIGFKGVDHIDQAQTLV 61
Query: 78 DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM 137
++ +R E EEDE++ DL +E +G G + ++ G+ I ++
Sbjct: 62 GSEICLRRDQLP--EPEEDEYYWCDLIGLEVATVEGMALGVLEEIFKAGSSDIYVVRGA- 118
Query: 138 EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +LIP + V+L+ ++LI P+ L+
Sbjct: 119 GREYLIPAIADVIHSVDLEMGRMLITPLEGLLD 151
>gi|308804335|ref|XP_003079480.1| COG0806: RimM protein, required for 16S rRNA processing (ISS)
[Ostreococcus tauri]
gi|116057935|emb|CAL54138.1| COG0806: RimM protein, required for 16S rRNA processing (ISS)
[Ostreococcus tauri]
Length = 280
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/215 (20%), Positives = 69/215 (32%), Gaps = 44/215 (20%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL---------------------NRYVLYSN 43
D LV + I HGL GEV + + + Y
Sbjct: 47 DGLVQVGAIVGAHGLRGEVRVLPMTDFIDERFMTRGSTLQAETSAQGRSKVSGEYDAPIG 106
Query: 44 DNRELRILKMYRK----NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELE----- 94
+ RE+ + I SG+D+ SA L +L+ D E
Sbjct: 107 ETREVSVRGGRWVTSKGRNDVIVKLSGVDDRTSAEALVGTRLFVSPSDRAPLRDEAGQTS 166
Query: 95 ---EDEFFNTDLEEMETFD-RQGKYWGQVCGVYNF-GAGSILEIKNTMEKT--------- 140
+DEF+ +L+ M D G G V V G +L++ +
Sbjct: 167 GDGDDEFYAQELQGMRVIDRESGSEVGVVEDVVRGAGTQDLLKVGFSAFDEEFEIDTEFY 226
Query: 141 FLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+PF K V V+ + + I P L+ T K
Sbjct: 227 VYVPFVKDIVPLVDAKNRLMEITPPGGLLDLKTPK 261
>gi|154249335|ref|YP_001410160.1| 16S rRNA processing protein RimM [Fervidobacterium nodosum Rt17-B1]
gi|171769331|sp|A7HKS0|RIMM_FERNB RecName: Full=Ribosome maturation factor rimM
gi|154153271|gb|ABS60503.1| 16S rRNA processing protein RimM [Fervidobacterium nodosum Rt17-B1]
Length = 177
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 1 MVKLDKL----VLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELRILK- 52
M +++ L + + THGLNG++ + ++N P + V Y+ ++ I+K
Sbjct: 2 MRRVEDLLKDKIPYGILSNTHGLNGDLKLYLFSNMPELVEKITEAVAYNESQKKFVIVKF 61
Query: 53 --MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+ + + FI +GID I A +L+ +Y + F + + E++ ++ E +D
Sbjct: 62 SKVRKASDYFIVHLTGIDTISEAEKLKGFIIYLDKSFFPKSK--DGEYYFFEILNAEVYD 119
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G V + G ++ +K ++ LIP + +L+++ + KI+++ + L
Sbjct: 120 NAGEFIGIVEDIIETGNNDVIVVK-KEKEEVLIPVIERYILKIDKEAKKIIVN-MPEWLE 177
>gi|311113786|ref|YP_003985008.1| 16S rRNA processing protein RimM [Rothia dentocariosa ATCC 17931]
gi|310945280|gb|ADP41574.1| 16S rRNA processing protein RimM [Rothia dentocariosa ATCC 17931]
Length = 212
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 43/211 (20%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPI---------DLNRYVLYSN-----DNRELRILKM 53
VL+A IG HG+ GEV + + + P DL + S L++
Sbjct: 3 VLVARIGKPHGIRGEVTVQLFTDIPEERFAPGEVLDLENFTPKSPVATVAPTGRLKVAGH 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-FFNTDLEEMETFD-- 110
K + F + + A ELR +L F+ E E+DE F+ +L + +
Sbjct: 63 RWNKKILVVRFEEVTTRNQAEELRGSRLM-----FEVPEDEDDEGFYEQELVNLPVYLLM 117
Query: 111 ------------RQGKYWGQVCGVYNFGAGSILEIKNT---MEKTFLIPFTKFAVLEV-- 153
+ GK G+V G+ A IL +K +IPF + V EV
Sbjct: 118 KVPEGENPVNNPKAGKPLGKVTGLQTMPAQDILLVKLAAEHGGDEIMIPFVEEIVPEVVT 177
Query: 154 ---NLQENKILIDPIAAGLNNTTMKNPQYDC 181
+ + +L+ P +N ++ +
Sbjct: 178 TAED-EPGFVLLTPPPGLINVAEAESAASNS 207
>gi|145347214|ref|XP_001418069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578297|gb|ABO96362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 30/196 (15%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL-------NRYVLYSNDNRELRILKMYRK- 56
+ L+ + I H L GEV + + + R+ + R +++
Sbjct: 8 ESLIQVGAIVGAHSLRGEVRVKPMTDFIEERLMRTGSTLRFDAPPGEVRAVKVRSGRWVT 67
Query: 57 ---NKRFIATFSGIDNIHSASELRDLKLYA---KRQDFKDEELEE-----DEFFNTDLEE 105
I +G D+ ++A L +L+ R+ + +E E DEF+ +LE
Sbjct: 68 SKGRNDVIVKLAGCDDRNAAEALVGTRLFVLPSDREPLRKDEGAEGSDGDDEFYAQELEG 127
Query: 106 METFDRQ-GKYWGQVCGVYNF-GAGSILEIKNTMEKT---------FLIPFTKFAVLEVN 154
+ +R G+ G V V G +L++ +PF K V V+
Sbjct: 128 LRVVERDTGEVIGVVEDVVRGAGTQDLLKVAFIALDEETGIDAEYYVYVPFVKEIVPLVD 187
Query: 155 LQENKILIDPIAAGLN 170
+ I P L+
Sbjct: 188 ATNGFMEITPPGGLLD 203
>gi|123969347|ref|YP_001010205.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
AS9601]
gi|166226465|sp|A2BTI7|RIMM_PROMS RecName: Full=Ribosome maturation factor rimM
gi|123199457|gb|ABM71098.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. AS9601]
Length = 179
Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKN 57
M+ ++ +++ I + HG+NG++ + S ++ + L +I +
Sbjct: 1 MIIKNEWLIVGFITSCHGINGQLKVKSLSDFEERFLKPGMRWLQKESEHPSKIELISGFK 60
Query: 58 K----RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ FI F GI+ + A +L+ KL K +L+++EF +L ++E +
Sbjct: 61 QPGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLP--KLKKEEFHLLELIDLEVKTLEN 118
Query: 114 ---KYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
K G+V + N ++L I+ +K LIPF K V V+++ N ++I+P L
Sbjct: 119 DELKIIGKVINLENEK-NNLLIIELFKNQKKVLIPFVKEIVPLVDIKNNFLIINPPNGLL 177
Query: 170 N 170
Sbjct: 178 E 178
>gi|21672656|ref|NP_660723.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25009062|sp|Q8K9F5|RIMM_BUCAP RecName: Full=Ribosome maturation factor rimM
gi|21623292|gb|AAM67934.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 175
Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL---KMYRKNKRFIATF 64
+L+ IG +G+ G V S+ N + Y + ++ I+ K + N FI
Sbjct: 12 ILIGKIGKAYGILGWVKFFSFTENKEKIFSYFPWFILKKKWEIIHVDKWKKHNNNFIIHI 71
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I + + S+ +L+++ + L+EDE++ D+ + + F+ + +Y G+V +
Sbjct: 72 ENILDRSTVSKFTNLEIFIDKSILPI--LKEDEYYWNDVIDCKVFNSRKEYLGKVINLIR 129
Query: 125 FGAGSILEIK----NTMEKTFLIPFT-KFAVLEVNLQENKILI 162
+L I+ K +IPF K V +N++ I +
Sbjct: 130 NQNNDVLIIRNNLKKNNFKKIMIPFIHKKIVKYINVKHKIITV 172
>gi|94676597|ref|YP_588654.1| 16S rRNA processing protein RimM [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|172046204|sp|Q1LTR0|RIMM_BAUCH RecName: Full=Ribosome maturation factor rimM
gi|94219747|gb|ABF13906.1| 16S rRNA processing protein RimM [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 175
Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 13/169 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRK---NKRF 60
V++ TI + +G++G + I S+ N + Y N L ++ K + +
Sbjct: 4 NPVVLGTISSAYGISGWLNIISFTQNAASIFEYQPWFIKKLNTWLDVILDEWKYNYHNKL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I + I+N +A + + L + +++ DL + G+V
Sbjct: 64 IIKINSIENREAAQLFANCNIIVDASQLPT--LSDGDYYWKDLIGCQVETINSYQLGKVI 121
Query: 121 GVYNFGAGSILEIKNTME-----KTFLIPFT-KFAVLEVNLQENKILID 163
+ G+ ++ ++ + LIPF + V+L + I +D
Sbjct: 122 DLIETGSNDVMVVQANQQHSTKINELLIPFIYGQVIKNVDLATHIIKVD 170
>gi|254785310|ref|YP_003072739.1| 16S rRNA-processing protein RimM [Teredinibacter turnerae T7901]
gi|237685051|gb|ACR12315.1| 16S rRNA processing protein RimM [Teredinibacter turnerae T7901]
Length = 179
Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDN-RELRILKMYRKN 57
K L+ + + G+ G + + S+ +N + + + L + + + I +
Sbjct: 3 AKRSNLISVGRLTGVFGIKGWIKVKSFTSPEDNILQYSPWWLKTRHGVKPVEIDGFEARA 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY- 115
I G+D+ A+ L ++ + ++ +L + +F+ +L + +R +G+
Sbjct: 63 NGIIVHLPGVDDRDEAALLTNVDIAVEKSQLP--QLGDTDFYWHELVGLRVKNRFEGQEC 120
Query: 116 -WGQVCGVYNFGAGSILEIKN----TMEKTFLIPFT-KFAVLEVNLQENKILI--DP 164
G V + GA +L + + LIP+ + VL V+L+ +IL+ DP
Sbjct: 121 DLGVVKELLETGANDVLVVVGDDSSADRRERLIPYVWETYVLAVDLERAEILVSWDP 177
>gi|319938305|ref|ZP_08012702.1| hypothetical protein HMPREF9488_03538 [Coprobacillus sp. 29_1]
gi|319806598|gb|EFW03256.1| hypothetical protein HMPREF9488_03538 [Coprobacillus sp. 29_1]
Length = 167
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNR--ELRILKMYRKNK 58
+++ V++ I THG+ GE+ ++ + + + ++L + ++ +
Sbjct: 1 MEQ-VIIGKIVNTHGIKGELKVNVSTDFIEERFQKGNHLLIDDHGTMVDMTVATHRIHKG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ +F +I+ + + +YA + + L + E++ DL E ++R G G
Sbjct: 60 HVLVSFVDFQDINKVEKYKGCTVYAYKDETL---LNDGEYYVGDLIGCEVYNR-GILIGT 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
V V + +L + T + LIP+ V ++ +I ++ I
Sbjct: 116 VKDVQLYDHHDVLVVSGTQK--ILIPYVDAFVKNEDIVNKRIDVELIEG 162
>gi|167570766|ref|ZP_02363640.1| 16S rRNA-processing protein [Burkholderia oklahomensis C6786]
Length = 229
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL------NRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + L R+ RI +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLGARDWWLQKGAERKFARITQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G + +A LR +++ +R DF L +DEF+ DL ++ + G
Sbjct: 112 GGAVVAHPAGSVDRDAALALRGFRVFVRRGDFPA--LADDEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V +I++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPTTGKDGRPAVGERLIPFVGVYVKAVEQAAGRIVVD 224
>gi|255077074|ref|XP_002502189.1| predicted protein [Micromonas sp. RCC299]
gi|226517454|gb|ACO63447.1| predicted protein [Micromonas sp. RCC299]
Length = 237
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 49/233 (21%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL-------------------NRYVLYSNDNR 46
+LV + + HGL GEV + + + + Y
Sbjct: 1 ELVQTGAVVSAHGLRGEVRVMPFTDFVEERFFSPNTQYLEDEAQGRGVGGEYNKAPGSVS 60
Query: 47 ELRILKMYR--KNKRF--IATFSGIDNIHSASELRDLKLYAKRQDFKDEELE-----EDE 97
++RI+ R + G+++ ++A+ L +L+ D E +DE
Sbjct: 61 KIRIVSGREVTSQGRVECLIKIKGVNDRNAAAALIGRRLFVSSTDRPQLREEQNGDGDDE 120
Query: 98 FFNTDLEEMETFD-RQGKYWGQVCGVYNF-GAGSILEIKNTM------------------ 137
F+ ++LE E GK+ G V +Y G +L+I
Sbjct: 121 FYASELEGCEVIMKEDGKHVGVVIDIYRGAGEHDLLKISVPPLPSSDGEASEEKPATNKG 180
Query: 138 -EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPLDSAGKK 189
+ +PF K V V+L + I P A L+ P+
Sbjct: 181 PSEHVFVPFVKEIVPVVDLARGVLEITPPAGLLDLRQKSKPKKRPKARGPPPP 233
>gi|167563602|ref|ZP_02356518.1| 16S rRNA-processing protein [Burkholderia oklahomensis EO147]
Length = 229
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL------NRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + L R+ RI +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLGARDWWLQKGAERKFARITQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A +G + +A LR +++ +R DF L +DEF+ DL ++ + G
Sbjct: 112 GGAVVAHPAGSVDRDAALALRGFRVFVRRGDFPA--LADDEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V +I++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPTTGKDGRPAVGERLIPFVGVYVKAVEQAAGRIVVD 224
>gi|169335119|ref|ZP_02862312.1| hypothetical protein ANASTE_01526 [Anaerofustis stercorihominis DSM
17244]
gi|169257857|gb|EDS71823.1| hypothetical protein ANASTE_01526 [Anaerofustis stercorihominis DSM
17244]
Length = 162
Score = 133 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ V++ I HG+ GE+ + ++ N+E + + I
Sbjct: 1 MKNNVVIGKIFNVHGIKGELKVRPLTDDINRFKILKRCFIKNKEYEVSAARINKDQIILK 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ + A L++ + R+D LEE E+F DL+ ++ D G + V
Sbjct: 61 LKGLDDRNEAEILKNEYVEVLRED--SVGLEEGEYFIEDLKGLKVLDEDDNEIGIMSDVL 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
A I K K ++P K +LE+N+ E
Sbjct: 119 TNAAIDIYVFK-IEGKEQMLPALKENILEINIDE 151
>gi|168032186|ref|XP_001768600.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680099|gb|EDQ66538.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 133 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 20/196 (10%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNR----ELRILKMYR 55
D V + + THG+ GE+ I S + P + R++ + E+ +++
Sbjct: 1 DDFVEIGIVAETHGVYGELRIRSSTDFPEERFETPGTRWIKKMRMGKPSITEVELIEGRE 60
Query: 56 ---KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
K ++ G+D + ASE + + R D + LEEDE + DL M+ ++
Sbjct: 61 TIGKQTSWLVRLKGVDTLEKASEFQGATMLI-RADERPVSLEEDEDYIPDLLGMDVVIQE 119
Query: 113 GKY-WGQVCGVYNFGAGSILEI---KNTMEKTF--LIPFTKFAVLEVNLQENKILIDPIA 166
K G + V+N GA +L + K K IPF K V V++ N++ I P
Sbjct: 120 TKETIGTIVDVHNSGASDLLRVQLTKPIRGKDVRIWIPFVKEIVPVVDISSNRVEISPPD 179
Query: 167 AGLN-NTTMKNPQYDC 181
L+ N + P
Sbjct: 180 GLLDLNVPKEGPSRKE 195
>gi|227872396|ref|ZP_03990743.1| possible 16S rRNA processing protein [Oribacterium sinus F0268]
gi|227841756|gb|EEJ52039.1| possible 16S rRNA processing protein [Oribacterium sinus F0268]
Length = 174
Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNR--------ELRILK 52
+ K + + TI HGL GE+ + P L +L +I
Sbjct: 1 MLKELRVGTILKPHGLKGEMKVFPTTEEPRRFTQLKELILRRESKGLRDTSFSESRKIKS 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + + + GID++ A + R++ L R+ L ++EFF D ME +
Sbjct: 61 VRFQGEFLLLQLEGIDSVEMAEKYRNVSLMIPREQ--ALPLGDNEFFLGDYIGMEVYIEG 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+V V GA + ++ EK +LIP V E+ +EN+I I + L
Sbjct: 119 KELLGEVKEVIETGANLVFSVEGK-EKEYLIPHIPPVVYEI--KENRIAIHLMEGLLE 173
>gi|33519645|ref|NP_878477.1| 16S rRNA-processing protein RimM [Candidatus Blochmannia
floridanus]
gi|48474365|sp|Q7VQF9|RIMM_BLOFL RecName: Full=Ribosome maturation factor rimM
gi|33517308|emb|CAD83693.1| 16S rRNA processing protein [Candidatus Blochmannia floridanus]
Length = 185
Score = 133 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY----VLYSNDNRELRILKMY-RKNKRF 60
+++ I +G+ G V I S+ D+ Y + + + + +++ NK +
Sbjct: 12 NPIVIGRIKGAYGILGWVKILSFTEKIEDIFVYNPWFIFFRSKWKVIKLEYWRLMNNKNY 71
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F + + + A L L + F +DE++ D+ + GK G+V
Sbjct: 72 IVKFFNVSDRNHAMALSQHNLVVESIQFPKLY-NKDEYYWKDIIGCKIMTINGKCLGRVI 130
Query: 121 GVYNFGAGSILEIKNTMEK-----TFLIPFT-KFAVLEVNLQENKILID 163
+ + A IL +++ LIPF K + +V+L +N +++D
Sbjct: 131 SIIDTKAHDILVVRSEEYGFTKYVDCLIPFILKKIIKDVDLIKNIVVVD 179
>gi|237785765|ref|YP_002906470.1| 16S rRNA processing protein [Corynebacterium kroppenstedtii DSM
44385]
gi|237758677|gb|ACR17927.1| 16S rRNA processing protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 215
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 45/206 (21%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV------LYSNDNR---------ELRI 50
V + + HG+ GE ++ ++P R L +
Sbjct: 12 NYVQIGRVVKPHGVRGEFVVEPTTDDPEGRFAVGSVVKAMPVGGRQRRNGGSQEPFTLTV 71
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+ R I I + ++A LR ++ A+ + DEF++ +LE +
Sbjct: 72 ASVRGHQGRIIMKAEEIPDRNAAESLRGVRFVAE----PVIDHSGDEFYDFELEGLHVLT 127
Query: 111 ------------------RQGKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIP 144
+ + G V V A +LE++ + +T LIP
Sbjct: 128 VGPVSAEEAHARAYEGAQPEPEDIGIVKNVLRGPAQRLLEVEIESADTASDGAPRTVLIP 187
Query: 145 FTKFAVLEVNLQENKILIDPIAAGLN 170
F + V V++ I++ P L+
Sbjct: 188 FVQAIVPIVDIDNEAIVVTPPEGLLD 213
>gi|332284665|ref|YP_004416576.1| 16S rRNA-processing protein RimM [Pusillimonas sp. T7-7]
gi|330428618|gb|AEC19952.1| 16S rRNA-processing protein RimM [Pusillimonas sp. T7-7]
Length = 191
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 34/184 (18%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRE----------LRILKMYR 55
+ I + +G+ G V + ++++ L + + L + + ++++
Sbjct: 2 ELGRIVSAYGVRGWVKVQPHSSSGEVLLKAATWWLKAPAPKTGLGALPLASAVKVVASRP 61
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---DRQ 112
+ +A + + A L+ ++ R DF +++E++ DL F D Q
Sbjct: 62 QGATVVAQLDAVSDRDDAEALKGHTVWVPRADFPAA--DDNEYYWVDLIGCRLFGEQDGQ 119
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTM--------------EK--TFLIPFTKFAVLEVNLQ 156
GQV V + GA ++L + K L+PF V V+L
Sbjct: 120 SALIGQVLDVIDNGAHAVLRVARAELDAEDNLVFLQTDKGKSIEVLVPFVAAHVHTVDLA 179
Query: 157 ENKI 160
E ++
Sbjct: 180 EQRL 183
>gi|309811487|ref|ZP_07705269.1| 16S rRNA processing protein RimM [Dermacoccus sp. Ellin185]
gi|308434538|gb|EFP58388.1| 16S rRNA processing protein RimM [Dermacoccus sp. Ellin185]
Length = 190
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKR 59
+D V++A IG HGL GEV + + ++P + L + N
Sbjct: 1 MDD-VVVARIGKAHGLKGEVTVQLHTDSPEQRFVPGETFETEPASRGPLTLRLARVHNGL 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F + +A LR K D+ E+D ++ DL + G+ G V
Sbjct: 60 HLLAFDEAPDRTAAEGLRG----IKLLAEADDLDEDDAWYEEDLLGFDVV-VAGEKVGVV 114
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
+ + +L + L+PF + V E++ +++ P L+ P
Sbjct: 115 KALESREVQDLLVVDGVEGYDILVPFVEEIVPEIDEDARVVVVTPPPGLLDLARPDAP-- 172
Query: 180 DCPLDSAGKKS 190
D P DSA ++
Sbjct: 173 DAPDDSAALEA 183
>gi|213861719|ref|ZP_03386189.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 139
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
Query: 30 NNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR 85
+ + Y + + +++++ N+ I G+D+ +A+ L + ++
Sbjct: 1 EDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDS 60
Query: 86 QDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KT 140
LEE +++ DL + +G G+V + G+ +L IK ++ K
Sbjct: 61 SQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKE 118
Query: 141 FLIPFTK-FAVLEVNLQENKI 160
L+PF + +V+L I
Sbjct: 119 RLVPFLDGQVIKKVDLATRTI 139
>gi|269795666|ref|YP_003315121.1| 16S rRNA processing protein RimM [Sanguibacter keddieii DSM 10542]
gi|269097851|gb|ACZ22287.1| 16S rRNA processing protein RimM [Sanguibacter keddieii DSM 10542]
Length = 214
Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIAT 63
+ +ATIG HGL GEV +D ++P L ++ +N R+
Sbjct: 3 LTVATIGRAHGLRGEVALDLRTDDPEARLADGQVLRTVPASAGPLTVVSTRIQNGRWHVA 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F+ + + +A + R ++L D EED ++ +L + + G G+V G+
Sbjct: 63 FAELGDRTAAEQARGIELVVD----VDASDEEDAWYPHELAGLRAELQDGTVVGEVVGLD 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
+ A +L ++ T L+PF + V V++ ++++DP L +
Sbjct: 119 HLPAYDMLVVRETDGTRTLVPFVRVMVPVVDVAGGRVVLDPPGGLLARDAVN 170
>gi|162148861|ref|YP_001603322.1| 16S rRNA-processing protein rimM [Gluconacetobacter diazotrophicus
PAl 5]
gi|189040842|sp|A9HS64|RIMM_GLUDA RecName: Full=Ribosome maturation factor rimM
gi|161787438|emb|CAP57033.1| putative 16S rRNA-processing protein rimM [Gluconacetobacter
diazotrophicus PAl 5]
Length = 188
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 4 LD-KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+D + +LM +G HG+ G V + SYA P DL Y ++++ ++ L+ +
Sbjct: 1 MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELR 60
Query: 63 TFSG--IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+G + +A + + +LY R E ++DEF+ TDL M+ + G+V
Sbjct: 61 DAAGQPLSGRDAAQAMVNRRLYVARTSLP--EPDQDEFYFTDLIGMDVRAQGTDAPLGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V+++GAG LE+ ++PFT+ V++ +I
Sbjct: 119 LVVHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRI 159
>gi|85860172|ref|YP_462374.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
gi|109893058|sp|Q2LVU6|RIMM_SYNAS RecName: Full=Ribosome maturation factor rimM
gi|85723263|gb|ABC78206.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
Length = 166
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 8/168 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRELRILKMYRKNKRF 60
K + I +HGL G + SY N DL+ V + R ++ K+ F
Sbjct: 2 KFFEIGEIVKSHGLKGRMKAKSYVENGEDLSSVHEAMIVKGKEEPRGYKVRKIVLHKTYF 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
ID + SA L + D L DE++ DL ++ +G++ G++
Sbjct: 62 FLELETIDTVESADSLVGSTVLIPEDD--RAALSGDEYYWRDLMGLQVVTEEGRFLGRIE 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ G+ + + L+P +L+++L + ++++ +
Sbjct: 120 SIFPTGSNDVYVCAGGS-REILLPAISDVILKIDLDKKEMVVRLLPGL 166
>gi|294787384|ref|ZP_06752637.1| 16S rRNA processing protein RimM [Parascardovia denticolens F0305]
gi|315227048|ref|ZP_07868835.1| 16S rRNA processing protein RimM [Parascardovia denticolens DSM
10105]
gi|294484740|gb|EFG32375.1| 16S rRNA processing protein RimM [Parascardovia denticolens F0305]
gi|315119498|gb|EFT82631.1| 16S rRNA processing protein RimM [Parascardovia denticolens DSM
10105]
Length = 216
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 45/215 (20%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKNK 58
M +L+ + IG GL GEV + ++ ++P L S D R + K +
Sbjct: 1 MNDDRELLRVCRIGRAQGLKGEVNVRAFTDDPGRRFSAGSRLISKDGRTFTVEKSRNFKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQD-----------------------------FK 89
R+I F + + +A L L LY + +
Sbjct: 61 RWILKFDQVPDRTAAEALNSLTLYIDAKAEADGFVPASGSASDVGLTSGPVTGPDAGSAE 120
Query: 90 DEELEEDEFFNTDLEEMETFD--------------RQGKYWGQVCGVYNFGAGSILEIKN 135
D+ ++D+++ L +E + G + ++L+I+
Sbjct: 121 DDPSQDDDWYPDQLIGLEILQVDDSAAAKAADYDGVEAHLIGHASDLDLDSPQTLLQIEL 180
Query: 136 TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
T + L+PF + V V+ E ILIDP A +
Sbjct: 181 TDGRKVLLPFVEELVPIVDPDEGYILIDPPAGLFD 215
>gi|126697136|ref|YP_001092022.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9301]
gi|166226462|sp|A3PF96|RIMM_PROM0 RecName: Full=Ribosome maturation factor rimM
gi|126544179|gb|ABO18421.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9301]
Length = 179
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKN 57
M+ ++ + + I + HG+NG+V + S ++ + L + +I +
Sbjct: 1 MINKNEWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKENEPPSKIELISGFK 60
Query: 58 K----RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ FI GI+ + A +L+ K+ + +L+++EF +L +E +
Sbjct: 61 QPGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLP--KLKKEEFHLLELINLEVKTLEN 118
Query: 114 ---KYWGQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
K G+V + N ++L I+ +K LIPF K V V+++ ++I+P L
Sbjct: 119 DELKTIGKVINLENEK-NNLLIIELFKNQKKVLIPFVKEIVPLVDIKNQFVIINPPNGLL 177
Query: 170 N 170
Sbjct: 178 E 178
>gi|108804228|ref|YP_644165.1| 16S rRNA processing protein RimM [Rubrobacter xylanophilus DSM
9941]
gi|122381804|sp|Q1AW75|RIMM_RUBXD RecName: Full=Ribosome maturation factor rimM
gi|108765471|gb|ABG04353.1| 16S rRNA processing protein RimM [Rubrobacter xylanophilus DSM
9941]
Length = 163
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M +L V++ TI HG+ G V + A L + R RIL+ R K F
Sbjct: 1 MGELADPVVIGTITAPHGVRGTVRVRP-AGEGRHLREGLSPLVGGRRRRILRARRTPKGF 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ G+ + A+ELR L R + E EDEF+ DL +E D +G G+V
Sbjct: 60 LVDLEGVPDRFRAAELRGEDLLLDRSELDAPE--EDEFYVADLVGLEAVDERGGALGEVI 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ A +L ++ +PFT+ V EV+ + + ++ P
Sbjct: 118 ETFPTPAHEVLVVRGEGG-LLYVPFTREHVPEVDPRAGRAVVRPPEE 163
>gi|255326595|ref|ZP_05367672.1| 16S rRNA processing protein RimM [Rothia mucilaginosa ATCC 25296]
gi|255296335|gb|EET75675.1| 16S rRNA processing protein RimM [Rothia mucilaginosa ATCC 25296]
Length = 220
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 45/222 (20%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDN-------------RELRILKM 53
V++A IG HG+ GEV + + + P R + +N EL +
Sbjct: 3 VVVARIGKPHGIRGEVTVQLFTDAPQERFARGEVLGIENFKPGSAAASVAPTGELTVAGA 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K + F + + A ELR +L + ++E +E+ F+ +L + +
Sbjct: 63 RWNKKILVVRFDEVTTRNQAEELRGSRLV---YEVPEDEGDEEGFYEQELVNLPVYLLAD 119
Query: 113 -------------GKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVL 151
GK G+V G+ +L IK + + +IPF + V
Sbjct: 120 VPEGESPVDNPAVGKPLGKVTGLQTMPVQDLLLIKLARSPRLASGAGEEIMIPFVEEIVP 179
Query: 152 EV-----NLQENKILIDPIAAGLNNTTMKNPQYDCPLDSAGK 188
EV + + +L+ P A ++ + AG+
Sbjct: 180 EVVPPTED-EPGFVLLTPPAGLIDLVEDAEQDSAQATEQAGE 220
>gi|167581078|ref|ZP_02373952.1| 16S rRNA-processing protein [Burkholderia thailandensis TXDOH]
Length = 221
Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 44 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 103
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +A +G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 104 SDAVVAHPAGSVDRDTALALRGFRVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 161
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V + + G SI+ ++ LIPF V V +I++D
Sbjct: 162 GKVADMIDNGVHSIMRVEYPATGKDGRPTTGERLIPFVGVYVKAVEQAAGRIVVD 216
>gi|83814853|ref|YP_445748.1| 16S rRNA processing protein RimM [Salinibacter ruber DSM 13855]
gi|294507643|ref|YP_003571701.1| 16S rRNA processing protein rimM [Salinibacter ruber M8]
gi|109893047|sp|Q2S233|RIMM_SALRD RecName: Full=Ribosome maturation factor rimM
gi|83756247|gb|ABC44360.1| 16S rRNA processing protein RimM [Salinibacter ruber DSM 13855]
gi|294343971|emb|CBH24749.1| 16S rRNA processing protein rimM [Salinibacter ruber M8]
Length = 198
Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 13/175 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSY-ANNPIDLNRYVLYSNDNRELRILKM---------YR 55
LV + I HGL+GE+ ID ++P R+++ +
Sbjct: 26 DLVKVGFIFRPHGLDGELKIDPSATDDPARFEVLPTVFVGPHPRRVVRHDIASVRYQKTK 85
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ I GI + A + + ++A LE+DE F DL +G
Sbjct: 86 RGITVILGLDGIVDRDDAEAVAKMDVFATEAALG---LEDDELFADDLVGWTVVTEEGAV 142
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V A + ++ + +IP ++E++ + +I++ PI ++
Sbjct: 143 QGTVADFMEMPAQDLFVVRTPEDTEAMIPAIDDFIIEIDEEAERIVVRPIDGLMD 197
>gi|325290411|ref|YP_004266592.1| 16S rRNA processing protein RimM [Syntrophobotulus glycolicus DSM
8271]
gi|324965812|gb|ADY56591.1| 16S rRNA processing protein RimM [Syntrophobotulus glycolicus DSM
8271]
Length = 169
Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 10/174 (5%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+ + + VL+ I G+NGE+ I ++ ++ + ++LK
Sbjct: 1 MDIKETVLVGEILKPQGINGELKIYPITDDAGRFKNLQSVFLAKGEVVTQYKVLKSRIDP 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K + G++ + LR ++ R L E ++ +LE M +
Sbjct: 61 KGMVFLELEGLETREQSERLRGFEVRITRDKVP--PLAEG-WYYFELEGMRVY-ENNILL 116
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V G+ + IK F IP K V +V++ ++ + L+
Sbjct: 117 GTLTQVLETGSNDVYLIKGAKG-EFYIPALKSVVQKVDVPAGRMDVILPEGLLD 169
>gi|262038555|ref|ZP_06011924.1| 16S rRNA processing protein RimM [Leptotrichia goodfellowii F0264]
gi|261747424|gb|EEY34894.1| 16S rRNA processing protein RimM [Leptotrichia goodfellowii F0264]
Length = 169
Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSNDNRELRILKMYRKN-KR 59
++ LV + TI TH L G V I+S + I + + + L + K+ R N K+
Sbjct: 1 MENLVNIGTITGTHHLTGNVKINSIFQETDLIIGEKVLLEKEDKKKILTVKKIKRLNEKK 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA F IDNI SA EL ++ +R E E+EF+ DL +E F+ GK G V
Sbjct: 61 VIAEFEEIDNIDSAKELNGFQIKIRRDLLP--EKNENEFYLKDLLGVEVFEGNGK-IGDV 117
Query: 120 CGVYNFGAGSILEIKNT-MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V A +IL I++T +K ++P V ++ NKI ++ I
Sbjct: 118 IDVMETAAHNILIIEDTVNKKEIMVPLVDEFVKNIDFANNKIEVELIEGM 167
>gi|258542791|ref|YP_003188224.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01]
gi|256633869|dbj|BAH99844.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01]
gi|256636928|dbj|BAI02897.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-03]
gi|256639981|dbj|BAI05943.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-07]
gi|256643037|dbj|BAI08992.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-22]
gi|256646092|dbj|BAI12040.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-26]
gi|256649145|dbj|BAI15086.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-32]
gi|256652132|dbj|BAI18066.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655189|dbj|BAI21116.1| ribosomal RNA small subunit 16S rRNA processing protein RimM
[Acetobacter pasteurianus IFO 3283-12]
Length = 180
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
L+LM +G HG+ G V + +YA NP L + +D L +
Sbjct: 3 SNLILMGVVGKPHGVRGLVRVRAYAENPQTLEQCGALQDDQGRKWFLSWRGADSVAELRD 62
Query: 65 SG---IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
+ + + +A L + +LY R + E EE F++ DL ME F G G+V
Sbjct: 63 ANGAPLADRDAAQALVNTRLYVPRAALPEPEEEE--FYHADLIGMEAF-ENGLSLGRVVM 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V+++GAG+ LE+ + L+PFT+ V EV+L++ I +
Sbjct: 120 VHDYGAGASLELSDGS----LVPFTQACVPEVHLKQRTITV 156
>gi|225874366|ref|YP_002755825.1| 16S rRNA processing protein RimM [Acidobacterium capsulatum ATCC
51196]
gi|254797738|sp|C1F3B3|RIMM_ACIC5 RecName: Full=Ribosome maturation factor rimM
gi|225791428|gb|ACO31518.1| 16S rRNA processing protein RimM [Acidobacterium capsulatum ATCC
51196]
Length = 213
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 12/194 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSND------NRELRILKMYRKNK 58
V +A I G GEV + + P R+V + D RE+ +
Sbjct: 6 WVTLAHIVRPQGRRGEVIAELLTDFPEKFAERRHVFLTRDAASDAAPREMELAGYRLAQN 65
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
R + F+GID+I +A LR L + + L++D + +DL + +D G+ G
Sbjct: 66 RVVLHFAGIDSIDAAEMLRGLDVVIPESE--RAPLDQDAAYISDLIGCDVWDEAAGQRVG 123
Query: 118 QVCGVYNFGAG-SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
V V + +L + + IPF K +++++ +I + L
Sbjct: 124 IVQDVDRQASHVDLLVVDCENGQRAEIPFVKAFLVKLDTTGKRITMRLPEGLLEINASTA 183
Query: 177 PQYDCPLDSAGKKS 190
+ K+
Sbjct: 184 TAREPRARRTRKRG 197
>gi|254526422|ref|ZP_05138474.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9202]
gi|221537846|gb|EEE40299.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9202]
Length = 179
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRKN 57
M+ +K + + I + HG+NG+V + S ++ + L D +I +
Sbjct: 1 MINKNKWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGIRWLQKEDEPPSKIELISGFK 60
Query: 58 K----RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ F+ I++ + A +L+ K+ K + +L+++EF +L ++ +
Sbjct: 61 QPGKETFVIKLKDINSRNHAEQLKKFKILVKTNELP--KLKKEEFHLLELINLKVNTLEN 118
Query: 114 KYW---GQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + N ++L IK +K IPF K V V+++ N I+I+P L
Sbjct: 119 DKLNTIGKVINLENEK-NNLLVIKLFKNQKEVFIPFVKEIVPIVDIKNNFIIINPPNGLL 177
Query: 170 N 170
+
Sbjct: 178 D 178
>gi|217420733|ref|ZP_03452238.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 576]
gi|217396145|gb|EEC36162.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 576]
Length = 230
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 53 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 112
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 113 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 170
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 171 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 225
>gi|256545496|ref|ZP_05472858.1| 16S rRNA processing protein RimM [Anaerococcus vaginalis ATCC
51170]
gi|256398892|gb|EEU12507.1| 16S rRNA processing protein RimM [Anaerococcus vaginalis ATCC
51170]
Length = 161
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A I TTHG+ G + I SY++N + D + I ++ I
Sbjct: 3 ITVAEILTTHGIKGNLKIKSYSDNEKRFEKGSKLLLDGNLVTIESSFKHKGSIIIKLKEY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
++I+ + +L + +D E+L + E++ DL ++ +++ + G + V G
Sbjct: 63 NDINEVEKFIGHELTIEDKDL--EKLNDGEYYLFDLIGLKVYEKN-QELGFIKDVI-TGV 118
Query: 128 --GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
I I+ K P V V+L+ KI ++
Sbjct: 119 YPNDIYVIE-KDGKEIYFPALNATVKNVDLENKKIEVE 155
>gi|254284062|ref|ZP_04959030.1| 16S rRNA processing protein RimM [gamma proteobacterium NOR51-B]
gi|219680265|gb|EED36614.1| 16S rRNA processing protein RimM [gamma proteobacterium NOR51-B]
Length = 183
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----------SNDNRELRILK 52
+ + +A+I +G+ G V + + +P L + +R + I
Sbjct: 1 MLDRLTVASIAGVYGIKGWVKLRLFVEDPDTLAQLEQLEISPPAKEPGGQGTSRPVVIDS 60
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ ++ + +A GID+ SA LR ++ R+ D + E++ L+ + + R+
Sbjct: 61 VRKQGRGTVAHIVGIDDRDSAEALRRYEITVPREGLPDP--ADGEYYWHQLQGLAVWCRE 118
Query: 113 GK----YWGQVCGVYNFGAGSILEIKNTME----KTFLIPFT-KFAVLEVNLQENKILID 163
G G+V + GA +L + T LIP V EV+L+ +I +D
Sbjct: 119 GSGDAVCVGRVAYLLETGANDVLVVAPTAGSIDDSERLIPLLFDEVVKEVDLERREIWVD 178
>gi|209545390|ref|YP_002277619.1| 16S rRNA processing protein RimM [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533067|gb|ACI53004.1| 16S rRNA processing protein RimM [Gluconacetobacter diazotrophicus
PAl 5]
Length = 188
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 4 LD-KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
+D + +LM +G HG+ G V + SYA P DL Y +++ ++ L+ +
Sbjct: 1 MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALIDEHGQVWSLRWRGDGIAELR 60
Query: 63 TFSG--IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+G + +A + + +LY R E ++DEF+ TDL M+ + G+V
Sbjct: 61 DAAGQALSGRDAAQAMVNRRLYVARTSLP--EPDQDEFYFTDLIGMDVRAQGTDAPLGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V+++GAG LE+ ++PFT+ V++ +I
Sbjct: 119 LVVHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRI 159
>gi|126440606|ref|YP_001059877.1| 16S rRNA-processing protein RimM [Burkholderia pseudomallei 668]
gi|209573553|sp|A3NC06|RIMM_BURP6 RecName: Full=Ribosome maturation factor rimM
gi|126220099|gb|ABN83605.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 668]
Length = 229
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 224
>gi|76810790|ref|YP_334346.1| 16S rRNA-processing protein RimM [Burkholderia pseudomallei 1710b]
gi|167720640|ref|ZP_02403876.1| 16S rRNA-processing protein [Burkholderia pseudomallei DM98]
gi|167816831|ref|ZP_02448511.1| 16S rRNA-processing protein [Burkholderia pseudomallei 91]
gi|167895323|ref|ZP_02482725.1| 16S rRNA-processing protein [Burkholderia pseudomallei 7894]
gi|167903709|ref|ZP_02490914.1| 16S rRNA-processing protein [Burkholderia pseudomallei NCTC 13177]
gi|167919950|ref|ZP_02507041.1| 16S rRNA-processing protein [Burkholderia pseudomallei BCC215]
gi|254191936|ref|ZP_04898436.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei Pasteur
52237]
gi|254260543|ref|ZP_04951597.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1710a]
gi|109893003|sp|Q3JQ07|RIMM_BURP1 RecName: Full=Ribosome maturation factor rimM
gi|209572669|sp|Q63S31|RIMM_BURPS RecName: Full=Ribosome maturation factor rimM
gi|76580243|gb|ABA49718.1| 16S rRNA processing protein [Burkholderia pseudomallei 1710b]
gi|157987758|gb|EDO95523.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei Pasteur
52237]
gi|254219232|gb|EET08616.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1710a]
Length = 229
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 224
>gi|312879514|ref|ZP_07739314.1| 16S rRNA processing protein RimM [Aminomonas paucivorans DSM 12260]
gi|310782805|gb|EFQ23203.1| 16S rRNA processing protein RimM [Aminomonas paucivorans DSM 12260]
Length = 188
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVL--------YSNDNRELRIL--KMY 54
+++ I HG+ G + + + P R V+ REL +L +
Sbjct: 14 IVVGRILGPHGIKGVLKLQPLTDYPERFRSMDRLVVEFPAPKVGVHRAPRELTVLGLDVL 73
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-G 113
F+ + A L+ + ++ LEED ++ DL + ++ G
Sbjct: 74 ESKNLFLVRTEEVHTCDEAESLKGGLVTVAPEE--RVPLEEDCYWIDDLLGLRVVEQDTG 131
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G++ V + G+ + ++ ++P V +V+L+ + + + +
Sbjct: 132 RDLGRLENVISTGSNDVYGVRTPDGALKMLPAIADVVRKVDLEAGTMTVVLLEGLWD 188
>gi|7769073|gb|AAF69244.1|AF173880_7 16S ribosomal RNA processing protein RIMM-like protein
[Acidithiobacillus ferrooxidans]
Length = 147
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 23 VYIDSYANNPIDLNRYVLY--SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLK 80
V + S+ + + Y + D R + + + +A + +++ A L +
Sbjct: 2 VKVFSFTESRDSIVDYSPWYLGPDRRPWVLEDGRMQGEGVVAKLAQVEDREQARALIGQE 61
Query: 81 LYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKT 140
+ R D EL EF+ + L + +R+G G V GA ++ I +
Sbjct: 62 IAVIRADLP--ELGAGEFYWSTLTGLRVLNREGIVLGTVSAFLETGANDVMVIDDGKGGE 119
Query: 141 FLIPFTKFAVLEVNLQENKILID 163
LIP++ A V+L +I++D
Sbjct: 120 LLIPWSAEASAGVDLPAGQIVVD 142
>gi|27904846|ref|NP_777972.1| 16S rRNA processing protein rimM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|29427604|sp|P59425|RIMM_BUCBP RecName: Full=Ribosome maturation factor rimM
gi|27904244|gb|AAO27077.1| 16S rRNA processing protein rimM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 180
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILK----MYRKNKRFIAT 63
+ +A G HG+ G + + SY ++ YV + + I K F+
Sbjct: 10 LTIAKFGAAHGILGWIRVFSYTEKKENIFDYVPWFIKKEQKIIKILPKYWKILKKTFLVK 69
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ ++N A +L + + ++ +L +E++ D+ + FD G+V +
Sbjct: 70 INDVNNRSMAQKLTNYDILINQKTLP--KLNNNEYYWKDIVDCTVFDTNFIKLGRVSELI 127
Query: 124 NFGAGSILEIKNTMEKTF-----LIPFTK-FAVLEVNLQENKILI 162
+ IL +K + K LIPF + EVN+ KI+I
Sbjct: 128 RTPSNDILVVKASNIKNISQNDMLIPFLHPQIISEVNINNKKIVI 172
>gi|124385768|ref|YP_001026908.1| 16S rRNA-processing protein RimM [Burkholderia mallei NCTC 10229]
gi|254176664|ref|ZP_04883321.1| 16S rRNA processing protein RimM [Burkholderia mallei ATCC 10399]
gi|254195579|ref|ZP_04902006.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei S13]
gi|209573550|sp|A2S4N9|RIMM_BURM9 RecName: Full=Ribosome maturation factor rimM
gi|124293788|gb|ABN03057.1| 16S rRNA processing protein RimM [Burkholderia mallei NCTC 10229]
gi|160697705|gb|EDP87675.1| 16S rRNA processing protein RimM [Burkholderia mallei ATCC 10399]
gi|169652325|gb|EDS85018.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei S13]
Length = 230
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 53 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 112
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 113 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 170
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 171 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 225
>gi|152149496|pdb|2QGG|A Chain A, X-Ray Structure Of The Protein Q6f7i0 From Acinetobacter
Calcoaceticus Amms 248. Northeast Structural Genomics
Consortium Target Asr73
Length = 182
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKR 59
+ + + + + +GLNG +++ S + Y+ + + + + + K
Sbjct: 8 PEDRIQIGQLRSAYGLNGWLWVYSNTEPXSNXFDYLPWYIETKAGWQTVDVKRWKPHGKG 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---- 115
+ + G+ + A L ++ + ++ DE++ +DL+ + +
Sbjct: 68 LVVSLKGVSDRTGAESLVASNIWIAKSQLPKADV--DEYYWSDLKGLTVLGLDDEEQEVN 125
Query: 116 WGQVCGVYNFGAGSILEIKNT----MEKTFLIPFTKFAVLEVNLQENKILID 163
GQ+ ++ GA + ++ T + IP+ K V V+L+ +I ++
Sbjct: 126 LGQIHELFETGANDVXVVRATPDSIDSEERXIPWHKDVVQRVDLEAGRIYVN 177
>gi|283457895|ref|YP_003362496.1| RimM protein, required for 16S rRNA processing [Rothia mucilaginosa
DY-18]
gi|283133911|dbj|BAI64676.1| RimM protein, required for 16S rRNA processing [Rothia mucilaginosa
DY-18]
Length = 224
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 45/204 (22%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNP-IDLNRYVLYSNDN-------------RELRILKM 53
V++A IG HG+ GEV + + + P R + +N EL +
Sbjct: 3 VVVARIGKPHGIRGEVTVQLFTDAPQERFARGEVLGIENFKPGSAAASVAPTGELTVAGA 62
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ- 112
K + F + + A ELR +L + ++E +E+ F+ +L + +
Sbjct: 63 RWNKKILVVRFDEVTTRNQAEELRGSRLV---YEVPEDEGDEEGFYEQELVNLPVYLLAD 119
Query: 113 -------------GKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVL 151
GK G+V G+ +L IK + + +IPF + V
Sbjct: 120 VPEGESPVDNPAVGKPLGKVTGLQTMPVQDLLLIKLARSPRLASGAGEEIMIPFVEEIVP 179
Query: 152 EV-----NLQENKILIDPIAAGLN 170
EV + + +L+ P A ++
Sbjct: 180 EVVPSTED-EPGFVLLTPPAGLID 202
>gi|121601492|ref|YP_993846.1| 16S rRNA-processing protein RimM [Burkholderia mallei SAVP1]
gi|126449187|ref|YP_001079804.1| 16S rRNA-processing protein RimM [Burkholderia mallei NCTC 10247]
gi|134277843|ref|ZP_01764558.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 305]
gi|166999762|ref|ZP_02265596.1| 16S rRNA processing protein RimM [Burkholderia mallei PRL-20]
gi|238561673|ref|ZP_00441639.2| 16S rRNA processing protein RimM [Burkholderia mallei GB8 horse 4]
gi|254203902|ref|ZP_04910262.1| 16S rRNA processing protein RimM [Burkholderia mallei FMH]
gi|254208882|ref|ZP_04915230.1| 16S rRNA processing protein RimM [Burkholderia mallei JHU]
gi|254295646|ref|ZP_04963104.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 406e]
gi|254360062|ref|ZP_04976332.1| 16S rRNA processing protein RimM [Burkholderia mallei 2002721280]
gi|209572668|sp|Q62M51|RIMM_BURMA RecName: Full=Ribosome maturation factor rimM
gi|209573549|sp|A3MHR8|RIMM_BURM7 RecName: Full=Ribosome maturation factor rimM
gi|209573551|sp|A1V6J3|RIMM_BURMS RecName: Full=Ribosome maturation factor rimM
gi|121230302|gb|ABM52820.1| 16S rRNA processing protein RimM [Burkholderia mallei SAVP1]
gi|126242057|gb|ABO05150.1| 16S rRNA processing protein RimM [Burkholderia mallei NCTC 10247]
gi|134251493|gb|EBA51572.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 305]
gi|147745414|gb|EDK52494.1| 16S rRNA processing protein RimM [Burkholderia mallei FMH]
gi|147750758|gb|EDK57827.1| 16S rRNA processing protein RimM [Burkholderia mallei JHU]
gi|148029302|gb|EDK87207.1| 16S rRNA processing protein RimM [Burkholderia mallei 2002721280]
gi|157805489|gb|EDO82659.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 406e]
gi|238524104|gb|EEP87539.1| 16S rRNA processing protein RimM [Burkholderia mallei GB8 horse 4]
gi|243064251|gb|EES46437.1| 16S rRNA processing protein RimM [Burkholderia mallei PRL-20]
Length = 229
Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 224
>gi|296274035|ref|YP_003656666.1| 16S rRNA processing protein RimM [Arcobacter nitrofigilis DSM 7299]
gi|296098209|gb|ADG94159.1| 16S rRNA processing protein RimM [Arcobacter nitrofigilis DSM 7299]
Length = 175
Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + +A +G + GLNGE+ I ++ P + ++ + + + +++ I
Sbjct: 1 MKNKIYVAKLGKSVGLNGEIKIFLDSDFPEQFKKGAIFITNKGNSLTVNSFNESRGTI-N 59
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F I+NI A +L + +L+ +++ K+ +L +D+FF DL + F+ + + G + +
Sbjct: 60 FVEINNIDDAKKLTNQQLFTSQENTKENCKLNKDQFFWFDLIDCMVFENE-ENLGTIIEI 118
Query: 123 YNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + G EIK KTFL+P+ K + V+++ KI A L N+
Sbjct: 119 HRYPLGDYFEIKTETSLVEKNLPKTFLLPYEKNYIKSVDIKSKKIEAKDAKAILENS 175
>gi|227497520|ref|ZP_03927748.1| 16S rRNA processing protein RimM [Actinomyces urogenitalis DSM
15434]
gi|226833023|gb|EEH65406.1| 16S rRNA processing protein RimM [Actinomyces urogenitalis DSM
15434]
Length = 188
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 12/187 (6%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFIA 62
L+ +A IG H L GEV ++ ++P D L + ++ +R+ A
Sbjct: 2 LLTVAIIGPAHALKGEVRLEIRTDDPEGRLAPGTTLPTDPQDAGPLTVSRLRFDGQRWFA 61
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-----RQGKY-- 115
F + +A LR ++L + + +E EE ++ +L + +G
Sbjct: 62 AFDQARDRTAAEALRGVRLLVDTDEDEVDEDEE-SWYAYELVGLTARLALHPGHEGTPQV 120
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V + A L ++ + +PF + V E++L+ + IDP
Sbjct: 121 LGEVVDLEPGIAQDRLVVRTPQGERVAVPFVEELVPEIDLEAGTVTIDPPGGLFPGLGQA 180
Query: 176 NPQYDCP 182
+
Sbjct: 181 EQTEETA 187
>gi|254181113|ref|ZP_04887711.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1655]
gi|184211652|gb|EDU08695.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1655]
Length = 230
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 53 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 112
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 113 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 170
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 171 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 225
>gi|325846129|ref|ZP_08169223.1| 16S rRNA processing protein RimM [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481722|gb|EGC84757.1| 16S rRNA processing protein RimM [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 161
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 7/158 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A I TTHG+ G + I S+++N + D + I ++ I
Sbjct: 3 ITVAEIITTHGIKGNLKIKSFSDNEKRFEKGSKLFLDGNLVTIESSFKHKGSIIIKLKDY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
D+I+ E +L + +D E+L E++ DL + +++ + G + V G
Sbjct: 63 DDINEVEEFIGHELTIEEEDL--EKLGNGEYYLFDLIGLRVYEKN-QELGFIKDVI-TGV 118
Query: 128 --GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
I I+ K P + V+L+ KI ++
Sbjct: 119 YPNDIYVIE-KDGKEVYFPALNATIKNVDLENKKIEVE 155
>gi|78188774|ref|YP_379112.1| 16S rRNA processing protein RimM [Chlorobium chlorochromatii CaD3]
gi|109893007|sp|Q3ASF6|RIMM_CHLCH RecName: Full=Ribosome maturation factor rimM
gi|78170973|gb|ABB28069.1| 16S rRNA processing protein RimM [Chlorobium chlorochromatii CaD3]
Length = 167
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 8/161 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
+L L I GL GEV ++ + P + + + +++ K
Sbjct: 2 ELFLTGKILKPRGLKGEVKVELITDFPHHFVKRKQFFVGVSPSSVVCMQVTKAALHGGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F GID A+ L L+ ++ + E+ + ++ M D GK +G V
Sbjct: 62 WLFFEGIDTFEQATTLVGFSLFITEEELAPQ--PENHVYRHEIVGMRVVDGNGKLFGTVT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
++N A + E++ KT L+P + V L I+
Sbjct: 120 DIFNMPAHDVYEVQ-VEGKTVLLPAIEAFVESFELASKTIV 159
>gi|119505222|ref|ZP_01627297.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2080]
gi|119458913|gb|EAW40013.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2080]
Length = 180
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSN------DNRELRILKMY 54
+ + +++A + HG+ G + I +P L VL S D+R +++ +
Sbjct: 1 MTESLVLAEVLGAHGIKGWLKIRPLVEDPTFLEGLEGLVLASGPKMRQADSRGVKVTNLR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ + ++ SG+D+ A LR + L D LE+ +F+ DLE + + +
Sbjct: 61 PQGRGWVIQVSGVDDRTQAEALRGMVLRGSAALLPD--LEDGDFYWRDLEGLRVWCEAPE 118
Query: 115 ---YWGQVCGVYNFGAGSILEIKNTME----KTFLIPF-TKFAVLEVNLQENKILI 162
G++ + GA +L ++ K LIP+ V V++ + +
Sbjct: 119 GLCLLGEIDHLLETGANDVLVVRPCEGSMDDKERLIPWLVDEVVHSVDMDAGTVRV 174
>gi|126656123|ref|ZP_01727507.1| 16S rRNA-processing protein [Cyanothece sp. CCY0110]
gi|126622403|gb|EAZ93109.1| 16S rRNA-processing protein [Cyanothece sp. CCY0110]
Length = 190
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 22/184 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRK 56
++ + + TI GL GE+ + S + P R++ N I K
Sbjct: 6 NQWLEIGTIVGARGLKGELKVLSSTDFPERFEIPGERWLQSPNHPSPQPIKLISGKSVAG 65
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKY 115
+I GI+ + A LR KL D + ELEE+E+ + L ++E + G+
Sbjct: 66 KNLYIVRLEGIETRNQAEILRGYKLLI--IDQELPELEEEEYHVSQLIDLEVYHHKTGEK 123
Query: 116 WGQVCGVYNFGAGSILEIK----------NTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G V ++ G +LEIK +KT LIPF V V++++N+I I+P
Sbjct: 124 IGIVVDLFTTG-HDLLEIKLINNSEKKDKENKDKTVLIPFVYEIVPVVDIEQNRIEINPP 182
Query: 166 AAGL 169
L
Sbjct: 183 KGLL 186
>gi|319779383|ref|YP_004130296.1| 16S rRNA processing protein RimM [Taylorella equigenitalis MCE9]
gi|317109407|gb|ADU92153.1| 16S rRNA processing protein RimM [Taylorella equigenitalis MCE9]
Length = 204
Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 30/185 (16%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYS--------NDNRELRILK 52
LV++ I +G+ G+V I ++ +D+ + + R +++
Sbjct: 15 PSDLVVVGRIADANGVRGKVKIFPHSKQNTQLLDIKNWYIQKFDLNDHPLGPVRTVKVKS 74
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+A+F GI++ A EL+ + A R +F DEF+ DL +
Sbjct: 75 KVMNGDVILASFDGIEDRDQALELKGYSILASRSEFPTT--NSDEFYWIDLIGCFVYSND 132
Query: 113 ---GKYWGQVCGVYNFGAGSILEIKNTMEK--------------TFLIPFTKFAVLEVNL 155
G V + GA ++L I + LIPF K V E+++
Sbjct: 133 PSNPTLLGIVKNLSESGAHTLLHIHQINSEDNLSPRLNSKGRPIEVLIPFVKDIVPEIDI 192
Query: 156 QENKI 160
+ KI
Sbjct: 193 ENKKI 197
>gi|126454495|ref|YP_001067163.1| 16S rRNA-processing protein [Burkholderia pseudomallei 1106a]
gi|167739627|ref|ZP_02412401.1| 16S rRNA-processing protein [Burkholderia pseudomallei 14]
gi|167825233|ref|ZP_02456704.1| 16S rRNA-processing protein [Burkholderia pseudomallei 9]
gi|167846737|ref|ZP_02472245.1| 16S rRNA-processing protein [Burkholderia pseudomallei B7210]
gi|167911958|ref|ZP_02499049.1| 16S rRNA-processing protein [Burkholderia pseudomallei 112]
gi|226197811|ref|ZP_03793385.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei
Pakistan 9]
gi|242315523|ref|ZP_04814539.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1106b]
gi|209573552|sp|A3NXU2|RIMM_BURP0 RecName: Full=Ribosome maturation factor rimM
gi|126228137|gb|ABN91677.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1106a]
gi|225929999|gb|EEH26012.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei
Pakistan 9]
gi|242138762|gb|EES25164.1| 16S rRNA processing protein RimM [Burkholderia pseudomallei 1106b]
Length = 229
Score = 130 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 111
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 112 GDTVVAHPGGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 169
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 224
>gi|53720100|ref|YP_109086.1| 16S rRNA-processing protein RimM [Burkholderia pseudomallei K96243]
gi|52210514|emb|CAH36497.1| 16S rRNA processing protein [Burkholderia pseudomallei K96243]
Length = 211
Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 34 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 93
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 94 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 151
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 152 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 206
>gi|224373529|ref|YP_002607901.1| 16S rRNA processing protein RimM [Nautilia profundicola AmH]
gi|223589785|gb|ACM93521.1| 16S rRNA processing protein RimM [Nautilia profundicola AmH]
Length = 173
Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ +A IG ++G+ G I + P + + +D +L I K+ KR + F
Sbjct: 2 NKIPIAKIGKSYGIKGWQKIHLLTDFPEQFKKDKTFPSDKIDLTIEKI--DLKRGLVKFK 59
Query: 66 GIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID A +L + LY+ + +D +L+E+E+F D+ + + G+ G+V +
Sbjct: 60 GIDTPEDAKKLTNRMLYSTEEQTKEDIKLKENEYFWFDIIGCDVY-EDGELLGRVKEIER 118
Query: 125 FGAGSILE-------IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
L I+ K FLI F K V +V+++ KI D L +
Sbjct: 119 ANEADYLVINTNPELIEKKYPKRFLIDF-KRHVKDVDVENKKIEADGAKVLLES 171
>gi|114777206|ref|ZP_01452217.1| 16S rRNA processing protein RimM [Mariprofundus ferrooxydans PV-1]
gi|114552351|gb|EAU54834.1| 16S rRNA processing protein RimM [Mariprofundus ferrooxydans PV-1]
Length = 182
Score = 130 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 13/174 (7%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKNKR 59
+ L+ + I HGL G + + S+ + Y + + + + + ++ KR
Sbjct: 4 ESLLHIGDILGAHGLKGALIVFSHTRPAQAIAGYSCWWIGKTAATAKAYPVRRCWQHGKR 63
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQ 118
+A G+ + A+ + LK++ E ++DE+ +L + G
Sbjct: 64 MLAELEGVSDCDQAALFKKLKVWVPID---VVETDDDEYLWEELIGCRVIKEGTLEPLGT 120
Query: 119 VCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + +GA L ++ + +LIPF + V +VNL + I +D
Sbjct: 121 VTALEEYGAQDNLLVQTPDDAAEPGEWLIPFIEDVVTDVNLDDCVITVDLPEGM 174
>gi|157414212|ref|YP_001485078.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9215]
gi|166985968|sp|A8G7B1|RIMM_PROM2 RecName: Full=Ribosome maturation factor rimM
gi|157388787|gb|ABV51492.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9215]
Length = 179
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKM---- 53
M+ +K + + I + HG+NG+V + S ++ + L D +I +
Sbjct: 1 MINKNKWLTVGLITSCHGINGQVKVKSLSDFEERFLKPGMRWLQKEDEPPSKIELISGFK 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ F+ I++ + A +L+ K+ K + +L+++EF +L ++ +
Sbjct: 61 QPGKQTFVIKLKDINSRNHAEQLKKFKILVKTNEIP--KLKKEEFHLLELINLKVNTLEN 118
Query: 114 KYW---GQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + N ++L IK +K IPF K V V+++ N I+I+P L
Sbjct: 119 DKLNTIGKVINLENEK-NNLLVIKLFKNQKEVFIPFVKEIVPIVDIKNNFIIINPPNGLL 177
Query: 170 N 170
Sbjct: 178 E 178
>gi|53724763|ref|YP_102217.1| 16S rRNA-processing protein RimM [Burkholderia mallei ATCC 23344]
gi|52428186|gb|AAU48779.1| 16S rRNA processing protein RimM [Burkholderia mallei ATCC 23344]
Length = 211
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNREL-RILKMYRK 56
D V + + +GL G V + ++A + + L R+ R+ +
Sbjct: 34 PDDAVEVGAVVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLH 93
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+A G + +A LR +++ +R DF L DEF+ DL ++ + G
Sbjct: 94 GDTVVAHPDGSVDRDTALALRGARVFVRRGDFPA--LAADEFYWVDLIGLDVVNEAGVAL 151
Query: 117 GQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G++ + + G SI+ ++ LIPF V V ++++D
Sbjct: 152 GKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 206
>gi|218904971|ref|YP_002452805.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
gi|218537285|gb|ACK89683.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
Length = 106
Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
TF G N++ + + L EL E E++ ++ +G+ G +
Sbjct: 1 MTFEGYGNVNEVEQFKGSLLKVPEDQL--GELAEGEYYYHEIIGCNVVTEEGEALGTIKE 58
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + GA + IK + LIP+ VL+VN++ + I + L
Sbjct: 59 VLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL 106
>gi|282897420|ref|ZP_06305422.1| 16S rRNA processing protein RimM [Raphidiopsis brookii D9]
gi|281198072|gb|EFA72966.1| 16S rRNA processing protein RimM [Raphidiopsis brookii D9]
Length = 164
Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 19/163 (11%)
Query: 23 VYIDSYANNPIDLN----RYVLYSNDNRELRIL----KMYRKNKRFIATFSGIDNIHSAS 74
+ + + P R++L + + + ++ GI + ++A
Sbjct: 1 MRVYPQTDFPERFEEPGTRWLLLPGEPSPQPVQLLHGRYVEGKNLYVIKLHGIGDRNAAE 60
Query: 75 ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAGSILEI 133
LR+ +L+ D EL EF DL + F ++ G+ G V + G +LE+
Sbjct: 61 NLREGRLFVPISD--RVELGPGEFHVIDLIGLPVFMQESGERIGDVTDILPSG-HDLLEV 117
Query: 134 KNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
K KT LIPF V V+L +I I P L
Sbjct: 118 KCDPSWNRNLGGKTVLIPFVMEIVPVVDLANRRIEITPPPGLL 160
>gi|313901974|ref|ZP_07835390.1| 16S rRNA processing protein RimM [Thermaerobacter subterraneus DSM
13965]
gi|313467763|gb|EFR63261.1| 16S rRNA processing protein RimM [Thermaerobacter subterraneus DSM
13965]
Length = 147
Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 29 ANNPIDLN---RYVLYSNDNRELR---ILKMYRKNKRFIATFSGIDNIHSASELRDLKLY 82
+++P L ++ D LR + + + +G + +A LR +L
Sbjct: 2 SDDPRRLQPGLEVLVAPPDGGPLRADRVEWARPHGRFWRVKLAGCPDRTAAEALRGGRLQ 61
Query: 83 AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL 142
L ++ L ++ D G+ GQV V + A ++ ++ + FL
Sbjct: 62 VPEDQVP--PLPPGRYYVFQLVGLDVVDSGGRKVGQVRDVLRYPANDVIVVEGDGGREFL 119
Query: 143 IPFTKFAVLEVNLQENKILIDPIAAGLN 170
IP + AV V+L+ ++++ + L+
Sbjct: 120 IPAIRQAVEAVDLERGRLVLGDLPGLLD 147
>gi|220917153|ref|YP_002492457.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955007|gb|ACL65391.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-1]
Length = 164
Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 7/166 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFIATF 64
LV + + GL G + + L R VL E R+L+ + + +
Sbjct: 3 LVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAVGQAERRVLEARPQGRLWAVRI 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + A L ++ A R+ E E + DLE + QG+ G V G+
Sbjct: 63 DGVADRTGAEALVGAEVLAPREAL--GEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLME 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L ++ L+P + EV+ ++++DP L
Sbjct: 121 TGAVDVLVVQGARG-ELLVPLAPYV--EVDRAAGRVVVDPPEGLLE 163
>gi|33862161|ref|NP_893722.1| 16S rRNA-processing protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|48474356|sp|Q7UZQ3|RIMM_PROMP RecName: Full=Ribosome maturation factor rimM
gi|33634379|emb|CAE20064.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 179
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKN 57
M+ ++ +++ I + G+NG++ I S ++ + + + + +
Sbjct: 1 MINHNEWLIVGLITSPQGINGKIKIKSLSDFEERFTKPGKRWIQKGNETPIEFELTHGFK 60
Query: 58 K----RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
K FI TF GI+N A L+ K+ K +L E+ T+L + +
Sbjct: 61 KPGKESFIITFKGINNRTQAENLKGQKILVKVDAIP--KLSHGEYHLTELINLNVKISEN 118
Query: 114 KYW---GQVCGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + N ++L I+ K LIPF K V V++++N IL+ P + L
Sbjct: 119 NQLHIIGKVINLSNEK-NNLLVIQLLKNNKEVLIPFVKEIVPIVDIKKNFILLTPPSGLL 177
Query: 170 N 170
Sbjct: 178 E 178
>gi|212695493|ref|ZP_03303621.1| hypothetical protein ANHYDRO_00009 [Anaerococcus hydrogenalis DSM
7454]
gi|212677493|gb|EEB37100.1| hypothetical protein ANHYDRO_00009 [Anaerococcus hydrogenalis DSM
7454]
Length = 161
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 7/158 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A I TTHG+ G + I S+++N + D + I ++ I
Sbjct: 3 ITVAEIITTHGIKGNLKIKSFSDNEKRFEKGSKLFLDGNLVTIESSFKHKGSIIIKLKDY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
D+I+ + +L + +D E+L E++ DL ++ +++ + G + V G
Sbjct: 63 DDINEVEKFIGHELTIEDKDL--EKLNNGEYYLFDLVGLKVYEKN-QELGFIKDVI-TGV 118
Query: 128 --GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
I I+ K P + V+L+ KI ++
Sbjct: 119 YPNDIYVIE-KDGKEVYFPALNATIKNVDLENKKIEVE 155
>gi|294101556|ref|YP_003553414.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
gi|293616536|gb|ADE56690.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
Length = 176
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 11/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRELRILKMYRKN----- 57
LV + I HGL G + I + P +Y D + L +L +
Sbjct: 5 NLVTIGRIVGVHGLRGGIKIFPLTDFPQRFFTMKNLAVYGEDEKPLAVLTVQDMKFLDGK 64
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYW 116
+A + SA L+D + ++ LEE E++ DL M+ F++ G+Y
Sbjct: 65 GIIVAETRELQTPKSAESLKDCLIKITSEE--RYSLEEGEYWIDDLIGMKVFEKGSGRYL 122
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G V V+ G I + + K IP + +V++ + ++ I
Sbjct: 123 GMVHNVFFAGENDIYTVISDDGKEHFIPAVSEFIKKVDIDNRVMEVEMIEGL 174
>gi|224541333|ref|ZP_03681872.1| hypothetical protein CATMIT_00493 [Catenibacterium mitsuokai DSM
15897]
gi|224525770|gb|EEF94875.1| hypothetical protein CATMIT_00493 [Catenibacterium mitsuokai DSM
15897]
Length = 167
Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 11/172 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDNR--ELRILKMYRKNKRF 60
+LV + I T G+ G++ I S + ++L + I K Y
Sbjct: 2 ELVEIGKIINTFGIKGDLKIASSTDFGEQRFAPGSHILVKTPREYLDFEISKHYIHKGFD 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F G +I+ + + YA + L E + +D+ + E ++ G Y G+V
Sbjct: 62 MIAFKGFTDINEVEKYKGCICYAPKD---TSLLPEGMHYISDIVDCEVYN-NGTYIGKVT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
VY GA +I+ + + K +IP+ V +++ +I + I L+
Sbjct: 118 DVYQ-GAQAIIGV-DVNGKQVMIPYIDAFVKNKDIEHKRIDVSLIGGFLDED 167
>gi|197122371|ref|YP_002134322.1| 16S rRNA processing protein RimM [Anaeromyxobacter sp. K]
gi|196172220|gb|ACG73193.1| 16S rRNA processing protein RimM [Anaeromyxobacter sp. K]
Length = 164
Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 7/166 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSN--DNRELRILKMYRKNKRFIATF 64
LV + + GL G + + L R VL E ++L+ + + +
Sbjct: 3 LVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAAGQVERKVLEARPQGRLWAVRI 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + A L ++ A R+ E E + DLE + QG+ G V G+
Sbjct: 63 DGVADRTGAEALVGAEVLAPREAL--GEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLME 120
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L ++ L+P + EV+ ++++DP L
Sbjct: 121 TGAVDVLVVQGARG-ELLVPLAPYV--EVDRAAGRVVVDPPEGLLE 163
>gi|326382874|ref|ZP_08204564.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
gi|326198464|gb|EGD55648.1| 16S rRNA-processing protein RimM [Gordonia neofelifaecis NRRL
B-59395]
Length = 175
Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 12/172 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY---------SNDNRELRILKMYRKNK 58
+++ + THG+ GEV +D ++P D E +
Sbjct: 3 LVIGRVVKTHGIRGEVVVDIRTDDPADRFAVGTRLRGRAARNAGGGETEYEVTAARMHAG 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + + + + A LR D D + DEF++ +LE + G G
Sbjct: 63 RLLLSLADVRGREEADRLRGTLFVIDAADV-DSGDDPDEFYDHELEGLPVSTVDGVEVGV 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V V + G +L + T + L+PF + V V + I IDP +
Sbjct: 122 VKEVLHLPGGELLSVTTTDGREVLVPFVREIVPTVTREG--IEIDPPDGLIE 171
>gi|21673991|ref|NP_662056.1| 16S rRNA processing protein RimM [Chlorobium tepidum TLS]
gi|25453251|sp|Q8KD89|RIMM_CHLTE RecName: Full=Ribosome maturation factor rimM
gi|21647137|gb|AAM72398.1| 16S rRNA processing protein RimM [Chlorobium tepidum TLS]
Length = 167
Score = 128 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 8/160 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRKNKRFI 61
+L L + GL GE+ + + P Y+ + ++ LR ++ R ++ F
Sbjct: 2 ELFLTGVVLKPKGLKGELKVKPVTDFPESFLTRREYYIGKTPEDAVLRKVQSARFHQGFA 61
Query: 62 -ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F G + A L LY R + +D + +L ++ FD G++
Sbjct: 62 WLVFEGAGSREGAEALVGCGLYVTRDAL--VAMPDDRAYIHELIGLDVFDETEGRVGKIS 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V A + E+ K LIP + + E +L++ +
Sbjct: 120 DVLQMPAHDVYEVDTGDRK-VLIPAVEDFITETDLEKGMV 158
>gi|302380897|ref|ZP_07269359.1| 16S rRNA processing protein RimM [Finegoldia magna ACS-171-V-Col3]
gi|303234914|ref|ZP_07321539.1| 16S rRNA processing protein RimM [Finegoldia magna BVS033A4]
gi|209573743|sp|B0S046|RIMM_FINM2 RecName: Full=Ribosome maturation factor rimM
gi|302311275|gb|EFK93294.1| 16S rRNA processing protein RimM [Finegoldia magna ACS-171-V-Col3]
gi|302494032|gb|EFL53813.1| 16S rRNA processing protein RimM [Finegoldia magna BVS033A4]
Length = 162
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIAT 63
+ + +A + THG+ G + + +N + + ++ I
Sbjct: 2 EYIAVAEVLNTHGIKGCLKMRPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYID 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ++I+ + LY +D EL++ F+ DL ++ + G+Y G + V
Sbjct: 62 FEEFNDINEVLGFKKQYLYIDEKD--RYELKDGSFYIDDLIGLKAY-FNGEYIGDLVDVI 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + + IK EK F+IP K + +++L+ I + I
Sbjct: 119 SIYSNDVYVIK-NDEKEFMIPAVKEFIKKIDLENGLIDVVIIEGM 162
>gi|262195705|ref|YP_003266914.1| 16S rRNA processing protein RimM [Haliangium ochraceum DSM 14365]
gi|262079052|gb|ACY15021.1| 16S rRNA processing protein RimM [Haliangium ochraceum DSM 14365]
Length = 176
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR----- 59
+ + + + HG+ GE+ + ++ + L + + + + +
Sbjct: 6 SEFLEIGYVARPHGIRGELRVVTHEPSSSTLLSVSRMAIADAVYEVASVRAVSGGGSADG 65
Query: 60 -FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+ G+ + ++A LR + R + LE+DE F DL G +G
Sbjct: 66 AFLVRLRGLGDRNAAELLRGRPVGVARDELP---LEDDEVFLADLVGCAVVLEDGTAYGV 122
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + + G L I + E L+P VL+V+L+ ++++ P
Sbjct: 123 IAAI-DAGPQDRLVIHD-GEVERLLPLVSEFVLDVDLEAERVVVAPPEGL 170
>gi|303280539|ref|XP_003059562.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459398|gb|EEH56694.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 193
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 33/193 (17%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNREL---------RILKMYRK 56
I + HGL GEV + + + + +++ R + K+
Sbjct: 1 GAIVSAHGLRGEVRVMPFTDFVEERFFSPCTQWLEDEAQGRSASGEYNKPAGTLSKINIS 60
Query: 57 NKRF---------IATFSGIDNIHSASELRDLKLYAKRQDFK-----DEELEEDEFFNTD 102
R I G+++ ++A L ++Y + D +D+F+ +
Sbjct: 61 GGREVTTKGRNECIVKIRGVNDRNAAEALLGRRMYVLASERPSLREADVGDGDDDFYAQE 120
Query: 103 LEEMETFD-RQGKYWGQVCGVYNF-GAGSILEIKN---TMEKTFLIPFTKFAVLEVNLQE 157
L+ + G G+V V+ G +L+++ + +PF K V V++
Sbjct: 121 LQGLRVVLKEGGDEVGKVIDVFRGAGTHDLLKVERKTKPPGEFVYVPFVKDIVPTVDVPN 180
Query: 158 NKILIDPIAAGLN 170
+ I P L+
Sbjct: 181 GFLEITPPPGLLD 193
>gi|157738179|ref|YP_001490863.1| 16S rRNA processing protein [Arcobacter butzleri RM4018]
gi|172045654|sp|A8EW70|RIMM_ARCB4 RecName: Full=Ribosome maturation factor rimM
gi|157700033|gb|ABV68193.1| 16S rRNA processing protein [Arcobacter butzleri RM4018]
Length = 178
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 11/170 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ ++ V +A +G T GL G + + ++ P + V ++ NR L++ + + R +
Sbjct: 1 MSMNSNVYVAKLGKTVGLQGHLRLFIDSDFPEQFKKGVTFTT-NRNLQLKVLEYNSSREL 59
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F +++ A +L + +LYA + K+ +L ++EFF DL E F G V
Sbjct: 60 VKFENYEDVELAKKLTNQELYATIEQTKENCKLAKNEFFWFDLISCEVF-ENNLKLGTVK 118
Query: 121 GVYNFGAGSILEI-------KNTMEKTFLIPFT-KFAVLEVNLQENKILI 162
++ + LEI K + K FLIP +L ++++ +I +
Sbjct: 119 EIHRYPLNDYLEIITDSELVKKALPKNFLIPHIFDKFILNIDIENKRIDV 168
>gi|86158337|ref|YP_465122.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-C]
gi|109892997|sp|Q2IJ53|RIMM_ANADE RecName: Full=Ribosome maturation factor rimM
gi|85774848|gb|ABC81685.1| 16S rRNA processing protein RimM [Anaeromyxobacter dehalogenans
2CP-C]
Length = 163
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-ELRILKMYRKNKRFIATFS 65
LV + + GL G + + L R VL E ++L+ + + +
Sbjct: 3 LVRIGKVVRALGLKGHLGVAGSEGALGTLERVVLRHGAAEVERKVLEARPQGRLWAVRID 62
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L ++ A R++ E E + DLE + QG+ G V G+
Sbjct: 63 GVADRTGAEALVGAEVLAPREEL--GEAGEGRHYWGDLEGLPVVTVQGEALGTVTGLMET 120
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L ++ L+P + EV+ ++++DP L
Sbjct: 121 GAVDVLVVQGARG-ELLVPLAPYV--EVDRAAGRVVVDPPEGLLE 162
>gi|307718741|ref|YP_003874273.1| 16S rRNA processing protein RimM [Spirochaeta thermophila DSM 6192]
gi|306532466|gb|ADN02000.1| 16S rRNA processing protein RimM [Spirochaeta thermophila DSM 6192]
Length = 171
Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVL-YSNDNRELRILKMYRKNKR 59
+ + + I + HG NG + + S++ L R L Y RE + ++ +
Sbjct: 1 MKDRLAIGYIRSAHGTNGALRVHSFSGESEHFRKLERLTLRYRGIEREYEVEGVFGTHPT 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD--RQGKYW- 116
+ G+D +A L+ +++ R++ E E++ DLE E + +G +
Sbjct: 61 LLVKLKGVDTREAAQRLQGWEIWVPRENAAPCR--EGEYYIADLEGCEVYSRGEEGSVFH 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G + V +LE+ + +IPF V EV++ +I
Sbjct: 119 GTIVAVIEAPHTFLLEVALSGGGRAMIPFQDHFVGEVDILRRRI 162
>gi|257125792|ref|YP_003163906.1| 16S rRNA processing protein RimM [Leptotrichia buccalis C-1013-b]
gi|257049731|gb|ACV38915.1| 16S rRNA processing protein RimM [Leptotrichia buccalis C-1013-b]
Length = 169
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSND--NRELRILKMYRKNKR 59
++ L+ + TI TH L G V I+S N + R +L N+ + K+
Sbjct: 1 MENLINIGTIVGTHHLRGSVKINSIFENIEVIENERVLLEKNEKKKLLVVKKVKRLNEKK 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F GI+NI A EL K+ +R E E+EF+ DL +E F + G+V
Sbjct: 61 AILDFEGIENIDEAKELNGFKVKIRRDLLP--ERNENEFYIKDLFGIEVFSEN-EKIGEV 117
Query: 120 CGVYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V A +IL I++ +K ++P V +++ N+I + I
Sbjct: 118 VDVMETAAHNILIIEDIETKKEIMVPLIDEFVTKIDFPNNRIEVSLIDGM 167
>gi|126724933|ref|ZP_01740776.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2150]
gi|126706097|gb|EBA05187.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2150]
Length = 102
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
++ A L+ ++LYA R+ D L ++E+++ DL M D GK G+V V N G
Sbjct: 1 MNTKEQADALKGVRLYAPREALPD--LPDEEYYHADLIGMIVLDTGGKELGKVSDVMNHG 58
Query: 127 AGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILIDPIAAGL 169
A +LE++ K LIPFT+ V V++ +I+IDP L
Sbjct: 59 ADDLLEVRGKGIKDGALIPFTREIVPTVDMASGRIIIDPPEGLL 102
>gi|162452713|ref|YP_001615080.1| 16S rRNA processing protein [Sorangium cellulosum 'So ce 56']
gi|209573621|sp|A9F3N7|RIMM_SORC5 RecName: Full=Ribosome maturation factor rimM
gi|161163295|emb|CAN94600.1| 16S rRNA processing protein [Sorangium cellulosum 'So ce 56']
Length = 170
Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN------RYVLYSNDNRELRILKMYRKNKR 59
+ V +A + HG+ GE+ + Y N DL R L R+ +I+ +K
Sbjct: 4 RYVPVADVARPHGVQGELRLRLY-NEASDLLLTRPPIRLRLPDGSARDAKIVATRPVDKA 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +GID+ +A LR + R F L E EF+ D+E G G V
Sbjct: 63 LLVRIAGIDDRDAAEALRGATVCVPRDAFA--PLSEGEFYACDVEGARVMTPDGDLLGHV 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ ++ +L ++ + +P T+ V V+ + + + +
Sbjct: 121 RSLQSYPTCDVLVVERQGADSIEVPLTESFVSSVDAERQVVQLATLEGL 169
>gi|332535260|ref|ZP_08411062.1| 16S rRNA processing protein RimM [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035291|gb|EGI71795.1| 16S rRNA processing protein RimM [Pseudoalteromonas haloplanktis
ANT/505]
Length = 135
Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 42 SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNT 101
+ L ++ R NK FIA F+ I++ A ++ EL + EF+
Sbjct: 5 QGKWQSLEVVDWRRHNKGFIAKFAQINDRDEAMAYTHAEISMDAAHLP--ELPQGEFYWR 62
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME-----KTFLIPF-TKFAVLEVNL 155
DL M +G G V + G+ +L +K + LIPF T + EV
Sbjct: 63 DLIGMSVVTDKGYSLGIVDDLMETGSNDVLVVKANSKDAFGQAERLIPFLTDSVIKEVKY 122
Query: 156 QENKILIDPIAA 167
+I +D
Sbjct: 123 DAREITVDWDPG 134
>gi|148261143|ref|YP_001235270.1| 16S rRNA processing protein RimM [Acidiphilium cryptum JF-5]
gi|326404544|ref|YP_004284626.1| ribosome maturation factor RimM [Acidiphilium multivorum AIU301]
gi|172047775|sp|A5G0G9|RIMM_ACICJ RecName: Full=Ribosome maturation factor rimM
gi|146402824|gb|ABQ31351.1| 16S rRNA processing protein RimM [Acidiphilium cryptum JF-5]
gi|325051406|dbj|BAJ81744.1| ribosome maturation factor RimM [Acidiphilium multivorum AIU301]
Length = 169
Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 30/177 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
D+L+LM IG HG+ G V++ +Y+ +P L L R + +
Sbjct: 3 DRLILMGVIGRPHGVRGAVHVTTYSPDPEGLAELPLRDERGRRVGLAWTG---------- 52
Query: 65 SGIDNIHSAS--------------ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+GI + +L +L+LY +R D E +EDEF+ DL +
Sbjct: 53 AGIARVTIGEGDEAAAIADRDAAAKLTNLRLYVRRADLPPPE-DEDEFYFADLIGLHAVG 111
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK-ILIDPIA 166
G G + V++FGAG+ +E+ + L+PFT+ V E++L + +++ P+
Sbjct: 112 PDGAALGTIRAVHDFGAGASIELSDGS----LLPFTRAVVPEIDLPGGRAVVVRPVE 164
>gi|77919816|ref|YP_357631.1| 16S rRNA processing protein [Pelobacter carbinolicus DSM 2380]
gi|109893029|sp|Q3A2E6|RIMM_PELCD RecName: Full=Ribosome maturation factor rimM
gi|77545899|gb|ABA89461.1| 16S rRNA processing protein RimM [Pelobacter carbinolicus DSM 2380]
Length = 175
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYID-SYANNPI--DLNRYVLYSNDNRELRIL--KMYRKNKR 59
L+++ + THGL G++ I S + P+ +++ V L+ K
Sbjct: 6 SDLLILGVVIGTHGLRGDLKIRGSDQDFPLLSKMHQLVFLREGETVLKCARRKAGWYKGH 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +G ++ + L ++ +R D L E++ L+ M DR+ G +
Sbjct: 66 LLLQIAGYRDVRAVQHLVGCEVAVRRDDVPG--LPAGEYYWFQLKGMTAVDRRLGALGCL 123
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ A I I L+P K + +V+L+ N+IL D + T
Sbjct: 124 EDIFTTAAHDIYVINGDYG-EVLVPAVKAFIADVDLESNRILFDLPDGLVQET 175
>gi|297587485|ref|ZP_06946129.1| 16S rRNA processing protein RimM [Finegoldia magna ATCC 53516]
gi|297574174|gb|EFH92894.1| 16S rRNA processing protein RimM [Finegoldia magna ATCC 53516]
Length = 162
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 6/165 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIAT 63
+ + +A + THG+ G + + +N + + ++ I
Sbjct: 2 EYIAVAEVLNTHGIKGCLKMRPLTDNIERFDEDICYYLGDKKVKVNIQNYRMYKGFLYID 61
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ++I+ E + LY +D EL++ F+ DL ++ + G+Y G + V
Sbjct: 62 FEEFNDINEVLEFKKQFLYIDEKD--RYELKDGSFYIDDLIGLKAY-SNGEYIGDLVEVL 118
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + + IK EK F+IP K + +++L+ I + I
Sbjct: 119 SVYSNDVYVIK-NDEKEFMIPAVKEFIKKIDLENGLIDVVIIEGM 162
>gi|332525243|ref|ZP_08401416.1| 16S rRNA-processing protein RimM [Rubrivivax benzoatilyticus JA2]
gi|332108525|gb|EGJ09749.1| 16S rRNA-processing protein RimM [Rubrivivax benzoatilyticus JA2]
Length = 191
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNRE-------LRILKMYR 55
+ + + G+ G + + ++++P L R+ L ++ + LR+
Sbjct: 19 DAIEVGRVLGAWGVKGGIKVKPFSSDPQALFSSKRWFLEPSEAKPGHQVPPLLRVASARE 78
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +AT + + A L +++ R F +EDEF+ DL ++ +R
Sbjct: 79 QGDAVVATIHDLTDRDLAQALAGARIFIARSSFPTP--DEDEFYWVDLIGLDARNRADVV 136
Query: 116 WGQVCGVYNFGAGSILEIKNTMEK--TFLIPFTKFAVLEVNLQENKILID 163
G+V G+ G +L ++ EK LIPF V V+L + +D
Sbjct: 137 LGRVVGLVETGPHCVLRVQPADEKADEILIPFVAAYVDRVDLAGATVHVD 186
>gi|302851476|ref|XP_002957262.1| hypothetical protein VOLCADRAFT_98328 [Volvox carteri f.
nagariensis]
gi|300257512|gb|EFJ41760.1| hypothetical protein VOLCADRAFT_98328 [Volvox carteri f.
nagariensis]
Length = 2763
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 37/221 (16%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNR------------- 46
D+ V +A + HG+ GE+ ++ + P + R Y+L R
Sbjct: 93 DEYVQVAQVAGVHGVRGELRLELSTDQPRERFRAGKRLYLLPPYSARGKDSAGSGLQTLP 152
Query: 47 ----ELRILKMYRKNKR---FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFF 99
R KM + K ++ + + +LR +Y D + DEF+
Sbjct: 153 LIPVTARGAKMQPRGKGEEAWVVALEEVTSRTQVEQLRGYLVYCAAADRGPLR-DPDEFY 211
Query: 100 NTDLEEMETFDRQGK-YWGQVCGVYNF-GAGSILEIK-NTMEKTFL--------IPFTKF 148
TD+ + + G V VY G L +K E+ L IPF K
Sbjct: 212 VTDIIGCTVIHQATRSMVGLVVDVYGGMGTHDTLRVKLRANEEDVLKSRIRYCMIPFAKA 271
Query: 149 AVLEVNLQENKILIDPIAAGLNNTTMKNPQYDCPLDSAGKK 189
++L + + P L+ T + + ++ KK
Sbjct: 272 ICPVLDLTNRTLEVAPPEGLLDLVTEEKLKKPLSDEAKAKK 312
>gi|254458776|ref|ZP_05072200.1| 16S rRNA processing protein RimM [Campylobacterales bacterium GD 1]
gi|207084542|gb|EDZ61830.1| 16S rRNA processing protein RimM [Campylobacterales bacterium GD 1]
Length = 180
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
++ + +ATIG T G+ G++ + + P + + I ++R +
Sbjct: 7 EQRLHIATIGKTVGIKGDLKFHIHCDFPEQFQDNSTFLTNKNN-TITLSDVNHERSLIKI 65
Query: 65 SGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+GI+ I A + ++KLY R++ K+ L + EFF DLE+ E F GK G V V
Sbjct: 66 AGINTIEDAKKFTNIKLYTTREETRKNCHLNDGEFFWFDLEDCEVF-EDGKLLGVVNEVE 124
Query: 124 NFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ L +K E K+FLIPF K +L ++ + I +D L
Sbjct: 125 RITISNYLNVKTNEELVKSGSAKSFLIPFHKPFILNTDIDKKIITVDGAMDILE 178
>gi|257066789|ref|YP_003153045.1| 16S rRNA processing protein RimM [Anaerococcus prevotii DSM 20548]
gi|256798669|gb|ACV29324.1| 16S rRNA processing protein RimM [Anaerococcus prevotii DSM 20548]
Length = 162
Score = 126 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A + TTHG+ G V + S+++ ++ + L I + + + F
Sbjct: 3 ITVAEVITTHGIKGNVKVKSFSDYEKRFDKGSKVYIGDELLTIEDSFDQKGLKVIKFVEY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG- 126
++I+ + +L + + +D EL+EDEF+ L ++T+ G+ G+V V +
Sbjct: 63 NDINDSLKLVGKDITIEEEDL--GELKEDEFYIYKLIGLDTY-SNGQKVGKVKDVISGVY 119
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ I+ T K L+P K + V++ NKI +D
Sbjct: 120 PNDVYVIETTDNKEILLPALKTVIKNVDIANNKIEVD 156
>gi|315185658|gb|EFU19426.1| 16S rRNA processing protein RimM [Spirochaeta thermophila DSM 6578]
Length = 171
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVL-YSNDNRELRILKMYRKNKR 59
+ + + I + HG NG + + S++ L R L Y RE + ++ +
Sbjct: 1 MKDRLAIGYIRSAHGTNGALRVHSFSGESEHFRKLERLTLRYRGIEREYEVEGVFGTHPT 60
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD--RQGKYW- 116
+ G+D +A L+ +++ R+ E E++ DLE E + G +
Sbjct: 61 LLLKLKGVDTREAAQRLQGWEIWVSREKAAPCR--EGEYYIADLEGCEVYSRGEAGSVFH 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G + V +LE+ + +IPF V EV++ +I
Sbjct: 119 GTIVAVIEAPHAFLLEVALSGGGRAMIPFQDHFVGEVDILRRRI 162
>gi|167837424|ref|ZP_02464307.1| 16S rRNA-processing protein [Burkholderia thailandensis MSMB43]
Length = 233
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN------PIDLNRYVLYSNDNRE-----LRILK 52
D V + + +GL G + + ++A ++ + L R+ +R+ +
Sbjct: 52 PDDAVEVGAVVDAYGLKGWIKLAAHAGAGRGGDALLEARDWWLQKGVGRDAERKFVRVTQ 111
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+A +G + +A LR ++ +R DF L DEF+ DL ++ +
Sbjct: 112 AKLHGDTVVAHPAGSADRDAALALRSFHVFVRRGDFPA--LAADEFYWVDLIGLDVVNEA 169
Query: 113 GKYWGQVCGVYNFGAGSILEIK--------NTMEKTFLIPFTKFAVLEVNLQENKILID 163
G G+V + + G SI+ ++ LIPF V V ++++D
Sbjct: 170 GVALGKVADLIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVD 228
>gi|223039527|ref|ZP_03609815.1| 16S rRNA processing protein RimM [Campylobacter rectus RM3267]
gi|222879323|gb|EEF14416.1| 16S rRNA processing protein RimM [Campylobacter rectus RM3267]
Length = 175
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ +LV +A +G T GL G V + + + P + ++ + + ++K Y I
Sbjct: 1 MSELVEVALLGKTVGLKGFVRLHNRGDFPNQFKKNAIFYDGDGNELVVKNYNSANDTIV- 59
Query: 64 FSGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F G ++I SA L + +Y +++ K+ +L++ EFF D+ E + + G+V +
Sbjct: 60 FCGFEDIDSAKTLTNKTIYTTKEETRKNCKLKKGEFFYFDVIGCEIY-ENNQRLGEVEDI 118
Query: 123 YNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
GA + IK EK+F IP+ V +V+++ KI
Sbjct: 119 DEVGANHLFLIKTDGNLIAKGLEKSFYIPYIDVYVEKVDVENKKI 163
>gi|24215089|ref|NP_712570.1| 16S rRNA-processing protein RimM [Leptospira interrogans serovar
Lai str. 56601]
gi|45657430|ref|YP_001516.1| 16S rRNA-processing protein RimM [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|46397691|sp|Q8F3L3|RIMM_LEPIN RecName: Full=Ribosome maturation factor rimM
gi|56749631|sp|Q72S29|RIMM_LEPIC RecName: Full=Ribosome maturation factor rimM
gi|24196147|gb|AAN49588.1| RimM protein [Leptospira interrogans serovar Lai str. 56601]
gi|45600669|gb|AAS70153.1| 16S rRNA processing protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 176
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSND----NRELRILKM 53
M K + + + +G G+ G + ++ +L L D +E+ +L++
Sbjct: 1 MTK--EWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEI 58
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+FI F G+ A++ L+ ++ E ++EF+ TDL ++ D G
Sbjct: 59 RPHGGKFIVRFEGVTTPEEAAKWIGGFLFLPQKLLPKIET-KNEFYITDLIGLQAIDESG 117
Query: 114 KYWG-QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
K ++ V + A IL + LIPF + V +++L++N I++
Sbjct: 118 KKLDWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDLEKNTIVL 167
>gi|315638649|ref|ZP_07893823.1| 16S rRNA processing protein RimM [Campylobacter upsaliensis JV21]
gi|315481273|gb|EFU71903.1| 16S rRNA processing protein RimM [Campylobacter upsaliensis JV21]
Length = 176
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKRFIA 62
+ K VL+A IG + GL G + + + ++ P + ++ D REL I + + +
Sbjct: 1 MSKFVLVAKIGRSVGLRGYLKLHNLSDFPSQFQKNLTFFTKDKRELAIKDYDKNRQSVL- 59
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F +++ A EL +L+LY + ++ +L++DEFF D+ E D Q GQV
Sbjct: 60 -FYTYESLEKAKELVNLELYQSIEKTRELCKLKKDEFFYFDIIGCEVRDEQ-IILGQVQD 117
Query: 122 VYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKIL 161
+ G G + EIK+ + K F IP+ +L++++++ +IL
Sbjct: 118 ILESGGGYLFEIKSDEKLTAQGFSKIFFIPYIDKYILQIDIEKKQIL 164
>gi|297569144|ref|YP_003690488.1| 16S rRNA processing protein RimM [Desulfurivibrio alkaliphilus
AHT2]
gi|296925059|gb|ADH85869.1| 16S rRNA processing protein RimM [Desulfurivibrio alkaliphilus
AHT2]
Length = 185
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 8/150 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPID---LNRYVLYSNDNRE---LRILKMYRKNKR 59
+LV + I G+ GE+ + A P+D L L +L + +
Sbjct: 12 ELVEIGRIVKPQGVKGELKVLPLAGAPLDFSGLEELFLLPASGGPPLAYPLLAVRSQGGA 71
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +G+D+ + A LRD + + L D+ + L + + +G+ G V
Sbjct: 72 LVIRLAGVDDRNQAEALRDRVVALAAGELP--PLAPDDIYWHQLAGLAAYTAEGRKVGLV 129
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFA 149
A +L I + + +L+P
Sbjct: 130 TDFMLTAAHPLLVIVDEQHREYLVPVHPEF 159
>gi|153004805|ref|YP_001379130.1| 16S rRNA processing protein RimM [Anaeromyxobacter sp. Fw109-5]
gi|166226422|sp|A7HBQ0|RIMM_ANADF RecName: Full=Ribosome maturation factor rimM
gi|152028378|gb|ABS26146.1| 16S rRNA processing protein RimM [Anaeromyxobacter sp. Fw109-5]
Length = 165
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 7/166 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL---RILKMYRKNKRFIATF 64
+ + + GL G + + + R L E +L+ + + +
Sbjct: 4 IRLGKVVRAVGLKGHLGVAGSEGALATVRRIALRREGEPEPPLQEVLEARPQGRLWAVRI 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+ + SA ++ A R+D E E + DLE + G G V G+Y
Sbjct: 64 EGVSDRTSAEAWVGAEVLALREDLP--EAGEARHYWADLEGLPVVTVAGAAIGTVTGLYE 121
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G +L + L+P + EV++ ++++DP L+
Sbjct: 122 TGGVDVLVVTTEEGGEKLVPLAPYV--EVDVAGRRVVVDPPEGLLD 165
>gi|163782681|ref|ZP_02177678.1| hypothetical protein HG1285_17395 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882254|gb|EDP75761.1| hypothetical protein HG1285_17395 [Hydrogenivirga sp. 128-5-R1-1]
Length = 164
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA--NNPIDLNRYVLYSNDNR--ELRILKMYRKNKRFI 61
V++ + T G+ GE+ + +A +L++ L + ++ ++ F+
Sbjct: 2 DYVVIGRVIDTFGVKGELKVIPFAPVEIFENLSKVYLKRSGGGYIPFKVERVKEHGNAFV 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
G D + A + R L+ ++ E EDEF+ +L ME + +G+ G+V
Sbjct: 62 IKLKGYDFLEEADQFRGAHLFLPEKELPPRE--EDEFYAYELVGMEVWTDKGRRLGRVKR 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V + G +L ++ ++ +IPF VL+V+ + ++ +
Sbjct: 120 VEDLGVYDMLILE---DEKTMIPFVGDIVLDVDREGKRVKV 157
>gi|302038371|ref|YP_003798693.1| ribosome maturation factor rimM [Candidatus Nitrospira defluvii]
gi|300606435|emb|CBK42768.1| Ribosome maturation factor RimM [Candidatus Nitrospira defluvii]
Length = 175
Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 10/174 (5%)
Query: 1 MVKLD--KLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNREL--RILKM 53
M LD +LV + I + G+ GE + S + P L + + + L R+
Sbjct: 1 MATLDQEELVTIGRIERSFGVRGEARVRSLTDVPGRFESLGQVTIVGPAGKTLDTRVTHA 60
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+I F +E R + R D L D+++ DL M D G
Sbjct: 61 RPGGPTWIVGFEAFTTPEQIAEFRGAFIQVPRGDSPA--LPVDQYYQCDLIGMVVQDEAG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
G + V + +++ K LIP K V+ V++ + +
Sbjct: 119 TVLGCLEEVVSMSGNQNFLVRH-DGKELLIPAAKQVVVAVDVPARIMTVRLPEG 171
>gi|291288181|ref|YP_003504997.1| 16S rRNA processing protein RimM [Denitrovibrio acetiphilus DSM
12809]
gi|290885341|gb|ADD69041.1| 16S rRNA processing protein RimM [Denitrovibrio acetiphilus DSM
12809]
Length = 169
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNKRF 60
KL+ + + THGL+GE+ + +P + + N L I M
Sbjct: 2 KLIRVGRLINTHGLDGELVLQVLTESPEVFDDMQYMMLAVKGNVQASLEIEYMQEYKGNI 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F+G+++I +A + + +++ + + + E + +LE FD+ G+ G +
Sbjct: 62 LVGFAGVEDIDTAKKYKGMEVVIPEEMLPEL---DGEIYWHELEGCPVFDKNGELVGALA 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
G I IK E +LI VLE+N++E K++ID I
Sbjct: 119 DYMEAGGADIFRIKCEDE-YYLISNNTDHVLEINVKEKKLVIDRI 162
>gi|284097825|ref|ZP_06385808.1| 16S rRNA-processing protein rimM [Candidatus Poribacteria sp.
WGA-A3]
gi|283830667|gb|EFC34794.1| 16S rRNA-processing protein rimM [Candidatus Poribacteria sp.
WGA-A3]
Length = 177
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 8/176 (4%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNP---IDLNRYVLYSNDNREL--RILKMYRKN 57
++ +V + + G+ G+ + S + P L L L + ++ N
Sbjct: 4 SMENMVTVGKLVKPFGVRGQARVLSLTDVPNRFETLKEVTLELPTGATLVTTVTDVHADN 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ++ F + R L + D E + +L + D G +G
Sbjct: 64 RSYLVRFGAFSTPEEVGDYRGAWLKIPQADVPPA--PEGHHYQFELIGLTVKDESGNVFG 121
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
+ V + ++ T K +L+P + + +++ + +++ P A + +
Sbjct: 122 TLEEVVAVPHQHLFVVRGT-HKEYLLPALRKWISSIDVAQGVMIVTPSAEWVGDDA 176
>gi|189346907|ref|YP_001943436.1| 16S rRNA processing protein RimM [Chlorobium limicola DSM 245]
gi|189341054|gb|ACD90457.1| 16S rRNA processing protein RimM [Chlorobium limicola DSM 245]
Length = 168
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 8/164 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNREL--RILKMYRKNK 58
+++ + T+ GL GEV + + P Y + + + +I++
Sbjct: 1 MNRYLT-GTVLKPKGLKGEVKVLPVTDYPERFLERKAYFVGKTGDSAVVCKIVRASLSRG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F GI++ A + + LY + QD + + + DL + D G+ G
Sbjct: 60 FAWLFFEGIESREQAEAICGMNLYIEEQDL--MAMPQGRAYLHDLIGLAVLDGSGREAGV 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V V A + E+ + + L+P + + E++ + +++
Sbjct: 118 VTDVLAMPAHEVYEVTMSGGRIVLLPAIEEFIEEIDTERRLMVV 161
>gi|315636322|ref|ZP_07891572.1| 16S rRNA processing protein RimM [Arcobacter butzleri JV22]
gi|315479411|gb|EFU70094.1| 16S rRNA processing protein RimM [Arcobacter butzleri JV22]
Length = 177
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A +G T GL G + + ++ P + V +S NR L++ + + R + F
Sbjct: 6 IYVAKLGKTVGLQGHLRLFIDSDFPEQFKKGVTFST-NRNLQLKVLEYNSSRELVKFENY 64
Query: 68 DNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+++ A +L + +LYA + K+ +L ++EFF DL E F G V ++ +
Sbjct: 65 EDVELAKKLTNQELYATIEQTKENCKLAKNEFFWFDLISCEVF-ENNLKLGIVKEIHRYP 123
Query: 127 AGSILEI-------KNTMEKTFLIPFT-KFAVLEVNLQENKILI 162
LEI K + K FLIP +L ++++ +I +
Sbjct: 124 LNDYLEIITDSELAKKALPKNFLIPHIFDKFILNIDIENKRIDV 167
>gi|257461311|ref|ZP_05626408.1| 16S rRNA processing protein RimM [Campylobacter gracilis RM3268]
gi|257441339|gb|EEV16485.1| 16S rRNA processing protein RimM [Campylobacter gracilis RM3268]
Length = 176
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIA 62
D L+ +A +G T GL G V I ++ P + Y + L IL F A
Sbjct: 2 PDDLLEVAKLGRTIGLKGAVKIFDRSDFPSQFKKGAKFYLRNGEILEILS--FSGANFSA 59
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F +++ +A+ L + LY ++D + +L++ EFF D+ +E + G G+V
Sbjct: 60 IFKNYESVEAAANLTNQILYRSKEDTRKFCKLQKGEFFYFDIIGLEIY-EDGAVLGRVRD 118
Query: 122 VYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
+ G+G + E++ K F IP+ V E++L E KI
Sbjct: 119 ISQIGSGYLFEVETDESLISQTLPKEFFIPYVDAYVKEISLSERKI 164
>gi|325971133|ref|YP_004247324.1| ribosome maturation factor rimM [Spirochaeta sp. Buddy]
gi|324026371|gb|ADY13130.1| Ribosome maturation factor rimM [Spirochaeta sp. Buddy]
Length = 168
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDNRE--LRILKMYRKNK 58
++KL+ AT+ + G+ GEV I + + L +L + D E L I
Sbjct: 1 MEKLLWTATVKSPFGIAGEVKIHPHNEDCSYLGKLKEVILCAKDGTEQLLTIQSFRMMGS 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F G D+ +A L L +R K L++ +F+ DL GK+ +
Sbjct: 61 QPIMKFVGFDDPETARALNGQHLMVERS--KAAPLKKGQFYVNDLIGCSMM-HDGKFIAE 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V + +LE++ ++ +++P+ K + EV+L+ I
Sbjct: 118 VVSSIDGAQAVLLEVRTAEDQLYMVPYLKEYIGEVDLENRTI 159
>gi|254424032|ref|ZP_05037750.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7335]
gi|196191521|gb|EDX86485.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7335]
Length = 229
Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 60/222 (27%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSN-DNRELRILKMY--RKNK 58
+L+ I HGLNG + + ++ P R++ + ++++
Sbjct: 9 DWLLIGRIVGAHGLNGHIKVYPESDFPERFIEPGERWIEKPGANPTPIQLISGRYLEGKN 68
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
++ +GID A +L KL D + EF +DL + + G
Sbjct: 69 IYLVKLAGIDFRDQAEDLSGAKLVVPVGD--RLPVAPGEFHVSDLIGLRVILQSDQTAIG 126
Query: 118 QVCGVYNFGAGSILEIKNTME--------------------------------------- 138
+ V+ G +LE+
Sbjct: 127 TITNVFTTG-HDLLEVSLPTAESTSDLDTASKRTEPERALSLESKHHPSLRSKAAQKLRR 185
Query: 139 ----------KTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
KT LIPF + V V++ ++ I P A +
Sbjct: 186 KARRAKKKQTKTLLIPFVEDIVPVVDVLAGRVEITPPAGLIE 227
>gi|162448032|ref|YP_001621164.1| 16S rRNA processing protein [Acholeplasma laidlawii PG-8A]
gi|209573539|sp|A9NHF8|RIMM_ACHLI RecName: Full=Ribosome maturation factor rimM
gi|161986139|gb|ABX81788.1| 16S rRNA processing protein [Acholeplasma laidlawii PG-8A]
Length = 159
Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
L + + THG+ GEV I + + + + + D + +I + + + +F G
Sbjct: 2 LYSIGKVVQTHGIKGEVKIKPHTDFDRFVKGFDVIIKDTK-YKIQTVREQKDLLLVSFVG 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ L+ ++Y + +LE D F L ++ +D+ G V + +
Sbjct: 61 YPTLTDVEHLKQQEIYTDEEPL---DLESDAFHLPKLIGLKVYDQHNYLIGTVLELVDVP 117
Query: 127 AGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G +L I ++ KT LIPF + V+ E I I+ I +
Sbjct: 118 QGYLLRILRDDNGKTVLIPFIDKFIKSVD--ETSIHIETIEGLI 159
>gi|116328321|ref|YP_798041.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331047|ref|YP_800765.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|122281203|sp|Q04SW3|RIMM_LEPBJ RecName: Full=Ribosome maturation factor rimM
gi|122283890|sp|Q050Y7|RIMM_LEPBL RecName: Full=Ribosome maturation factor rimM
gi|116121065|gb|ABJ79108.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124736|gb|ABJ76007.1| RimM protein, required for 16S rRNA processing [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 176
Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR--------ELRILKMYRK 56
+ + + +G G+ G + + ++ + + + + E+ +L++
Sbjct: 3 EGWISLGQLGKPFGIKGWLRFNVR-DSILTKVKLPVRLKLGKSDPNFPETEIILLEIRPH 61
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
N +F+ F GI A + L+ + E +DEF+ DL ++ D GK
Sbjct: 62 NGKFVVRFEGIATPEEAEKWVGGILFLPQNLLPKIET-KDEFYVRDLIGLQAIDEFGKSL 120
Query: 117 G-QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
++ + + A IL + E+ LIPF V E+NL++ I++
Sbjct: 121 NWKLTDIQDNPAHPILVFSKSEEEEILIPFLHVFVGELNLEKKTIVL 167
>gi|225851485|ref|YP_002731719.1| 16S rRNA processing protein RimM [Persephonella marina EX-H1]
gi|225645188|gb|ACO03374.1| 16S rRNA processing protein RimM [Persephonella marina EX-H1]
Length = 169
Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 5/167 (2%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM-YRKNKRFI 61
K + V+ I THG+ G++ I+ + N DL + + L + + K+ +
Sbjct: 4 KREDFVIAGKIHGTHGVRGDLKIEIFPPN-FDLPDVIYIKDKEGNFVPLYIEHFSKKKNL 62
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F G D+I A +++ Y + EL++D+F+ L +M+ GK G++
Sbjct: 63 IRFKGFDDIDKAKKIKHRYFYVESHKLP--ELDKDQFYEYQLIDMDVI-FNGKVIGKIIK 119
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + + L IK +K +PF K V EV+ + K+++D
Sbjct: 120 VDDRLPTAYLIIKCVDDKVRHLPFIKEFVKEVDTEGRKVVVDLPEGW 166
>gi|288818298|ref|YP_003432646.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
gi|288787698|dbj|BAI69445.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
gi|308751895|gb|ADO45378.1| 16S rRNA processing protein RimM [Hydrogenobacter thermophilus
TK-6]
Length = 170
Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDN--RELRILKMYRK 56
M + + V++ + T+GL GE+ ++SY L L +I +
Sbjct: 1 MHEESQFVVIGKVVDTYGLKGEIKMESYLEKKHWKKLKEVFLKKRGGDFVPFKIEGVKLH 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I FSG + + A + K++ + +DE++ LE ++ + GK+
Sbjct: 61 GRYVIVKFSGCEGVDQAKNYKSAKVFLPLHQLPKRK--KDEYYYFQLEGLQVYTESGKFL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V +LE+ + IPF V EV+++ KI +
Sbjct: 119 GKVTKVLEGKPYYLLEMDHGRG---YIPFIGQMVKEVDIEGKKIKV 161
>gi|134301360|ref|YP_001121328.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis WY96-3418]
gi|166226442|sp|A4IWA6|RIMM_FRATW RecName: Full=Ribosome maturation factor rimM
gi|134049137|gb|ABO46208.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 169
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ LNGE+ + S AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I+N +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|237756216|ref|ZP_04584780.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691626|gb|EEP60670.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 166
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K L+ + I THG+ G + + + N + +N + L I + RK
Sbjct: 1 MKK--DLIAIGKIHGTHGVKGNLKFEIFVKNFYLPEEIYIKDEENELQPLNIETIDRKKG 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F D A E+ +Y + +L EDEF+ L M + K G+
Sbjct: 59 --LIKFKNYDTPEKAKEISHKLIYVPEELLP--KLGEDEFYEFQLIGMNVYYND-KLIGK 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + + + + L IK T EKT +PF V +VN++ENK+ I P
Sbjct: 114 VEKIDDRLSQAYLIIKCTDEKTRHLPFINEFVKDVNVEENKMQITPPEGW 163
>gi|89257006|ref|YP_514368.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica LVS]
gi|115315366|ref|YP_764089.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica OSU18]
gi|156503206|ref|YP_001429271.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009386|ref|ZP_02274317.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica FSC200]
gi|254368259|ref|ZP_04984279.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica 257]
gi|254369856|ref|ZP_04985866.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica FSC022]
gi|290954474|ref|ZP_06559095.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica URFT1]
gi|295312079|ref|ZP_06802892.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
holarctica URFT1]
gi|109893017|sp|Q2A1N4|RIMM_FRATH RecName: Full=Ribosome maturation factor rimM
gi|122324647|sp|Q0BKD2|RIMM_FRATO RecName: Full=Ribosome maturation factor rimM
gi|166226440|sp|A7NEB2|RIMM_FRATF RecName: Full=Ribosome maturation factor rimM
gi|89144837|emb|CAJ80176.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica LVS]
gi|115130265|gb|ABI83452.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica OSU18]
gi|134254069|gb|EBA53163.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica 257]
gi|156253809|gb|ABU62315.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122815|gb|EDO66944.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
holarctica FSC022]
Length = 169
Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I+N +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|227486506|ref|ZP_03916822.1| possible 16S rRNA processing protein [Anaerococcus lactolyticus
ATCC 51172]
gi|227235509|gb|EEI85524.1| possible 16S rRNA processing protein [Anaerococcus lactolyticus
ATCC 51172]
Length = 161
Score = 123 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 7/158 (4%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ + I T G+ GEV + S ++N D+ + I + Y++ + F
Sbjct: 3 ISVGEIVKTQGIRGEVKVKSLSDNEDRFKIGAKLFIDDEIVTIKRAYKQKAMLVLGFEEY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
DNI+ + L +D +L EDE + DL ++ G+ G++ V G
Sbjct: 63 DNINDILKFVGKDLTIDEKDL--GKLAEDEVYIKDLMGLKVI-SNGQKVGEIVDVI-TGV 118
Query: 128 --GSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ IK L+P K + +++ +E I ++
Sbjct: 119 YPNDVYVIKT-DRSEVLLPAIKNTIKKIDTEEKIIEVE 155
>gi|157362993|ref|YP_001469760.1| 16S rRNA processing protein RimM [Thermotoga lettingae TMO]
gi|166985971|sp|A8F3G2|RIMM_THELT RecName: Full=Ribosome maturation factor rimM
gi|157313597|gb|ABV32696.1| 16S rRNA processing protein RimM [Thermotoga lettingae TMO]
Length = 168
Score = 123 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 9/171 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSND----NRELRILKMYRKN 57
+ V++ I THGL G V + N + V ND L+I ++ +
Sbjct: 1 MSDYVVIGKITKTHGLFGSVKVLPLTNALEVFQKLENVFIKNDAQSNTHRLQIEEIRKAG 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K F+ FSGID+ A ++ L L + D + +E++ +L +E D+ G + G
Sbjct: 61 KGFLIKFSGIDDEERARKIVGLSLAVRVTDLPKPK-SPNEYYYYELLNVEVLDQSGNFIG 119
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+V + G+ + +K LIP +++ + ++++
Sbjct: 120 RVEDIIQTGSNEVAVVK-NGSFEMLIPVIHDYIIKFE-KRKRLVVKVPEWI 168
>gi|289450536|ref|YP_003475455.1| 16S rRNA processing protein RimM [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289185083|gb|ADC91508.1| 16S rRNA processing protein RimM [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 192
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 7/170 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSNDNRELRILK--MYRKNKRF 60
+ +L A + HG+ G++ + + L D + +R + + K
Sbjct: 22 EFLLTAQLTAPHGIYGDMKYRILGDGNLSADGDAILYLLDRDEKMIRKVTTVWRGQGKTA 81
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
S +D+ +A LR L KR + L ++ DL D G G +
Sbjct: 82 TVHLSQVDSREAADALRMCYLAKKRSETP--PLPAGRYYVCDLIGCVVMDETGNILGHLK 139
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ A + ++ +K L P + +V+L I + L
Sbjct: 140 DILQNTAQDVYVVQRPRQKDLLFPLAPSTLQDVDLSRGIIKVKLPPGLLE 189
>gi|269101892|ref|ZP_06154589.1| 16S rRNA processing protein RimM [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161790|gb|EEZ40286.1| 16S rRNA processing protein RimM [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 132
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 42 SNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNT 101
+ + + R + + G+D A + ++ + + L +DEF+
Sbjct: 2 KGEWQAFNVESWKRHGQGMVVKLEGLDVREDAQIFTNAEVAVQAEQLPA--LSDDEFYWR 59
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNT-----MEKTFLIPFTKF-AVLEVNL 155
+L M +G G V + G+ +L +K +K LIPF + ++
Sbjct: 60 ELYGMSVVTTEGYDLGVVTEILETGSNDVLVVKANLKDAFGQKERLIPFLDEQVIKSIDR 119
Query: 156 QENKILIDPIAA 167
+I +D
Sbjct: 120 TAQRIEVDWDPG 131
>gi|194336564|ref|YP_002018358.1| 16S rRNA processing protein RimM [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309041|gb|ACF43741.1| 16S rRNA processing protein RimM [Pelodictyon phaeoclathratiforme
BU-1]
Length = 173
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYS--NDNRELRILKMYRKNKRF 60
+L L I GL GEV ++ + P +Y + ++L + K
Sbjct: 8 ELYLTGIILKPKGLKGEVKVELITDFPESFLSRKKYFAGKSVDSVQQLVVEKAVLGGGFA 67
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F GID++ A L KL+ + + D + ++ M+ D G V
Sbjct: 68 WLFFEGIDSMEKAEALVGWKLFINEEQLLPQ--PPDRAYLHEIIGMKVLDGSRSEVGTVT 125
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V A + E+ EK L+P V E NL+E ++I
Sbjct: 126 NVLAMPAHDVYEV-LVGEKKILLPAIDEFVEEFNLREQYMVI 166
>gi|119357325|ref|YP_911969.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides DSM
266]
gi|166226433|sp|A1BGL8|RIMM_CHLPD RecName: Full=Ribosome maturation factor rimM
gi|119354674|gb|ABL65545.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides DSM
266]
Length = 167
Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR--ELRILKMYRKNKRF 60
L L TI GL GEV + + P Y+ +D L +LK
Sbjct: 2 DLFLTGTILKPKGLKGEVKVLPVTDFPELFLSRKSYLAGKSDASVMPLNVLKASLSKGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F G+D + A +L + L+ + ++ + + +L M+ D G +
Sbjct: 62 WLFFEGVDTLEKAEKLSGMHLFVEEKELARQPT--GRAYLHELIGMKVLDGNRYEAGVIS 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ A + E++ + LIP + V E+++ +++
Sbjct: 120 DILKMPAHEVYEVQ-ANGRKILIPAVEEFVEEIDMAGRYMVV 160
>gi|88608189|ref|YP_506024.1| putative 16S rRNA processing protein RimM [Neorickettsia sennetsu
str. Miyayama]
gi|109893024|sp|Q2GES2|RIMM_NEOSM RecName: Full=Ribosome maturation factor rimM
gi|88600358|gb|ABD45826.1| putative 16S rRNA processing protein RimM [Neorickettsia sennetsu
str. Miyayama]
Length = 163
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
++ +V + +THG+ G V SY + + R F+ T
Sbjct: 1 MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLT 60
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
S + + A +L ++ L+ E++ DL + +D + + G V +Y
Sbjct: 61 LSRVGSACEAEKLVGFDVFLSESLLP--PLQVGEYYCKDLVGLAVYDLE-ECVGHVSMLY 117
Query: 124 NFG-AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI-LIDPIA 166
+FG A +LEI K +IPFT V +++L + ++ ++ P
Sbjct: 118 DFGAAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFPPE 162
>gi|320334987|ref|YP_004171698.1| ribosome maturation factor rimM [Deinococcus maricopensis DSM
21211]
gi|319756276|gb|ADV68033.1| Ribosome maturation factor rimM [Deinococcus maricopensis DSM
21211]
Length = 169
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 7/174 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN-RELRILKMYRKNKRFIA 62
+ +L+ + + G+ G V + + P L S + LR+ + +
Sbjct: 1 MAELIRVGHVLAPFGVQGAVKVYVIGD-PEQLLDLTRVSVEKLGWLRVTGVELHGPGVVM 59
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+G+ + +A LR+ +Y + L++ ++ +L + G+ G V V
Sbjct: 60 ALAGVADRTAAERLRNRGVYVDEAELP--PLDDGSYYYHELTGLPVVAPDGRTLGDVRDV 117
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
+ G +L +++ L+P V V + +I++D L + +
Sbjct: 118 MDGGHQDLLVVRHPRG-ESLVPLQAPYVEVV--RGERIVLDAPPGLLGDEPGDD 168
>gi|188996312|ref|YP_001930563.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium sp. YO3AOP1]
gi|209573623|sp|B2V7T6|RIMM_SULSY RecName: Full=Ribosome maturation factor rimM
gi|188931379|gb|ACD66009.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium sp. YO3AOP1]
Length = 166
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
M K L+ + I THG+ G + + + N + +N + L I + RK
Sbjct: 1 MKK--DLIAIGKIHGTHGVKGNLKFEIFVKNFYLPEEIYIKDEENELQPLNIETVDRKKG 58
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F D A E+ +Y +L EDEF+ L M+ + K G+
Sbjct: 59 --LIKFKNYDTPEKAKEISHRLIYVPEDLLP--KLGEDEFYEFQLIGMDVYYND-KLIGK 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V + + + + L IK T EKT +PF V +VN++ENK+ I P
Sbjct: 114 VEKIDDRLSQAYLIIKCTDEKTRHLPFINEFVKDVNVKENKMQITPPEGW 163
>gi|94969901|ref|YP_591949.1| 16S rRNA processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
gi|123079472|sp|Q1IMM5|RIMM_ACIBL RecName: Full=Ribosome maturation factor rimM
gi|94551951|gb|ABF41875.1| 16S rRNA processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
Length = 209
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 14/195 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRK 56
D + +A I T G GEV+ + + + P + + + REL + +
Sbjct: 7 TNTDDFITIARIQKTQGRVGEVFSELFTDFPELFEQRHHLYVLPEKGERRELELEDHWFH 66
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG--- 113
+ F GI+ I A +L ++ RQD +LEE + +DL E F+ G
Sbjct: 67 KGGVVLKFQGIETIDDAEKLLRSEVQIPRQD--RAQLEEGATYVSDLVGCELFEIHGSEA 124
Query: 114 KYWGQVCGV-YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN-N 171
+ G V V ++ G +L +K ++ LIP+ + + + + +I + L +
Sbjct: 125 RKVGVVADVDFSAGEAPLLVVK--GDREHLIPYVESFLKSTDFKAKRIEMVLPQGMLELD 182
Query: 172 TTMKNPQYDCPLDSA 186
+ + + A
Sbjct: 183 APLSKAEKERQKSEA 197
>gi|254374940|ref|ZP_04990421.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3548]
gi|151572659|gb|EDN38313.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3548]
Length = 169
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I++ +A + + + +Q +L EDE + DL + +G
Sbjct: 63 KVYIKLANINDADTAKKYVNALIGVPKQALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|86149933|ref|ZP_01068162.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596991|ref|ZP_01100227.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|218562351|ref|YP_002344130.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|14423901|sp|Q9PPJ5|RIMM_CAMJE RecName: Full=Ribosome maturation factor rimM
gi|85839751|gb|EAQ57011.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190680|gb|EAQ94653.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360057|emb|CAL34849.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|284925968|gb|ADC28320.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315926827|gb|EFV06201.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929640|gb|EFV08821.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 305]
Length = 179
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y N
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
V + GA + EI++ + K F IP+ V +++++ +I
Sbjct: 118 VVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQI 166
>gi|325479033|gb|EGC82134.1| 16S rRNA processing protein RimM [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 162
Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGI 67
+ +A + TTHG+ G V + S+++N ++ + L I + + + F
Sbjct: 3 ITVAEVITTHGIRGNVKVRSFSDNEKRFDKGSKVYIGDELLTIEDSFDQKGFKVLKFVEY 62
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG- 126
++I+ + +L + +D +L EF+ ++ ++ + G+ G+V + +
Sbjct: 63 NDINDSLKLVGKDITIDEKD--RGKLSNGEFYIYEMIGLDVY-SNGQKAGKVKDIISGVY 119
Query: 127 AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ I+ T + L+P K + V+++ KI +D
Sbjct: 120 PNDVYVIEKTDKTEVLLPALKTVITNVDIKNKKIEVD 156
>gi|94985585|ref|YP_604949.1| 16S rRNA processing protein RimM [Deinococcus geothermalis DSM
11300]
gi|172046726|sp|Q1IYA4|RIMM_DEIGD RecName: Full=Ribosome maturation factor rimM
gi|94555866|gb|ABF45780.1| 16S rRNA processing protein RimM [Deinococcus geothermalis DSM
11300]
Length = 178
Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 8/181 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M + HG+ G V + + L ++ LR+ +
Sbjct: 1 MNAPADTTRLGYFLGPHGVQGGVKVYVLGDPQQLLALPRVWVEGQGWLRVRRTEALAPGA 60
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ +GI + +A LR L +YA D LEE ++ +L + D G+ G+V
Sbjct: 61 VLHLAGITSREAAEALRGLNVYAADADLP--PLEEGSYYYHELRGLPVRDANGQPLGEVR 118
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK-----ILIDPIAAGLNNTTMK 175
V++ G +L + + + FL P VL + + + D A L +
Sbjct: 119 DVWDSGHQDLLVVSHAGGEAFL-PLQAPYVLVQTGESGRPQAIALTADAPAGLLGEGAEE 177
Query: 176 N 176
Sbjct: 178 A 178
>gi|110597446|ref|ZP_01385733.1| 16S rRNA processing protein RimM [Chlorobium ferrooxidans DSM
13031]
gi|110340990|gb|EAT59461.1| 16S rRNA processing protein RimM [Chlorobium ferrooxidans DSM
13031]
Length = 167
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKMYRKNKRF 60
+L L I GL GEV ++ + P Y L + K
Sbjct: 2 ELYLAGVILKPKGLAGEVKVEPVTDFPESFLSRKEYYAGRSADAVDRLTVHKASLGGGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F GID A L + LY + E+ + +L ++ DR G V
Sbjct: 62 WVFFDGIDTREKAEALAGVHLYVDEDQLLPQ--PENRAYIHELIGLKVLDRNRNEVGTVT 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ A + E++ ++ LIP + V E+++++ +++
Sbjct: 120 DILAMPAHEVYEVE-VGKRKILIPAIEEFVEEISVRDKFMVV 160
>gi|187931090|ref|YP_001891074.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
mediasiatica FSC147]
gi|238691537|sp|B2SFE3|RIMM_FRATM RecName: Full=Ribosome maturation factor rimM
gi|187711999|gb|ACD30296.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 169
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I+N +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANGVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|189500235|ref|YP_001959705.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides BS1]
gi|209573580|sp|B3EJ24|RIMM_CHLPB RecName: Full=Ribosome maturation factor rimM
gi|189495676|gb|ACE04224.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides BS1]
Length = 169
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 8/170 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPID-LNRYVLYSNDNRELRILKMYRK----NKR 59
++ L I GL GEV I + P L R + Y + E + + R+
Sbjct: 3 EEFYLAGKILKPKGLRGEVKIQPVTDFPDSYLERKIFYVGKSEEEAVRRTVRQAALRKGF 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
FSGID A E+ ++ + +L D + +L ++ + + + G +
Sbjct: 63 AYLLFSGIDTREKAEEIVGFSVFVRSDAL--IQLPPDRAYLHELRGLKVLNERHEELGII 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V A + EI+ +P + V E+++ E +++ L
Sbjct: 121 EDVLGMPAHDVYEIRAEGG-LVYVPAVEEFVEEISIDEGYMVLKRFEEFL 169
>gi|310779121|ref|YP_003967454.1| 16S rRNA processing protein RimM [Ilyobacter polytropus DSM 2926]
gi|309748444|gb|ADO83106.1| 16S rRNA processing protein RimM [Ilyobacter polytropus DSM 2926]
Length = 171
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 9/170 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL-----KMYRKNK 58
+ L+ +A I TH L G V + S+ ++ L + L+ + +
Sbjct: 1 MSDLLNVAKISGTHHLKGAVKVVSHMDDIELLTGNKVIVESPAGLKKVLTVTSAGFMMGN 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + F I N A+ L + KR + EDE+ +D+ ME + G+ G+
Sbjct: 61 KAVLEFEEITNKVDAAALAGSMVLIKRD---LIGIGEDEYLASDVIGMEVMELGGESLGK 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V ++ A I + N + +IP + + ++ + KI + I
Sbjct: 118 VTDIFETPAHEIYVV-NEGSEEIMIPGIEEFIENIDFENRKITVKLIEGM 166
>gi|208779458|ref|ZP_03246803.1| 16S rRNA processing protein RimM [Francisella novicida FTG]
gi|254373480|ref|ZP_04988968.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571206|gb|EDN36860.1| 16S rRNA processing protein rimM [Francisella novicida GA99-3549]
gi|208744419|gb|EDZ90718.1| 16S rRNA processing protein RimM [Francisella novicida FTG]
Length = 169
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I++ +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|153951260|ref|YP_001398343.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
doylei 269.97]
gi|166226431|sp|A7H4B3|RIMM_CAMJD RecName: Full=Ribosome maturation factor rimM
gi|152938706|gb|ABS43447.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
doylei 269.97]
Length = 179
Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y +
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNASNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
V + GA + EI++ + K F IP+ V +++++ +I
Sbjct: 118 VVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQI 166
>gi|57237014|ref|YP_178816.1| 16S rRNA processing protein RimM [Campylobacter jejuni RM1221]
gi|67461263|sp|Q5HV69|RIMM_CAMJR RecName: Full=Ribosome maturation factor rimM
gi|57165818|gb|AAW34597.1| 16S rRNA processing protein RimM [Campylobacter jejuni RM1221]
gi|315058175|gb|ADT72504.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni S3]
Length = 179
Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y N
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNANNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
V + GA + EI++ + K F IP+ V +++++ +I
Sbjct: 118 VVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLGKFVKNIDIEKRQI 166
>gi|289548960|ref|YP_003473948.1| 16S rRNA processing protein RimM [Thermocrinis albus DSM 14484]
gi|289182577|gb|ADC89821.1| 16S rRNA processing protein RimM [Thermocrinis albus DSM 14484]
Length = 173
Score = 121 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Query: 1 MVK---LDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLYSNDNR--ELRILKM 53
M+K +D+ V++ + + GL GE+ +D+Y A+ + + + + K+
Sbjct: 1 MMKEHEVDQFVIIGRVKDSFGLKGELKVDAYLPASRWKKIQKVFFKRKNGPYVPFEVEKV 60
Query: 54 YRKN-KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
N + GID A +L +Y R + +DEF+ +LE ++
Sbjct: 61 RSHNRGSVVLKLKGIDIKEEAEKLVGAYIYLPRGMVPPK--GKDEFYFFELEGLQVVTTS 118
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G G+V GV + +LEI IPF K V +VNL+E + +D
Sbjct: 119 GHRLGKVTGVIEGRSYFLLEIDRGRG---YIPFVKELVGDVNLEEGIVYVD 166
>gi|254796524|ref|YP_003081360.1| 16S rRNA processing protein RimM [Neorickettsia risticii str.
Illinois]
gi|254589761|gb|ACT69123.1| 16S rRNA processing protein RimM [Neorickettsia risticii str.
Illinois]
Length = 160
Score = 121 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 4/157 (2%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSG 66
+V + +THG+ G V SY + + R F+ T S
Sbjct: 1 MVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFGRGFPMFVLTLSR 60
Query: 67 IDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFG 126
+ + A +L L ++ L+ E++ DL + +D +G+ G V +YNFG
Sbjct: 61 VGSACEAEKLVGLDVFLSESLLP--PLQVGEYYCKDLVGLAVYDSEGR-VGHVSMLYNFG 117
Query: 127 -AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
A +LEI K +IPFT V +++L + ++ +
Sbjct: 118 AAAEVLEIVLLSGKKVMIPFTSACVTDIDLNKKRLAV 154
>gi|218508548|ref|ZP_03506426.1| 16S rRNA-processing protein [Rhizobium etli Brasil 5]
Length = 106
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 65/93 (69%)
Query: 83 AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL 142
+R + DEELE+DEF+ DLE +E D QG +G V GV++FGAG +LE+K ++ L
Sbjct: 1 IERDNLPDEELEDDEFYYADLEGLEARDDQGVSYGTVTGVFDFGAGDLLELKGPGKRPVL 60
Query: 143 IPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
IPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 61 IPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 93
>gi|332678856|gb|AEE87985.1| 16S rRNA processing protein RimM [Francisella cf. novicida Fx1]
Length = 169
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IGTT+ L+GE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGTTYKLDGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I++ +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|332184674|gb|AEE26928.1| 16S rRNA processing protein RimM [Francisella cf. novicida 3523]
Length = 169
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A +G T+ L+GE+ + A++ L Y + +N ++L+ + ++
Sbjct: 3 QNFVEIAKVGATYKLDGELNLYPLASSIETLLSYGDWYIQLPATNLWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I++ +A + + + +Q +L EDE + DL + +G
Sbjct: 63 KVYIKLANINDAETAKKYVNALIGVPKQALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 IVDIIETGANEVLVCKKES-SEYLIPYIKQYIISEDLDSKKIVVD 164
>gi|283953922|ref|ZP_06371451.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794527|gb|EFC33267.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 178
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + RE+ +K Y +
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTREILKIKHYNISSS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F +++ A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDVEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME------KTFLIPFTKFAVLEVNLQENKI 160
V + G+ + EI++ + KTF IP+ V +++++ +I
Sbjct: 118 VIDILETGSSYLFEIQSDEKWVKKYSKTFFIPYLDKFVKNIDIEKRQI 165
>gi|57242690|ref|ZP_00370627.1| 16S rRNA processing protein RimM, putative [Campylobacter
upsaliensis RM3195]
gi|57016619|gb|EAL53403.1| 16S rRNA processing protein RimM, putative [Campylobacter
upsaliensis RM3195]
Length = 176
Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 10/166 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ K VL+A IG + GL G + + + ++ P + + + ++ ++K Y KN++ +
Sbjct: 1 MSKFVLVAKIGRSVGLRGYLKLHNLSDFPSQFQKNLTFFTKDKRELVIKDYDKNRQSVL- 59
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F +++ L +L+LY + ++ +L++DEFF D+ E D Q GQV +
Sbjct: 60 FYTYESLEKTKNLVNLELYQSIEKTRELCKLKKDEFFYFDIIGCEVRDEQ-IILGQVQDI 118
Query: 123 YNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKIL 161
G G + EIK+ + K F IP+ +L++++++ +IL
Sbjct: 119 LESGGGYLFEIKSDEKLTVQGFSKIFFIPYIDKYILQIDIEKKQIL 164
>gi|118498129|ref|YP_899179.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida U112]
gi|194323356|ref|ZP_03057140.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida FTE]
gi|166226441|sp|A0Q860|RIMM_FRATN RecName: Full=Ribosome maturation factor rimM
gi|118424035|gb|ABK90425.1| 16S rRNA processing protein RimM [Francisella novicida U112]
gi|194322720|gb|EDX20200.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
novicida FTE]
Length = 169
Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ L+GE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLDGELNLYPLANSIETLISYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I++ +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINDADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + GA +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETGANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|219682306|ref|YP_002468690.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219622039|gb|ACL30195.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
Length = 176
Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +L+ +G ++G+ G + I S+ + Y+ + + ++I + FI
Sbjct: 11 QPLLIGKVGKSYGILGWINIFSFTEEKEKIFNYLPWFFFKEKNWTRIQIKNWKKYKNNFI 70
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I + S+ + + + L++++++ D+ + F+ Y G V
Sbjct: 71 VHIKDISDRSVVSQFTNADIIISKHTLPA--LKKNDYYWNDIINYKVFNIDQHYLGTVIN 128
Query: 122 VYNFGAGSILEIKNTME---KTFLIPFTK-FAVLEVNLQENKILI 162
+ IL +KN ++ K LIPF + VN + IL+
Sbjct: 129 LIRTRNNDILIVKNKLKIHQKNILIPFIDNKIIKNVNTDKKFILV 173
>gi|302754616|ref|XP_002960732.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
gi|300171671|gb|EFJ38271.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
Length = 604
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQ 118
++ T +D++ AS+ + KR + LEE EF+ DL M+ F + + G
Sbjct: 57 WLLTLKNVDSVEKASKYIGATMLVKRDERPA--LEEGEFYIPDLIGMDVFVQSSMENIGT 114
Query: 119 VCGVYNFGAGSILEIKNT------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ + NFGA +L ++ IPF + V V++++ ++++DP L
Sbjct: 115 IADMCNFGASDLLRVQRNPASSVGEGPLIWIPFVEAIVPVVDMEQRRVIVDPPEGLLELN 174
Query: 173 TM 174
T
Sbjct: 175 TP 176
>gi|319944226|ref|ZP_08018502.1| 16S rRNA processing protein RimM [Lautropia mirabilis ATCC 51599]
gi|319742521|gb|EFV94932.1| 16S rRNA processing protein RimM [Lautropia mirabilis ATCC 51599]
Length = 195
Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 39/190 (20%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLY-----SNDNRE---------- 47
+ + I +HG+ G + I+ YA + R+ L S D
Sbjct: 6 WIGVGRIRGSHGVQGALKIEPYAAASESVLRHARRWRLVEAVEPSPDGPPAGQVPAPRRA 65
Query: 48 ---------LRILKMYRKNKRFIATFSGID-----NIHSASELRDLKLYAKRQDFKDEEL 93
+R + + +A +D A L+ +++ R DF +
Sbjct: 66 ARPLALPQVVRRSRCRVQGDALVAELVLLDGQPPLTREQALALKGVEIQVDRADFPPTQ- 124
Query: 94 EEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
+DEF++ DL E +QG G V V + GA +L + + LIPF + V V
Sbjct: 125 -DDEFYHADLIGCEVIGQQGARLGTVVAVDDHGAQQVLRLDDG----MLIPFVEAIVQSV 179
Query: 154 NLQENKILID 163
++ +I D
Sbjct: 180 DIAARRIQAD 189
>gi|15616999|ref|NP_240212.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11387027|sp|P57475|RIMM_BUCAI RecName: Full=Ribosome maturation factor rimM
gi|25364919|pir||B84976 16s rRNA processing protein rimm [imported] - Buchnera sp. (strain
APS)
gi|10039064|dbj|BAB13098.1| 16s rRNA processing protein rimm [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 176
Score = 120 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +L+ +G ++G+ G + I S+ + Y+ + + ++I + FI
Sbjct: 11 QPLLIGKVGKSYGILGWINIFSFTEEQEKIFNYLPWFFFKEKNWTRIQIKNWKKYKNNFI 70
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I + S+ + + + L++++++ D+ + F+ Y G V
Sbjct: 71 VHIKDISDRSVVSQFTNADIIISKHTLPA--LKKNDYYWNDIINYKVFNIDQHYLGTVIN 128
Query: 122 VYNFGAGSILEIKNTME---KTFLIPFTK-FAVLEVNLQENKILI 162
+ IL +KN ++ K LIPF + VN + IL+
Sbjct: 129 LIRTRNNDILIVKNKLKIHQKNILIPFIDNKIIKNVNTDKKFILV 173
>gi|86151754|ref|ZP_01069968.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86153557|ref|ZP_01071761.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612604|ref|YP_001000408.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157414999|ref|YP_001482255.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81116]
gi|167005350|ref|ZP_02271108.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315124211|ref|YP_004066215.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|166226432|sp|A1VZ67|RIMM_CAMJJ RecName: Full=Ribosome maturation factor rimM
gi|172047104|sp|A8FLE1|RIMM_CAMJ8 RecName: Full=Ribosome maturation factor rimM
gi|85841383|gb|EAQ58631.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843283|gb|EAQ60494.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249538|gb|EAQ72498.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157385963|gb|ABV52278.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|307747637|gb|ADN90907.1| Ribosome maturation factor rimM [Campylobacter jejuni subsp. jejuni
M1]
gi|315017933|gb|ADT66026.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315931913|gb|EFV10868.1| 16S rRNA processing protein RimM [Campylobacter jejuni subsp.
jejuni 327]
Length = 179
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y +
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNASNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELINLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
V + GA + EI++ + K F IP+ V +++++ +I
Sbjct: 118 VIDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQI 166
>gi|219681751|ref|YP_002468137.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219624594|gb|ACL30749.1| 16S rRNA processing protein RimM [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 176
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ +L+ +G ++G+ G + I S+ + Y+ + + ++I + FI
Sbjct: 11 QPLLIGKVGKSYGILGWINIFSFTEEQEKIFNYLPWFFFKEKNWTRIQIKNWKKYKNNFI 70
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I + S+ + + + L++++++ D+ + F+ Y G V
Sbjct: 71 VHIKDISDRSVVSQFTNSDIIISKHTLPA--LKKNDYYWNDIINYKVFNIDQHYLGTVIN 128
Query: 122 VYNFGAGSILEIKNTME---KTFLIPFTK-FAVLEVNLQENKILI 162
+ IL +KN ++ K LIPF + VN + IL+
Sbjct: 129 LIRTRNNDILIVKNKLKIHQKNILIPFIDNKIIKNVNTDKKFILV 173
>gi|194476941|ref|YP_002049120.1| 16S rRNA-processing protein [Paulinella chromatophora]
gi|171191948|gb|ACB42910.1| 16S rRNA-processing protein [Paulinella chromatophora]
Length = 184
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 19/186 (10%)
Query: 1 MVKL-DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMY 54
M K DK + + I G+ GE+ I+ ++ P R +++ + +
Sbjct: 1 MTKTKDKWLAIGRIVAPQGVAGEMRINPSSDFPERFTRPGKRWLQNINSEPTPVFLKSGR 60
Query: 55 RKNKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET-FDR 111
R + ++ I++ S L L +D +L + EF DL +E +
Sbjct: 61 RLPGKSLYVIRLQDINDRDSVQTLVGQDLLVPFEDRP--KLAKGEFHLLDLLNLEVKLEP 118
Query: 112 QGKYWGQVCGVYNFGAGSILEIK-------NTMEKTFLIPFTKFAVLEVNLQENKILIDP 164
+ K G V + + G +LE++ N + LIP K V ++ L + + I P
Sbjct: 119 EFKTIGYVTNLISSG-NDLLEVELITNRNANKKKSRVLIPLVKSIVTKIELDQGWLSIIP 177
Query: 165 IAAGLN 170
L
Sbjct: 178 PPGLLE 183
>gi|283956121|ref|ZP_06373608.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792441|gb|EFC31223.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni 1336]
Length = 179
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y +
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEILKIKHYNASNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
V + GA + EI++ + K F +P+ V +++++ +I
Sbjct: 118 VVDILEIGASYLFEIQSDEKWVNKKYSKIFFVPYLDKFVKNIDIEKRQI 166
>gi|56707321|ref|YP_169217.1| 16S rRNA-processing protein RimM [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669791|ref|YP_666348.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC198]
gi|224456385|ref|ZP_03664858.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254369999|ref|ZP_04986006.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC033]
gi|254874157|ref|ZP_05246867.1| rimM, 16S rRNA-processing protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|67461299|sp|Q5NIC5|RIMM_FRATT RecName: Full=Ribosome maturation factor rimM
gi|123063602|sp|Q14JS8|RIMM_FRAT1 RecName: Full=Ribosome maturation factor rimM
gi|56603813|emb|CAG44784.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320124|emb|CAL08167.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis FSC198]
gi|151568244|gb|EDN33898.1| 16S rRNA processing protein RimM [Francisella tularensis subsp.
tularensis FSC033]
gi|254840156|gb|EET18592.1| rimM, 16S rRNA-processing protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158447|gb|ADA77838.1| 16S rRNA processing protein rimM [Francisella tularensis subsp.
tularensis NE061598]
Length = 169
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ LNGE+ + AN+ L Y + +N ++L+ + ++
Sbjct: 3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + I+N +A + + + ++ +L EDE + DL + +G
Sbjct: 63 KVYIKLANINNADTAKKYVNALIGVPKRALP--QLAEDEVYFKDLIGCSVKNINNDSFGV 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V + A +L K +LIP+ K ++ +L KI++D
Sbjct: 121 VVDIIETDANEVLVCK-EDNSEYLIPYVKQYIVSEDLNSKKIVVD 164
>gi|154147973|ref|YP_001406147.1| 16S rRNA processing protein RimM [Campylobacter hominis ATCC
BAA-381]
gi|166226430|sp|A7I0V6|RIMM_CAMHC RecName: Full=Ribosome maturation factor rimM
gi|153803982|gb|ABS50989.1| 16S rRNA processing protein RimM [Campylobacter hominis ATCC
BAA-381]
Length = 176
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKR 59
M+K D ++ +A +G T GL G + + + ++ P + Y D L IL
Sbjct: 1 MLK-DDMLEVALLGKTIGLKGAIKLHNRSDFPSQFKKGAKFYLTDGEILEILS--FNKTN 57
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F+A F +NI A++L + LY ++ K +L +DEFF ++ +E F+ + + G+
Sbjct: 58 FVAVFKNYENIECAAKLTNKILYQSKEITKKTCKLGKDEFFYFEILGLEVFENE-EKLGK 116
Query: 119 VCGVYNFG------AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
V ++ G A IK K F +P+T + +++++E KI
Sbjct: 117 VADIFEAGNFVFEIATDEKLIKKGFPKIFYLPYTDHFIDKISIEEGKI 164
>gi|149194106|ref|ZP_01871204.1| 16S rRNA processing protein RimM [Caminibacter mediatlanticus TB-2]
gi|149136059|gb|EDM24537.1| 16S rRNA processing protein RimM [Caminibacter mediatlanticus TB-2]
Length = 174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
K + +A +G ++G+ G I + P +S+D +L I K+ KR + F
Sbjct: 3 SKKIPIAKLGKSYGVKGWQKIHLLTDFPEQFKEGKTFSSDKTDLTIEKI--DLKRNLVKF 60
Query: 65 SGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
GID A ++ + LY ++ ++ +L+++E+F D+E E F GK G+V +
Sbjct: 61 KGIDTPEDAKKITNRILYTTEEETRENIKLKDNEYFWFDIEGCEVF-ENGKKLGRVKEIE 119
Query: 124 NFGAGSILE------IKNTMEKTFLIPFTKFAVLEVNLQENKI 160
++ IK K FLI F K V EV++ KI
Sbjct: 120 RADVDYLIINTDENLIKEGYPKRFLIDF-KRHVKEVDIDNKKI 161
>gi|291278681|ref|YP_003495516.1| 16S rRNA processing protein RimM [Deferribacter desulfuricans SSM1]
gi|290753383|dbj|BAI79760.1| 16S rRNA processing protein RimM [Deferribacter desulfuricans SSM1]
Length = 178
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY-----SNDNRELRILKMYRKN 57
K+D + + I +HGL+GEV + P + + + LR+ + + N
Sbjct: 8 KMD-YIKIGIIKNSHGLDGEVKVLPVTEYPELFETLEVLMLAKETEIVKALRVSSVRQHN 66
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ ++ F ID+I +A +L + EL+E+E++ +++ + FD + + G
Sbjct: 67 EFYLIKFENIDDIETAKKLSGYNIMYPANLLP--ELDENEYYWFEIKGFKVFDMENNFVG 124
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
++ G+ IK+ E FLI + VL+++ +I+I+
Sbjct: 125 ELEDYEETGSVEAFRIKSENE-YFLISNNPYHVLKIDKINKRIVIN 169
>gi|193212763|ref|YP_001998716.1| 16S rRNA processing protein RimM [Chlorobaculum parvum NCIB 8327]
gi|193086240|gb|ACF11516.1| 16S rRNA processing protein RimM [Chlorobaculum parvum NCIB 8327]
Length = 167
Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 8/163 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRIL-----KMYRKNKRF 60
+L L + GL GE+ + + P Y ++ +
Sbjct: 2 ELFLTGIVLKPKGLKGELKVQPVTDFPESFLTRREYYIGKSPEEVVVRKVRSAKFQQGFA 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F GI++ A +LY E + +D + DL +E D G +
Sbjct: 62 WLMFEGIESREEAEAAAGSRLYVTGDAL--EPMPDDRAYLHDLIGLEVVDEAEGRVGVIS 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V A + EI +T K L+P + + E++L + + +
Sbjct: 120 NVLQMPAQDVYEI-DTGGKKVLVPAVEEFITEIDLDKGIVTLR 161
>gi|225620955|ref|YP_002722213.1| putative RimM protein, required for 16S processing [Brachyspira
hyodysenteriae WA1]
gi|225215775|gb|ACN84509.1| putative RimM protein, required for 16S processing [Brachyspira
hyodysenteriae WA1]
Length = 168
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 7 LVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIA 62
++ A I HGL GEV + SY + L++ +N+ +L + +KNK F+
Sbjct: 1 MIFYAKITGLHGLKGEVEMAFTDKSYFTSLPVLSKNTPVIINNQTFTLLNVKKKNKSFVF 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
I+ I A +L L ++ L++D F+ +L + D +G++ V
Sbjct: 61 QLKDINTIDQAEKLIGLDIFIDSSHLPI--LDDDTFYEAELIGYKIIDTDNNVYGEITDV 118
Query: 123 YNFGAGSILEIKNTMEKTFL-IPFTKFAVLEVNLQENKILI 162
Y+ + + EIK + IPF K + + I I
Sbjct: 119 YSLPSNYVFEIKLKENNNIVSIPFVKAYFGDSDKINKTICI 159
>gi|145219741|ref|YP_001130450.1| 16S rRNA processing protein RimM [Prosthecochloris vibrioformis DSM
265]
gi|189040847|sp|A4SEN9|RIMM_PROVI RecName: Full=Ribosome maturation factor rimM
gi|145205905|gb|ABP36948.1| 16S rRNA processing protein RimM [Chlorobium phaeovibrioides DSM
265]
Length = 167
Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI-- 61
++ + TI GL GE+ + + P Y + ++ + K+
Sbjct: 1 MELWLT-GTILKPKGLKGELKVQPVTDFPDRFLSRTKYFAGRQPETVVPVNVKSATLSQG 59
Query: 62 ---ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F G+D+ A E+ + LY + ++ ++ + +LE M R G G
Sbjct: 60 FAWLFFEGVDSREKAQEMAGMHLYIEEKECAPR--PQNRAWLHELEGMRVKGRDGVEVGV 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + A + E++ T LIP + E++L+ I++
Sbjct: 118 LTAILPMPAHEVYEVRTGNG-TVLIPAIDEFIDEISLEGGYIVV 160
>gi|213021443|ref|ZP_03335890.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 114
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I G+D+ +A+ L + ++ LEE +++ DL + +G G+V
Sbjct: 2 LIIKLKGVDDRDAANLLTNCEIVVDSSQLPA--LEEGDYYWKDLMGCQVVTAEGYDLGKV 59
Query: 120 CGVYNFGAGSILEIKNTME-----KTFLIPFTK-FAVLEVNLQENKILIDPIAA 167
+ G+ +L IK ++ K L+PF + +V+L I +D
Sbjct: 60 IDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDPG 113
>gi|225848003|ref|YP_002728166.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643186|gb|ACN98236.1| 16S rRNA processing protein RimM [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 168
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 8/170 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---ELRILKMYRKNK 58
+K + +V+ + +THG+ G + ++ + N + + + L I + R K
Sbjct: 1 MKREDMVVAGKLHSTHGVKGNLKLELFHEKIRLPNIVYVEDEETKKLVPLEIEFIDRVKK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F G D A E+ +Y +++ +L +DE++ +E E + K G+
Sbjct: 61 --LIKFKGYDTPEKAKEISQKLIYIPQENLP--KLNKDEYYIFQIEGCEIVFKD-KIVGK 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
V V + L IK +K +PF V V+++ KI+I P
Sbjct: 116 VEKVDDRLPQVYLIIKCKDDKIRYLPFINQFVKTVDVENKKIIITPPEGW 165
>gi|241667832|ref|ZP_04755410.1| 16S rRNA processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876375|ref|ZP_05249085.1| 16S rRNA processing protein rimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842396|gb|EET20810.1| 16S rRNA processing protein rimM [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 169
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ L+GE+ + A++ L Y + ++ + L+ + R+
Sbjct: 3 QDFVEIAKIGATYKLDGELNLYPLASSIETLLSYGNWYIQLPANSAWQPLKDESVLRRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + ++++ +A + + + ++ ++ DE + TDL + +G+
Sbjct: 63 KLYIKLASVNDVETAKKYVNSLIGVPKEALP--KVGNDEAYFTDLIGCTIVNTANDSFGK 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ GA +L K + +LIP+ K ++ +L KI++D
Sbjct: 121 VIGIIETGANEVLVCKKDSD-EYLIPYVKQYIVSEDLDLKKIVVD 164
>gi|311745562|ref|ZP_07719347.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
gi|126578122|gb|EAZ82342.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
Length = 176
Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK---- 56
M K ++ + + HGL GEV + +NP D + + +
Sbjct: 1 MNK-EQCFQLGYVAKVHGLRGEVVVVLDTDNPEDYEDLEHLFLEQKSRLVPFFLEHFVLQ 59
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +A F D+++ A EL ++Y ELE+D+++ +L E FD
Sbjct: 60 PGNKVLAKFEDYDSLNQAEELVGSEVYLPLTALP--ELEDDQYYFHELIGFEVFDETIGL 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V VY+ +L + + K LIP + EV+ K+ L
Sbjct: 118 IGTVQVVYDLETQDLLGVTH-QGKEVLIPIQDGIIQEVDKTAKKVFCHLPEGLLE 171
>gi|242308900|ref|ZP_04808055.1| 16S rRNA processing protein RimM [Helicobacter pullorum MIT
98-5489]
gi|239524564|gb|EEQ64430.1| 16S rRNA processing protein RimM [Helicobacter pullorum MIT
98-5489]
Length = 183
Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A IG G+ GEV + + P L Y + +L I ++N R F+
Sbjct: 10 DWVSVAKIGRPVGVKGEVLLHLLTDFPEVLKVGDTYFSQIGDLTIQSYNKENSR--IKFT 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
I++ A + +L LY + K+ +L++DEFF ++ + G+ G+VC +
Sbjct: 68 QINSREIAKQFTNLILYTTQDFTKEHCKLKKDEFFWFEIIGSK-ILELGEILGEVCEIER 126
Query: 125 FGAGSILEIKNTME-------KTFLIPFTKFAVLEVNL 155
FG L IK + + K+FL+P+ K + EV++
Sbjct: 127 FGQKDFLSIKTSHDLQAKGFPKSFLVPYEKRYIKEVDI 164
>gi|154174403|ref|YP_001408554.1| 16S rRNA processing protein RimM [Campylobacter curvus 525.92]
gi|171769257|sp|A7GZB2|RIMM_CAMC5 RecName: Full=Ribosome maturation factor rimM
gi|112803066|gb|EAU00410.1| 16S rRNA processing protein RimM [Campylobacter curvus 525.92]
Length = 176
Score = 117 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 10/176 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+ V +A IG GL G V + + + P + ++ + + I+K Y +K F
Sbjct: 3 SEFVEVAIIGRCVGLKGCVKLHNKGDFPEQFKKNAVFFDKDGNEFIIKSYDVSKETAL-F 61
Query: 65 SGIDNIHSASELRDLKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G ++I A L + LY ++ K+ +L+E EFF D+ + G+ G V +
Sbjct: 62 EGYEDIDLAKSLVNKILYTTKELTRKNCKLKEGEFFYFDVLGLNIV-ENGEILGVVKDIE 120
Query: 124 NFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ ++L +K + + K F +P+ V+ V+L+ +IL + L N+
Sbjct: 121 DNLNNALLYVKTSDDLVSIGFAKNFYVPYIDRFVISVSLENKEILTKDAKSILENS 176
>gi|313673957|ref|YP_004052068.1| 16S rRNA processing protein rimm [Calditerrivibrio nitroreducens
DSM 19672]
gi|312940713|gb|ADR19905.1| 16S rRNA processing protein RimM [Calditerrivibrio nitroreducens
DSM 19672]
Length = 171
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNREL---RILKMYRKNKRF 60
+ + + THGL+GE+ + N + Y+L + L +I + N
Sbjct: 2 RFFRIGFVKGTHGLDGEIKLAMNTENIEMMENLEYLLLGKNRNPLFSGKIEYIAPMNDLL 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ F I++I +A + + ++ E DE + +E + FD G +G +
Sbjct: 62 LVKFENINDIDAAMKFKGYEVLVPENLLPAE--NSDEVYWFKIEGADVFDENGTKFGTLI 119
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+ I IK +K +LI K VL++++ +KI+I
Sbjct: 120 DYIEGGSSDIFRIKGFDDKYYLISNNKSHVLKIDVDNHKIVIR 162
>gi|167627276|ref|YP_001677776.1| 16S rRNA-processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189040841|sp|B0TX17|RIMM_FRAP2 RecName: Full=Ribosome maturation factor rimM
gi|167597277|gb|ABZ87275.1| 16S rRNA processing protein RimM [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 169
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNK 58
V +A IG T+ L+GE+ + A++ L Y + ++ + L+ + R+
Sbjct: 3 QDFVEIAKIGATYKLDGELNLYPLASSIETLLSYGDWYIQLPANSAWQPLKDESVLRRAD 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ + ++++ +A + + + ++ ++ DE + TDL + +G+
Sbjct: 63 KLYIKLASVNDVETAKKYVNSLIGVPKEALP--KVGNDEAYFTDLIGCTIVNTANDSFGK 120
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
V G+ GA +L K + +LIP+ K ++ +L KI++D
Sbjct: 121 VIGIIETGANEVLVCKKDSD-EYLIPYVKQYIVSEDLDLKKIVVD 164
>gi|255994438|ref|ZP_05427573.1| 16S rRNA processing protein RimM [Eubacterium saphenum ATCC 49989]
gi|255993151|gb|EEU03240.1| 16S rRNA processing protein RimM [Eubacterium saphenum ATCC 49989]
Length = 168
Score = 116 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRK-NKR 59
M K + +++ G+ GE+ + S+A +P + ++ + + +
Sbjct: 1 MQK-EDFIVIGKTLAPFGVRGEIKVKSFAQSPDRFKKLPEVHIGDKPYIVESAKIQDHNT 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I + GID+ +AS++R +Y + E+E + DL ++ +++ KY G++
Sbjct: 60 VILSLGGIDDRDAASDVRG-DVYMTASLLEPT---ENEVYIRDLRGLKVYEKD-KYIGEI 114
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ IK K L+P T + +++Q+ K+ + A +
Sbjct: 115 LRAEIIAGRELYLIKLPDGKELLLPCTAEFIKTIDMQDRKMQVVLPAGIME 165
>gi|299783397|gb|ADJ41395.1| 16S rRNA processing protein RimM [Lactobacillus fermentum CECT
5716]
Length = 113
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F +NI+ RD +L D ELEE +++ + + G+
Sbjct: 2 HKGLVLVKFKQFNNINEVQHFRDAELKV--ADQDQAELEEGQYYYHQIIGLTAETVDGRV 59
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G++ + GA + + + L+P V EV+L K++++ +
Sbjct: 60 LGKIKEILAPGANDVWVVDREQKTDLLLPVIDDVVKEVDLAGGKVIVELLEGL 112
>gi|253582220|ref|ZP_04859443.1| 16S rRNA processing protein RimM [Fusobacterium varium ATCC 27725]
gi|251835759|gb|EES64297.1| 16S rRNA processing protein RimM [Fusobacterium varium ATCC 27725]
Length = 190
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYR-KNKRF 60
+L+ + I TH L G V I + + L L + + ++ + ++
Sbjct: 2 ELLTVGKISGTHHLKGAVKIIANIGDAEILEGNRVIVELPEGEQKIFTVISVSPLVGNKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+A F I N A +L++ + +R+ + EDE+ DL +M+ D G+ G+V
Sbjct: 62 VAEFQEITNKTEAGKLKNSLIKIRRELLG---IGEDEYLLNDLLDMKAVDIDNGEILGKV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ A IL I+ T ++P V +++ +I I I
Sbjct: 119 TDIFETAAHDILVIEGTN-TEIMVPDIDEFVKKIDFDNREIFIHLIEGM 166
>gi|255321345|ref|ZP_05362505.1| 16S rRNA processing protein RimM [Campylobacter showae RM3277]
gi|255301498|gb|EET80755.1| 16S rRNA processing protein RimM [Campylobacter showae RM3277]
Length = 167
Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 13 IGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
+G T GL G V + + + P + + + + + ++K Y I +F G ++I S
Sbjct: 2 LGKTVGLKGFVKLHNKGDFPNQFKKNATFCDKDGKELVVKSYNHANDTI-SFYGFEDIDS 60
Query: 73 ASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
A L + +Y +++ K+ +L++ EFF D+ E + + G+V + GA +
Sbjct: 61 AKTLTNKTIYTTKEETRKNCKLKKGEFFYFDVIGCEIY-ENNQRLGEVEDIDEVGANHLF 119
Query: 132 EIKNTM-------EKTFLIPFTKFAVLEVNLQENKI 160
+K EK+F IP+ + +V+++ KI
Sbjct: 120 LVKTDENLISKGLEKSFYIPYIDVYIEKVDVENKKI 155
>gi|78186829|ref|YP_374872.1| 16S rRNA processing protein RimM [Chlorobium luteolum DSM 273]
gi|109893030|sp|Q3B4A2|RIMM_PELLD RecName: Full=Ribosome maturation factor rimM
gi|78166731|gb|ABB23829.1| 16S rRNA processing protein RimM [Chlorobium luteolum DSM 273]
Length = 167
Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 9/164 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLY--SNDNRELRILKMYRKNK 58
++ + + GL GEV + + P Y + D L +
Sbjct: 1 MELWLT-GIVLKPRGLKGEVKVKPVTDYPEKFLSRKSYWVGGSPGDAVPLAVKHASLAGG 59
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
G+D+ A L +L+ + + + + +D + +LE M+ K G
Sbjct: 60 FAWLFLEGVDSREKAEALAGRQLFIEASEAEPRK--DDRAWLHELEGMKVLGAGRKEVGV 117
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ V + A + EI + ++ L+P + V E++L+ I +
Sbjct: 118 LKEVLSMPAHEVYEI-ISGGRSVLVPAIEEFVEEISLEGRYIHV 160
>gi|313681627|ref|YP_004059365.1| 16S rRNA processing protein rimm [Sulfuricurvum kujiense DSM 16994]
gi|313154487|gb|ADR33165.1| 16S rRNA processing protein RimM [Sulfuricurvum kujiense DSM 16994]
Length = 184
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
L+ +AT+G T GL G++ ++ + P ++ DN + L Y R +
Sbjct: 12 DLLHVATLGRTVGLKGDMKLNLSTDFPEQFIPNATFTLDNGKEVTLSSY-NPDRELVHLK 70
Query: 66 GIDNIHSASELRDLKLYAK-RQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
GID +A L + KL+ + L E EFF DL + + + G+V +
Sbjct: 71 GIDTPEAAKALTNAKLFTTFEATRERCNLGEGEFFWFDLLGSKVVEGE-SVLGKVQEIER 129
Query: 125 FGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G L + M TFLIP+ VL + I + GL+
Sbjct: 130 IGPLDYLLVATDPSLVSKGMAATFLIPYIDRFVLGTDATAKVITV---EGGLD 179
>gi|307067382|ref|YP_003876348.1| RimM protein, required for 16S rRNA processing [Streptococcus
pneumoniae AP200]
gi|306408919|gb|ADM84346.1| RimM protein, required for 16S rRNA processing [Streptococcus
pneumoniae AP200]
Length = 133
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 46 RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEE 105
+ + I ++ I F + +I++ + + L +D D L++ EF+ ++
Sbjct: 10 QTVTIASHRKQKNFDIIKFKDMYHINTIEKYKGYSLKVAEEDLND--LDDGEFYYHEIIG 67
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+E ++ G + + GA + +K ++ L+P+ VL V++ ++ ++ +
Sbjct: 68 LEVYEGD-SLVGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEIL 126
Query: 166 AAGLNNT 172
+
Sbjct: 127 EGLDDED 133
>gi|157164206|ref|YP_001466986.1| 16S rRNA processing protein RimM [Campylobacter concisus 13826]
gi|171855062|sp|A7ZDX8|RIMM_CAMC1 RecName: Full=Ribosome maturation factor rimM
gi|112800951|gb|EAT98295.1| 16S rRNA processing protein RimM [Campylobacter concisus 13826]
Length = 176
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
+V +ATIG GL G + + + ++ P + + + N + I+K Y + K + F
Sbjct: 3 SDIVEVATIGRCVGLKGYLKLHNKSDFPEQFKKGATFFDKNDDQLIIKDYNRQKELVL-F 61
Query: 65 SGIDNIHSASELRDLKLYAKRQ-DFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
D++ A L + +Y ++ K+ +L++DEFF D+ ++ G+ G V +
Sbjct: 62 EKFDDLDLAKTLVNKTIYTTKELTRKNCKLKKDEFFQFDIIGLKVV-ENGEILGIVEDIQ 120
Query: 124 NFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ A S+L IK K F IP+ + + VNL +IL+ L N+
Sbjct: 121 DNFANSLLYIKTDEVLIAAGKPKNFYIPYLERFIESVNLDSGEILVKGARDILENS 176
>gi|224419145|ref|ZP_03657151.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|253828080|ref|ZP_04870965.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|313142651|ref|ZP_07804844.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|253511486|gb|EES90145.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
gi|313131682|gb|EFR49299.1| 16S rRNA processing protein RimM [Helicobacter canadensis MIT
98-5491]
Length = 183
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
V +A IG G+ GEV + + P L Y N L I ++N R F+
Sbjct: 10 DWVSVAKIGRAVGVKGEVLLHLLTDFPESLKIGNTYFTQNGTLTIQNYNKENSR--VKFT 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
ID+ A ++ +L LY + K+ L++DEFF D+ + + K G+V +
Sbjct: 68 QIDSPEKAKQITNLILYTTQDFTKEHCILQKDEFFWFDIIGSQIMEED-KILGEVSEIER 126
Query: 125 FGAGSILEIKNTME-------KTFLIPFTKFAVLEV--NLQENKILIDPIAAGLNNT 172
G L IK E K+FLIP+ +LEV NL I A L N+
Sbjct: 127 LGEKDFLVIKTAKELCKNGLPKSFLIPYESRYILEVETNLNPKIIRTQLCKAILENS 183
>gi|288800340|ref|ZP_06405798.1| 16S rRNA processing protein RimM [Prevotella sp. oral taxon 299
str. F0039]
gi|288332553|gb|EFC71033.1| 16S rRNA processing protein RimM [Prevotella sp. oral taxon 299
str. F0039]
Length = 174
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ + + + IG HG+ GEV S+ ++ D Y++ + + + K
Sbjct: 1 MIREESVYRIGVIGKPHGVKGEVS-MSFTDDAFDRVDADYLVLKIEGIFVPFFMEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-K 114
+ + F ID+ A EL +++ R+ ++ DE + + D Q
Sbjct: 60 SNETALIKFENIDSQERAKELTGCEVFFPRELVQELT---DELSWAQIIGFQLIDAQTCN 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V ++ +++ LIP ++ + EV+ + I + L+
Sbjct: 117 AIGTIVDVDETTINTLFVVEDHQNNELLIPASEEFIKEVDADKKTIKVTLPQGILD 172
>gi|268680266|ref|YP_003304697.1| 16S rRNA processing protein RimM [Sulfurospirillum deleyianum DSM
6946]
gi|268618297|gb|ACZ12662.1| 16S rRNA processing protein RimM [Sulfurospirillum deleyianum DSM
6946]
Length = 179
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 9/180 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRF 60
M K L+ +A +G GL GE+ + + P + ++ D E+ + Y +R
Sbjct: 1 MNKQSTLIEVAKVGRLVGLKGELKLHLQCDFPEQFKKGKTFTTDKGEVLEIFSY-NPERG 59
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ +F G A++L + L+ ++D ++ L+E EFF ++ + D G V
Sbjct: 60 LISFVGFQEREKAAKLVNTTLFTSKEDSLQECALKEGEFFWFEMIGAKVIDEGNLCLGIV 119
Query: 120 CGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ L I+ + K F +P+ + +L ++ + L N+
Sbjct: 120 DEIERIAGIDYLVIRTDADLVQKGLVKLFYLPYIERYILSFETLSKEVYVKDGLGILENS 179
>gi|55981002|ref|YP_144299.1| 16S rRNA-processing protein RimM [Thermus thermophilus HB8]
gi|67461327|sp|Q5SJH5|RIMM_THET8 RecName: Full=Ribosome maturation factor rimM
gi|145579204|pdb|2DYI|A Chain A, Crystal Structure Of 16s Ribosomal Rna Processing Protein
Rimm From Thermus Thermophilus Hb8
gi|294979412|pdb|3A1P|A Chain A, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
gi|294979414|pdb|3A1P|C Chain C, Structure Of Ribosome Maturation Protein Rimm And
Ribosomal Protein S19
gi|55772415|dbj|BAD70856.1| 16S rRNA processing protein RimM [Thermus thermophilus HB8]
Length = 162
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ L+ +Y + I +YR + + +
Sbjct: 2 RLVEIGRFGAPYALKGGLR---FRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLA 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L L++YA+ D LEE ++ L + + +G+ G+V + +
Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLP--PLEEGRYYYFALIGLPVY-VEGRQVGEVVDILDA 115
Query: 126 GAGSILEIKNTMEK-----TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I+ E+ L+P V ++E I +DPI +
Sbjct: 116 GAQDVLIIRGVGERLRDRAERLVPLQA---PYVRVEEGSIHVDPIPGLFD 162
>gi|118474549|ref|YP_892200.1| 16S rRNA processing protein RimM [Campylobacter fetus subsp. fetus
82-40]
gi|171473004|sp|A0RPR7|RIMM_CAMFF RecName: Full=Ribosome maturation factor rimM
gi|118413775|gb|ABK82195.1| 16S rRNA processing protein RimM [Campylobacter fetus subsp. fetus
82-40]
Length = 176
Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
V + +G T GL G + + ++ P + + N + ++K Y +N + F
Sbjct: 3 SDFVEVCILGKTVGLKGALKLHDRSDFPNQFKNGAKFYDINSKEFVIKSYDRNNNLVI-F 61
Query: 65 SGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
D+I A L + LY D +D +L +DEFF D+ F G+V +
Sbjct: 62 ENYDSIDLAKTLVNYILYRSINDTIRDCKLAKDEFFYFDIIGCNVF-EDKILLGEVIDIL 120
Query: 124 NFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
GAG + IK + F IP+ ++++ KI +
Sbjct: 121 EVGAGFLFSIKTEGDLVKAGLNSNFYIPYNDNFTQNIDIKSKKIQV 166
>gi|126643178|ref|YP_001086162.1| 16S rRNA processing protein [Acinetobacter baumannii ATCC 17978]
Length = 147
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 33 IDLNRYVLYSNDNRELR-ILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE 91
D + + + ++ + + K + G+ + A L ++ +
Sbjct: 5 FDYLPWYIETKAGWQIVDVKRWKPHGKGLVVALKGVSDRTGAESLVGANIWIAKSQLPKA 64
Query: 92 ELEEDEFFNTDLEEMETF----DRQGKYWGQVCGVYNFGAGSILEIKNT----MEKTFLI 143
++ DE++ +DL+ + D Q GQ+ ++ GA ++ ++ T + +I
Sbjct: 65 DV--DEYYWSDLKGLTVLGLDDDEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMI 122
Query: 144 PFTKFAVLEVNLQENKILID 163
P+ K V V+L+ +I ++
Sbjct: 123 PWHKDVVQRVDLEAGRIYVN 142
>gi|46198979|ref|YP_004646.1| 16S rRNA processing protein rimM [Thermus thermophilus HB27]
gi|59798768|sp|Q72JU7|RIMM_THET2 RecName: Full=Ribosome maturation factor rimM
gi|46196603|gb|AAS81019.1| 16S rRNA processing protein rimM [Thermus thermophilus HB27]
Length = 162
Score = 113 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ L+ +Y + I +YR + + +
Sbjct: 2 RLVEIGRFGAPYALKGGLR---FRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLA 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L L++YA+ D LEE ++ L + + +G+ G+V + +
Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLP--PLEEGRYYYFALIGLPVY-VEGRQVGEVVDILDA 115
Query: 126 GAGSILEIKNTMEK-----TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I+ E+ L+P V ++E I +DPI +
Sbjct: 116 GAQDVLIIRGVGERLRDRAERLVPLQA---PYVRVEEGGIHVDPIPGLFD 162
>gi|320107353|ref|YP_004182943.1| 16S rRNA processing protein RimM [Terriglobus saanensis SP1PR4]
gi|319925874|gb|ADV82949.1| 16S rRNA processing protein RimM [Terriglobus saanensis SP1PR4]
Length = 188
Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 21/188 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNRELRILKMYRK-- 56
M + +++A + G GEV + + P R V + R +
Sbjct: 1 MSEEQNWIVIAHLLRPQGRKGEVLAELLTDFPDRFTERRSVFLLKEGSSPRAATVVDHWM 60
Query: 57 -----NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
R + F G ++I A +L ++ D LEE +F+ +DL E ++
Sbjct: 61 PMGKNAGRVVLHFEGSNSIDDAEKLAGFEVGIPEAD--RVPLEEGDFYVSDLVGCEIIEQ 118
Query: 112 QGKYWGQVCGVY---------NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ G V V+ + A IL ++ LIP K + + ++ +I +
Sbjct: 119 E-HVIGIVRDVHFPADANGVRHPEAVPILVVERPDGDELLIPLAKAFLTKPDVANKRIEM 177
Query: 163 DPIAAGLN 170
L
Sbjct: 178 TLPDGLLE 185
>gi|15606340|ref|NP_213719.1| hypothetical protein aq_1057 [Aquifex aeolicus VF5]
gi|3914653|sp|O67156|RIMM_AQUAE RecName: Full=Ribosome maturation factor rimM
gi|2983543|gb|AAC07118.1| hypothetical protein aq_1057 [Aquifex aeolicus VF5]
Length = 166
Score = 113 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA--NNPIDLNRYVLY--SNDNRELRILKMYRKNKR 59
+++ V++ + T GL GE+ + YA +L + L D + + + +
Sbjct: 2 MEEYVVIGKVLDTFGLEGELKVRPYAPPEVFENLEKVYLKRKGGDWVPFEVEWVDFIDDK 61
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
I F G D+I + + KL+ +++ + EE ++ +L ME +GK G+V
Sbjct: 62 VIIKFKGYDSIDEVEQFKGAKLFLPKEELPELGEEE--YYAYELVGMEVETDKGKKLGKV 119
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V + G L + ++ L+PF VL+V+ + KI++
Sbjct: 120 ERVQDMGPYDALVL---DKENLLVPFVSDIVLKVDKENKKIIV 159
>gi|330836481|ref|YP_004411122.1| Ribosome maturation factor rimM [Spirochaeta coccoides DSM 17374]
gi|329748384|gb|AEC01740.1| Ribosome maturation factor rimM [Spirochaeta coccoides DSM 17374]
Length = 173
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSNDNRELR---ILKMYRKNKRFIATF 64
I T HG+ GEV + + + P L L S D + +R + ++ I F
Sbjct: 11 GMIKTPHGIRGEVKVVLFGDAPEWFKKLKNVELRSPDGKAIRTCKVETCRMTSRMLIVKF 70
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
D +A + +++ R+ K LE+ E++ +DL G+ V G +
Sbjct: 71 QEFDTPETARSVSGWEVWIPRE--KAAPLEKGEYYLSDLMGCN-LTVDGQAVAHVVGFVD 127
Query: 125 FGAGSIL--EIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
IL + + +T+ +PF+ +V++ I++
Sbjct: 128 T-VHPILLEVVASVDGRTYYVPFSAHFTGDVDVTGKTIVLT 167
>gi|257469511|ref|ZP_05633603.1| 16S rRNA processing protein rimM [Fusobacterium ulcerans ATCC
49185]
gi|317063755|ref|ZP_07928240.1| ribosome maturation factor rimM [Fusobacterium ulcerans ATCC 49185]
gi|313689431|gb|EFS26266.1| ribosome maturation factor rimM [Fusobacterium ulcerans ATCC 49185]
Length = 190
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYR-KNKRF 60
+L+ + I TH L G V I + + L L + + + + ++
Sbjct: 2 ELLTVGKISGTHHLKGAVKIIANIGDAEILEGNRVIVELPGGEQKIFTVTSVNPLVGNKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+A F + N A +L++ + +R+ + EDE+ DL +M+ D G G++
Sbjct: 62 VAEFQEVTNKTEAGKLKNSLIKIRRELLG---IGEDEYLLNDLLDMKAVDADNGDILGKI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ A IL I+ ++P V +++ + +I I I
Sbjct: 119 TDIFETAAHDILVIEREN-TEIMVPDVDEFVKKIDFDKREIFIHLIEGM 166
>gi|302338388|ref|YP_003803594.1| 16S rRNA processing protein RimM [Spirochaeta smaragdinae DSM
11293]
gi|301635573|gb|ADK81000.1| 16S rRNA processing protein RimM [Spirochaeta smaragdinae DSM
11293]
Length = 165
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSY---ANNPIDLNRYVLYSN-DNRELRILKMYRKNKRFI 61
V++ + T+HG+ G + + S + + L VL R + + +
Sbjct: 2 DTVVIGKVRTSHGVRGLLKVRSLSGETGHFLALKEVVLKRERGERSFVVESVRVAGSDLL 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
GID+ + ++ L EDE++ +DL +G G +
Sbjct: 62 MKLRGIDSPEEGKLWAGADMIVSKE--LGAALREDEYYYSDLIGCAVV-CRGSEVGTIVS 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G +LE+K K +++PF K V V+L ++ + GL
Sbjct: 119 IVENGVSDLLEVKTDGGK-WIVPFQKHFVGSVDLVSR--TVELLEPGL 163
>gi|120437356|ref|YP_863042.1| 16S rRNA processing protein RimM [Gramella forsetii KT0803]
gi|171460862|sp|A0M5T0|RIMM_GRAFK RecName: Full=Ribosome maturation factor rimM
gi|117579506|emb|CAL67975.1| 16S rRNA processing protein RimM [Gramella forsetii KT0803]
Length = 175
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K ++ + I GEV I + P V Y+++ I + Y
Sbjct: 1 MTK-EECFYLGKIVAKFSFKGEVLIKLDTDEPETYTEMESVLVEYNDNLVPFFIERSYLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ A F I+ A ++ +Y +L ED+F+ ++ D +
Sbjct: 60 KSTLLRAKFEDIETEEDAEDMIGAHVYLPLSMLP--KLPEDKFYFHEIIGFNVIDAEHGN 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + + A ++ EI+ K LIP + +V+ + N + + +
Sbjct: 118 IGKIVSINDSTAQALFEIE-KDGKQILIPMNDEFIEKVDKKNNTVRVITPEGLVE 171
>gi|15807006|ref|NP_295733.1| 16S rRNA-processing protein RimM [Deinococcus radiodurans R1]
gi|14423902|sp|Q9RSW1|RIMM_DEIRA RecName: Full=Ribosome maturation factor rimM
gi|6459796|gb|AAF11557.1|AE002038_6 16S rRNA processing protein RimM, putative [Deinococcus radiodurans
R1]
Length = 188
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 9/166 (5%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
+ + HG+ G + + + L +Y L + + + +G+
Sbjct: 14 RLGHLLGPHGVQGGIKLYVLGDPAQVLALKRVYVESRGWLSLRRAEGMPPNLVLYLAGVS 73
Query: 69 NIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
+ A ELR L++YA + D LEE F+ DL +E + G+ G V V + G
Sbjct: 74 SREGAEELRGLQVYATDAELPD--LEEGTFYYHDLRGLEVYGAGGERLGTVSDVMDAGHQ 131
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENK-----ILIDPIAAGL 169
+L + +F +P V EV L K + D A +
Sbjct: 132 DLLVVDYGGGTSF-VPLQAPYV-EVPLAGGKPGAVHLTADAPAGLI 175
>gi|42526395|ref|NP_971493.1| 16S rRNA processing protein RimM [Treponema denticola ATCC 35405]
gi|59798793|sp|Q73PB6|RIMM_TREDE RecName: Full=Ribosome maturation factor rimM
gi|41816588|gb|AAS11374.1| 16S rRNA processing protein RimM [Treponema denticola ATCC 35405]
gi|325473340|gb|EGC76535.1| 16S rRNA-processing protein rimM [Treponema denticola F0402]
Length = 179
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 20/172 (11%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-----VLYSNDNRE-------LRILKM 53
L+ I T G+ G V ++S++ + + RE I ++
Sbjct: 2 DLLATGRIRGTFGIEGFVKVESFSGEYEHFLGFDRVFLSILKEKLREQKYKDGWFEIEEV 61
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
+ + F GIDN +A L +L+ R K L+E E + DL +G
Sbjct: 62 NLRKADALVKFKGIDNPEAAKCLTGSELFIPRD--KAAPLDEGEVYVHDLCNCNLV-CEG 118
Query: 114 KYWGQVCGVYNFGAGSILEIKN-----TMEKTFLIPFTKFAVLEVNLQENKI 160
G++ V G G +LEI E +F +PF K + +++L+ +
Sbjct: 119 TLVGKITSVAEGGGGYLLEIAGKTSEAAAESSFYVPFNKEFIGKIDLKAKTV 170
>gi|261416790|ref|YP_003250473.1| 16S rRNA processing protein RimM [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373246|gb|ACX75991.1| 16S rRNA processing protein RimM [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327205|gb|ADL26406.1| 16S rRNA processing protein RimM [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 185
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 14/175 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSNDNRELRILKMYR 55
M ++ + + + HG+ G + ++ R + + EL + +
Sbjct: 1 MPDSEEYITVCQLMRAHGVKGYIKAMPLTHDLTRCKSLKDVRVQKRNGEVLELTLEDAKQ 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
N ++ F G D + S L + + + L E E++ DLE G+
Sbjct: 61 ANNLWLLKFKGFDTPEALSPLVNGDVMIPESE--RLPLPEGEYYLDDLEGFRVHTEDGRD 118
Query: 116 WGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
G+V V IK K+ L P+ V E+N +E I+ D
Sbjct: 119 VGEVIEVQELMTVDAFLIKFDLAVQSEFSSKSILAPWIDDCVKEINDEEKFIVCD 173
>gi|219111979|ref|XP_002177741.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410626|gb|EEC50555.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 341
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 33/202 (16%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-------VLYSNDNRELRILKMYRKN-K 58
+ + + HG++G V + + PID R++ +L+ R+N +
Sbjct: 129 YIEVGIVRGAHGVHGWVKVKPTTSFPIDRLCVAGIKHLKPPKKRAPRKVLLLEGKRRNAE 188
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD------RQ 112
++ I++ A +LR LY + ++ +++E+ +DL E F
Sbjct: 189 EYLIKLEQINDRDEALKLRGSLLYVREEE--KMATDQEEYMVSDLVGSEVFLDTLDTVEN 246
Query: 113 GKYWGQVCGV--------YNFGAGSILEIKNTMEKT---------FLIPFTKFAVLEVNL 155
+ G V GV +LE+ + LIP V V+
Sbjct: 247 PLFLGVVNGVVFADEMCSIPGLGHDMLEVVLRKGQDGMASLRDELVLIPMVPQIVTHVSA 306
Query: 156 QENKILIDPIAAGLNNTTMKNP 177
+ I I+P + L+ T ++
Sbjct: 307 AKGVIHINPPSGLLDLTYLREE 328
>gi|297566678|ref|YP_003685650.1| 16S rRNA processing protein RimM [Meiothermus silvanus DSM 9946]
gi|296851127|gb|ADH64142.1| 16S rRNA processing protein RimM [Meiothermus silvanus DSM 9946]
Length = 163
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNP--IDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ + + IG+ +GL G + P DL R L R I + Y + +
Sbjct: 2 RRIEVGRIGSPYGLKGGFK---FRGEPWVEDLPRIYLQDLGYR--TIEEAYWVGEELVLH 56
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
SG+ + A L L +YA D ELEE F+ L F G+ +G+V V
Sbjct: 57 LSGVKHRTDAEALVGLLVYADEGDLP--ELEEGSFYYYQLLGRTVF-VDGEPFGEVAEVQ 113
Query: 124 NFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A +L IK + +T+L+PF V+ ++++ I I+ I +
Sbjct: 114 EAAAQDLLVIKRFGTSLRALSRTYLVPFQAPYVV---VKDDGIHIEAIPGLFD 163
>gi|124003528|ref|ZP_01688377.1| 16S rRNA processing protein RimM [Microscilla marina ATCC 23134]
gi|123991097|gb|EAY30549.1| 16S rRNA processing protein RimM [Microscilla marina ATCC 23134]
Length = 177
Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 8/171 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRF 60
+ + I T+G+ GE++ +N + +V+ I ++
Sbjct: 4 EDCYEVGYIAKTYGVKGEIHAVFDVDNSEEYREIESIFVVKDRHMVPYFIEQVRFVQGYV 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
F ID++ A L KL E EE+E++ D+ D G+V
Sbjct: 64 RLKFEEIDDVDQAKMLVGSKLMLPIDVLP--ETEEEEYYFHDILGYMVVDADKGEIGKVT 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKF-AVLEVNLQENKILIDPIAAGLN 170
+Y+ ++ + + K LIP+ K + +++ ++ I++ L+
Sbjct: 122 QLYDSTNQDLIGVTH-QGKEVLIPYIKDQIIQKLDHEQKVIVVTLPGGLLD 171
>gi|116621688|ref|YP_823844.1| 16S rRNA processing protein RimM [Candidatus Solibacter usitatus
Ellin6076]
gi|122254547|sp|Q024L7|RIMM_SOLUE RecName: Full=Ribosome maturation factor rimM
gi|116224850|gb|ABJ83559.1| 16S rRNA processing protein RimM [Candidatus Solibacter usitatus
Ellin6076]
Length = 176
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 15/172 (8%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPI---DLNRYVLYSND----NRELRILKMYRKNKR 59
V +A +G T G GEV ++ P DL L+ + + + +
Sbjct: 8 WVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEEAWYHLQT 67
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQ 118
+ F G+D I A L ++ L+E E+F +DL E DRQ G+ G+
Sbjct: 68 LVLKFRGVDTISEAESLYGAEVRIPASQ--RISLDEGEYFESDLIGCEVVDRQSGQSLGK 125
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + LIPF + +E+N +I ++ +
Sbjct: 126 VSAWD-----DGGGSGLLVVGDLLIPFARAICVEINPAAKRITVELPEGLKD 172
>gi|307721673|ref|YP_003892813.1| 16S rRNA processing protein RimM [Sulfurimonas autotrophica DSM
16294]
gi|306979766|gb|ADN09801.1| 16S rRNA processing protein RimM [Sulfurimonas autotrophica DSM
16294]
Length = 181
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 1 MVKLD---KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN 57
M K KL+ +ATIG T G+ G++ + P + + + +E I+
Sbjct: 1 MSKQSSNNKLLHIATIGKTVGIKGDMKFHIKCDFPEQFVKGSTFLINKKE-SIMLSEVDL 59
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDF-KDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + + I N+ A + + KL+ +D K+ LEE E+F DLE+ E + K
Sbjct: 60 DRGLVRINNITNLEDAKKFTNAKLFTTYEDTRKNCHLEEGEYFWFDLEDCEVY-EDSKCL 118
Query: 117 GQVCGVYNFGAGSIL-------EIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V + + + L ++N + K+FL+PF + + V++ + +I +
Sbjct: 119 GVVKEIERLNSTNYLSIVTYESLVQNGLPKSFLVPFIEPFKVAVDVDKKRITL 171
>gi|226355970|ref|YP_002785710.1| 16S rRNA-processing protein RimM [Deinococcus deserti VCD115]
gi|226317960|gb|ACO45956.1| putative 16S rRNA-processing protein RimM [Deinococcus deserti
VCD115]
Length = 194
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIATFSGI 67
+ HG+ G + + +P + + +Y D LR+ + +GI
Sbjct: 10 RVGHFLGPHGVQGGIKLYVL-GSPEQVLKLPRVYVEDRGWLRVRRAEPLVPGVALHLAGI 68
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ A LR L +YA D E E ++ +L + D G G+V V + G
Sbjct: 69 TSREGAETLRGLNVYAADSDLPAPE--EGVYYYHELRGLPVRDESGTPLGEVVDVEDSGH 126
Query: 128 GSILEIKNTMEKTFLIPFTKFAVLEVNLQEN-----KILIDPIAAGL 169
+L +++ +F +P V +VNL+ + + A L
Sbjct: 127 QDLLVVRHEGGDSF-VPLQAPYV-QVNLEGRQPVSLTLTAETPAGLL 171
>gi|313675828|ref|YP_004053824.1| 16S rRNA processing protein rimm [Marivirga tractuosa DSM 4126]
gi|312942526|gb|ADR21716.1| 16S rRNA processing protein RimM [Marivirga tractuosa DSM 4126]
Length = 182
Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+KLD+ + + HGL GE+YI + P D ++L + I + KN
Sbjct: 1 MKLDQCFQLGMVLKPHGLKGELYISLDTDYPEDYQELESVFLLQNGKLVPFFIEHIQLKN 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
K + F +++ A LR L+ + EL ++F+ ++ + D + G
Sbjct: 61 KEALVKFEDVEDKEGALALRGSTLHLPLTELP--ELTGNQFYFHEISGFQIEDTEKGMLG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
V V+ G ++ + + K LIP +L V+ + + + +
Sbjct: 119 VVKEVFEAGHQDLIGM-DYKGKEVLIPINDDVILNVDRENSLLKV 162
>gi|224003577|ref|XP_002291460.1| hypothetical protein THAPSDRAFT_262862 [Thalassiosira pseudonana
CCMP1335]
gi|220973236|gb|EED91567.1| hypothetical protein THAPSDRAFT_262862 [Thalassiosira pseudonana
CCMP1335]
Length = 283
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 44/215 (20%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANN---------------PIDLNRYVLYSNDNRELRIL 51
+ + TI HG++G + + S + P + + + R LR
Sbjct: 56 YIELGTIVGAHGVHGMMKLTSITDFSEHRLCQPGIRHIKPPNRRSPREVQLVEGRPLRSE 115
Query: 52 KMYR---KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
N +++ I++ +A +LR LY+ ++ D LEEDE+ +DL +
Sbjct: 116 AATIGTDTNPKYLIRLDHINDRDAALKLRGCVLYSLIEEKVDGLLEEDEYLVSDLVGLNV 175
Query: 109 FDRQGKY------------WGQVCGV--------YNFGAGSILEIKNT------MEKTFL 142
+ + + G + GV +LE+ ++ +
Sbjct: 176 YLEEHEDGDSNSRSFEDLFVGFIRGVVMGSEMCAIPGLGQDLLEVVLPSIHGGQGDEMVM 235
Query: 143 IPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP 177
IPF V V+L ++I+P L+ + +
Sbjct: 236 IPFVPQIVSSVDLDGRMVVINPPKGLLDLSYRREE 270
>gi|152991966|ref|YP_001357687.1| 16S rRNA processing protein RimM [Sulfurovum sp. NBC37-1]
gi|166226484|sp|A6Q771|RIMM_SULNB RecName: Full=Ribosome maturation factor rimM
gi|151423827|dbj|BAF71330.1| 16S rRNA processing protein RimM [Sulfurovum sp. NBC37-1]
Length = 178
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 4 LDKLVL----MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKR 59
+ K + +A IG T GL G++ + + + P Y ++ EL I + KR
Sbjct: 1 MQKPINENFFIAQIGRTVGLWGDLKLHLHTDFPEQFKVGNSYQSNRGELTISDI--NFKR 58
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQ 118
F G ++I +A +L + KLYA K++ LEE + F ++ ++ + G
Sbjct: 59 GTIRFQGYESIDAAKKLTNTKLYADEAQTKEQCPLEEGQHFWFNVIGCTV-NQGDELLGV 117
Query: 119 VCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
V + L IK K FL+P+ V+ + + + + L
Sbjct: 118 VDDIQRLADVDYLSIKTDKALVDTGLPKNFLVPYIDRYVINTDEKSKIVHVKDAKDILE 176
>gi|330945888|gb|EGH47258.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 113
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYAN---NPIDLNRYVLYSND--NRELRILKMYRKNKR 59
D L+++ I + HG+ GEV + S+ + N +D + L ++++ ++ ++K
Sbjct: 9 DDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGRLQSKF 68
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEM 106
+ G+D+ A L ++ R F D L++ E++ LE +
Sbjct: 69 LVTKLKGLDDREEARLLSGYEICVPRNLFPD--LDDGEYYWYQLEGL 113
>gi|78776654|ref|YP_392969.1| 16S rRNA processing protein RimM [Sulfurimonas denitrificans DSM
1251]
gi|109893067|sp|Q30TE7|RIMM_SULDN RecName: Full=Ribosome maturation factor rimM
gi|78497194|gb|ABB43734.1| 16S rRNA processing protein RimM [Sulfurimonas denitrificans DSM
1251]
Length = 179
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 1 MVKLD-KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNK 58
M K KL+ +ATIG + GL G++ + ++ P + V + N+N L + + ++
Sbjct: 1 MSKQSNKLLHIATIGKSVGLGGDMKLHIKSDFPEQFKKGVSFFINENETLTLSDI--NHE 58
Query: 59 RFIATFSGIDNIHSASELRDLKLY--AKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
R + F G ++ A +L + LY +R K+ LE+DE+F D+E GK
Sbjct: 59 RALIKFVGYNSPEDAKKLTNKNLYTTIERTR-KECRLEKDEYFWFDIEGCSVV-EDGKVL 116
Query: 117 GQVCGVYNFGAGSIL-------EIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G V + G + L +K+ K+FLIPF + + +++E I +
Sbjct: 117 GIVDELDRMGITNYLCVITDETLVKSGFAKSFLIPFREPFTINTDIKEKIITV 169
>gi|224542518|ref|ZP_03683057.1| hypothetical protein CATMIT_01701 [Catenibacterium mitsuokai DSM
15897]
gi|224524560|gb|EEF93665.1| hypothetical protein CATMIT_01701 [Catenibacterium mitsuokai DSM
15897]
Length = 99
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 68 DNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ + L ++Y R E EF+ DLE ++ +G G+V ++ GA
Sbjct: 1 TDREAVEALHGTEIYVPRSALPPPR--EGEFYWVDLEGLDVVTTEGVALGKVSHLFATGA 58
Query: 128 GSILEIKNTMEKTFLIPFT-KFAVLEVNLQENKILID 163
+L + E+ +IPF VL V+ + ++ +D
Sbjct: 59 NDVL-VARDDERERMIPFVIPQYVLSVDFEARRVTVD 94
>gi|298707273|emb|CBJ25900.1| Probable 16S rRNA-processing protein rimM [Ectocarpus siliculosus]
Length = 422
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 32/192 (16%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY---------VLYSNDNRELRILKMYRKN 57
+ + I HG+ GEV + S + +NR R++ ++ +
Sbjct: 214 YIEVGHIQGAHGIKGEVKVRSSTDF--AINRLCTPGIKHIKAPNRRFPRDIELIGGRWQK 271
Query: 58 -KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-- 114
+ F+ G+ +A+ LR K+Y + D E +E+ DL + + +
Sbjct: 272 EEIFLLQLEGVKTRDAAAALRGHKVYVLEDEEVDLEE--NEYMVRDLVGGRAYRQDDESV 329
Query: 115 YWGQVCGVY-------NFG-AGSILEIKNTME------KTFLIPFTKFAVLEVNLQEN-- 158
Y G+V GV G A +LE++ +E K IPF V V ++E
Sbjct: 330 YIGEVVGVVLGNDISPTAGLASDLLELRLPLENPGDIPKECYIPFVPALVPVVRVEEGNC 389
Query: 159 KILIDPIAAGLN 170
IL+D L+
Sbjct: 390 TILMDLPEGLLD 401
>gi|301167137|emb|CBW26716.1| 16S rRNA processing protein [Bacteriovorax marinus SJ]
Length = 180
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLYSNDNR--------ELRI 50
M K ++ V + HG+ G + ++ + +L + +R E
Sbjct: 1 MDK-EQYVELGFCVKPHGIKGGFTFNLSNVEDSVLGKKSKILLTPRDRGSSLSPEGEFFT 59
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD 110
+K + I + + + +L + R DF L+EDEF+ +DL ++ +
Sbjct: 60 IKSIAFGNKVITYLEEVTDRNKVEDLIPFNISVSRDDFPS--LDEDEFYLSDLVGLDVLE 117
Query: 111 RQG-KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKIL 161
+ + +G+V Y+ A +L +K + ++ +PF + +N++EN I
Sbjct: 118 EESMEPYGKVSDFYDNTAQVVLVVKGSGKRVLELPFIEEFFPTINIEENYIT 169
>gi|95930752|ref|ZP_01313485.1| 16S rRNA processing protein RimM [Desulfuromonas acetoxidans DSM
684]
gi|95133232|gb|EAT14898.1| 16S rRNA processing protein RimM [Desulfuromonas acetoxidans DSM
684]
Length = 153
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 3/121 (2%)
Query: 50 ILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF 109
+ K ++ + G ++I+ ++Y + D L+ED + LE ++
Sbjct: 33 VTKSSWHKQQILLVLKGFEHINKIESFVGAEVYMAVDELPD--LDEDSHYWHQLEGLQVV 90
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
D++ G + + GA + ++ + P + E++L I +D +
Sbjct: 91 DKRAGKLGVLTSLLETGAHDVYVVEGPHG-EVMFPAVAALITEIDLDRGVIQVDLPDGLV 149
Query: 170 N 170
Sbjct: 150 E 150
>gi|237737104|ref|ZP_04567585.1| ribosome maturation factor rimM [Fusobacterium mortiferum ATCC
9817]
gi|229420966|gb|EEO36013.1| ribosome maturation factor rimM [Fusobacterium mortiferum ATCC
9817]
Length = 183
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMYRK--NKRF 60
+L+ + I TH L G V + S N L V +N+ + +K +
Sbjct: 2 ELLTVGKISGTHHLKGAVKVVSNIENIEILLNNRIVVEVGENNQRILTVKSASHLVGNKC 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ F I N A L++ + +R+ EDE+ DL M+ D + G V
Sbjct: 62 VLEFEEITNKTEAGNLKNGFIKVRREILGVG---EDEYLLNDLLNMKAIDIDTEEELGTV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNPQY 179
++ A IL I++ + ++P V +++ + I I I K Q
Sbjct: 119 VDIFETAAHDILVIESA-KCEVMVPDIDEFVKKIDFDKRVIYIHLIEGMKEEKGKKYQQD 177
Query: 180 D 180
D
Sbjct: 178 D 178
>gi|313680225|ref|YP_004057964.1| 16S rRNA processing protein rimm [Oceanithermus profundus DSM
14977]
gi|313152940|gb|ADR36791.1| 16S rRNA processing protein RimM [Oceanithermus profundus DSM
14977]
Length = 158
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 12/167 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIATF 64
LV + +G H L G + S P L +Y + ++ + + F
Sbjct: 2 NLVRIGRLGRPHALRGGLKFRS--EAPEALLDQPRVYLEGLGWRAVARVEPLGEDLVVYF 59
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
G+++ +A EL L + + ++ + E ++ L + F + + G+V V +
Sbjct: 60 VGVESREAAEELAGLDVLLEPENLPE---PEGGWYYFQLVGLPVFLGE-EPLGEVVDVMD 115
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI-LIDPIAAGLN 170
GA +L ++ + L+P V + E + L++P L
Sbjct: 116 TGAQDVLVVRRGARR-LLVPLQA---PYVEVAEGAVRLVEPPEGLLE 158
>gi|255018465|ref|ZP_05290591.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
F2-515]
Length = 94
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 75 ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIK 134
+++ L K + LEE+EF+ ++ G+ G++ + GA + +K
Sbjct: 1 RMKEGVLKIKETQLTN--LEENEFYFHEIIGCTVVTTDGEELGEITEILTPGANDVWVVK 58
Query: 135 NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+K LIP+ V E+N+ + KI I+ + L+
Sbjct: 59 GADKKEKLIPYIADVVKEINIDDQKITIEVMEGLLD 94
>gi|189911143|ref|YP_001962698.1| 16S rRNA-processing protein RimM [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775819|gb|ABZ94120.1| RimM protein, required for 16S rRNA processing [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 178
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-----NDNRELRILKMYR 55
M LV + G++HG+ G + + + L + + I +
Sbjct: 1 MSTKPSLVKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRP 60
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK- 114
F+ G D + + R L K++D E E ++ DL + ++ K
Sbjct: 61 NGNHFLVKIKGYDTPETVVKYRGYSLLWKKEDLPKP--NEGEIYSEDLIGLLVISKETKQ 118
Query: 115 YWG-QVCGVYNFGAGSILEIKN--TMEKTFLIPFTKFAVLEVNLQENKI 160
++ V + A ILE K +T L+PF V + +L+ I
Sbjct: 119 PLNYKITQVMDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTI 167
>gi|149924344|ref|ZP_01912712.1| 16S rRNA processing protein RimM [Plesiocystis pacifica SIR-1]
gi|149814782|gb|EDM74353.1| 16S rRNA processing protein RimM [Plesiocystis pacifica SIR-1]
Length = 186
Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---------ELRIL 51
M +LVL+ + HG+ G + + + L V S R +
Sbjct: 1 MEPDSRLVLLGYVAGAHGVRGALRVKLHNAESSTLAPGVALSFRPRGAEDDDAIARHEVT 60
Query: 52 KMYRKNKRFIATF--SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF 109
++ K + +G++ +A LR ++ +R EL+ DEF+ DL ++
Sbjct: 61 RVAPKPGSEMVRLWLAGVNAREAADALRGFEVLIERDALP--ELDADEFYLDDLVDLPVL 118
Query: 110 -----DRQG-KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ QG G + G+ + G +L I+ + +L+P + + + +++++D
Sbjct: 119 RRRDPEAQGFDALGTIVGISSNGEQDLLVIRL-RGREWLLPAIGVFITAI--EADRVIVD 175
Query: 164 PIAAGLNNTTM 174
L
Sbjct: 176 VHDDMLPEDKP 186
>gi|226227739|ref|YP_002761845.1| putative 16S rRNA processing protein RimM [Gemmatimonas aurantiaca
T-27]
gi|226090930|dbj|BAH39375.1| putative 16S rRNA processing protein RimM [Gemmatimonas aurantiaca
T-27]
Length = 169
Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 17/170 (10%)
Query: 15 TTHGLNGEVYIDSYANNPIDLNR--YVLYSND------------NRELRILKMYRKNKRF 60
HG+ G ++S + P L VL++ D + L I N+ +
Sbjct: 3 RAHGVRGAWAVESLNDAPDVLFASGAVLFAGDREGNLLPGADGAPQPLHIEDGRPMNREW 62
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
+ + + + + R L A E +EDE + DL M G V
Sbjct: 63 LVRVTEVTDRDVSDAWRGRYLLADAASLP--EADEDEVYVGDLIGMRVEVDGQGLVGHVR 120
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
VY+ G ILE++ + + L+P+ V ++ + I++ P+A L+
Sbjct: 121 DVYDAPQGFILEVETSTGRP-LVPWHDEIVRSIDEETRTIVLAPLAGLLD 169
>gi|218295517|ref|ZP_03496330.1| 16S rRNA processing protein RimM [Thermus aquaticus Y51MC23]
gi|218244149|gb|EED10675.1| 16S rRNA processing protein RimM [Thermus aquaticus Y51MC23]
Length = 164
Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ + +Y + + +Y+ + + +
Sbjct: 4 RLVEIGRFGAPYALAGGLK---FRGEPVVAHLTRIYVEGHGWRAVEDLYQVGEELVVHLA 60
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ A L L++YA+ D LEE +++ L + + +G+ G+V + +
Sbjct: 61 GVSTRELAEALVGLRVYAEVADLP--PLEEGQYYYFALIGLPVY-VEGQKVGEVADILDA 117
Query: 126 GAGSILEIKNTMEK-----TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I+ E+ L+P V ++ I ++PI +
Sbjct: 118 GAQDVLVIRGVGERLRDRAERLVPLQA---PYVRVEAEGIHVEPIPGLFD 164
>gi|57167724|ref|ZP_00366864.1| 16S rRNA processing protein RimM, putative [Campylobacter coli
RM2228]
gi|305433229|ref|ZP_07402385.1| 16S rRNA processing protein RimM [Campylobacter coli JV20]
gi|57020846|gb|EAL57510.1| 16S rRNA processing protein RimM, putative [Campylobacter coli
RM2228]
gi|304443930|gb|EFM36587.1| 16S rRNA processing protein RimM [Campylobacter coli JV20]
Length = 179
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-LYSNDNRELRILKMYRKNKRFIATF 64
+ +A +G T GL G + + + ++ + ++ + + +K Y + F
Sbjct: 5 NFIQVAKLGKTVGLKGYLKLYNLSDFIQQFKKGASFFTENGKSQLKIKHYNLANSSVL-F 63
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G +N+ +A +L +L LY + + L++DEFF D+ + E FD + + G+V +
Sbjct: 64 EGYENVEAAKQLINLILYQSIEATRQTCILKKDEFFYFDILKCEVFDDE-RRLGKVVDIL 122
Query: 124 NFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQ 156
G + EI++ E KTF IP+ V +++++
Sbjct: 123 EVGDSYLFEIQSDQELIDKAYAKTFFIPYIDKYVNKIDIE 162
>gi|296126136|ref|YP_003633388.1| 16S rRNA processing protein RimM [Brachyspira murdochii DSM 12563]
gi|296017952|gb|ADG71189.1| 16S rRNA processing protein RimM [Brachyspira murdochii DSM 12563]
Length = 169
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 8 VLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+ A I HGL GEV + Y + LN+ + + + + +KNK F+
Sbjct: 3 IFYAKITGIHGLKGEVEMTFSDKGYFASLPVLNKNTSIIINGQTFTVTNVKKKNKAFVLA 62
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
ID + A EL L ++ + EL+ D F+ +L + D +G++ VY
Sbjct: 63 LKDIDTLEKAKELIGLDIFIDSSNLP--ELDNDTFYEAELIGYKIIDSDNNIYGEITDVY 120
Query: 124 NFGAGSILEIK-NTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + + EIK IPF + + I I
Sbjct: 121 SIPSNYVFEIKLAENGNIVSIPFVHAYFGKADKDNKSIQI 160
>gi|255036342|ref|YP_003086963.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
gi|254949098|gb|ACT93798.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
Length = 186
Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+ D L+ I THG G V I + P D YV + + ++ +
Sbjct: 1 MTQDNCYLLGYIVRTHGTAGNVVIYLDVDYPEDYGDLETVYVEIKGELVPYFVDEINLQK 60
Query: 58 K-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ I TF ID I A +L LY +D EL EDEF+ +++ + D+
Sbjct: 61 QSNAIVTFEDIDTIEKAQKLVGSSLYMPLEDLA--ELGEDEFYYHEIKGFKVVDQTKGDL 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V VY+ ++ + + LIP V++ + +L++ L
Sbjct: 119 GIVREVYSLNGQDLIAM-DFQGSEVLIPTANDIVIKADKDAKSLLVNLPEGLLE 171
>gi|312129652|ref|YP_003996992.1| 16S rRNA processing protein rimm [Leadbetterella byssophila DSM
17132]
gi|311906198|gb|ADQ16639.1| 16S rRNA processing protein RimM [Leadbetterella byssophila DSM
17132]
Length = 176
Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 8/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFIATFS 65
+ I TH L GEV I + P + ++ + ++ K K+ I
Sbjct: 9 LGKITKTHALKGEVIIYLDVDYPEEYEDLEAIFLDIKGQLVPYIVEELQIKGKKSILKLE 68
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWGQVCGVYN 124
I++I A ++ + +Y L+ ++F+ ++ E FD + G++ +Y
Sbjct: 69 DINSIDDAYKIVNCDVYLPLTALPA--LKGNQFYYHEVIGFEIFDTNTQSTVGKLKAIYE 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ I + EK LIP + +V+ + I + ++
Sbjct: 127 STGQDLFAI-DMDEKEVLIPIVDEFIKKVDRENQSIHVQLPDGLID 171
>gi|228471380|ref|ZP_04056181.1| 16S rRNA processing protein RimM [Porphyromonas uenonis 60-3]
gi|228306881|gb|EEK15994.1| 16S rRNA processing protein RimM [Porphyromonas uenonis 60-3]
Length = 181
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 66/173 (38%), Gaps = 11/173 (6%)
Query: 6 KLVLMATIGTTHGLNGEVY------IDSYANNPIDLNRYVLYSND--NRELRILKMYRKN 57
+L + +G HG+ GE+ +++ ++P Y+ D ++L K
Sbjct: 11 ELTPIGHLGKPHGVRGELTAYLTIELETLCSDPSSEAFYLFAEIDALPVPYQLLSYRSKG 70
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ T + + + A ++ +L+ + + E+ + +G+ G
Sbjct: 71 DSYLLTLAHVADRSIAEKMTGWRLFVPTELLAESEVA---YSWDHFIGFRVITPEGEAVG 127
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + + +L I+++ LIP + V ++ + I + L+
Sbjct: 128 TILEINDQTENILLTIESSDGTQRLIPIHEELVETIDPESKTIQLHIPQGLLD 180
>gi|46206221|ref|ZP_00047565.2| COG0806: RimM protein, required for 16S rRNA processing
[Magnetospirillum magnetotacticum MS-1]
Length = 179
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKMYRKNKR----F 60
LVL+ G HGL+GEV + SY P+ + Y L ++D R L + R
Sbjct: 43 DLVLLGEFGRPHGLHGEVRLKSYTGQPLAIAGYGPLRASDGRTLELADARPAPGRSPDLL 102
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
I G+D+ A L + L R+ E +EDEFF DL + D
Sbjct: 103 IVRVKGVDDRSGAEALNRVTLAIPRERLGTAE-DEDEFFLADLIALTVEDV 152
>gi|320532019|ref|ZP_08032912.1| PRC-barrel domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135783|gb|EFW27838.1| PRC-barrel domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 136
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 4/136 (2%)
Query: 48 LRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDF----KDEELEEDEFFNTDL 103
+ + ++ R+ A F + +A LR ++L + D +D E ++ ++ +L
Sbjct: 1 MTVSRLRFDGFRWFAAFEQARDRTAAEALRGVRLLVETDDDAPGGEDSEDSDESWYRHEL 60
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
+ G+ G+V + A L + +PF V ++ + + +
Sbjct: 61 VGLRALSVSGEDLGEVTDLEPGVAQDRLVVTTPEGDDVAVPFVAALVPAIDPEAGTVTLA 120
Query: 164 PIAAGLNNTTMKNPQY 179
P
Sbjct: 121 PPGGLFPGRGEAEEAR 136
>gi|256818951|ref|YP_003140230.1| 16S rRNA processing protein RimM [Capnocytophaga ochracea DSM 7271]
gi|256580534|gb|ACU91669.1| 16S rRNA processing protein RimM [Capnocytophaga ochracea DSM 7271]
Length = 177
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 7/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+ L + TI + GEV I +++P ++ N+ I K
Sbjct: 1 MTLKDCFYIGTIVSKFSFKGEVLIKLDSDDPEMYEEMESVFIALGNNLVPFFIEKSTLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F I+ A L K+Y +L ++F+ ++ + D
Sbjct: 61 SDLLRVKFEEIETEADAEALLRHKIYLPLAVLP--KLSGNKFYYHEVIGFQVEDVHYGVV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G+ + + ++ EI+N LIP + +++ KI++ ++
Sbjct: 119 GKIVGINDSTSQALFEIENENGNEILIPMADEFIEKIDRAHKKIIVKTPEGLID 172
>gi|148245019|ref|YP_001219713.1| 16S rRNA processing protein RimM [Candidatus Vesicomyosocius
okutanii HA]
gi|146326846|dbj|BAF61989.1| 16S rRNA processing protein RimM [Candidatus Vesicomyosocius
okutanii HA]
Length = 136
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 38 YVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE 97
Y+ + + L I + + K +A I + A D+ LY K+ L+E E
Sbjct: 10 YINVDSHWQTLNISQGRVQAKTIVAQIKDIFDKEQARVYIDINLYIKKSQLLR--LKEGE 67
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
++ DL +E ++ G+V + + G+ ++L ++ K +P+ +++V++
Sbjct: 68 YYWNDLIGLEVVNKAQFVLGKVFNLVDTGSNNVLVVR--GGKEHWVPYISPFLIQVDINN 125
Query: 158 NKILID 163
IL+D
Sbjct: 126 QIILVD 131
>gi|42523588|ref|NP_968968.1| putative 16S rRNA processing protein [Bdellovibrio bacteriovorus
HD100]
gi|59798301|sp|Q6ML96|RIMM_BDEBA RecName: Full=Ribosome maturation factor rimM
gi|39575794|emb|CAE79961.1| putative 16S rRNA processing protein [Bdellovibrio bacteriovorus
HD100]
Length = 177
Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 72/172 (41%), Gaps = 8/172 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDN---RELRILKMYRKNK 58
K+ L+ I HGL G++Y+ ++ + + L + D+ + + + K
Sbjct: 4 SKMKLVGKIREAHGLKGDLYVLVFSGEIAWAKRMKTFGLKAKDSDEIKTFTVERTKPFKK 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
I + + + +A L ++ + + + E F ++++ + + + G+
Sbjct: 64 GLIVKAAEVADRTAAEGLEHMEFFIDDELMVSKPGE--TIFLSEIKNFKLKNPEQTVLGE 121
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G + G +L ++ T KT +PF + +++ + +++D +
Sbjct: 122 IVGFSSNGVQDLLVVETTDGKTAEVPFVDAFIKKIDFKHQAVVMDLPEGLFD 173
>gi|315224333|ref|ZP_07866167.1| 16S rRNA processing protein RimM [Capnocytophaga ochracea F0287]
gi|314945723|gb|EFS97738.1| 16S rRNA processing protein RimM [Capnocytophaga ochracea F0287]
Length = 177
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 7/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+ L + TI + GEV I +++P ++ N+ I K
Sbjct: 1 MTLKDCFYIGTIVSKFSFKGEVLIKLDSDDPEMYEEMESVFIALGNNLVPFFIEKSTLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F I+ A L K+Y +L ++F+ ++ + D
Sbjct: 61 SDLLRVKFEEIETEADAEALLRHKVYLPLAVLP--KLSGNKFYYHEVIGFQVEDVHYGVV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ G+ + + ++ EI+N LIP + +++ KI++ ++
Sbjct: 119 GKIVGINDSTSQALFEIENDNGNEILIPMADEFIEKIDRAHKKIIVKTPEGLID 172
>gi|284045132|ref|YP_003395472.1| 16S rRNA processing protein RimM [Conexibacter woesei DSM 14684]
gi|283949353|gb|ADB52097.1| 16S rRNA processing protein RimM [Conexibacter woesei DSM 14684]
Length = 211
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 8/161 (4%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL-NRYVLYSNDNRELRILKMYRKNKRFIAT 63
D + +G HGL+G ++ I L + + + R RI++ + R I
Sbjct: 18 DDWLNAGRVGRPHGLDGSFHV---TRPRIALLDDGRVLTVAGRVDRIVRRAGTDARPIIR 74
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
+ LR L R D LEEDE++ +E D + G V +
Sbjct: 75 LESCTSRKDLEALRGRDLLVPRADAP--PLEEDEWWPEQIEGCRVHD-GPREVGVVRELR 131
Query: 124 NFGAGSILEIKNTMEKT-FLIPFTKFAVLEVNLQENKILID 163
+ + +LE+ + L+P + AV V++ +I ID
Sbjct: 132 SLPSCDVLEVVRDDGRDPLLVPLIRDAVRSVDVDTRRIEID 172
>gi|167946318|ref|ZP_02533392.1| 16S rRNA-processing protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 99
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ K K IA G D+ A+ L+D K+ +R LE E++ TDLE +
Sbjct: 7 RASAKAKGVIAKIQGCDDRDQAAALQDSKIAIRRAQLPA--LEAGEYYWTDLEGLRVETL 64
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFT 146
G G+V ++ GA ++ +K E+ +IP+T
Sbjct: 65 DGVELGRVSYLFETGANDVVVVK--GERERMIPYT 97
>gi|291295396|ref|YP_003506794.1| 16S rRNA processing protein RimM [Meiothermus ruber DSM 1279]
gi|290470355|gb|ADD27774.1| 16S rRNA processing protein RimM [Meiothermus ruber DSM 1279]
Length = 162
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+ + + IG +G+ G + + P+ + +Y I ++ + + +
Sbjct: 2 RRIEIGRIGKAYGMAGGLK---FRGEPVIFDLERIYLEGLGYRAIEEIEEHSGEIVLFLT 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G++ A +L L++YA + D LEE E++ +L F G+ +G+V V +
Sbjct: 59 GVEGRQEAEQLVGLRVYADQADLP--PLEEGEYYYFELIGRPVF-VDGQPFGEVVDVED- 114
Query: 126 GAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA L IK KT+++PF V ++ + I I+ I L+
Sbjct: 115 GAQERLIIKARGASLRAQSKTYMVPFQAPYVK---VEADGIYIESIPGLLD 162
>gi|325954472|ref|YP_004238132.1| ribosome maturation factor rimM [Weeksella virosa DSM 16922]
gi|323437090|gb|ADX67554.1| Ribosome maturation factor rimM [Weeksella virosa DSM 16922]
Length = 174
Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR--ELRILKMY-RKNKRFIATF 64
+ I HG G V I + P + V ++ + I + + + + F
Sbjct: 9 LGKITKKHGFKGNVIIHLDTDEPELYSTLESVFIESNGKLIPFFIESVQSYQGDKLLVKF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +L + LY +LE F+ ++ FD+ G + + +
Sbjct: 69 EDFE-ANEVDKLINRSLYLPLNTLP--KLEGTSFYYHEVIGYTIFDQTNTEIGTIKSIND 125
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + E+ + K LIP +LEV+ +LI+ L
Sbjct: 126 SAAQAFFEV-DANGKQILIPMIDQWILEVDRPNKAMLIEIPDGLLE 170
>gi|34762813|ref|ZP_00143799.1| 16S rRNA processing protein rimM [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887515|gb|EAA24599.1| 16S rRNA processing protein rimM [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 173
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISDLDNIEVLVGNKVILELTDSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLISDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDVDVFIKNIDFENKKMLVDTIEGM 166
>gi|222823994|ref|YP_002575568.1| 16S rRNA processing protein [Campylobacter lari RM2100]
gi|222539216|gb|ACM64317.1| 16S rRNA processing protein [Campylobacter lari RM2100]
Length = 158
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 20 NGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDL 79
G V + + ++ + + N+++ +K + K + + F G +++ +A L ++
Sbjct: 2 KGYVKLHNLSDFYEQFKIGAKFFDINQKIYTIKAFDKTRSLVL-FEGFESVEAAKILTNI 60
Query: 80 KLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME 138
L+ + K+ +L++DE+F D+ + + + K G V + GAG + IK +
Sbjct: 61 TLFQTIEATKETCKLKKDEYFYFDIIGCDVIENE-KKLGVVEDILENGAGFLFCIKCDEK 119
Query: 139 -----KTFLIPFTKFAVLEVNLQENKI 160
K F IP+ + +V+++ KI
Sbjct: 120 LQAKVKNFYIPYVDKYIQKVDVENKKI 146
>gi|309800034|ref|ZP_07694232.1| 16S rRNA processing protein RimM [Streptococcus infantis SK1302]
gi|308116354|gb|EFO53832.1| 16S rRNA processing protein RimM [Streptococcus infantis SK1302]
Length = 103
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
I+ + + L ++ D L+E EF+ ++ +E ++ G + + GA
Sbjct: 4 INDIEKYKGYSLKVAEENLND--LDEGEFYYHEIIGLEVYEGD-NLIGTIKEILQPGAND 60
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ +K ++ L+P+ VL V++ N++ ++ + +
Sbjct: 61 VWVVKRKGKRDLLLPYIPPVVLNVDIPNNRVDVELLEGLDDED 103
>gi|213962177|ref|ZP_03390441.1| 16S rRNA processing protein RimM [Capnocytophaga sputigena Capno]
gi|213955183|gb|EEB66501.1| 16S rRNA processing protein RimM [Capnocytophaga sputigena Capno]
Length = 176
Score = 103 bits (259), Expect = 9e-21, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 7/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATF 64
+ TI + GEV I +++P ++ N+ + K + F
Sbjct: 9 VGTIVSKFSFKGEVLIKLDSDDPEMYEELESVFIALGNNLVPFFVEKSSLHKSDLLRVKF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+++ A L K+Y +L ++F+ ++ E D G++ + +
Sbjct: 69 EEVNSEADADALLKHKIYLPLAALP--KLSGNKFYYHEVIGFEVEDINYGKVGKIVSIND 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ EI+N K LIP + +V+ KI++ ++
Sbjct: 127 TTFQPLFEIENEEGKEILIPMNDEFIEKVDRPNQKIIVKTPDGLID 172
>gi|261879102|ref|ZP_06005529.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270334284|gb|EFA45070.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 173
Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 14/178 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ + + + +G HG+ GE+ + ++ D ++L D + + +
Sbjct: 1 MIRQEDVYPIGQLGKPHGVKGEIS-FWFTDDVFDRVDADWLLVEIDGILVPFFMEEYRFR 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQ--DFKDEELEEDEFFNTDLEEMETFDR-Q 112
+ + F +D A EL K+Y R D D+ L + + D
Sbjct: 60 SDELALVKFEDVDTEVRARELTGCKVYFPRAFADAVDDHLA-----WAQIIGYQIIDAKS 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G G V GV + A ++ + E LIP + + +++ I ++ L+
Sbjct: 115 GVMVGTVSGVDDSTANTLFHVSTPEEGELLIPADEELITDIDKTTRHITMNLPEGLLD 172
>gi|284036304|ref|YP_003386234.1| 16S rRNA processing protein RimM [Spirosoma linguale DSM 74]
gi|283815597|gb|ADB37435.1| 16S rRNA processing protein RimM [Spirosoma linguale DSM 74]
Length = 197
Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 8/193 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNR--ELRILKMY-R 55
M K D + I THG++GE+ + +N + VL I +
Sbjct: 1 MTK-DDCYQLGHITKTHGVSGELVLFLDVDNAAEYADLESVLLEVKGELIPYFIESIAIV 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K R I F +D I A L + + + + +E F+ ++ + D +
Sbjct: 60 KGSRAIIAFEDVDTIEQAERLINCGAFLPLDELEPIT-DETRFYFHEIVGYQVVDAEAGE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G V GVY A ++ + + K LIP V V+ K+ + L
Sbjct: 119 LGTVQGVYAMNAQDLIMM-DYHGKEVLIPINSDIVRTVDRANQKLNVALPNGLLEIYMED 177
Query: 176 NPQYDCPLDSAGK 188
N + G
Sbjct: 178 NAKPGEGEQVNGD 190
>gi|256845841|ref|ZP_05551299.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_36A2]
gi|256719400|gb|EEU32955.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_36A2]
Length = 173
Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISNLDNIEVLIGNKVILELADSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLVSDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDVDVFIKNIDFENKKMLVDTIEGM 166
>gi|183221049|ref|YP_001839045.1| 16S rRNA-processing protein RimM [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167779471|gb|ABZ97769.1| Putative 16S rRNA processing protein RimM [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 171
Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYS-----NDNRELRILKMYRKNKRFIATF 64
+ G++HG+ G + + + L + + I + F+
Sbjct: 3 VGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLVKI 62
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK-YWG-QVCGV 122
G D + + R L K++D E E ++ DL + ++ K ++ V
Sbjct: 63 KGYDTPETVVKYRGYSLLWKKEDLPKP--NEGEIYSEDLIGLLVISKETKQPLNYKITQV 120
Query: 123 YNFGAGSILEIKN--TMEKTFLIPFTKFAVLEVNLQENKI 160
+ A ILE K +T L+PF V + +L+ I
Sbjct: 121 MDNPAHPILECKPIQGEGETILVPFLNQFVGDWDLENQTI 160
>gi|322435745|ref|YP_004217957.1| 16S rRNA processing protein RimM [Acidobacterium sp. MP5ACTX9]
gi|321163472|gb|ADW69177.1| 16S rRNA processing protein RimM [Acidobacterium sp. MP5ACTX9]
Length = 202
Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 30/206 (14%)
Query: 4 LDK--LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----------YVLYSNDNRELRI- 50
+++ ++A + G GEV + + P + + + R +
Sbjct: 1 MEERSWTVLAHLLRPQGRRGEVLAELLTDFPERFEDSLAVSLAKPGFSGTAGEARAATVT 60
Query: 51 ---LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEME 107
L + + R + + +GID+I+ A L L + R D ELEE + DL
Sbjct: 61 GFWLPVGKNQGRVVLSLAGIDSINLAETLNGLDVLIPRSD--RMELEEGAEYIDDLVGCT 118
Query: 108 TFDRQGKYWGQVCGVY-----NFG-----AGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
+D G V V + G A +L + E LIP+ + ++ +++
Sbjct: 119 VYDGD-VEIGVVESVDFPTTPDGGRRLDDAAPLLSVITANEDEVLIPYVQQFLVSLDVDA 177
Query: 158 NKILIDPIAAGLNNTTMKNPQYDCPL 183
+I + + GL + P+
Sbjct: 178 KRIEMK-LPEGLIELNLTEPKSGEQS 202
>gi|237744032|ref|ZP_04574513.1| ribosome maturation factor rimM [Fusobacterium sp. 7_1]
gi|229431261|gb|EEO41473.1| ribosome maturation factor rimM [Fusobacterium sp. 7_1]
Length = 171
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRFI 61
+++ + +H L GEV + S +N L N+ +L D+++ + ++ ++I
Sbjct: 1 MIVAGKVLGSHNLKGEVKVISDLDNIEVLVGNKVILELADSQQKLLTVKKIEHLVANKWI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVC 120
+F I N E+R+ + +R +EEDE+ +D+ + +D +G +Y G++
Sbjct: 61 FSFEEIKNKQDTIEIRNANIKVRRD---IVGIEEDEYLVSDMIGFKVYDVKGDEYLGEIT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 118 EIMDTTAHDIYVIE-SEEFETMIPDVDVFIKNIDFENRKMLVDTIKGM 164
>gi|169824225|ref|YP_001691836.1| 16S rRNA processing protein [Finegoldia magna ATCC 29328]
gi|167831030|dbj|BAG07946.1| 16S rRNA processing protein [Finegoldia magna ATCC 29328]
Length = 142
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 6/145 (4%)
Query: 26 DSYANNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYA 83
+N + + ++ I F ++I+ + LY
Sbjct: 2 RPLTDNIERFDEDICYYLGDKKVKVTIQNYRMYKGFLYIDFEEFNDINEVLGFKKQYLYI 61
Query: 84 KRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLI 143
+D EL++ F+ DL ++ + G+Y G + V + + + IK EK F+I
Sbjct: 62 DEKD--RYELKDGSFYIDDLIGLKAY-FNGEYIGDLVDVISIYSNDVYVIK-NDEKEFMI 117
Query: 144 PFTKFAVLEVNLQENKILIDPIAAG 168
P K + +++L+ I + I
Sbjct: 118 PAVKEFIKKIDLENGLIDVVIIEGM 142
>gi|94992221|ref|YP_600320.1| 16S rRNA processing protein rimM [Streptococcus pyogenes MGAS2096]
gi|94545729|gb|ABF35776.1| 16S rRNA processing protein rimM [Streptococcus pyogenes MGAS2096]
Length = 103
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGS 129
I++ + + L + + +L+E EF+ + M +++ G V + GA
Sbjct: 4 INAIEKYKGYTLKVSKDN--QGDLQEGEFYYHQIIGMAVYEKD-VLIGHVKEILQPGAND 60
Query: 130 ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ +K ++ L+P+ VL V++ ++ ++ + +
Sbjct: 61 VWVVKRQGKRDLLLPYIPPVVLSVDVPNKRVDVELMEGLDDED 103
>gi|148926677|ref|ZP_01810358.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845196|gb|EDK22291.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 151
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDNRELRILKMYRKNKR 59
M + V +A +G T GL G V + + ++ + + + +E+ +K Y +
Sbjct: 1 MSE-KDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKIKHYNTSNS 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ F ++I A EL +L L+ + + +L++DEFF D+ E E F+ K G+
Sbjct: 60 TVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFEED-KRLGK 117
Query: 119 VCGVYNFGAGSILEIKNTME 138
V + GA + EI++ +
Sbjct: 118 VVDILETGASYLFEIQSDEK 137
>gi|19703629|ref|NP_603191.1| 16S rRNA processing protein rimM [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296329436|ref|ZP_06871925.1| 16S rRNA processing protein RimM [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|22001902|sp|Q8RGK8|RIMM_FUSNN RecName: Full=Ribosome maturation factor rimM
gi|19713739|gb|AAL94490.1| 16S rRNA processing protein rimM [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153445|gb|EFG94275.1| 16S rRNA processing protein RimM [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 173
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISDLDNIEVLVGNKVILELADSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLVSDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDVDVFIKNIDFENRKMLVDTIEGM 166
>gi|291276570|ref|YP_003516342.1| putative 16S rRNA processing protein [Helicobacter mustelae 12198]
gi|290963764|emb|CBG39599.1| putative 16S rRNA processing protein [Helicobacter mustelae 12198]
Length = 186
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 16/173 (9%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYR 55
+L+ +A +G + GL+G + + P + N L + K
Sbjct: 6 TSPSELIEVAKLGRSVGLDGGMKCQLLTDFPEIFQNGHFFFVFSPIKRSNIPLTLKKFLP 65
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGK 114
+ + I F I N A + LYA +D + L ++EFF D+ + K
Sbjct: 66 QKQ--IIQFDQITNPEYAKHFTNQILYATLEDTRKFCHLAKEEFFWFDIIGCSVIESD-K 122
Query: 115 YWGQVCGVYNFGAGSILEIK------NTMEKTFLIPFTKFAVLEVNLQENKIL 161
G V + L IK K FL+P+ + +L + + I
Sbjct: 123 TLGIVKDILRIANTDYLVIKTHQSLTPPHSKEFLLPYLQHFILYADPLKKIIT 175
>gi|237742504|ref|ZP_04572985.1| 16S rRNA processing protein rimM [Fusobacterium sp. 4_1_13]
gi|229430152|gb|EEO40364.1| 16S rRNA processing protein rimM [Fusobacterium sp. 4_1_13]
Length = 173
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISDLDNIEVLIGNKVILELTDSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + ++ +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRN---IVGIGEDEYLISDMIGFKVYNVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDVDVFIKNIDFENRKMLVDTIEGM 166
>gi|256372271|ref|YP_003110095.1| 16S rRNA processing protein RimM [Acidimicrobium ferrooxidans DSM
10331]
gi|256008855|gb|ACU54422.1| 16S rRNA processing protein RimM [Acidimicrobium ferrooxidans DSM
10331]
Length = 156
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-NRYVLYSNDNRELRILKMYRKNKRFIA 62
+ V + IG HG+ G V + ++ P ++ +D + I ++ + R I
Sbjct: 1 MSSRVRIGVIGRPHGVKGAVTLHHVSDVPGRFVADAHVWLDDEVAMVITEVRGQPDRPIV 60
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
G+++ +A ELR L+A+R D + DL D G G++ V
Sbjct: 61 RLRGVESREAAEELRGHSLWAERVALPDGMVI-----VPDLVGARLVDADGVDRGRIVAV 115
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
A +L ++ L+P + +V + ++ D L++
Sbjct: 116 EANPASELLVLEGGG----LVPSI--FITQV--ADGYVVADLPPGLLDD 156
>gi|332297549|ref|YP_004439471.1| Ribosome maturation factor rimM [Treponema brennaborense DSM 12168]
gi|332180652|gb|AEE16340.1| Ribosome maturation factor rimM [Treponema brennaborense DSM 12168]
Length = 195
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 35/189 (18%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSNDNRELRILKMYRKNKRF 60
++ V + I HGL+G + + S + + + D ++ ++ +
Sbjct: 1 MEHFV-VGIIRGAHGLSGNLKVVSTSGEYGHFAGMKEVTVRKGDVQKSCKIEFAEEGTGV 59
Query: 61 I-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG------ 113
+ +GID A ++ R+ DE++ DL+ G
Sbjct: 60 LYLKCAGIDTAEDAKRYTGWEIIVPRES--ACPCAPDEYYIEDLKGCALVYCTGSAQDGL 117
Query: 114 ------KYWGQVCGVYNFGAGSILEI----------------KNTMEKTFLIPFTKFAVL 151
G + V GAG +LE+ +T L+PF + +
Sbjct: 118 AAGSAPTEVGTITDVLEGGAGDLLEVALAESCELLAPDVRQMAGGDPRTVLVPFKREFIG 177
Query: 152 EVNLQENKI 160
V+++ +
Sbjct: 178 TVDIERKLV 186
>gi|332520062|ref|ZP_08396526.1| 16S rRNA processing protein RimM [Lacinutrix algicola 5H-3-7-4]
gi|332044621|gb|EGI80815.1| 16S rRNA processing protein RimM [Lacinutrix algicola 5H-3-7-4]
Length = 176
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYRK 56
M K D+ + I + GE+ I + P D R
Sbjct: 1 MTK-DECFFLGKIVKKYSFKGELLIKLDTDEPDLYENLDAVFVDVRGNLIPFFTESSQLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F +D A L + Y EL++D+F+ ++ D+
Sbjct: 60 KSELLRVKFEDVDTEADADALIKSECYLPLSTLP--ELDDDKFYFHEIIGFTVEDKNFGT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + GV + A S+ EI LIP + +V+ Q I ++ ++
Sbjct: 118 VGTIKGVNDSTAQSLFEIDRN-GIEILIPMNDEFISKVDKQNKTIFVNTPEGLID 171
>gi|254495799|ref|ZP_05108711.1| truncated 16S rRNA processing protein RimM [Legionella drancourtii
LLAP12]
gi|254354956|gb|EET13579.1| truncated 16S rRNA processing protein RimM [Legionella drancourtii
LLAP12]
Length = 115
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+NK IA G + + L ++++ +++ EEL+ E++ L M+ + +G+
Sbjct: 5 VQNKSIIAQVEGYPERETVARLTNIEIAVQKEQL--EELQSGEYYWHQLIGMDVINAKGE 62
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTK-FAVLEVNLQENKILID 163
+G+V + G+ +L ++ EK LIP+ +L+VN + I +D
Sbjct: 63 SFGRVIEIMPTGSNDVLIVQ--GEKRHLIPYLPGKFILDVNSSQQLITVD 110
>gi|317504705|ref|ZP_07962667.1| 16S rRNA-processing protein [Prevotella salivae DSM 15606]
gi|315664182|gb|EFV03887.1| 16S rRNA-processing protein [Prevotella salivae DSM 15606]
Length = 173
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + +G HG+ GE+ + ++ D Y+L S D I + K
Sbjct: 1 MIKNEDVYRIGKLGKPHGVQGEIS-FLFTDDVFDRVDADYLLLSIDGILVPFFIEEYRFK 59
Query: 57 N-KRFIATFSGIDNIHSASELRDLKLYAKRQ--DFKDEELEEDEFFNTDLEEMETFDR-Q 112
+ + + F ID+ A +L +++ +R D ++ L ++ +R
Sbjct: 60 SAENALVKFEDIDSEGRARQLTGCEVFFERSLSDGAEQGLS-----WAEIIGFTVINRLN 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G + V N ++ EIK T K L+P + + E ++Q +I + L+
Sbjct: 115 DEVVGHITEVDNTTINTLFEIKTTTGKDILVPAHEELIHEADMQRREIRMSIPDGLLD 172
>gi|86141703|ref|ZP_01060227.1| putative 16S rRNA processing protein [Leeuwenhoekiella blandensis
MED217]
gi|85831266|gb|EAQ49722.1| putative 16S rRNA processing protein [Leeuwenhoekiella blandensis
MED217]
Length = 174
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 9/174 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K ++ + I GE+ + P +V ++ + I
Sbjct: 1 MRK-EECFYLGKIVRKFSFKGELLAKLDTDEPEMYEELESVFVEFNGNLVPFFIQSCQLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F ++ A +L + +LY ELE ++F+ ++ + D
Sbjct: 60 KSTLLRIDFEDVNTEEDAEDLVNAELYLPLSMLP--ELEGNKFYYHEIIGFKVNDIYFGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + GV + A ++ EI + K LIP + +V+ I +D +
Sbjct: 118 VGTITGVNDNTAQALFEIDHK-GKEVLIPINDDFIKKVDRSTKTITLDTPEGLI 170
>gi|298207514|ref|YP_003715693.1| 16S rRNA processing protein [Croceibacter atlanticus HTCC2559]
gi|83850150|gb|EAP88018.1| 16S rRNA processing protein [Croceibacter atlanticus HTCC2559]
Length = 174
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 66/175 (37%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K ++ + I + GEV + P +V ++ + + +
Sbjct: 1 MTK-EECFYLGKIVSKFSFRGEVLAKLDTDEPELYTEMESVFVEFNKNLVPFFLERAQLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F ++ A +L +LY +L++D+F+ ++ + D Y
Sbjct: 60 KSTLLRIKFEDVEEEADADDLIGAELYLPLSSLP--KLDDDKFYFHEIIGFKVTDESFGY 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + + +IL I K L+P V +V+ + ++++ ++
Sbjct: 118 VGVIKSINDQTSQTILIIDR-EGKDVLVPLNDDFVTKVDKENKTMILNTPDGLID 171
>gi|315606590|ref|ZP_07881602.1| 16S rRNA processing protein RimM [Prevotella buccae ATCC 33574]
gi|315251731|gb|EFU31708.1| 16S rRNA processing protein RimM [Prevotella buccae ATCC 33574]
Length = 173
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRK 56
M++ +++ + +G HG+ GE+ + ++ D Y++ D I + K
Sbjct: 1 MIRKEEVYKIGRLGKPHGVKGEIAFH-FDDDVFDRTDADYLVLELDEILVPFFIDEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGK 114
N + F GI A EL ++Y R D E+ ++ D GK
Sbjct: 60 NGSTALMLFDGITTQEQARELTGTEVYFPR-RLSDSSDEDMT--WAEIIGFTLTDKATGK 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V ++ E++ K LIP ++ + V+ + +I + L+
Sbjct: 117 AIGTLRAVDETTINTLFEVETADGKNLLIPASEEIINSVDAERKEIAVTLPDGLLD 172
>gi|319941847|ref|ZP_08016168.1| hypothetical protein HMPREF9464_01387 [Sutterella wadsworthensis
3_1_45B]
gi|319804500|gb|EFW01370.1| hypothetical protein HMPREF9464_01387 [Sutterella wadsworthensis
3_1_45B]
Length = 192
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA--NNPIDLNRYVLYSNDN--RELRILKMYRKNKR 59
D+ V + +G G V I A + L +R+ + R
Sbjct: 21 PDEWVELGRTAGAYGFKGWVRIAPLASGEVLEHTRNWELVDTAGVRTPVRVKGLRRHGAG 80
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
IA + G ++ SA LR +K+ R +F E+ + DL ++ G G +
Sbjct: 81 LIAKWDGCESKESADALR-VKVGVLRSNFPQA--GENAVWAIDLVGCTAVNKDGVKLGTI 137
Query: 120 CGVYNFGAGSILEIKNTME----KTFLIPFTKFA-VLEVNLQENKILIDPIAAG 168
+ GA + EI+ K F IP K V+E+ +E +++ D A
Sbjct: 138 LSIGTNGAQDLFEIEYVDAAGVVKRFFIPNVKDVYVVEMKPEEKRVVFDWDPAW 191
>gi|294784976|ref|ZP_06750264.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_27]
gi|294486690|gb|EFG34052.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_27]
Length = 173
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISNLDNIEVLIGNKVILELTDSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I TF I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFTFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLVSDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + + + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDIDVFIKNTDFENRKMLVDTIEGM 166
>gi|256028572|ref|ZP_05442406.1| 16S rRNA processing protein rimM [Fusobacterium sp. D11]
gi|289766492|ref|ZP_06525870.1| ribosome maturation factor rimM [Fusobacterium sp. D11]
gi|289718047|gb|EFD82059.1| ribosome maturation factor rimM [Fusobacterium sp. D11]
Length = 173
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S +N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISDLDNIEVLVGNKVILELADSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRD---IVGISEDEYLVSDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTTAHDIYVIE-SEEFETMIPDVDIFIKNIDFENKKMLVDTIEGM 166
>gi|328951030|ref|YP_004368365.1| Ribosome maturation factor rimM [Marinithermus hydrothermalis DSM
14884]
gi|328451354|gb|AEB12255.1| Ribosome maturation factor rimM [Marinithermus hydrothermalis DSM
14884]
Length = 160
Score = 101 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKNKRFIATFS 65
+L+ +G + L+G + + L ++ ++ I + I +
Sbjct: 4 ILIGRLGKPYALSGGIRF--RTEGEVGLLEHLDRVWIEGKGYRSIEGVEEVGGDLILYLA 61
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ N A EL L +YA LEE ++ L F +G+ +G+V V +
Sbjct: 62 GVTNRTLAEELVGLAVYADEAALP--PLEEGVYYYFQLVGRRVF-VRGEAFGEVAEVRDT 118
Query: 126 GAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
GA +L I+ + + +L+P V ++ + I +DPI L
Sbjct: 119 GAQDVLVIRKGL-REYLVPLQA---PYVEVRADGIHVDPIPGLLEE 160
>gi|254495213|ref|ZP_05108137.1| 16S rRNA processing protein RimM [Polaribacter sp. MED152]
gi|85819565|gb|EAQ40722.1| 16S rRNA processing protein RimM [Polaribacter sp. MED152]
Length = 176
Score = 101 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K ++ + I T + GEV I + P YV + ++ I K
Sbjct: 1 MRK-EECFYLGRIVTKYSFKGEVVIKLDTDEPELYKNMESVYVEFGSNLVPFFIEKSSLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F + + A + +Y +L D+F+ ++ + D
Sbjct: 60 KGNQLRVQFEDVYSEEEADSILKCGIYLPLDLLP--KLSGDKFYFHEVIGFKVMDANYGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + A + EI ++ K IP + +V+ I ++ +
Sbjct: 118 VGSIVHINDKAAQPLFEI-DSNGKEVFIPMIDDFIKKVDRANKTIEVETPEGLIE 171
>gi|126663016|ref|ZP_01734014.1| 16S rRNA processing protein [Flavobacteria bacterium BAL38]
gi|126624674|gb|EAZ95364.1| 16S rRNA processing protein [Flavobacteria bacterium BAL38]
Length = 175
Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I GEV + P +V + I
Sbjct: 1 MRK-EDCFYLGKIAKKFSFKGEVLAYLDTDEPELYQNLESVFVEINKSLVPFFIESSSLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
++F+ F I A E+ ++Y +LE +F+ ++ + D
Sbjct: 60 KEKFLRVRFEDIQTEEEADEIMGSEIYLPLSMLP--KLEGTQFYYHEVIGFDVIDLMRGN 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + + GA + EI + LIP ++ ++ I ++ ++
Sbjct: 118 IGKITAINDSGAQPLFEI-DKNGTEILIPLIDDFIIALDRANKTITLETPEGLVD 171
>gi|281421381|ref|ZP_06252380.1| 16S rRNA processing protein RimM [Prevotella copri DSM 18205]
gi|281404453|gb|EFB35133.1| 16S rRNA processing protein RimM [Prevotella copri DSM 18205]
Length = 173
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ D++ + +G HG+ GE+ + ++ D Y++ D + + K
Sbjct: 1 MIRRDEVYKIGKLGKPHGVKGEIT-FAITDDVFDRVDAEYLVLDIDGILVPFYLEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
N + F ID A +++ R + +E+ ++ D GK
Sbjct: 60 NDENVLVKFEDIDTQEQARNYTGCEVFFPRH---LSDSDEENMSWAEIIGFHLVDAVSGK 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + + E+ LIP + + EV+ ++ +I + L+
Sbjct: 117 VVGTIAHVDDSTLNLLFEVTTDAGDEILIPASNDLIEEVSAEKKEIRMAIPEGLLD 172
>gi|254302691|ref|ZP_04970049.1| 16S rRNA processing protein RimM [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322883|gb|EDK88133.1| 16S rRNA processing protein RimM [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 173
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRF 60
+L++ + +H L GEV + S N L N+ +L D+++ + ++ ++
Sbjct: 2 ELLIAGKVLGSHNLKGEVKVISDLENIEILVGNKVILELADSQQKLLTIKKIEHLVANKW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
I +F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 62 IFSFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLVSDMIGFKVYDVKGDEYLGEI 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 119 TEIMDTAAHDIYVIE-SEEFETMIPDVDVFIKNIDFENRKMLVDTIEGM 166
>gi|288925469|ref|ZP_06419402.1| 16S rRNA processing protein RimM [Prevotella buccae D17]
gi|288337685|gb|EFC76038.1| 16S rRNA processing protein RimM [Prevotella buccae D17]
Length = 173
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRK 56
M++ +++ + +G HG+ GE+ + ++ D Y++ D I + K
Sbjct: 1 MIRKEEVYKIGRLGKPHGVKGEIAFH-FDDDVFDRADADYLVLELDEILVPFFIDEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGK 114
N + F GI A EL ++Y R D E+ ++ D GK
Sbjct: 60 NGSTALMLFDGITTQEQARELTGTEVYFPR-RLSDSSDEDMT--WAEIIGFTLTDKATGK 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V ++ E++ K LIP ++ + V+ + +I + L+
Sbjct: 117 TIGMLRAVDETTINTLFEVETADGKNLLIPASEEIINSVDAERKEIAVTLPDGLLD 172
>gi|28493426|ref|NP_787587.1| 16S rRNA processing protein [Tropheryma whipplei str. Twist]
gi|28476467|gb|AAO44556.1| 16S rRNA processing protein [Tropheryma whipplei str. Twist]
Length = 182
Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR-------ILKMYRKNK- 58
L+ + + +GL+G +++ + P +R+L +L + K
Sbjct: 2 LLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQKK 61
Query: 59 --------RFIATFSGIDNIHSASELRDLKLYAKR-QDFKDEELEEDEFFNTDLEEMETF 109
R++ F + + AS L L A+ +D +D EL ++++ L M+
Sbjct: 62 VGAVTARNRWVIFFEEVRDRTLASTLSGSLLLAEPIEDSRDSEL----WYDSHLVGMKVT 117
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
K G+V GV + +L ++ + L+PF K V V+ + +I+++P
Sbjct: 118 LECRKELGRVVGVEHLPMQDLLVVETKAG-SVLLPFVKSIVTSVS--DGEIIVNPPGGM 173
>gi|163753131|ref|ZP_02160255.1| 16S rRNA processing protein [Kordia algicida OT-1]
gi|161326863|gb|EDP98188.1| 16S rRNA processing protein [Kordia algicida OT-1]
Length = 184
Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
++++ + I + GE+ + P + +V + I K
Sbjct: 10 MRIEDCFYLGKIVKKYSFKGELLAKLDTDQPDLYDDLDAVFVQVGRNFLPFFIEKSSLHK 69
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F ID A +L +LY + +LE ++F+ ++ D
Sbjct: 70 SDLLRLKFEDIDTEEDADQLLKCELYLPLEFLP--KLEGNKFYYHEIIGFTIEDASFGTV 127
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + A + E++ LIP + +V+ + I I+ ++
Sbjct: 128 GKIVSVNDTTAQPLFEVERGSI-EILIPMNDDIIKKVDRERKTIHIEAPEGLID 180
>gi|304382147|ref|ZP_07364658.1| 16S rRNA processing protein RimM [Prevotella marshii DSM 16973]
gi|304336745|gb|EFM02970.1| 16S rRNA processing protein RimM [Prevotella marshii DSM 16973]
Length = 174
Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMY-R 55
M+K + + + +G HG+ GEV ++ ++ D +++ D + + R
Sbjct: 1 MIKKETVYKIGVLGKPHGVKGEVS-FTFTDDVFDRVDADFLILDIDGILVPFFMEEYRFR 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
N+ + F ID A EL +Y R+ + E+ +L D G+
Sbjct: 60 NNETALIKFQDIDTQDKAKELTGCDVYFSRE---KSDHSENNMTWAELIGFTLIDTTTGR 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V ++ + LIP ++ + +++ + +I I L+
Sbjct: 117 LIGKLLSVDAATLNTLFIVGTEEGHERLIPASEELIDKIDARNRQIRICLPEGLLD 172
>gi|258616861|ref|ZP_05714631.1| 16S rRNA processing protein RimM [Enterococcus faecium DO]
Length = 99
Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSIL 131
+ RD L + + +L E+EF+ ++ + G G+V + + GA +
Sbjct: 1 DVEKYRDGILKVSKDN--SVDLAENEFYYHEIIGLHV-LEDGTELGKVKEILSPGANDVW 57
Query: 132 EIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
++ + L+P+ V EV+L+ + ++ +++
Sbjct: 58 VVQRPKKADILLPYIASVVKEVDLEAGVVRVEIPEGLIDDE 98
>gi|325283491|ref|YP_004256032.1| Ribosome maturation factor rimM [Deinococcus proteolyticus MRP]
gi|324315300|gb|ADY26415.1| Ribosome maturation factor rimM [Deinococcus proteolyticus MRP]
Length = 199
Score = 100 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSY--ANNPIDLNRYVLYSNDNRELRILKMYRKNKRFI 61
+ + GL G V + A +DL R + L++ +
Sbjct: 8 PENTTRVGYFLGPQGLKGGVKLFVLGEAEQLVDLPRVWV--EGWGWLKLRRAELLYPGIA 65
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
SGI+ +A++LR +YA + LEE ++ L + D G++ G+V
Sbjct: 66 LHLSGIETREAAADLRGANVYAHDDELPA--LEEGSYYYHQLRGLPVLDSAGEHLGEVVD 123
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN--------KILIDPIAAGL 169
V + G +L + + ++ +P VL ++ ++ D A L
Sbjct: 124 VMDMGHQDLLVVSHDYGESQ-VPLQAPYVL---IEAGEDGEPARVRLTEDTPAGLL 175
>gi|28572462|ref|NP_789242.1| 16s rRNA processing protein RimM [Tropheryma whipplei TW08/27]
gi|28410594|emb|CAD66980.1| probable 16s rRNA processing protein RimM [Tropheryma whipplei
TW08/27]
Length = 182
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR-------ILKMYRKNK- 58
L+ + + +GL+G +++ + P +R+L +L + K
Sbjct: 2 LLRVGVLLRPYGLHGGLFVSVTTDLPDVRFAVSATLFCSRQLTDASDTCSVLTVRALQKK 61
Query: 59 --------RFIATFSGIDNIHSASELRDLKLYAKR-QDFKDEELEEDEFFNTDLEEMETF 109
R++ F + + AS L L A+ +D +D EL ++++ L M+
Sbjct: 62 VGAVTARNRWVIFFEEVRDRTLASTLSGSLLLAEPIEDSRDSEL----WYDSHLVGMKVT 117
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
K G+V GV + +L ++ + L+PF K V V+ + +I+++P
Sbjct: 118 LECRKELGRVVGVEHLPMQDLLVVETKAG-SVLLPFVKSIVTSVS--DGEIMVNPPGGM 173
>gi|257063811|ref|YP_003143483.1| 16S rRNA processing protein RimM [Slackia heliotrinireducens DSM
20476]
gi|256791464|gb|ACV22134.1| 16S rRNA processing protein RimM [Slackia heliotrinireducens DSM
20476]
Length = 185
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 10/180 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-----RYVLYSNDNRELRILKMYRK-- 56
+ +A + + GL G P L +V + D ++ +
Sbjct: 1 MQTWANVAVLASVQGLKGRFVAHPAHGLPFLLEPGMRVSFVPPNLDGPRHVKVRDVQHIS 60
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
++ +F G+ + A L + ++ ED + D+ D
Sbjct: 61 GDDWLVSFKGVKDRTQAEALVGKFCLVDTDELPEDY--EDTLYIDDVAGYAVVDENLGSI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKN 176
G + V + S+L + + LIP +L+++ + IL+ + LN +++
Sbjct: 119 GTLTEVLDMPGQSLLSVDR-DGREVLIPAVDEFILDIDDEAETILVSIPSGLLNLDSLEA 177
>gi|146320665|ref|YP_001200376.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
98HAH33]
gi|145691471|gb|ABP91976.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
98HAH33]
Length = 128
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + ++ E+ I +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFDDKDQFAMEVEIASHRKAKN 61
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
I F G+ +I+ + + L ++ D LE+ EF+ ++ ++ ++
Sbjct: 62 FDIIKFKGMYHINDIEKYKGFSLKIAEENLTD--LEDGEFYYHEIIGLDVYEND 113
>gi|237753412|ref|ZP_04583892.1| 16S:rRNA processing protein RimM [Helicobacter winghamensis ATCC
BAA-430]
gi|229375679|gb|EEO25770.1| 16S:rRNA processing protein RimM [Helicobacter winghamensis ATCC
BAA-430]
Length = 173
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
+A IG + G G+V + ++ P +Y + +L + + IA F I++
Sbjct: 3 VAKIGRSLGFKGDVVLHLLSDFPESFKAGNVYHSQVGDLTLESYSLQKS--IAKFQEINS 60
Query: 70 IHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLE-EMETFDRQGKYWGQVCGVYNFGA 127
A ++ + LY+ +++ K++ +LE++ FF +L + G+ G++ + F
Sbjct: 61 KEEAKQIVNCILYSTQEESKEQCKLEDNAFFWFELIGGLIV--ESGEVLGEIGEIDRFCN 118
Query: 128 GSILEIKNTM-------EKTFLIPFTKFAVLEV 153
L IK K+FLIP+ +L+V
Sbjct: 119 QDYLHIKTNSVLVAQGLPKSFLIPYNTRYILKV 151
>gi|237750337|ref|ZP_04580817.1| ribosome maturation factor rimM [Helicobacter bilis ATCC 43879]
gi|229373867|gb|EEO24258.1| ribosome maturation factor rimM [Helicobacter bilis ATCC 43879]
Length = 220
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 46/200 (23%)
Query: 3 KLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--------------------------- 35
+V++ G + GL G + + P L
Sbjct: 16 TPSNMVVVGKFGRSVGLKGGIRATILTDFPEILASDNVFYIEYVDKLSTILSNNKLNSNN 75
Query: 36 ------------NRYVLYSNDNRELRILKMY-RKNKRFIATFSGIDNIHSASELRDLKLY 82
++ + R L + + + + F I A L ++ Y
Sbjct: 76 TNNTQNKAGLIATKHNPTQENTRAYLPLILKTFHSTKKLVEFKEIIRREEAELLCNMLFY 135
Query: 83 AKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTF 141
+ D ++ LE+DEFF D+ M G G V + L + +K F
Sbjct: 136 STLDDTRELCTLEKDEFFYFDIIGMCVV-EDGINLGIVKDIQEIANTHYLVL----DKHF 190
Query: 142 LIPFTKFAVLEVNLQENKIL 161
LIP+ VL V+L+ +I+
Sbjct: 191 LIPYIDRYVLSVDLENRQII 210
>gi|260494378|ref|ZP_05814509.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_33]
gi|260198524|gb|EEW96040.1| 16S rRNA processing protein RimM [Fusobacterium sp. 3_1_33]
Length = 171
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/168 (21%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILKMYRKN---KRFI 61
+++ + +H L GEV + S N L N+ +L D+++ + ++ ++I
Sbjct: 1 MIVAGKVLGSHNLKGEVKVISDLENIEILVGNKVILELADSQQKLLTVKKIEHLVANKWI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQVC 120
+F I N E+R+ + +R + EDE+ +D+ + +D +G +Y G++
Sbjct: 61 FSFEEIKNKQDTIEIRNANIKVRRD---IVGIGEDEYLVSDMIGFKVYDVKGDEYLGEIT 117
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ + A I I+ + E +IP + ++ + K+L+D I
Sbjct: 118 EIMDTTAHDIYIIE-SEEFETMIPDVDVFIKNIDFENRKMLVDTIEGM 164
>gi|299142454|ref|ZP_07035586.1| 16S rRNA processing protein RimM [Prevotella oris C735]
gi|298576176|gb|EFI48050.1| 16S rRNA processing protein RimM [Prevotella oris C735]
Length = 173
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 73/177 (41%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + +G HG+ GE+ ++++ D Y++ D + + K
Sbjct: 1 MIKQEDVYKIGKLGKPHGVKGELS-FLFSDDVFDRVDADYLVLDIDGILVPFFMEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFF-NTDLEEMETFD-RQG 113
+ + + F I + A +L +++ R + +DE ++ D + G
Sbjct: 60 SNEKALVKFVDIGSEERARQLTGCEVFFPR----NLSDSDDEHVSWAEIIGFAVIDKQNG 115
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G + + + ++ EI+ T L+P + + E ++Q +I + L+
Sbjct: 116 QVVGHIKAIDDTTINTLFEIETTAGNDILLPAHEELIHEADMQRREIRMSIPDGLLD 172
>gi|51246654|ref|YP_066538.1| 16S rRNA processing protein RimM [Desulfotalea psychrophila LSv54]
gi|50877691|emb|CAG37531.1| related to 16S rRNA processing protein RimM [Desulfotalea
psychrophila LSv54]
Length = 112
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F I + + A + + R E++ E++ L E G +G+V
Sbjct: 3 ITLFETIFDRNRAEHVEGRGVLVARDSLP--EIDASEYYWHQLIGKEVVGLDGNSFGKVR 60
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+++ GA I+ + LIP V V E I+IDP +N
Sbjct: 61 EMFSNGAQDIMVVSAPNGDEILIPIIADIV--VETGEEYIVIDPPEGLIN 108
>gi|169837239|ref|ZP_02870427.1| 16S rRNA processing protein rimM [candidate division TM7
single-cell isolate TM7a]
Length = 113
Score = 99.6 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
K+ I F IDN+ SA EL K+ +R E ED+F+ DL +E F K
Sbjct: 2 KKKAILDFEEIDNVDSAKELNGYKVKIRRDLLP--EKSEDDFYIKDLFGLEVFSENNK-I 58
Query: 117 GQVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G++ V A +IL I++ +K +IP V +++ KI + I
Sbjct: 59 GEIVDVMETAAHNILIIEDIDTKKEIMIPLIDEFVTKIDFPNGKIEVTLIDGM 111
>gi|332300666|ref|YP_004442587.1| Ribosome maturation factor rimM [Porphyromonas asaccharolytica DSM
20707]
gi|332177729|gb|AEE13419.1| Ribosome maturation factor rimM [Porphyromonas asaccharolytica DSM
20707]
Length = 181
Score = 99.6 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 65/173 (37%), Gaps = 11/173 (6%)
Query: 6 KLVLMATIGTTHGLNGEVY------IDSYANNPIDLNRYVLYSND--NRELRILKMYRKN 57
+L + +G HG+ GE+ +++ ++P Y+ D ++L K
Sbjct: 11 ELTPIGHLGKPHGVRGELVAYLTIELETLCSDPSCETFYLFAEIDALPVPYQLLSYRSKG 70
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ T + + + A ++ +L+ + + E+ + + + G
Sbjct: 71 DSYLLTLAHVADRSIAEQMTGWRLFVPTELLAESEVA---YSWDHFIGFRVVTPEEELVG 127
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V + +L I+++ LIP + V ++ + I + L+
Sbjct: 128 TILEVNDQTENILLTIESSDGSQRLIPIHEELVEAIDPESKTIQLHIPQGLLD 180
>gi|328947873|ref|YP_004365210.1| ribosome maturation factor rimM [Treponema succinifaciens DSM 2489]
gi|328448197|gb|AEB13913.1| Ribosome maturation factor rimM [Treponema succinifaciens DSM 2489]
Length = 201
Score = 99.6 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 68/190 (35%), Gaps = 36/190 (18%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN---PIDLNRYVLYSND-NRELRILKMYRKNKR 59
+ + ++ + +HG+ GE ++S + + L + ++
Sbjct: 6 MTERFVVGIVRGSHGITGEFKVESTSGEYGHFASMEEVALTDGTAEKTFKVESTKEAAST 65
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET----------- 108
+GI++ A+ K+ R++ +L+++E++ DL+
Sbjct: 66 LYMKLAGINSPEEAARYNRWKIVVPRKN--AHKLQKNEWYIEDLKGCSVWYKKETADNTA 123
Query: 109 --FDRQGKYWGQVCGVYNFGAGSILEI----------------KNTMEKTFLIPFTKFAV 150
D G V V G+G ++EI KN +T +PF +
Sbjct: 124 PAIDEN-SVVGTVTNVTEGGSGYLVEILLSEACSFLDDSIKLNKNGGARTVFVPFKDQFI 182
Query: 151 LEVNLQENKI 160
+V+++ +
Sbjct: 183 GKVDIENKAM 192
>gi|313886763|ref|ZP_07820470.1| 16S rRNA processing protein RimM [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923804|gb|EFR34606.1| 16S rRNA processing protein RimM [Porphyromonas asaccharolytica
PR426713P-I]
Length = 181
Score = 99.6 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 6 KLVLMATIGTTHGLNGEVY------IDSYANNP--IDLNRYVLYSNDNRELRILKMYRKN 57
+L + +G HG+ GE+ +++ ++P + ++L K
Sbjct: 11 ELTPIGHLGKPHGVRGELVAYLTIELETLCSDPSCEPFYLFAEIDALPVPYQLLSYRSKG 70
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ T + + + A ++ +L+ + + E+ + + + G
Sbjct: 71 DSYLLTLAHVADRSIAEQMTGWRLFVPTELLAESEVA---YSWDHFIGFRVVTPEEELVG 127
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ V + +L I+++ LIP + V ++ + I + L+
Sbjct: 128 TILEVNDQTENILLTIESSDGTQRLIPIHEELVEAIDPESKTIQLHIPQGLLD 180
>gi|326335858|ref|ZP_08202037.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692002|gb|EGD33962.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 175
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+K + + TI + GEV + + ++ L +V N+ I K
Sbjct: 1 MKKEDCFFVGTIVSKFSFKGEVLVKTDTDDLSLLENVESVFVELGNELIPFFIEKCSLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
F ++ L LY +L ++F+ ++ E +D +
Sbjct: 61 SSLFRIKFEEVNTEKDTETLLKHHLYLPLTLLP--KLSGNKFYYHEVVGFEVYDTKHGLI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V + + + + EI++ + LIP + EVN +E KI+++ ++
Sbjct: 119 GSVTHINDHSSQPLFEIQHN-GREILIPIHDNFLKEVNRKEKKIIVETPEGLID 171
>gi|294783115|ref|ZP_06748439.1| 16S rRNA processing protein RimM [Fusobacterium sp. 1_1_41FAA]
gi|294479993|gb|EFG27770.1| 16S rRNA processing protein RimM [Fusobacterium sp. 1_1_41FAA]
Length = 171
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYR-KNK 58
+++ + +H L GEV + S + ++ V L + L + K+
Sbjct: 1 MIVAGKVLGSHHLKGEVKVIS---DLQNIEMLVGNKVILELEDKQQKLLTVKKIAPLVAN 57
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWG 117
++I TF I N E+R+ + +R + EDE +D+ + +D +G +Y G
Sbjct: 58 KWIFTFEEIKNKQDTIEIRNAAIKVRRD---IVGIGEDEHLVSDMLGFKVYDVKGDEYLG 114
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ + + A I I++ +T +IP + ++ + K+L+D I
Sbjct: 115 EITEIMDTAAHDIYVIESEDFET-MIPDVDVFIKNIDFENKKMLVDTIEGM 164
>gi|320536633|ref|ZP_08036651.1| 16S rRNA processing protein RimM [Treponema phagedenis F0421]
gi|320146509|gb|EFW38107.1| 16S rRNA processing protein RimM [Treponema phagedenis F0421]
Length = 174
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRE-----LRILKMY 54
L++ A I T G+ G V I S++ L + S +E I ++
Sbjct: 2 DLLVTAKIFGTFGVEGFVKISSFSGEYEHLLNLAEIRLRLPKSKTGKETQELLYTIEEIE 61
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QG 113
+ + GID++ +A +L +L R L E EF+ TDL + Q
Sbjct: 62 LRYTDALLKLEGIDSVEAAKKLVGSELLVPRD--MACPLYEGEFYITDL--CNSILVYQE 117
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTF-LIPFTKFAVLEVNLQENKI 160
G + V G G +LEI +PF K + +V++ + ++
Sbjct: 118 TPVGTITSVAEGGGGYVLEISEAETGLVKYVPFIKQFIGKVDIAQKRV 165
>gi|237739757|ref|ZP_04570238.1| ribosome maturation factor rimM [Fusobacterium sp. 2_1_31]
gi|229423365|gb|EEO38412.1| ribosome maturation factor rimM [Fusobacterium sp. 2_1_31]
Length = 171
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYR-KNK 58
+++ + +H L GEV + S + ++ V L + L + K+
Sbjct: 1 MIVAGKVLGSHHLKGEVKVIS---DLQNIEMLVGNKVILELEDKQQKLLTVKKIAPLVAN 57
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
++I TF I N E+R+ + +R + EDE +D+ + +D +Y G
Sbjct: 58 KWIFTFEEIKNKQDTIEIRNAAIKVRRD---IVGIGEDEHLVSDMLGFKVYDVKDNEYLG 114
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ + + A I I++ +T +IP + ++ + K+L+D I
Sbjct: 115 EITEIMDTAAHDIYVIESEDFET-MIPDVDVFIKNIDFENKKMLVDTIEGM 164
>gi|260060777|ref|YP_003193857.1| 16S rRNA-processing protein [Robiginitalea biformata HTCC2501]
gi|88784907|gb|EAR16076.1| 16S rRNA-processing protein [Robiginitalea biformata HTCC2501]
Length = 175
Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I + HG GE+ + P +V N+ + +
Sbjct: 1 MRK-EDCFYLGKIVSRHGFKGELLAKLDTDEPQLYENLESVFVSVGNNLVPFFLRRCQLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
R + F ID+ A+ + +LY Q LE ++F+ ++ D +
Sbjct: 60 KTRLLRLHFEDIDSEADATRILGSELYLPLQMLP--PLEGNKFYYHEVIGFRLNDARRGD 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + GA ++ + + + LIP T + +V+ + I I L+
Sbjct: 118 VGEIRSVNDQGAQALF-VADKDGREVLIPVTDDFIEKVDRDQRVIHIRTPEGLLD 171
>gi|88802686|ref|ZP_01118213.1| 16S rRNA-processing protein [Polaribacter irgensii 23-P]
gi|88781544|gb|EAR12722.1| 16S rRNA-processing protein [Polaribacter irgensii 23-P]
Length = 174
Score = 98.5 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I T + GEV I + P YV + ++ I K
Sbjct: 1 MRK-EDCFYLGKIVTKYSFKGEVVIKLDTDEPELYTEMESVYVEFGSNLVPFFIEKSSLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F + + A + +Y +L D+F+ ++ D
Sbjct: 60 KGNQLRVQFEDVYSDEEADSILKCGIYLPSTLLP--KLSGDKFYFHEVIGFTVVDVNFGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GQ+ + + A + EI IP + +VN + N I ++ ++
Sbjct: 118 VGQIVHINDKAAQPLFEIDR-DGTEIFIPMVDEFIRKVNRENNTIEVETPEGLID 171
>gi|319957119|ref|YP_004168382.1| 16S rRNA processing protein rimm [Nitratifractor salsuginis DSM
16511]
gi|319419523|gb|ADV46633.1| 16S rRNA processing protein RimM [Nitratifractor salsuginis DSM
16511]
Length = 175
Score = 98.5 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 14/160 (8%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
+ I GL G++ + + P + + L I KR + F G +
Sbjct: 10 QVGRIV---GLGGDLKFHLHTDFPQQFKPGITLQSSRGPLTISS--YNPKRGLIRFEGYE 64
Query: 69 NIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGA 127
+ A L + K+Y+ + ++ L+E E F ++ E + +G+ G+V +
Sbjct: 65 SPEKARTLTNTKIYSDEEQTRELCPLKEGEHFWFEVLGAEV-EEEGEPLGKVRDIQRMLD 123
Query: 128 GSILEI-------KNTMEKTFLIPFTKFAVLEVNLQENKI 160
L+I + +FL+P+ +L + ++ +
Sbjct: 124 VDYLQIDTDPALKEAGFPSSFLLPYIPRYILSFDPEKRVL 163
>gi|298735848|ref|YP_003728373.1| 16S rRNA processing protein RimM [Helicobacter pylori B8]
gi|298355037|emb|CBI65909.1| 16S rRNA processing protein RimM [Helicobacter pylori B8]
Length = 184
Score = 98.5 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRI 50
MV + +L+ IG + GLNG + + ++ P L + V S +E I
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCTSSFKEYTI 57
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETF 109
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 -HSYEHAKNLLF-LETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV 115
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILI 162
+ + G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 116 -EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITT 174
Query: 163 DPIAAGLNNT 172
L N+
Sbjct: 175 HNAKTLLENS 184
>gi|317009759|gb|ADU80339.1| 16S rRNA-processing protein RimM [Helicobacter pylori India7]
Length = 184
Score = 98.5 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---------ELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V S + I+
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSIAPLNAFSFASSFKEYII 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|262066557|ref|ZP_06026169.1| 16S rRNA processing protein RimM [Fusobacterium periodonticum ATCC
33693]
gi|291379739|gb|EFE87257.1| 16S rRNA processing protein RimM [Fusobacterium periodonticum ATCC
33693]
Length = 171
Score = 98.5 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKMYR-KNK 58
+++ + +H L GEV + S + ++ V L + L + K+
Sbjct: 1 MIVAGKVLGSHHLKGEVKVIS---DLQNIEMLVGNKVILELEDKQQKLLTVKKIAPLVAN 57
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGKYWG 117
++I TF I N E+R+ + +R + EDE +D+ + +D +Y G
Sbjct: 58 KWIFTFEEIKNKQDTIEIRNAAIKVRRD---IVGIGEDEHLVSDMLGFKVYDVKDDEYLG 114
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ + + A I I++ +T +IP + ++ + K+L+D I
Sbjct: 115 EITEIMDTAAHDIYVIESEDFET-MIPDVDVFIKNIDFENKKMLVDTIEGM 164
>gi|198277599|ref|ZP_03210130.1| hypothetical protein BACPLE_03821 [Bacteroides plebeius DSM 17135]
gi|198270097|gb|EDY94367.1| hypothetical protein BACPLE_03821 [Bacteroides plebeius DSM 17135]
Length = 170
Score = 98.1 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMY-R 55
M++ +++ + I HG+ GEV ++ ++ D Y++ D I + R
Sbjct: 1 MIRKEEVFKIGIINKPHGVKGEVS-FTFTDDIFDRVDCDYLILLLDGILVPFFIEEYRFR 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-----FFNTDLEEMETFD 110
+ + F GID A ++++Y ++ + E+DE FF + D
Sbjct: 60 SDNAALVKFEGIDTAEKARSFTNVEVYFPKKYME----EQDEITSWNFF----VGFKVHD 111
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V V + + I+ + L+P + +L+++ + + +D L+
Sbjct: 112 VHHGDLGEVVDVDDATMNVLFVIE-KEGEELLLPAHEEFILDIDKAQKVLTVDIPEGLLD 170
>gi|305665423|ref|YP_003861710.1| 16S rRNA-processing protein [Maribacter sp. HTCC2170]
gi|88710178|gb|EAR02410.1| 16S rRNA-processing protein [Maribacter sp. HTCC2170]
Length = 175
Score = 98.1 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 8/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATF 64
+ I + + GEV + + P +V N+ I K + F
Sbjct: 9 LGKIVSKYSFKGEVLVKLDTDEPEIYENMESVFVSLGNNLVPFFIDKCRLHKSNLLRIDF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + A + +LY +L ++F+ ++ + D + G + + +
Sbjct: 69 EEVKTENDADRIMGSELYLPLSFLP--KLTGNKFYFHEVIDFTVIDSKHGDIGTIVSIND 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ S+ EI+ +K LIP + V+ I + ++
Sbjct: 127 STSQSLFEIE-KDDKELLIPINDEIITMVDRDNKIINVTTPEGLID 171
>gi|281426031|ref|ZP_06256944.1| 16S rRNA processing protein RimM [Prevotella oris F0302]
gi|281399924|gb|EFB30755.1| 16S rRNA processing protein RimM [Prevotella oris F0302]
Length = 173
Score = 98.1 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 12/177 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + +G HG+ GE+ ++++ D Y++ D + + K
Sbjct: 1 MIKQEDVYKIGKLGKPHGVKGELS-FLFSDDVFDRVDADYLVLDIDGILVPFFMEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFF-NTDLEEMETFD-RQG 113
+ + + F I + A +L +++ R + +DE ++ D +
Sbjct: 60 SNEKALVKFVDIGSEERARQLTGCEVFFPR----NLSDSDDEHVSWAEIIGFAVIDKQND 115
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
K G + V + ++ EI+ T L+P + + E ++Q +I + L+
Sbjct: 116 KVIGHIKAVDDTTINTLFEIETTAGNDILLPAHEELIHEADMQRREIRMSIPDGLLD 172
>gi|300726005|ref|ZP_07059464.1| 16S rRNA processing protein RimM [Prevotella bryantii B14]
gi|299776719|gb|EFI73270.1| 16S rRNA processing protein RimM [Prevotella bryantii B14]
Length = 174
Score = 98.1 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + +G HG+ GEV + ++ D Y++ D + +
Sbjct: 1 MIKEEDIYKIGKLGKPHGVQGEVSFH-FTDDVFDRVDAEYLILKLDGIFVPFFMEEYRFH 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
+ F ID+ A EL ++Y R + +E+ ++ D G
Sbjct: 60 GSETALIKFEDIDSQDRAKELTGSEVYFPRH---LSDSDEENISWAEIVGFALIDAATGN 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + GV + ++ +I+ + LIP + + +V+ + +I+++ L+
Sbjct: 117 TIGTIQGVDDSTINTLFDIETENHQNILIPASDDLLQQVDADKREIIMNLPEGILD 172
>gi|89889427|ref|ZP_01200938.1| 16S rRNA processing protein RimM [Flavobacteria bacterium BBFL7]
gi|89517700|gb|EAS20356.1| 16S rRNA processing protein RimM [Flavobacteria bacterium BBFL7]
Length = 179
Score = 98.1 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATF 64
+ TI GE+ + + P ++ + I + F
Sbjct: 9 VGTIVNKFSFKGELLVKLDTDEPELFTEMESVFIEIGKNLVPFFIESSQLHKSLLLRVKF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
ID+ +A + LY L+ ++F+ ++ D G + GV +
Sbjct: 69 EDIDDEPAADAMMKHDLYLPLTALP--PLKGNKFYFHEIINYNMIDINYGEVGVITGVND 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ ++ E+ + LIP + EVN I ++ +
Sbjct: 127 TTSQALFEV-DQNGTEILIPMNDDFIKEVNRDTKTITVETPDGLIE 171
>gi|217032541|ref|ZP_03438031.1| hypothetical protein HPB128_172g4 [Helicobacter pylori B128]
gi|216945746|gb|EEC24370.1| hypothetical protein HPB128_172g4 [Helicobacter pylori B128]
Length = 181
Score = 97.7 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 21/184 (11%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRILKMYRK 56
++L+ IG + GLNG + + ++ P L + V S +E I Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCASSFKEYTI-HSYEH 59
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKY 115
K + I A EL +L L+ + K L+E EFF DL + + +
Sbjct: 60 AKNLLF-LETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV-EENEI 117
Query: 116 WGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 118 LGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITTHNAKTL 177
Query: 169 LNNT 172
L N+
Sbjct: 178 LENS 181
>gi|149371982|ref|ZP_01891301.1| 16S rRNA processing protein [unidentified eubacterium SCB49]
gi|149355122|gb|EDM43683.1| 16S rRNA processing protein [unidentified eubacterium SCB49]
Length = 174
Score = 97.3 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATF 64
+ + + GE+ + ++P +V + I + F
Sbjct: 9 VGKVVKKYSFKGELLVKLDTDDPEQFLDMESVFVEQHKNLIPFFIESSQLHKSSLLRVQF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A L +LY LE D+F+ ++ D G + V +
Sbjct: 69 DDVYDEAAADALIGKELYLPLTALP--PLEGDKFYYHEVLGFSVHDADFGEVGVITHVND 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + E+ LIP + +V+ + N I ID +
Sbjct: 127 HTSQHLFEVDRN-GIQILIPINDEIITKVDRENNIIFIDAPIGLIE 171
>gi|260889503|ref|ZP_05900766.1| 16S rRNA processing protein RimM [Leptotrichia hofstadii F0254]
gi|260860914|gb|EEX75414.1| 16S rRNA processing protein RimM [Leptotrichia hofstadii F0254]
Length = 107
Score = 97.3 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GIDNI +A EL K+ +R E E+EF+ DL +E F + G+V V
Sbjct: 3 FEGIDNIDAAKELNGYKVKIRRDLLP--ERNEEEFYVKDLFGIEVFSEN-EKIGEVTDVM 59
Query: 124 NFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
A +IL I++ +K +IP V +++ N+I + I
Sbjct: 60 ETAAHNILIIEDIVTKKEIMIPLIDEFVTKIDFSNNRIEVTLIDGM 105
>gi|315587037|gb|ADU41418.1| 16S rRNA processing protein RimM [Helicobacter pylori 35A]
Length = 184
Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 24/190 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRI 50
MV + +L+ IG + GLNG + + ++ P L + V S +E I
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSAAPLNAFFCTSSFKEYTI 57
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETF 109
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 -HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV 115
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI
Sbjct: 116 -EENEVLGKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITT 174
Query: 163 DPIAAGLNNT 172
+ L N+
Sbjct: 175 NNAKTLLENS 184
>gi|295136257|ref|YP_003586933.1| 16S rRNA processing protein RimM [Zunongwangia profunda SM-A87]
gi|294984272|gb|ADF54737.1| 16S rRNA processing protein RimM [Zunongwangia profunda SM-A87]
Length = 154
Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 8/151 (5%)
Query: 25 IDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATFSGIDNIHSASELRDL 79
I + P +V Y+N+ K + A ID+ A ++
Sbjct: 3 IKLDTDEPELYTEMESVFVEYNNNLVPFFFEKTSLHKSTLLRAKIEDIDSEDDAEDMIGC 62
Query: 80 KLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEK 139
+LY L++D+F+ ++ + D G++ + + A ++ EIK +K
Sbjct: 63 ELYLPLTLLPV--LDDDQFYYHEIIGFKVMDATHGDIGEITSINDSTAQALFEIK-KDDK 119
Query: 140 TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
LIP + E++ I + ++
Sbjct: 120 EILIPMNDEFIEEIDKPNKTIHLITPEGLID 150
>gi|300870911|ref|YP_003785782.1| putative RimM protein [Brachyspira pilosicoli 95/1000]
gi|300688610|gb|ADK31281.1| putative RimM protein required for 16S processing [Brachyspira
pilosicoli 95/1000]
Length = 159
Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Query: 17 HGLNGEVYI----DSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
HGLNGEV SY + LN DN+E +I+ + +KNK F+ ID+I
Sbjct: 2 HGLNGEVECTFIDKSYFASLPILNNNTNIYIDNQEYKIINIKKKNKSFVFKLEKIDSIDD 61
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L +Y ++ L+++ F+ ++ D GK +G+V +Y+ + +
Sbjct: 62 AKALIGKDIYIDYENLPS--LDDNSFYEAEIIGYNVIDSNGKLYGKVVDLYSLPSNYVFV 119
Query: 133 IKNTMEK-TFLIPFTKFAVLEVNLQENKILI 162
I K IPF +++ + I
Sbjct: 120 ISLEDSKEEVSIPFVGAYFGKIDKTNRVLEI 150
>gi|224025094|ref|ZP_03643460.1| hypothetical protein BACCOPRO_01828 [Bacteroides coprophilus DSM
18228]
gi|224018330|gb|EEF76328.1| hypothetical protein BACCOPRO_01828 [Bacteroides coprophilus DSM
18228]
Length = 171
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 11/176 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDN--RELRILKMYR 55
M+K +++ + I HG+ GEV ++ ++ D Y++ D I +
Sbjct: 1 MIKKEEVFKIGIINKPHGVKGEVS-FTFTDDIFDRVEDCDYLVLLLDGILVPFFIEEYRF 59
Query: 56 KNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
++ + F GID+ A L ++++Y + D+E + D
Sbjct: 60 RSDNVALVKFEGIDSTEKARTLTNVEVYYPVKFMDDQEEISSWNYF---IGFRVEDIHHG 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V V + + I+N E L+P + +L+++ ++ + +D L+
Sbjct: 117 CLGTVVDVDDATMNVLFVIENGDE-EVLLPAHEEFILDIDRKKKILKVDIPDGLLD 171
>gi|15645763|ref|NP_207940.1| 16S rRNA-processing protein RimM [Helicobacter pylori 26695]
gi|14423883|sp|O25767|RIMM_HELPY RecName: Full=Ribosome maturation factor rimM
gi|2314304|gb|AAD08193.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 184
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---------ELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V S + I+
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSCVSSFKEYII 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIQTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|86130777|ref|ZP_01049376.1| 16S rRNA processing protein RimM [Dokdonia donghaensis MED134]
gi|85818188|gb|EAQ39348.1| 16S rRNA processing protein RimM [Dokdonia donghaensis MED134]
Length = 174
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+K ++ + I + GE+ + P ++ + I
Sbjct: 1 MKKEECFYLGKIVRKYSFKGELLAKLDTDEPEQYVDMDSVFIDFGPSLVPYFIESSQLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F ID A ++ LY EL D+F+ ++ D+
Sbjct: 61 STLLRVKFEDIDTEEDADDMIGAGLYLPLDLLP--ELTGDQFYFHEVVGFTAVDKAFGEI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + +I EI LIP + +V+ + ++ + ++
Sbjct: 119 GTITYVNDSNTQAIFEIDR-DGSQVLIPMVDDFIKKVDRENKQMHFELPEGLID 171
>gi|317014535|gb|ADU81971.1| 16S rRNA-processing protein RimM [Helicobacter pylori Gambia94/24]
Length = 184
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSLKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ ++ K L+E EFF DL + +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEEESKKLCVLKEGEFFYCDLIGLSVVE 116
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 117 KN-EILGKVIEIQRISQTDYFMVETTLNLVGKGLAKIFLIPYRDFYIQEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|253570576|ref|ZP_04847984.1| ribosome maturation factor rimM [Bacteroides sp. 1_1_6]
gi|251839525|gb|EES67608.1| ribosome maturation factor rimM [Bacteroides sp. 1_1_6]
Length = 179
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 72/182 (39%), Gaps = 8/182 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + EE E+ E D +
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNVEVYFPVKH--AEEAEDGELSWNFFVGFRMEDVRHGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V ++ ++ + LIP + ++E+N ++ I ++ LN ++
Sbjct: 118 LGEVVEVDTTTVNTLFVVEQEDGEELLIPAQEEFIVEINQEKKLITVELPEGLLNLEDLE 177
Query: 176 NP 177
Sbjct: 178 ED 179
>gi|317182401|dbj|BAJ60185.1| 16S rRNA processing protein [Helicobacter pylori F57]
Length = 184
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 24/190 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRI 50
MV + +L+ I + GLNG + + ++ P L + V S +E I
Sbjct: 1 MVSM---LLVGRISKSVGLNGGLRLHLESDFPECLKKGVKVSAAPLNAFFCASSFKEYTI 57
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETF 109
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 -HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV 115
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
+ + G+V + ++ K FLIP+ F V E+ LQ+ KI
Sbjct: 116 -EENEILGKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYVKEILLQDKKITT 174
Query: 163 DPIAAGLNNT 172
+ L N+
Sbjct: 175 NNAKTLLENS 184
>gi|188995016|ref|YP_001929268.1| 16S rRNA-processing protein RimM [Porphyromonas gingivalis ATCC
33277]
gi|188594696|dbj|BAG33671.1| probable 16S rRNA processing protein [Porphyromonas gingivalis ATCC
33277]
Length = 175
Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMY 54
M+ LD L + +G HG+ GE A+ L + R++
Sbjct: 1 MIDLDSLEHIGVLGKPHGVQGECNARLTADLSTLFEEEERLFLFFELDALPVPFRLIGYR 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
K + F+GI++ + L+ +R+ F + + EF FDR+G
Sbjct: 61 EKTDDITLLRFAGIESKEEMERYTGVSLFMERRYFDTDSI---EFTWEHFIGFTVFDREG 117
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
++ G + V +L I K L+P + + E+++ K+ + L
Sbjct: 118 RFVGTIDDVDESTLNVLLSITTPEGKELLLPVAEDLLEEIDVPNRKLTMIIPDGLL 173
>gi|110636544|ref|YP_676751.1| 16S rRNA processing protein RimM [Cytophaga hutchinsonii ATCC
33406]
gi|122967030|sp|Q11YV5|RIMM_CYTH3 RecName: Full=Ribosome maturation factor rimM
gi|110279225|gb|ABG57411.1| 16S rRNA processing protein RimM [Cytophaga hutchinsonii ATCC
33406]
Length = 184
Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 10/189 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKM-YR 55
M D ++ I HG+ GEV + ++++ D +V + +
Sbjct: 1 MNPADNILW-GNIIKVHGVKGEVLVQVFSDDLTDYETLESVFVEIKQKQIPFFLSTFNFA 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
KR I +F + + A L +Y E +E + E D
Sbjct: 60 TQKRCILSFEDVTTVEQAKPLVGADIYIPVSKMA--EADESRLSYQAIIGFEVMDTIQGK 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G + + +L + + + LIP T+ V V+++ + +I + GL +
Sbjct: 118 LGVISNFFQKTGQDLLMM-DYQDAEILIPVTEEIVHSVDVKTKQ-VITTLPEGLIEIYLN 175
Query: 176 NPQYDCPLD 184
+ D
Sbjct: 176 EDASEPDAD 184
>gi|254779699|ref|YP_003057805.1| 16S rRNA-processing protein RimM [Helicobacter pylori B38]
gi|254001611|emb|CAX29706.1| 16S rRNA processing protein RimM [Helicobacter pylori B38]
Length = 184
Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSRTSSFKEYTI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ F + E+ LQ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQGKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|150024450|ref|YP_001295276.1| 16S rRNA processing protein RimM [Flavobacterium psychrophilum
JIP02/86]
gi|172048601|sp|A6GWI5|RIMM_FLAPJ RecName: Full=Ribosome maturation factor rimM
gi|149770991|emb|CAL42458.1| 16S rRNA processing protein RimM [Flavobacterium psychrophilum
JIP02/86]
Length = 174
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I GEV + + P +V + + I
Sbjct: 1 MRK-EDCFYLGKIAKKFSFKGEVLVYLDTDEPEMYEDLESVFVEVNKNLVPFFIENSNLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
F+ F +DN A + + ++Y + +L ++F+ ++ E D++
Sbjct: 60 KADFLRVRFEDVDNEEEADAIMNCEVYLPLKMLP--KLTGNKFYFHEVIGFEIEDKRVGV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+G++ + + A + E+ E LIP +++++ + K+++D +
Sbjct: 118 FGKIVSINDTTAQPLFEV-LNGEVEMLIPMIDHFIVKIDRENKKVVMDLPEGLVE 171
>gi|261838475|gb|ACX98241.1| 16s rRNA processing protein [Helicobacter pylori 51]
Length = 184
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 24/190 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRI 50
MV + +L+ IG + GLNG + + ++ P L + V S +E I
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSAAPLNAFFCASSFKEYTI 57
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETF 109
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 -HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV 115
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI
Sbjct: 116 -EENEILGKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYIKEILLQDQKITT 174
Query: 163 DPIAAGLNNT 172
+ L N+
Sbjct: 175 NNAKTLLENS 184
>gi|77412591|ref|ZP_00788878.1| 16S rRNA processing protein RimM [Streptococcus agalactiae CJB111]
gi|77161354|gb|EAO72378.1| 16S rRNA processing protein RimM [Streptococcus agalactiae CJB111]
Length = 99
Score = 95.8 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 74 SELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI 133
+ + L D L++ EF+ ++ ++ + + G++ GA + +
Sbjct: 4 EKYKGFTLKVAEDQLSD--LKDGEFYYHEIIGLDVY-EGXELIGKIKEXLQPGANDVWVV 60
Query: 134 KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
+ ++ L+P+ VLEV+L ++ ++ + +
Sbjct: 61 ERHGKRDLLLPYIPPVVLEVDLSNQRVQVELMEGLDDED 99
>gi|208435044|ref|YP_002266710.1| 16S rRNA processing protein [Helicobacter pylori G27]
gi|208432973|gb|ACI27844.1| 16S rRNA processing protein [Helicobacter pylori G27]
Length = 184
Score = 95.8 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSRASSFKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKR-QDFKDEELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEVESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|332291490|ref|YP_004430099.1| 16S rRNA processing protein RimM [Krokinobacter diaphorus 4H-3-7-5]
gi|332169576|gb|AEE18831.1| 16S rRNA processing protein RimM [Krokinobacter diaphorus 4H-3-7-5]
Length = 174
Score = 95.8 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+K + + I + GE+ + P ++ + I
Sbjct: 1 MKKEDCFYLGKIVRKYSFKGELLAKLDTDEPEIYVDMDSVFIDFGPSLVPYFIESSQLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F ID A ++ LY EL+ D+F+ ++ D+
Sbjct: 61 SSLLRVKFEDIDTEEDADDMIGAGLYLPLDLLP--ELKGDQFYFHEVVGFTAVDKDFGEI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + +I EI LIP + +V+ + ++ + ++
Sbjct: 119 GTITYVNDSNTQAIFEIDR-DGSQVLIPMVDEFIKKVDRENKQMHFELPDGLID 171
>gi|308063932|gb|ADO05819.1| 16S rRNA-processing protein RimM [Helicobacter pylori Sat464]
Length = 184
Score = 95.8 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + + +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I + A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTLEKAKELTNLGLFMSESESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI +
Sbjct: 116 EENEILGKVIEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTN 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|217034226|ref|ZP_03439644.1| hypothetical protein HP9810_2g5 [Helicobacter pylori 98-10]
gi|216943286|gb|EEC22748.1| hypothetical protein HP9810_2g5 [Helicobacter pylori 98-10]
Length = 181
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 19/183 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---------ELRILKMYRKN 57
++L+ IG + GLNG + + ++ P L + V S + I++ Y
Sbjct: 1 MLLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSYASSFKEYIIRSYEHA 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYW 116
K + I A EL +L L+ + K L++ EFF DL + + +
Sbjct: 61 KNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV-EENEIL 118
Query: 117 GQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + ++ K FLIP+ F + E+ LQ+ KI + L
Sbjct: 119 GKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTLL 178
Query: 170 NNT 172
N+
Sbjct: 179 ENS 181
>gi|288801562|ref|ZP_06407004.1| 16S rRNA processing protein RimM [Prevotella melaninogenica D18]
gi|288335604|gb|EFC74037.1| 16S rRNA processing protein RimM [Prevotella melaninogenica D18]
Length = 173
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M+K +++ + IG HG++GE+ + S + Y++ D I + ++
Sbjct: 1 MIKKEEVYKIGRIGKPHGVHGELQLQFSDDVFDVVDADYLILDIDGILVPFFIEEYRFRS 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
+ F I++ A EL +Y R+ ++ + + D
Sbjct: 61 DEIALMKFCDINSDAQACELTGCIVYFPRKLAEEGTDDVS---WAQIVGYSLIDEATNNV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V ++ E+ + LIP + ++ ++ I + + L+
Sbjct: 118 IGKIVAVDETTVNTLFEVSTPEGEEILIPASDELIVATDIASKTITMRIPSGLLD 172
>gi|188527933|ref|YP_001910620.1| 16S rRNA processing protein [Helicobacter pylori Shi470]
gi|209573560|sp|B2UUQ8|RIMM_HELPS RecName: Full=Ribosome maturation factor rimM
gi|188144173|gb|ACD48590.1| 16S rRNA processing protein [Helicobacter pylori Shi470]
Length = 184
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + + +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI +
Sbjct: 116 EENETLGKVVEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTN 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|291546238|emb|CBL19346.1| RimM protein, required for 16S rRNA processing [Ruminococcus sp.
SR1/5]
Length = 83
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 76 LRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKN 135
+ +L+ R++ +EL EDE++ DL ME G+ +G + V GA + +
Sbjct: 2 YKGRELWIPREE--AQELGEDEYYVADLIGMEVLLENGEKFGVLRDVMETGANDVYIVDR 59
Query: 136 TMEKTFLIPFTKFAVLEVNLQ 156
+ L+P VL+V+++
Sbjct: 60 VDGEEILLPAIHDCVLDVDVE 80
>gi|34541051|ref|NP_905530.1| 16S rRNA-processing protein RimM [Porphyromonas gingivalis W83]
gi|48474342|sp|Q7MUW2|RIMM_PORGI RecName: Full=Ribosome maturation factor rimM
gi|34397366|gb|AAQ66429.1| 16S rRNA processing protein RimM, putative [Porphyromonas
gingivalis W83]
Length = 175
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYAN------NPIDLNRYVLYSNDNRELRILKMY 54
M+ LD L + +G HG+ GE A+ L + R++
Sbjct: 1 MIDLDSLEHIGVLGKPHGVQGECNARLTADLSTLFEEEERLFLFFELDALPVPFRLIGYR 60
Query: 55 RKNKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG 113
K + F+GI++ + + L+ +R+ F + + EF FDR+G
Sbjct: 61 EKTDDITLLRFAGIESKEEMEQYTGVSLFMERRYFDTDSI---EFTWEHFIGFTVFDREG 117
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + V +L I K L+P + + E+++ K+ + L
Sbjct: 118 CFVGTIDDVDESTLNVLLSITTPEGKELLLPVAEDLLEEIDVPNRKLTMIIPDGLL 173
>gi|15612141|ref|NP_223793.1| 16S rRNA-processing protein RimM [Helicobacter pylori J99]
gi|14423908|sp|Q9ZK65|RIMM_HELPJ RecName: Full=Ribosome maturation factor rimM
gi|4155670|gb|AAD06656.1| putative [Helicobacter pylori J99]
Length = 181
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 19/183 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL---------RILKMYRKN 57
++L+ IG + GLNG + + ++ P L + V S ++ Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSCASSFKDYVIHSYEHA 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFDRQGKYW 116
K + I A EL +L L+ + K L+E EFF DL + +
Sbjct: 61 KNLLF-LETIRTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLIGLSVV-EGNEIL 118
Query: 117 GQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + ++ T K FLIP+ F + E+ LQ+ KI L
Sbjct: 119 GKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLL 178
Query: 170 NNT 172
N+
Sbjct: 179 ENS 181
>gi|308062426|gb|ADO04314.1| 16S rRNA-processing protein RimM [Helicobacter pylori Cuz20]
Length = 184
Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + + +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFFCTSSFKGYTI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI +
Sbjct: 116 EENEILGKVIEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQDKKITTN 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|109947826|ref|YP_665054.1| 16S rRNA-processing protein RimM [Helicobacter acinonychis str.
Sheeba]
gi|123362565|sp|Q17WC1|RIMM_HELAH RecName: Full=Ribosome maturation factor rimM
gi|109715047|emb|CAK00055.1| 16S rRNA processing protein RimM [Helicobacter acinonychis str.
Sheeba]
Length = 180
Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--------LYSNDNRELRILKMYRKNK 58
++L+ IG + GLNG + + ++ P L + V +S+ + + ++ Y K
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSHASFKDYVIHSYEHAK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYWG 117
+ I+ A EL +L L+ + K L+E EFF DL + + + G
Sbjct: 61 NLLF-LETINTPEMARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVV-EENEILG 118
Query: 118 QVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+V + ++ T + K FLIP+ F + E+ LQ+ KI + L
Sbjct: 119 KVIEIQRISHIDYFMVETTLNLVEKGLAKIFLIPYRDFYIKEILLQDKKITTNNAKTLLE 178
Query: 171 NT 172
N+
Sbjct: 179 NS 180
>gi|84997315|ref|XP_953379.1| 16S rRNA processing protein (RimM homologue) [Theileria annulata
strain Ankara]
gi|65304375|emb|CAI76754.1| 16S rRNA processing protein (RimM homologue), putative [Theileria
annulata]
Length = 235
Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI--------DLNRYVLYSNDNRELRILKMYRK 56
D V++ I T+GL G V + SY ++P + + ++
Sbjct: 89 DDYVVVGKILGTYGLKGHVKVKSYTSHPEIRLCEPGYRYLKIPFNDERVIPINLVTGRFS 148
Query: 57 NKR--FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---DR 111
+ +I F G DNI + + + L LEE+ ++ D+ + + D
Sbjct: 149 GNKDVYIVKFEGFDNIQQSQRITNTYLTVPLSIMP--PLEENTYYARDIIGLGLYLYNDI 206
Query: 112 QGKYWGQVCGVYNF 125
G + +
Sbjct: 207 NKTKLGNIISFIHH 220
>gi|229496820|ref|ZP_04390529.1| 16S rRNA processing protein RimM [Porphyromonas endodontalis ATCC
35406]
gi|229316231|gb|EEN82155.1| 16S rRNA processing protein RimM [Porphyromonas endodontalis ATCC
35406]
Length = 175
Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 14/179 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPI--------DLNRYVLYSNDNRELRILK 52
M +L+L+ +G HG++GE+ + + DL ++ +
Sbjct: 1 MSDTPELILVGRLGRAHGIHGEINLYPSIDEESMFSLAEDRDLFLHLEIDGLPVPFLVED 60
Query: 53 MYRKN-KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
M K + F +D+ A +Y E+ EF D
Sbjct: 61 MRGKAESSLLVKFEDVDSREEAERYDGCSVYVPSDLIG----EDIEFQPQHFIGYTLVDA 116
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTM-EKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + + A +L ++ ++ +IP V +++++ I + +
Sbjct: 117 DDVPVGRVIDIDDNTANLLLIVERKDSDEEVMIPIADELVRYIDVEKQVISLTIPDGLI 175
>gi|323343376|ref|ZP_08083603.1| 16S rRNA processing protein RimM [Prevotella oralis ATCC 33269]
gi|323095195|gb|EFZ37769.1| 16S rRNA processing protein RimM [Prevotella oralis ATCC 33269]
Length = 174
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN----RYVLYSNDNRELRILKMY-R 55
M+K + + + +G HG+ GE+ + ++ D + + + R
Sbjct: 1 MIKQEDVYKIGKLGKPHGVKGEIS-FIFNDDAFDRTNAEYLIIEIEGILIPFYMEEYRFR 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
N+ F ID A EL +Y R + + + D K
Sbjct: 60 SNETAFIKFCDIDTQEQAKELTGHDVYFPRAQADADRSTVS---WAQMHGLRLIDAISDK 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G VC + + + E+ +T LIP + + E++ + +I + L+
Sbjct: 117 PIGTVCRIDDTTLNVLFEVNVADGRTILIPANEDFIEEIDTSKREIRMKLPDGILD 172
>gi|210135308|ref|YP_002301747.1| 16S rRNA-processing protein RimM [Helicobacter pylori P12]
gi|210133276|gb|ACJ08267.1| 16S rRNA processing protein RimM [Helicobacter pylori P12]
Length = 184
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL---------RIL 51
MV + +L+ IG + GLNG + + ++ P L + V S ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSFASSFKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTRSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|207093060|ref|ZP_03240847.1| hypothetical protein HpylHP_09749 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 184
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSRASSFKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|317177897|dbj|BAJ55686.1| 16S rRNA processing protein [Helicobacter pylori F16]
Length = 184
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---------ELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V S + I+
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFSYASSFKEYII 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I + A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTLEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI +
Sbjct: 116 EENEILGKVIEIQRISQIDYFLVETARSLVGKGLAKIFLIPYRDFYIKEILLQDQKITTN 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|258647322|ref|ZP_05734791.1| 16S rRNA processing protein RimM [Prevotella tannerae ATCC 51259]
gi|260852844|gb|EEX72713.1| 16S rRNA processing protein RimM [Prevotella tannerae ATCC 51259]
Length = 177
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 6/175 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M+K D LVL+ I HG++GEV + + ++ D ++ + K
Sbjct: 1 MIKADDLVLIGKITKLHGIDGEV-VCHFTDDVFDRGDSAFLFLELDGLPVPFEWEEYRFK 59
Query: 57 N-KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + F + SA L K+Y ++ + + E L + D +G
Sbjct: 60 GAEDALFKFVEAPDEASARHLVGAKVYYPKEFIPELDESEGLPSYRALTGFQVKDAEGHS 119
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G V V + A +L + + ++ L+P+ +L +L+E + + L+
Sbjct: 120 LGVVNAVDDSSANILLTVVDAEDRVLLLPYHDDFLLHFDLKERILQLRLPEGLLD 174
>gi|332673945|gb|AEE70762.1| 16S rRNA processing protein RimM [Helicobacter pylori 83]
Length = 184
Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 24/190 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRI 50
MV + +L+ IG + GLNG + + ++ P L + V S +E I
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSAAPLNAFSYASSFKEYTI 57
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETF 109
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 -HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV 115
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILI 162
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI
Sbjct: 116 -EENEILGKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYIKEILLQDQKITT 174
Query: 163 DPIAAGLNNT 172
L N+
Sbjct: 175 SNAKTLLENS 184
>gi|317011345|gb|ADU85092.1| 16S rRNA-processing protein RimM [Helicobacter pylori SouthAfrica7]
Length = 181
Score = 95.0 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 21/184 (11%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRILKMYRK 56
++L+ IG + GLNG + + ++ P L + V S +E I Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKEYTI-HSYEH 59
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKY 115
K + I A EL +L L+ + K L+E EFF DL + + +
Sbjct: 60 AKNLLF-LETIHTPERARELTNLGLFMSETESKKLCVLKEGEFFYCDLIGLSVV-EENEI 117
Query: 116 WGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G++ + ++ T + K FLIP+ F V E+ LQ+ KI
Sbjct: 118 LGKIIEIQRISHTDYFMVETTPSLVEKGLAKIFLIPYRDFYVKEILLQDKKITTHNAKTL 177
Query: 169 LNNT 172
L N+
Sbjct: 178 LENS 181
>gi|325286604|ref|YP_004262394.1| Ribosome maturation factor rimM [Cellulophaga lytica DSM 7489]
gi|324322058|gb|ADY29523.1| Ribosome maturation factor rimM [Cellulophaga lytica DSM 7489]
Length = 175
Score = 95.0 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I + + GEV I A+ P ++ N+ I K
Sbjct: 1 MQK-EDCFYLGKIVSKYSFKGEVLIKVDADEPDLYENMESVFISLGNNLVPFFIDKCRLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F + N A + KLY +L ++F+ ++ D
Sbjct: 60 KSSLLRIRFEEVLNESDADRIMGSKLYLPLTMLP--KLTGNKFYFHEVIGFTLQDDVHGD 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + + ++ E++ +K LIP + +V+ + I + ++
Sbjct: 118 IGEITSVNDTTSQALFEVE-KGDKQLLIPINDEIITKVDRENKTIFVTTPEGLVD 171
>gi|325281020|ref|YP_004253562.1| Ribosome maturation factor rimM [Odoribacter splanchnicus DSM
20712]
gi|324312829|gb|ADY33382.1| Ribosome maturation factor rimM [Odoribacter splanchnicus DSM
20712]
Length = 177
Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILK---MY 54
M+ + + + TH L GEV I + ++ ++L I
Sbjct: 1 MITREDCFKVGEVAKTHNLQGEVVITTDSDLLEKYADEPVFLLLDGAPVPFFIADEGLTV 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
R + +I F +D + A L ++ +++ + +E EE + +L E D+ +
Sbjct: 61 RNHTSYIVKFDYVDTLAQAGRLVGCEVLFEKELLEGQEPEESGYDIFELIGFEVKDQVSE 120
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V ++ +L + + M K L+PF++ + +++ + +++L+
Sbjct: 121 ETGEVADVADYSGNVVLTV-SIMNKEILLPFSENYICKIDFEHSRLLV 167
>gi|326798740|ref|YP_004316559.1| ribosome maturation factor rimM [Sphingobacterium sp. 21]
gi|326549504|gb|ADZ77889.1| Ribosome maturation factor rimM [Sphingobacterium sp. 21]
Length = 174
Score = 94.6 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 68/171 (39%), Gaps = 7/171 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANN--PIDLNRYVLYSNDN-RELRILKMYRK-NKR 59
++ + I T GL GEV + ++ +D + L + + NK
Sbjct: 3 IEDCFYIGYISKTRGLKGEVQLYFAFDDYKKLDFDTVFLEIEKKLVPFFVDSFKVQSNKT 62
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F +++I +A EL +Y + E +E+EF+ +DL +D G++
Sbjct: 63 GYFFFEDVEHIDAAKELLRKSVYLPKSKMP--ERDENEFYTSDLVGYLVYDEHHGELGEI 120
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + I + K + P +++++ +++ + +D ++
Sbjct: 121 IAINEYPQQDIAVVHYRF-KELMFPVNDDFIVKIDEEQHVLHVDLPEGLVD 170
>gi|317178550|dbj|BAJ56338.1| 16S rRNA processing protein [Helicobacter pylori F30]
Length = 184
Score = 94.6 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + + I+
Sbjct: 1 MVSM---LLVGRIGKSIGLNGGLRLHLESDFPECLKKGVKVSVAPLNAFFCASSFKEYII 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKD-EELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTM-------EKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T K FLIP+ F + E+ LQ+ KI +
Sbjct: 116 EENEVLGKVIEIQRISQIDYFMVETTRNLVEKGLAKIFLIPYRDFYIKEIFLQDQKITTN 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|332878051|ref|ZP_08445781.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332684013|gb|EGJ56880.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 175
Score = 94.3 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ D++ + + THG++GE+ ++ ++ D YV+ D + + +
Sbjct: 1 MIREDEVYKIGMLTKTHGVSGELN-MAFTDDVFDRVEAEYVVCRMDGILVPFFMEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + F G+D A + +++Y + EE+ E E+ + D
Sbjct: 60 SDTTVLMKFEGVDTEEQARRMVGVEVYFPKA--LTEEVHEGEYTWSYFTGFTVVDTVHGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V + E+ L+P + V +++ + KI + L
Sbjct: 118 LGEVEAVDESTLNVLFEVATPSGGKILLPAGEDLVEDIDHKNRKIYMTLPDGLL 171
>gi|317180880|dbj|BAJ58666.1| 16S rRNA processing protein [Helicobacter pylori F32]
Length = 184
Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + I+
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVGVAPLNAFSCTSSFKEYII 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQIDYFLVETARSLVEKGLAKIFLIPYRDFYIKEILLQDQKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|308184890|ref|YP_003929023.1| 16S rRNA-processing protein RimM [Helicobacter pylori SJM180]
gi|308060810|gb|ADO02706.1| 16S rRNA-processing protein RimM [Helicobacter pylori SJM180]
Length = 184
Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ T + K FLIP+ + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDLYIQEILLQDKKITTR 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|29347414|ref|NP_810917.1| 16S rRNA-processing protein RimM [Bacteroides thetaiotaomicron
VPI-5482]
gi|298385129|ref|ZP_06994688.1| 16S rRNA processing protein RimM [Bacteroides sp. 1_1_14]
gi|48474841|sp|Q8A682|RIMM_BACTN RecName: Full=Ribosome maturation factor rimM
gi|29339314|gb|AAO77111.1| RimM protein [Bacteroides thetaiotaomicron VPI-5482]
gi|298262273|gb|EFI05138.1| 16S rRNA processing protein RimM [Bacteroides sp. 1_1_14]
Length = 179
Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 72/182 (39%), Gaps = 8/182 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + EE E+ E D +
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNVEVYFPVKH--AEEAEDGELSWNFFVGFRMEDVRHGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V ++ ++ + L+P + ++E+N ++ I ++ LN ++
Sbjct: 118 LGEVVEVDTATVNTLFVVEQEDGEELLVPAQEEFIVEINQEKKLITVELPEGLLNLEDLE 177
Query: 176 NP 177
Sbjct: 178 ED 179
>gi|229815342|ref|ZP_04445677.1| hypothetical protein COLINT_02388 [Collinsella intestinalis DSM
13280]
gi|229809122|gb|EEP44889.1| hypothetical protein COLINT_02388 [Collinsella intestinalis DSM
13280]
Length = 171
Score = 93.9 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 10/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKNKRFIAT 63
+A + HG GEV + P+ L R + + +
Sbjct: 8 IARVVRPHGTKGEVLVAPLRGLPLLLTESMQVHLTPPALKRERTSTVESLSVTPEGARVR 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FS N+ A L + A DF+ L+ DL D + G + V
Sbjct: 68 FSCAHNLDDAESLTGCYVLASCDDFELGRLDSA---VGDLLGRSVVDERFGDLGSIVEVM 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + + + L+P ++E+ +E I + + L+
Sbjct: 125 ETPANDVWVLDGSSHGEVLMPVIDEVIVEL-PEEGAITVHIMDGLLD 170
>gi|327405946|ref|YP_004346784.1| Ribosome maturation factor rimM [Fluviicola taffensis DSM 16823]
gi|327321454|gb|AEA45946.1| Ribosome maturation factor rimM [Fluviicola taffensis DSM 16823]
Length = 175
Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 8/167 (4%)
Query: 9 LMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-AT 63
+ I HG GEV + NP D ++ + + KNK F
Sbjct: 8 QLGYIAKLHGYKGEVSLFLDVTNPEDYRTLDAFFIDINGQLTPFFVKSFVLKNKGFAAVK 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
G+D+ + A + Y EL++ F++ ++ + D + G + V
Sbjct: 68 LEGVDSENDAKVILRKSCYLPISILP--ELDDKHFYDHEIIGFKLIDTRFGETGIIEQVI 125
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ +L + +K LIPF V +V+ + + + +
Sbjct: 126 DNSVNPLLLV-MNGDKEILIPFIDGLVQKVDRKAKTLHVTSPEGLIE 171
>gi|261839877|gb|ACX99642.1| 16S rRNA processing protein RimM [Helicobacter pylori 52]
Length = 184
Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + + +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVRVAPLNAFFCASSFKEYTI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I + A EL +L L+ + K L++ EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTLEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ + G+V + ++ K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEILGKVIEIQRISQIDYFLVETARSLIEKGLAKIFLIPYRDFYIKEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKVLLENS 184
>gi|108563513|ref|YP_627829.1| 16S rRNA-processing protein RimM [Helicobacter pylori HPAG1]
gi|107837286|gb|ABF85155.1| 16S rRNA processing protein [Helicobacter pylori HPAG1]
Length = 184
Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRIL 51
MV + +L+ IG + GLNG + + ++ P L + V + + ++
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVI 57
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD 110
Y K + I A EL +L L+ + K L+E EFF DL +
Sbjct: 58 HSYEHAKNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV- 115
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILID 163
+ ++ G+V + ++ T K FLIP+ F + E+ LQ+ KI
Sbjct: 116 EENEFLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTH 175
Query: 164 PIAAGLNNT 172
L N+
Sbjct: 176 NAKTLLENS 184
>gi|255011128|ref|ZP_05283254.1| 16S rRNA-processing protein RimM [Bacteroides fragilis 3_1_12]
gi|313148938|ref|ZP_07811131.1| ribosome maturation factor rimM [Bacteroides fragilis 3_1_12]
gi|313137705|gb|EFR55065.1| ribosome maturation factor rimM [Bacteroides fragilis 3_1_12]
Length = 180
Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + HG++GE+ ++ ++ D Y++ D+ I + +
Sbjct: 1 MIKREDVYKIGLFNKPHGIHGELS-FTFTDDIFDRVDCDYLICRLDDIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D A ++++Y + EE E E + D +
Sbjct: 60 SDSTALVKLEGVDTAERARMFTNVEVYFPVEHV--EEAEPGELSWSFFVGFRVEDVRHGA 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V ++ + LIP + + ++ + I +D L+
Sbjct: 118 LGEVTDVDTSTVNTLFVVDR-DGDELLIPAQEEFIAGIDQKHKIITVDLPEGLLSLDECD 176
Query: 176 NPQ 178
+ +
Sbjct: 177 DEE 179
>gi|319953451|ref|YP_004164718.1| 16S rRNA processing protein rimm [Cellulophaga algicola DSM 14237]
gi|319422111|gb|ADV49220.1| 16S rRNA processing protein RimM [Cellulophaga algicola DSM 14237]
Length = 175
Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K D + I + + GEV I + P + ++ N+ I K
Sbjct: 1 MQKSDCF-YLGKIVSKYSFKGEVLIKLDTDEPEEYENLESVFISLGNNLVPFFIKKSRLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ F I + A + ++Y +L D+F+ ++ D
Sbjct: 60 KSTLLRVRFEEIADESDADRVMGSEIYLPLTMLP--KLTGDKFYFHEVIGFTLLDSVHGD 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + + ++ E K LIP + +V+ + I + ++
Sbjct: 118 IGIIESINDSTSQALFE-ALKDGKQLLIPINDEIITKVDRENKTIHVTTPIGLVD 171
>gi|167751815|ref|ZP_02423942.1| hypothetical protein ALIPUT_00056 [Alistipes putredinis DSM 17216]
gi|167660056|gb|EDS04186.1| hypothetical protein ALIPUT_00056 [Alistipes putredinis DSM 17216]
Length = 163
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNK-RFI 61
L+ +A + G+ G V ++ Y P D + +V + L + R+ K +
Sbjct: 2 LLSVARVSKLFGVEGGVLLNLYTTFPDDFSTEEPLFVKIDSLAVPLFCDRFERRGKTNAL 61
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
ATF+ ID+ A E +LY + +D E DEF+ DL G G++
Sbjct: 62 ATFADIDSARRAEEFIGRELYLEHED-----DENDEFYLEDLIGFRVRI--GTLKGEITD 114
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
Y+ A + E++ K L+P + + ++ + + + +
Sbjct: 115 YYDSEANPLFEVE-IGGKRILVPAVEEFIAGIDFEGRTVKMVLPEGLIE 162
>gi|320450459|ref|YP_004202555.1| 16S rRNA processing protein RimM [Thermus scotoductus SA-01]
gi|320150628|gb|ADW22006.1| 16S rRNA processing protein RimM [Thermus scotoductus SA-01]
Length = 171
Score = 93.1 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ + +Y + + +Y+ + +
Sbjct: 11 RLVEIGRFGAPYALRGGLK---FRGEPVVAHLERVYVEGHGWRAVEDLYQVGDDLVVHLA 67
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+ + A L L++YA+ ++ E ++ L + + G G+V + +
Sbjct: 68 GVSSRELAEPLVGLRVYAEVEELPPLEE--GRYYYFALIGLPVY-VGGLKMGEVVDILDA 124
Query: 126 GAGSILEIKNTMEK-----TFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA +L I+ E+ L+P V ++E I ++PI +
Sbjct: 125 GAQDVLVIRGVGERLRDQTERLVPLQA---PYVRVEEEGIHVEPIPGLFD 171
>gi|172045867|sp|Q1CSB7|RIMM_HELPH RecName: Full=Ribosome maturation factor rimM
Length = 181
Score = 93.1 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 19/183 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRILKMYRKN 57
++L+ IG + GLNG + + ++ P L + V + + ++ Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHA 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYW 116
K + I A EL +L L+ + K L+E EFF DL + + ++
Sbjct: 61 KNLLF-LETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVV-EENEFL 118
Query: 117 GQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + ++ T K FLIP+ F + E+ LQ+ KI L
Sbjct: 119 GKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLL 178
Query: 170 NNT 172
N+
Sbjct: 179 ENS 181
>gi|332878218|ref|ZP_08445946.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332683830|gb|EGJ56699.1| 16S rRNA processing protein RimM [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 174
Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 13/175 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
+ L + TI + GEV I +++P ++ N+ I +
Sbjct: 1 MTLKDCFYIGTIVSKFSFKGEVLIKLDSDDPEMYEEMESVFIALGNNLVPFFIERSSLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F +D A L K+Y L ++F+ ++ D Q Y
Sbjct: 61 SDLLRVKFEEVDTEADADALLKHKIYLPLSALP--PLTGNQFYYHEVIGFTVEDTQYGYV 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIP--FTKFAVLEVNLQENKILIDPIAAGL 169
G++ V + ++ EI++ LIP F + +++ Q K+++ +
Sbjct: 119 GKITAVNDNTFQALFEIEDEAGHQILIPINFLE----KIDRQNQKLIVSTPEGLI 169
>gi|302345021|ref|YP_003813374.1| 16S rRNA processing protein RimM [Prevotella melaninogenica ATCC
25845]
gi|302149078|gb|ADK95340.1| 16S rRNA processing protein RimM [Prevotella melaninogenica ATCC
25845]
Length = 173
Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M+K +++ + IG HG++GE+ + S + Y++ D + + ++
Sbjct: 1 MIKKEEVYKIGRIGKPHGVHGELQLQFSDDVFDVVDADYLILDIDGILVPFFMEEYRFRS 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKY 115
+ F I++ A EL +Y R+ ++ + + D
Sbjct: 61 DEIALMKFCDINSDAQARELTGCIVYFPRKLAEEGTDDVS---LAQIVGYSLIDEATNNV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V ++ E+ + LIP + ++ ++ I + A L+
Sbjct: 118 IGKIVAVDETTVNTLFEVSTPKGEEILIPASDELIVATDIASKTITMRIPAGLLD 172
>gi|294675544|ref|YP_003576160.1| 16S rRNA processing protein RimM [Prevotella ruminicola 23]
gi|294473181|gb|ADE82570.1| 16S rRNA processing protein RimM [Prevotella ruminicola 23]
Length = 181
Score = 92.3 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDN--RELRILKMYRK 56
M+K + + + +G HG+ GE+ + ++ D Y++ D I + K
Sbjct: 13 MIKREDVYKIGKLGKAHGVKGEIS-FLFDDDVFDRTDADYLILDMDGILVPFFIEEYRFK 71
Query: 57 -NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GK 114
+ + F GID A EL ++Y R+ +D ++++ + E D GK
Sbjct: 72 TDDNALMKFEGIDTQERARELTGCEVYFPREMAED---DDEQLSWAAIVGFELIDSNTGK 128
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + + E+++ LIP ++ + V+ ++ +I++ L
Sbjct: 129 AAGKIASVDDTTINILFELEDGK----LIPASEELITNVDTKKQQIIVKLPEGILE 180
>gi|224531726|ref|ZP_03672358.1| 16S rRNA processing protein RimM [Borrelia valaisiana VS116]
gi|224511191|gb|EEF81597.1| 16S rRNA processing protein RimM [Borrelia valaisiana VS116]
Length = 166
Score = 92.3 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K+
Sbjct: 5 GVILSSYGINGYAKVKSISNNFCDFINLKNNKVLLKKSNGFAIEVKVVDVDIKSNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ L +L+ D LEE E++ L + K G+V +
Sbjct: 65 FEGINTPELVKPLIGFELWV--DDSLASSLEEGEYYLGRLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ + LE+K + K F IPF + +++++E I
Sbjct: 122 EYLNSAFLEVKVGI-KFFFIPFLSIYIGDIDVEEKTI 157
>gi|317012926|gb|ADU83534.1| 16S rRNA-processing protein RimM [Helicobacter pylori Lithuania75]
Length = 189
Score = 92.3 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 27/194 (13%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--------------LYSNDNR 46
MV + +L+ IG + GLNG + + ++ P L + V +
Sbjct: 1 MVSM---LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPLNAFSFVSSFKEYVI 57
Query: 47 ELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEE 105
+ ++ Y K + I A EL +L L+ + K L++ EFF DL
Sbjct: 58 KEYVIHSYEHAKNLLF-LETIQTPEKAKELTNLGLFMSEAESKKLCVLKDGEFFYCDLVG 116
Query: 106 METFDRQGKYWGQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQEN 158
+ + + G+V + ++ T + K FLIP+ F + E+ LQ+
Sbjct: 117 LSVV-EENEILGKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDK 175
Query: 159 KILIDPIAAGLNNT 172
KI L N+
Sbjct: 176 KITTHNAKTLLENS 189
>gi|146299060|ref|YP_001193651.1| 16S rRNA processing protein RimM [Flavobacterium johnsoniae UW101]
gi|189040840|sp|A5FKD8|RIMM_FLAJ1 RecName: Full=Ribosome maturation factor rimM
gi|146153478|gb|ABQ04332.1| 16S rRNA processing protein RimM [Flavobacterium johnsoniae UW101]
Length = 174
Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K ++ + I GEV I + P +V ++ I
Sbjct: 1 MRK-EECFYLGKIAKKFSFKGEVLIYLDTDEPELYENLESVFVEHNKHLVPFFIETSSLH 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
F+ F ++ A + +Y +L ++F+ ++ E D++
Sbjct: 60 KGDFLRVRFEDVNTEEDADAIVGNSIYLPLTMLP--KLTGNKFYFHEVIGFEIEDKRLGV 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+G++ + + A + E+ E L+P +++++ + K+++D +
Sbjct: 118 FGKITSINDSSAQPLFEV-LNGEVEILVPMIDHFLVKIDRENKKVIMDLPVGLVE 171
>gi|282858418|ref|ZP_06267598.1| 16S rRNA processing protein RimM [Prevotella bivia JCVIHMP010]
gi|282588866|gb|EFB93991.1| 16S rRNA processing protein RimM [Prevotella bivia JCVIHMP010]
Length = 173
Score = 91.9 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 14/178 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRK 56
M+K +++ + +G HG++GE+ + + ++ D Y++ + I + +
Sbjct: 1 MIKQEEVYKIGRLGKPHGVHGEIQLQ-FNDDVFDTADADYLVLEVEGILVPFFIEEYRFR 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQ--DFKDEELEEDEFFNTDLEEMETFDRQG 113
+ + F ID A +L ++ R D E L + D
Sbjct: 60 SDEIALMKFEDIDTEEKARQLTGCSVFFPRHIVDESSENLS-----WAQIVGYTLLDNNS 114
Query: 114 -KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
K G++CGV + ++ E+++T LIP + V+ + I + L
Sbjct: 115 RKVVGKICGVDDSTVNTLFEVEDTEGGELLIPANDKLITAVDTTQKTITLVIPDGLLE 172
>gi|257457063|ref|ZP_05622241.1| 16S rRNA processing protein RimM [Treponema vincentii ATCC 35580]
gi|257445537|gb|EEV20602.1| 16S rRNA processing protein RimM [Treponema vincentii ATCC 35580]
Length = 174
Score = 91.9 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLN-------RYVLYSNDNR----ELRILKMY 54
++ + T GL G + I+S + R + + + ++ +
Sbjct: 2 DWLITGRVRGTFGLEGFIKIESCSGEYEHFLSLKEIMLRLPVREAEEQCPEITYQVEECV 61
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ + GI++ +A +L + R LE EF+ DL + +G
Sbjct: 62 VRTTDALLKLRGINSPEAAKKLHGADILVPRD--MACPLERGEFYINDLCNSDLV-YKGN 118
Query: 115 YWGQVCGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKI 160
G + V G G +LE+ + KT IPF + ++++ ++
Sbjct: 119 SVGTIADVVEGGGGFLLEVSEAATGKTVYIPFRSQFIGKIDIPAKQV 165
>gi|308183252|ref|YP_003927379.1| 16S rRNA-processing protein RimM [Helicobacter pylori PeCan4]
gi|308065437|gb|ADO07329.1| 16S rRNA-processing protein RimM [Helicobacter pylori PeCan4]
Length = 184
Score = 91.9 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDN----------RELRILKMYRKN 57
+L+ IG + GLNG + + ++ P L + V S +E I Y
Sbjct: 5 LLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSAAPLNAFFCASSFKEYTI-HSYEHA 63
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYW 116
K + I A EL +L L+ ++ K L++ EFF DL + + +
Sbjct: 64 KNLLF-LETIHTPEKAKELTNLGLFMSEEESKKLCVLKDGEFFYCDLVGLSVV-EENEIL 121
Query: 117 GQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + ++ K FLIP+ F + E+ LQ+ KI L
Sbjct: 122 GKVIEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLL 181
Query: 170 NNT 172
N+
Sbjct: 182 ENS 184
>gi|224534527|ref|ZP_03675103.1| 16S rRNA processing protein RimM [Borrelia spielmanii A14S]
gi|224514204|gb|EEF84522.1| 16S rRNA processing protein RimM [Borrelia spielmanii A14S]
Length = 166
Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG I S + + N VL N E++++ + K+
Sbjct: 5 GVILSSYGVNGYARIKSISNNFCDFINLKNNKVLLKKSNGFAIEVKVVDVNIKSNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ L +L+ D L+E E++ L + + G+V +
Sbjct: 65 FEGINTPELVKPLIGFELWV--DDSLASSLKEGEYYLGKLIGYTVVN-DNRKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE+K + K F IPF + +++ E I
Sbjct: 122 EYLNNVFLEVKVGI-KFFFIPFLSIYIGDIDTGEKTI 157
>gi|325851938|ref|ZP_08171046.1| 16S rRNA processing protein RimM [Prevotella denticola CRIS 18C-A]
gi|325484655|gb|EGC87570.1| 16S rRNA processing protein RimM [Prevotella denticola CRIS 18C-A]
Length = 173
Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M++ +++ + IG HG++GE+ + S Y+L D + + ++
Sbjct: 1 MIRKEEVYKIGRIGKPHGVHGELQMQFSDDVFDAVDADYLLLDIDGILVPFFMEEYRFRS 60
Query: 58 KRFIA-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKY 115
+ F +D A EL ++Y R+ ++ + + D GK
Sbjct: 61 DEVVLMKFCDVDTEAQARELTGSEVYFPRKLAEEGTADVS---WAQVVGYTLVDKATGKT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + ++LE+ ++ LIP + +++V+ ++ I + A L+
Sbjct: 118 VGRIVSIDETTINTLLEVMTPEDEERLIPASTDLIVKVDAEKQTIAMRIPAGLLD 172
>gi|325661105|ref|ZP_08149732.1| hypothetical protein HMPREF0490_00465 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472612|gb|EGC75823.1| hypothetical protein HMPREF0490_00465 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 122
Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNR--ELRILKMYRKNKR 59
+++ + I +THG+ GEV + ++ ++VL L + ++ +
Sbjct: 22 MEQQFQVGVISSTHGVRGEVKVFPTTDDVKRFKKLKHVLLDTGKEQLPLEVEQVKFFKQF 81
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDF 88
I F GIDNI+ + + L R+D
Sbjct: 82 AILKFKGIDNINDIEKYKGKSLLVDRKDA 110
>gi|269123616|ref|YP_003306193.1| 16S rRNA processing protein RimM [Streptobacillus moniliformis DSM
12112]
gi|268314942|gb|ACZ01316.1| 16S rRNA processing protein RimM [Streptobacillus moniliformis DSM
12112]
Length = 163
Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 13/171 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRY-VLYSNDNRELRILKM----YRKNK 58
++ L+L+ TI TH L G + + + +L V+ ND +++I K+ K
Sbjct: 1 MEDLILIGTITGTHRLLGTLKVRTIFPLLDELKNLNVIIKNDFNDIKIAKVENVKGITGK 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
R + I N+ A L K+Y + + E +E + + G+
Sbjct: 61 RALIDIDKIKNVDEAKSLIGYKIYVRADLIPEYEEDES------IIGYRV-LHDLEDIGE 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
V + + A IL + EK LIPF V E+ + I ++ + +
Sbjct: 114 VVDIMDTAAHPILVV-IKEEKEVLIPFIDVFVKEIEYDKKLIKVELLEGMI 163
>gi|325269596|ref|ZP_08136211.1| 16S rRNA processing protein RimM [Prevotella multiformis DSM 16608]
gi|324988074|gb|EGC20042.1| 16S rRNA processing protein RimM [Prevotella multiformis DSM 16608]
Length = 173
Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M++ +++ + IG HG++GE+ + S Y+L D + + ++
Sbjct: 1 MIRKEEVYKIGRIGKPHGVHGELQMQFSDDVFDAVDADYLLLDIDGILVPFFMEEYRFRS 60
Query: 58 KRFIA-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKY 115
+ F +D A EL ++Y R+ ++ + + D GK
Sbjct: 61 DEVVLMKFCDVDTEAQARELTGSEVYFPRKLAEEGTADVS---WAQVVGYTLVDKATGKT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + ++LE+ ++ LIP + +++++ ++ I + A L+
Sbjct: 118 VGRIVSIDETTINTLLEVMTPEDEERLIPASTDLIVKIDAEKQTIAMRIPAGLLD 172
>gi|307637818|gb|ADN80268.1| 16S rRNA processing protein [Helicobacter pylori 908]
gi|325996416|gb|ADZ51821.1| 16S rRNA processing protein [Helicobacter pylori 2018]
gi|325998004|gb|ADZ50212.1| 16S rRNA processing protein [Helicobacter pylori 2017]
Length = 181
Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV---------LYSNDNRELRILKMYRKN 57
++L+ IG + GLNG + + ++ P L + V + + ++ Y
Sbjct: 1 MLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHA 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFDRQGKYW 116
K + I A EL +L L+ + K L+E EFF DL + ++ +
Sbjct: 61 KNLLF-LETIHTPEKAKELANLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEKN-EIL 118
Query: 117 GQVCGVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V + ++ T + K FLIP+ F + E+ LQ+ KI L
Sbjct: 119 GKVIEIQRISQTDYFMVETTLNLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLL 178
Query: 170 NNT 172
N+
Sbjct: 179 ENS 181
>gi|327313117|ref|YP_004328554.1| 16S rRNA processing protein RimM [Prevotella denticola F0289]
gi|326945756|gb|AEA21641.1| 16S rRNA processing protein RimM [Prevotella denticola F0289]
Length = 173
Score = 91.2 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M++ +++ + IG HG++GE+ + S Y+L D + + ++
Sbjct: 1 MIRKEEVYKIGRIGKPHGVHGELQMQFSDDVFDAVDADYLLLDIDGILVPFFMEEYRFRS 60
Query: 58 KRFIA-TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKY 115
+ F +D A EL ++Y R+ ++ + + D GK
Sbjct: 61 DEVVLMKFCDVDTEAQARELTGSEVYFPRKLAEEGTADVS---WAQVVGYTLIDKATGKT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + ++LE+ ++ LIP + +++V+ ++ I + A L+
Sbjct: 118 VGRIVSIDETTINTLLEVMTPEDEERLIPASTDLIVKVDAEKQTIAMRIPAGLLD 172
>gi|303236719|ref|ZP_07323298.1| 16S rRNA processing protein RimM [Prevotella disiens FB035-09AN]
gi|302482887|gb|EFL45903.1| 16S rRNA processing protein RimM [Prevotella disiens FB035-09AN]
Length = 173
Score = 91.2 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 68/176 (38%), Gaps = 10/176 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ + + + +G HG+ GE+ + ++ D + Y++ + + + +
Sbjct: 1 MIRQEDVYKIGVLGKPHGVKGEIQFR-FTDDVFDQCDSDYLILDMEGILVPFFMEEYRFR 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR-QGK 114
+ + F ID+ A E +++Y R ++ + + + D K
Sbjct: 60 SDEVALMKFCDIDSEQRAREFTGIEVYFPRAIAEENKEDLS---WAQIIGFTLLDSKTQK 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V + ++K + LIP + + V+ ++ I +D L
Sbjct: 117 VVGEIMSVDETTINLLFDVKTQNGEEILIPANEELITNVDAEQRNIEVDIPNGLLE 172
>gi|205355554|ref|ZP_03222325.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346788|gb|EDZ33420.1| putative 16S rRNA processing protein [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 132
Score = 91.2 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 51 LKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETF 109
+K Y N + F ++I A EL +L L+ + + +L++DEFF D+ E E F
Sbjct: 4 IKHYNANNSTVL-FENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVF 62
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQENKI 160
+ K G+V + GA + EI++ + K F IP+ V +++++ +I
Sbjct: 63 EED-KRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNIDIEKRQI 119
>gi|139439744|ref|ZP_01773135.1| Hypothetical protein COLAER_02166 [Collinsella aerofaciens ATCC
25986]
gi|133774894|gb|EBA38714.1| Hypothetical protein COLAER_02166 [Collinsella aerofaciens ATCC
25986]
Length = 137
Score = 90.8 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMET 108
+ + + +F GID++ +A + + A R DF+ + L+ TDL E
Sbjct: 17 TVTSVTDTGDGDLVSFEGIDDLTAAEGITGCYVLANRDDFELDSLDAA---YTDLMGREV 73
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
D + G + + + A + ++ LIP + VL++ + I + +
Sbjct: 74 VDERFGSLGTIVEIMSTPANDVWVVEGDRYGEVLIPVIEQVVLDL-PDQGTISVHVMDGL 132
Query: 169 LN 170
++
Sbjct: 133 ID 134
>gi|330996020|ref|ZP_08319914.1| 16S rRNA processing protein RimM [Paraprevotella xylaniphila YIT
11841]
gi|329574017|gb|EGG55595.1| 16S rRNA processing protein RimM [Paraprevotella xylaniphila YIT
11841]
Length = 175
Score = 90.8 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 8/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+ D++ + + THG++GE+ ++ ++ D YV+ D + + +
Sbjct: 1 MIGEDEVYKIGMLTKTHGVSGELN-MAFTDDVFDRVEAEYVVCRMDGILVPFFMEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + F G+D A + +++Y + EE+ E E+ + D
Sbjct: 60 SDTTVLMKFEGVDTEEQARRMVGVEVYFPKA--LTEEVHEGEYTWSYFTGFTVVDMVHGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
GQV V + E+ L+P + V +++ + KI + L
Sbjct: 118 LGQVEAVDESTLNILFEVATPSGGKILLPAGEDLVDDIDHKNRKIYMTLPDGLL 171
>gi|53714986|ref|YP_100978.1| 16S rRNA-processing protein RimM [Bacteroides fragilis YCH46]
gi|60682953|ref|YP_213097.1| 16S rRNA-processing protein RimM [Bacteroides fragilis NCTC 9343]
gi|253566084|ref|ZP_04843538.1| ribosome maturation factor rimM [Bacteroides sp. 3_2_5]
gi|265766833|ref|ZP_06094662.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_16]
gi|81313990|sp|Q5L9P4|RIMM_BACFN RecName: Full=Ribosome maturation factor rimM
gi|81381438|sp|Q64PY7|RIMM_BACFR RecName: Full=Ribosome maturation factor rimM
gi|52217851|dbj|BAD50444.1| probable 16S rRNA processing protein [Bacteroides fragilis YCH46]
gi|60494387|emb|CAH09183.1| putative 16S rRNA processing protein [Bacteroides fragilis NCTC
9343]
gi|251945188|gb|EES85626.1| ribosome maturation factor rimM [Bacteroides sp. 3_2_5]
gi|263253210|gb|EEZ24686.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_16]
gi|301164419|emb|CBW23977.1| putative 16S rRNA processing protein [Bacteroides fragilis 638R]
Length = 180
Score = 90.8 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 15/186 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRK 56
M+K + + + HG++GE+ ++ ++ D Y++ D+ I + +
Sbjct: 1 MIKREDVYKIGLFNKPHGIHGELS-FTFTDDIFDRADCDYLICRLDDIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F D +
Sbjct: 60 SDSTALVKLEGVDTAERARMFTNVEVYFPVKHAEEAGPGELSWDFF-----VGFRVEDVR 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G+V V ++ + LIP + + ++ + I +D L+
Sbjct: 115 HGALGKVTDVDTSTVNTLFVVDR-DGDELLIPAQEELIAGIDQKHKIITVDLPEGLLSLD 173
Query: 173 TMKNPQ 178
+ +
Sbjct: 174 ECDDEE 179
>gi|225551813|ref|ZP_03772756.1| 16S rRNA processing protein RimM [Borrelia sp. SV1]
gi|225371608|gb|EEH01035.1| 16S rRNA processing protein RimM [Borrelia sp. SV1]
Length = 166
Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E +++ + K
Sbjct: 5 GVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNNSSVEAKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRSLIGFELWV--DDLLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|313206127|ref|YP_004045304.1| 16S rRNA processing protein rimm [Riemerella anatipestifer DSM
15868]
gi|312445443|gb|ADQ81798.1| 16S rRNA processing protein RimM [Riemerella anatipestifer DSM
15868]
gi|315022934|gb|EFT35957.1| 16S rRNA processing protein RimM [Riemerella anatipestifer RA-YM]
gi|325336428|gb|ADZ12702.1| RimM [Riemerella anatipestifer RA-GD]
Length = 174
Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 10/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I HGL+G V + + P N+ +V + I K +
Sbjct: 1 MRK-EDCYFLGKITRKHGLSGNVILKLDTDQPEFYNKLESIFVEINGLLVPFFIEKQQWQ 59
Query: 57 N-KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
I TF + + L ++ LE ++F+ ++ + FD +
Sbjct: 60 KLDSKIITFKNVSDAMVEQAL-GKSVFLPLSTLP--PLEGNQFYYHEVIGFDVFDEAENF 116
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + A I N K +IP K +L+VN E I + L
Sbjct: 117 CGSIKEINDQTAQHYF-ILNNKGKEVIIPIIKDWILKVNRDEKIISMQLPEGLLE 170
>gi|255691226|ref|ZP_05414901.1| 16S rRNA processing protein RimM [Bacteroides finegoldii DSM 17565]
gi|260623140|gb|EEX46011.1| 16S rRNA processing protein RimM [Bacteroides finegoldii DSM 17565]
Length = 184
Score = 90.0 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 72/187 (38%), Gaps = 9/187 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLVCLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D A ++++Y + EE+ + E D +
Sbjct: 60 SDSTALVKLEGVDTAERARAFTNVEVYFPVK--YAEEVGDGELSWNFFVGFRMEDTRHGL 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V ++ ++ + L+P + ++ ++ + I ++ LN +
Sbjct: 118 LGEVAEVDTATVNTLFVVE-KDGEELLVPAQEEFIVGIDQRRKLITVELPEGLLNLEDLD 176
Query: 176 NPQYDCP 182
DCP
Sbjct: 177 AEDTDCP 183
>gi|260591695|ref|ZP_05857153.1| 16S rRNA processing protein RimM [Prevotella veroralis F0319]
gi|260536338|gb|EEX18955.1| 16S rRNA processing protein RimM [Prevotella veroralis F0319]
Length = 173
Score = 89.6 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 8/175 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYI-DSYANNPIDLNRYVLYSNDN--RELRILKMYRKN 57
M+K +++ + IG HG++GE+ + S Y++ D + + ++
Sbjct: 1 MIKKEEVYKIGRIGKPHGVHGELQLQFSDDVFDAVDADYLVLEIDGILVPFFMEEYRFRS 60
Query: 58 KRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY- 115
+ F ID A EL +++ R+ D + + D Q K
Sbjct: 61 DEIALMKFCDIDTEAQARELTGCEVFFPRKLAADRTEDVS---WAQIVGYSLIDEQTKRT 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V ++ E+ + LIP + +++ + I + A L+
Sbjct: 118 IGKITAVDETTVNTLFEVVTSEGNDVLIPASNDLIVKADTIGQTITMRIPAGLLD 172
>gi|228473158|ref|ZP_04057915.1| 16S rRNA processing protein RimM [Capnocytophaga gingivalis ATCC
33624]
gi|228275740|gb|EEK14517.1| 16S rRNA processing protein RimM [Capnocytophaga gingivalis ATCC
33624]
Length = 176
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 8/174 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKN 57
++ + + TI + GEV + + ++ +V + I K
Sbjct: 1 MRREDCFFVGTIVSKFSFKGEVLVKTDTDDLSLFENMESVFVELGKELVPFFIEKCNLHK 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ F +D A L LK + +L ++F+ ++ + FD
Sbjct: 61 SDLLRIKFEEVDTERDAEVL--LKHHLFLPLTLLPKLTGNKFYYHEVIGFQVFDVNYGAI 118
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + + + EI + K LIP + EVN +E KI+++ ++
Sbjct: 119 GTITHINDNSSQPLFEIMH-EGKEILIPLHDNFLKEVNRKEKKIIVETPEGLID 171
>gi|315452725|ref|YP_004072995.1| putative 16S rRNA processing protein [Helicobacter felis ATCC
49179]
gi|315131777|emb|CBY82405.1| putative 16S rRNA processing protein,ribosome maturation factor
rimM [Helicobacter felis ATCC 49179]
Length = 177
Score = 89.2 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 9/179 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMY 54
M ++ LV++ +G GL G + + L Y + + +
Sbjct: 1 MFAIEDLVVIGHLGRAVGLLGGLKFALEGDFIETLVHGACVHLYRQGAFGQLPISLHITR 60
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQG 113
+ K+ + F + + A EL +L + +++ + L+E EF L +E +G
Sbjct: 61 FEPKKNLIFFEEVQTLEKARELTNLVVAMTQEESLRRCTLQEGEFLYFQLLGLEII-EEG 119
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GQV V L ++N +K FLIP+ + +LQ +I L +
Sbjct: 120 VSLGQVARVERLANTDYLFVQNP-QKLFLIPYIPNYIQHTDLQAKRIYTRNARGLLEES 177
>gi|71029476|ref|XP_764381.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351335|gb|EAN32098.1| hypothetical protein TP04_0745 [Theileria parva]
Length = 803
Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPI--------DLNRYVLYSNDNRELRILKMYR- 55
D V++ I +GL+G V + SY + P + + +L+
Sbjct: 477 DDYVVVGKILGVYGLHGNVKVKSYTSQPEIRLCEPGYRYLKIPFNDEKVIPINLLRGRIS 536
Query: 56 -KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---DR 111
+I F G DN+H A + + L LEE+ ++ D+ + + D
Sbjct: 537 GTKDVYIVKFEGFDNVHQAQRITNTYLTVPLSIMP--PLEENTYYARDIIGLGLYLYNDI 594
Query: 112 QGKYWGQVCGVYNF 125
G + ++
Sbjct: 595 NKTKLGNIMSFIHY 608
>gi|15639892|ref|NP_219342.1| hypothetical protein TP0907 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026130|ref|YP_001933902.1| hypothetical protein TPASS_0907 [Treponema pallidum subsp. pallidum
SS14]
gi|6685861|sp|O83877|RIMM_TREPA RecName: Full=Ribosome maturation factor rimM
gi|3323220|gb|AAC65859.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018705|gb|ACD71323.1| hypothetical protein TPASS_0907 [Treponema pallidum subsp. pallidum
SS14]
gi|291060264|gb|ADD72999.1| 16S rRNA processing protein RimM [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 174
Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 19/166 (11%)
Query: 11 ATIGTTHGLNGEVYIDSYA--------------NNPIDLNRYVLYSNDNRELR--ILKMY 54
A I +T G+ G + + S++ P + L RE + +
Sbjct: 3 ARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEHVL 62
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ + + +D + A +L R + L EF+ DL E +G
Sbjct: 63 LRAQDALLKLHRVDTVECARTFVGAELRVPRAE--ACPLSAGEFYLADLCRCELV-FEGS 119
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
G V V G S+LE++ T +PF + + +V++ KI
Sbjct: 120 AVGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDVGRKKI 165
>gi|300776362|ref|ZP_07086220.1| 16S rRNA processing protein RimM [Chryseobacterium gleum ATCC
35910]
gi|300501872|gb|EFK33012.1| 16S rRNA processing protein RimM [Chryseobacterium gleum ATCC
35910]
Length = 180
Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 16/178 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K + + I HGL G V + + P N+ +V + I K
Sbjct: 1 MRK-EDCYFLGKITRRHGLAGNVILKLDTDQPELYNKLESIFVEINGLLVPFFIEKTSWS 59
Query: 57 NKRFIATFSGIDNIHSASELR----DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ I +S+ L +Y +L +F+ ++ E FD+
Sbjct: 60 KLDAL----NIAFKNSSEALVDQVLGKSVYLPLSTLP--KLSGKQFYYHEIIGFEIFDQD 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + A + I N K +IP K +LEV+ +E I ++ ++
Sbjct: 114 DHNCGVIRSVNDQTAQ-VYFITNLDGKEVVIPMIKDWILEVDREERTIKMELPEGLID 170
>gi|156089129|ref|XP_001611971.1| 16S rRNA processing protein RimM domain containing protein [Babesia
bovis]
gi|154799225|gb|EDO08403.1| 16S rRNA processing protein RimM domain containing protein [Babesia
bovis]
Length = 527
Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPI--------DLNRYVLYSNDNRELRIL--KM 53
LD+ +++ I + HGL G V + S ++ P + + ++I ++
Sbjct: 207 LDEYIVVGKILSPHGLKGHVKVMSLSSCPDIHLCQPGYKFLKIPYRNERVMPIKIEYGRL 266
Query: 54 YRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---D 110
Y K + G+D A L L +D L+ED +++ DL +M+ + D
Sbjct: 267 YDGIKMYRLKLEGVDTRDQAIRLNGAYLSVSIRDVP--PLQEDCYYSRDLLDMDLYLFND 324
Query: 111 RQGKYWGQVCGVYN 124
G+V +
Sbjct: 325 NTKTRLGKVIDFCH 338
>gi|223889503|ref|ZP_03624089.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 64b]
gi|223885189|gb|EEF56293.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 64b]
Length = 166
Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL +N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKNNSSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|221217854|ref|ZP_03589321.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 72a]
gi|221192160|gb|EEE18380.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 72a]
Length = 166
Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNGSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|51598951|ref|YP_073139.1| 16S rRNA-processing protein RimM [Borrelia garinii PBi]
gi|59798193|sp|Q660H4|RIMM_BORGA RecName: Full=Ribosome maturation factor rimM
gi|51573522|gb|AAU07547.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 166
Score = 88.1 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + + VL +N E++++ + K+
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKNNGFTIEVKVVDVNIKSNSLYLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ S L +L+ D L+E E++ L + + G+V +
Sbjct: 65 FEGINTPESVKSLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-DNRRLGEVVSFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE+K + K F IPF + +++ +E I
Sbjct: 122 EYLNSVFLEVKVGI-KFFFIPFLSIYIGDIDAREKTI 157
>gi|77414627|ref|ZP_00790766.1| 16S rRNA processing protein RimM [Streptococcus agalactiae 515]
gi|77159314|gb|EAO70486.1| 16S rRNA processing protein RimM [Streptococcus agalactiae 515]
Length = 87
Score = 88.1 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 92 ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVL 151
+L++ EF+ ++ ++ ++ + + G++ + GA + ++ ++ L+P+ VL
Sbjct: 8 DLKDGEFYYHEIIGLDVYEGE-ELIGKIKEILQPGANDVWVVERHGKRDLLLPYIPPVVL 66
Query: 152 EVNLQENKILIDPIAAGLNNT 172
EV+L ++ ++ + +
Sbjct: 67 EVDLSNQRVQVELMEGLDDED 87
>gi|15595042|ref|NP_212831.1| 16S rRNA-processing protein RimM [Borrelia burgdorferi B31]
gi|224533375|ref|ZP_03673969.1| 16S rRNA processing protein RimM [Borrelia burgdorferi CA-11.2a]
gi|3914651|sp|O51640|RIMM_BORBU RecName: Full=Ribosome maturation factor rimM
gi|2688631|gb|AAC67046.1| conserved hypothetical protein [Borrelia burgdorferi B31]
gi|224513540|gb|EEF83897.1| 16S rRNA processing protein RimM [Borrelia burgdorferi CA-11.2a]
Length = 166
Score = 88.1 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|216264800|ref|ZP_03436792.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 156a]
gi|215981273|gb|EEC22080.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 156a]
Length = 166
Score = 87.7 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNGSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|332667871|ref|YP_004450659.1| ribosome maturation factor rimM [Haliscomenobacter hydrossis DSM
1100]
gi|332336685|gb|AEE53786.1| Ribosome maturation factor rimM [Haliscomenobacter hydrossis DSM
1100]
Length = 172
Score = 87.7 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 18/178 (10%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNRELRILKMYRKNKR 59
+DK + + + THG++G V + + + +V + I +
Sbjct: 1 MDKYIAIGRVSKTHGVDGAVKLKIKERYFDDFAEAEVLFVESAGKVVPYFIEEFR-GGLD 59
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-------FFNTDLEEMETFDRQ 112
I F +DN A L +++ + D E F + L D+
Sbjct: 60 PIVKFEDLDNRELAQALGGKEIFMRESDLLPVAEEVGAGVEQYERFVHYSLI-----DQD 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V L I + + +P + V+ + K+L+D L+
Sbjct: 115 LGDLGKIEEVIESPGQ-YLGILHYKGREVTVPLNPVFIQSVDHKGKKVLVDLPEGLLD 171
>gi|325298590|ref|YP_004258507.1| Ribosome maturation factor rimM [Bacteroides salanitronis DSM
18170]
gi|324318143|gb|ADY36034.1| Ribosome maturation factor rimM [Bacteroides salanitronis DSM
18170]
Length = 171
Score = 87.7 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 71/181 (39%), Gaps = 22/181 (12%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + I HG+ GEV ++ ++ D Y++ D + + +
Sbjct: 1 MIRKEEVFKIGVINKPHGIKGEVS-FTFTDDIFDRVDCDYLILLMDGILVPFFMEEYRFR 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE------FFNTDLEEMETF 109
+ + F GID A ++++Y F + ++E E FF
Sbjct: 60 SDTVALVKFEGIDAAEQARRFTNVEVY-----FPKKFMDEQEDVTSWNFF----IGFRVE 110
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
D Y G++ V + + I+ + L+P + ++ ++ ++ + ++ +
Sbjct: 111 DVHHGYLGEITNVDDTTLNVLFAIE-KDGEELLLPAHEEFIIGLDREKKVMKVNVPDGLI 169
Query: 170 N 170
Sbjct: 170 E 170
>gi|224540659|ref|ZP_03681198.1| hypothetical protein BACCELL_05573 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517731|gb|EEF86836.1| hypothetical protein BACCELL_05573 [Bacteroides cellulosilyticus
DSM 14838]
Length = 178
Score = 87.3 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIKREDVYKIGVFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFLEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKR---QDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y +D EL D F +
Sbjct: 60 SDSTALVKLEGVDTAERARMFTNVEVYFPAKHAEDAGPGELTWDFF-----VGFRVEEVN 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G+V V ++ + + + LIP + + ++ + I +D L
Sbjct: 115 HGDLGEVTEVDTATINTLFVV-DHQGEELLIPAQEEFIQNIDQKHKVITMDLPEGLLALD 173
Query: 173 TMKN 176
+
Sbjct: 174 ETEE 177
>gi|210633028|ref|ZP_03297628.1| hypothetical protein COLSTE_01536 [Collinsella stercoris DSM 13279]
gi|210159315|gb|EEA90286.1| hypothetical protein COLSTE_01536 [Collinsella stercoris DSM 13279]
Length = 171
Score = 87.3 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 10/167 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRY------VLYSNDNRELRILKMYRKNKRFIAT 63
+A + HG GEV + P+ L+R R + + +
Sbjct: 8 IARVVRPHGTKGEVLVAPLRGLPLLLSRGMKVHLTPPALKRERVSTVEAVSPVPEGARVR 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
FS N+ A L + A DF+ L+ +L D + G + V
Sbjct: 68 FSCSRNLDEAESLARCYVLANCDDFELGALDAA---FDELIGRSVVDERHGEIGVIGEVM 124
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A + + + LIP V + E I + + LN
Sbjct: 125 ETPANDVWVVGSGAYGEVLIPVIADVVEAI-PSEGPIPVRLMDGLLN 170
>gi|189468520|ref|ZP_03017305.1| hypothetical protein BACINT_04923 [Bacteroides intestinalis DSM
17393]
gi|189436784|gb|EDV05769.1| hypothetical protein BACINT_04923 [Bacteroides intestinalis DSM
17393]
Length = 178
Score = 87.3 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K + + + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIKREDVYKIGVFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFLEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKR---QDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y +D EL D F +
Sbjct: 60 SDSTALVKLEGVDTAERARMFTNVEVYFPAKHAEDAGPGELTWDFF-----VGFRVEEVN 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G+V V ++ + + + LIP + +L ++ + I +D L
Sbjct: 115 YGDLGEVTEVDTATINTLFVV-DHQGEELLIPAQEEFILNIDQKHKVITMDLPKGLLALD 173
Query: 173 TMKN 176
+
Sbjct: 174 ETEE 177
>gi|312148287|gb|ADQ30946.1| 16S rRNA processing protein RimM [Borrelia burgdorferi JD1]
Length = 166
Score = 87.3 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYAKVKSISNNFCDFINLKNNKVLLKKSNVSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINTQEKTI 157
>gi|195941516|ref|ZP_03086898.1| hypothetical protein Bbur8_01361 [Borrelia burgdorferi 80a]
gi|218249955|ref|YP_002375197.1| 16S rRNA processing protein RimM [Borrelia burgdorferi ZS7]
gi|224532408|ref|ZP_03673038.1| 16S rRNA processing protein RimM [Borrelia burgdorferi WI91-23]
gi|225548897|ref|ZP_03769874.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 94a]
gi|225550051|ref|ZP_03771012.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 118a]
gi|226320465|ref|ZP_03796031.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 29805]
gi|226321395|ref|ZP_03796922.1| 16S rRNA processing protein RimM [Borrelia burgdorferi Bol26]
gi|218165143|gb|ACK75204.1| 16S rRNA processing protein RimM [Borrelia burgdorferi ZS7]
gi|224512715|gb|EEF83086.1| 16S rRNA processing protein RimM [Borrelia burgdorferi WI91-23]
gi|225369510|gb|EEG98962.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 118a]
gi|225370500|gb|EEG99936.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 94a]
gi|226233191|gb|EEH31943.1| 16S rRNA processing protein RimM [Borrelia burgdorferi Bol26]
gi|226234107|gb|EEH32822.1| 16S rRNA processing protein RimM [Borrelia burgdorferi 29805]
gi|312149398|gb|ADQ29469.1| 16S rRNA processing protein RimM [Borrelia burgdorferi N40]
Length = 166
Score = 87.3 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + N VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKNNKVLLKKSNSSSVEVKVVDVNIKGNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F ID + L +L+ D L+E E++ L + K G+V +
Sbjct: 65 FEEIDTPEAVRPLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-NNKKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE++ + K F IPF + ++N QE I
Sbjct: 122 EYLNSVFLEVRVGI-KFFFIPFLSIYIGDINAQEKTI 157
>gi|34556969|ref|NP_906784.1| putative 16S rRNA processing protein [Wolinella succinogenes DSM
1740]
gi|34482684|emb|CAE09684.1| PUTATIVE 16S RRNA PROCESSING PROTEIN [Wolinella succinogenes]
Length = 130
Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
A F I++ A+ L + LY + ++ LEE E F ++ E +G+ G+V
Sbjct: 13 ARFDEINSREEAALLTNHLLYTTMEKTLQECTLEEGEHFWFEIVGCEVM-EEGERLGKVE 71
Query: 121 GVYNFGAGSILEIKNT-------MEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+ GA L I+ K FL+P+ VL +++ + L
Sbjct: 72 GIERLGAVDYLIIQTDPLLQKALGIKRFLVPYIDRFVLLADVKNRLVECSGAKGILE 128
>gi|160883464|ref|ZP_02064467.1| hypothetical protein BACOVA_01433 [Bacteroides ovatus ATCC 8483]
gi|260173939|ref|ZP_05760351.1| 16S rRNA-processing protein RimM [Bacteroides sp. D2]
gi|293369870|ref|ZP_06616443.1| 16S rRNA processing protein RimM [Bacteroides ovatus SD CMC 3f]
gi|299148091|ref|ZP_07041154.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_23]
gi|315922207|ref|ZP_07918447.1| ribosome maturation factor rimM [Bacteroides sp. D2]
gi|156111184|gb|EDO12929.1| hypothetical protein BACOVA_01433 [Bacteroides ovatus ATCC 8483]
gi|292635047|gb|EFF53566.1| 16S rRNA processing protein RimM [Bacteroides ovatus SD CMC 3f]
gi|298514274|gb|EFI38160.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_23]
gi|313696082|gb|EFS32917.1| ribosome maturation factor rimM [Bacteroides sp. D2]
Length = 180
Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 68/167 (40%), Gaps = 8/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D+ A ++++Y + EE E+ E + D
Sbjct: 60 SDSTALVKLEGVDSAERARMFTNIEVYFPVKH--AEEAEDGELSWNFFIGFQMEDIHHGL 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V ++ ++ E+ L+P + ++ ++ ++ I +
Sbjct: 118 LGEVIDVDTTTVNTLFVVEGAEEEELLVPAQEEFIVGIDQKQKLITV 164
>gi|111115529|ref|YP_710147.1| hypothetical protein BAPKO_0741 [Borrelia afzelii PKo]
gi|216263682|ref|ZP_03435677.1| 16S rRNA processing protein RimM [Borrelia afzelii ACA-1]
gi|122956329|sp|Q0SMF7|RIMM_BORAP RecName: Full=Ribosome maturation factor rimM
gi|110890803|gb|ABH01971.1| hypothetical protein BAPKO_0741 [Borrelia afzelii PKo]
gi|215980526|gb|EEC21347.1| 16S rRNA processing protein RimM [Borrelia afzelii ACA-1]
Length = 166
Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG I S + + N VL N E++++ + K+
Sbjct: 5 GVILSSYGVNGYARIKSISNNFCDFINLKNNKVLLKKSNGFAIEVKVIDVNIKSNSLFLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GID S L +L+ D L+E E++ L + + G+V +
Sbjct: 65 FEGIDAPESVKPLIGFELWV--DDSLASSLKEGEYYLGKLIGYTIVN-DNRKLGEVVAFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE+K + K F IPF + ++ +E I
Sbjct: 122 EYLNNVFLEVKVGI-KFFFIPFLSIYIGNIDAREKTI 157
>gi|237720241|ref|ZP_04550722.1| RimM protein [Bacteroides sp. 2_2_4]
gi|229450793|gb|EEO56584.1| RimM protein [Bacteroides sp. 2_2_4]
Length = 180
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 68/167 (40%), Gaps = 8/167 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYV--LYSNDNRELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y+ L + I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLNGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D+ A ++++Y + EE E+ E + D
Sbjct: 60 SDSTALVKLEGVDSAERARMFTNIEVYFPVKH--AEEAEDGELSWNFFIGFQMEDIHHGL 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V ++ ++ E+ L+P + ++ ++ ++ I +
Sbjct: 118 LGEVIDVDTTTVNTLFVVEGAEEEELLVPAQEEFIVGIDQKQKLITV 164
>gi|219684297|ref|ZP_03539241.1| 16S rRNA processing protein RimM [Borrelia garinii PBr]
gi|219672286|gb|EED29339.1| 16S rRNA processing protein RimM [Borrelia garinii PBr]
Length = 166
Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + + VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKSNGFTIEVKVIDVNIKGNSLYLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ S L +L+ D L+E E++ L + + G+V +
Sbjct: 65 FEGINTPESVKSLIGFELWV--DDSLASSLKEGEYYLGKLIGYTIVN-DNRRLGEVVSFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE+K + K F IPF + +++ +E I
Sbjct: 122 EYLNRVFLEVKVGI-KFFFIPFLSIYIGDIDAREKTI 157
>gi|325105554|ref|YP_004275208.1| 16S rRNA processing protein RimM [Pedobacter saltans DSM 12145]
gi|324974402|gb|ADY53386.1| 16S rRNA processing protein RimM [Pedobacter saltans DSM 12145]
Length = 174
Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR---YVLYSNDNRELRILKMY-RKN 57
+K ++ V + I THGL G+V + + P L ++ + +
Sbjct: 1 MKSEEFVEIGYITKTHGLKGDVQVAFSYHEPEKLKMNAVFLEIGGKMVPYFVSSFKLSQQ 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F ID+I A L +++ +++ ++ EE DL+ D Q G
Sbjct: 61 TTGYFLFEDIDHIDKAKALVKKRIFLQQKTMPKKKKEEFT--FKDLQGFVVVDLQHGELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
Q+ V + + + N EK L P ++ + ++++ + I+ L+
Sbjct: 119 QIESVREYPQQFLATV-NYQEKEVLFPLSEDFIEDIDIANRILKIELPEGLLD 170
>gi|329957838|ref|ZP_08298313.1| 16S rRNA processing protein RimM [Bacteroides clarus YIT 12056]
gi|328522715|gb|EGF49824.1| 16S rRNA processing protein RimM [Bacteroides clarus YIT 12056]
Length = 178
Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 70/184 (38%), Gaps = 17/184 (9%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIRKEEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F +
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEEAGPGELSWDFF-----VGFRMEETH 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG--LN 170
G+V V ++ + + + LIP + +++++ + I +D L+
Sbjct: 115 HGKLGEVTDVDTSTINTLFVV-DYKGEELLIPAQEDFIMDIDQKHKVITVDLPEGLLALD 173
Query: 171 NTTM 174
+T
Sbjct: 174 DTEE 177
>gi|288929167|ref|ZP_06423012.1| 16S rRNA processing protein RimM [Prevotella sp. oral taxon 317
str. F0108]
gi|288329269|gb|EFC67855.1| 16S rRNA processing protein RimM [Prevotella sp. oral taxon 317
str. F0108]
Length = 183
Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRKN-KR 59
D + +G HG+ GE+ + ++ D ++ + + K K
Sbjct: 14 DNFYKIGKLGKPHGVKGEISFH-FDDDIFDRIEADFLALEVEGLLVPFFFEEYRFKGSKT 72
Query: 60 FIATFSGIDNIHSASELRDLKLYAKR--QDFKDEELEEDEFFNTDLEEMETFDRQ-GKYW 116
+ F ID A EL ++ R D D EL + D K
Sbjct: 73 ALVKFVNIDTQERAKELTGCNVFFPRQEADNPDAELS-----WAAIVGFTVKDAATNKRL 127
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + ++ E+ L+P + + V+ ++ +I + L+
Sbjct: 128 GTLLAVDDSTVNTLFEVDVNGSAPLLLPASYDLIAGVDAKKREITMHIPDGILD 181
>gi|189502006|ref|YP_001957723.1| hypothetical protein Aasi_0593 [Candidatus Amoebophilus asiaticus
5a2]
gi|209573541|sp|B3ERZ2|RIMM_AMOA5 RecName: Full=Ribosome maturation factor rimM
gi|189497447|gb|ACE05994.1| hypothetical protein Aasi_0593 [Candidatus Amoebophilus asiaticus
5a2]
Length = 173
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEV--YIDSYANNPIDLNRYVLYSNDN-RELRILKMYRKN 57
M K V + I GL G V I+ + +N + ++ ++ +
Sbjct: 1 MNK--NCVEVGKITQARGLKGCVVARIEPILESFDPINYIFIKIGHTLVPYQVEEITGQA 58
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
++ F I + S EL ++ ++ ++E+ + D+ + D+ G
Sbjct: 59 QQVFIKFQHISDRDSVRELIGSSIWLSQEILDKLVVQEEPY--IDIIGYQVTDKYQGELG 116
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ + F L + + ++K LIP+ + +++ ++ KI+++ L
Sbjct: 117 IIKDIEQFPLHVCLVV-DYLDKELLIPYEPALIQDLDHEQKKIIVELPMGFLE 168
>gi|255529952|ref|YP_003090324.1| 16S rRNA processing protein RimM [Pedobacter heparinus DSM 2366]
gi|255342936|gb|ACU02262.1| 16S rRNA processing protein RimM [Pedobacter heparinus DSM 2366]
Length = 175
Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN---RYVLYSNDNRELRILKMYRKNK 58
+ ++ + I T GL GEV + + P L+ + + + +N
Sbjct: 1 MTQEETFYIGYITKTKGLKGEVQLFFEYDEPGLLDLDVVFAAINGKMVPFFVSSYKLQNN 60
Query: 59 RFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F ID+I A L K+Y D E+ F DL+ D G
Sbjct: 61 NTGNFYFDDIDHIDKAQPLVKKKIYLPLTKMPDRSDED--FHYNDLKGFMVSDENKGELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ V + + + + P + ++E++ +E +L+D L+
Sbjct: 119 EIIEVNEYPQQFVATV-LYKGTEIMFPLNEDMIVEIDEEEETLLVDLPEGLLD 170
>gi|189463000|ref|ZP_03011785.1| hypothetical protein BACCOP_03702 [Bacteroides coprocola DSM 17136]
gi|189430282|gb|EDU99266.1| hypothetical protein BACCOP_03702 [Bacteroides coprocola DSM 17136]
Length = 170
Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 70/180 (38%), Gaps = 20/180 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + I HG+ GEV ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGVINKPHGIKGEVS-FTFNDDIFDRVECDYLVLLLDGILVPFFIEEYRFR 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDE-----FFNTDLEEMETFD 110
+ + F GI+ A L ++++Y + E+DE FF + D
Sbjct: 60 SDDVALVKFEGIETAERARMLTNVEVYFPK----KYMDEQDEITSWNFF----TGFQVED 111
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V V + + I+ L+P + +++++ + + +D L
Sbjct: 112 IHHGCLGEVVAVDDSTMNVLFVIE-KDGDELLLPAHEEFIIDLDRENRVLKVDIPDGLLE 170
>gi|167764699|ref|ZP_02436820.1| hypothetical protein BACSTE_03089 [Bacteroides stercoris ATCC
43183]
gi|167697368|gb|EDS13947.1| hypothetical protein BACSTE_03089 [Bacteroides stercoris ATCC
43183]
Length = 178
Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 69/181 (38%), Gaps = 11/181 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIRKEEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D A ++++Y + + E E + +
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEGAEPGELSWDFF--VGFRMEEVHHGQ 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG--LNNTT 173
G+V V ++ + + + LIP + +++++ + I +D L++T
Sbjct: 118 LGEVTDVDTSTINTLFVV-DYKGEELLIPAQEDFIMDIDQKHKVITVDLPEGLLALDDTE 176
Query: 174 M 174
Sbjct: 177 E 177
>gi|322379256|ref|ZP_08053642.1| 16S rRNA processing protein [Helicobacter suis HS1]
gi|322379867|ref|ZP_08054154.1| 16S rRNA processing protein [Helicobacter suis HS5]
gi|321147702|gb|EFX42315.1| 16S rRNA processing protein [Helicobacter suis HS5]
gi|321148293|gb|EFX42807.1| 16S rRNA processing protein [Helicobacter suis HS1]
Length = 172
Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 38 YVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYA-KRQDFKDEELEED 96
Y + R L I + K + F G++ A L L +++ K L E
Sbjct: 41 YAYHIGSPRSLSIKQYIAKPS--LIFFEGLETPELAKTLTGYTLAMSEKETLKYCHLAEG 98
Query: 97 EFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
EF + L +E + +G G+V V + + + L ++++ K+FLIP+ +L V+L
Sbjct: 99 EFLYSQLIGLE-IEEEGTILGRVVSVDDLASMAYLRVQSSN-KSFLIPYIARYILRVDLS 156
Query: 157 ENKILIDPIAAGLNNT 172
+I L +
Sbjct: 157 TQRIYTQDSKGLLEES 172
>gi|225012266|ref|ZP_03702703.1| 16S rRNA processing protein RimM [Flavobacteria bacterium MS024-2A]
gi|225003821|gb|EEG41794.1| 16S rRNA processing protein RimM [Flavobacteria bacterium MS024-2A]
Length = 171
Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 9/166 (5%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI-ATF 64
+ T+ + GEV + +++P + +V + I K + F
Sbjct: 9 LGTVVGKYSFKGEVLVKIDSDSPQEYLTLESIFVELTTGLVPFFIRKCQLHKSSLLRIDF 68
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ + +A L +LY E + F+ ++ + + K G++ +++
Sbjct: 69 EEVTDEAAADALLKKELYLPLTLLPPLEGNK--FYYHEVIGFDIVEND-KNLGKIKVIHD 125
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GA ++ EI T LIP +L V+ I ++ L+
Sbjct: 126 QGAQALFEIDRVD-TTALIPIHDDFILTVDRITKTITVNLPEGLLD 170
>gi|219685555|ref|ZP_03540372.1| 16S rRNA processing protein RimM [Borrelia garinii Far04]
gi|219672954|gb|EED29976.1| 16S rRNA processing protein RimM [Borrelia garinii Far04]
Length = 166
Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG + S + + + VL N E++++ + K
Sbjct: 5 GVILSSYGVNGYARVKSISNNFCDFINLKDNKVLLKKSNGFAIEVKVVDVNIKGNSLYLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F GI+ S L +L+ D L+E E++ L + G+V +
Sbjct: 65 FEGINTPESVKSLIGFELWV--DDSLASSLKEGEYYLGKLIGYAIVN-DNIRLGEVVSFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+ LE+K + K F IPF + +++ +E I
Sbjct: 122 EYLNRVFLEVKVGI-KFFFIPFLSIYIGDIDAREKTI 157
>gi|150004208|ref|YP_001298952.1| 16S rRNA-processing protein RimM [Bacteroides vulgatus ATCC 8482]
gi|212690789|ref|ZP_03298917.1| hypothetical protein BACDOR_00276 [Bacteroides dorei DSM 17855]
gi|237708174|ref|ZP_04538655.1| RimM protein [Bacteroides sp. 9_1_42FAA]
gi|265756829|ref|ZP_06090817.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_33FAA]
gi|209573542|sp|A6L0W6|RIMM_BACV8 RecName: Full=Ribosome maturation factor rimM
gi|149932632|gb|ABR39330.1| RimM protein, required for 16S rRNA processing [Bacteroides
vulgatus ATCC 8482]
gi|212666666|gb|EEB27238.1| hypothetical protein BACDOR_00276 [Bacteroides dorei DSM 17855]
gi|229457727|gb|EEO63448.1| RimM protein [Bacteroides sp. 9_1_42FAA]
gi|263233615|gb|EEZ19235.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_33FAA]
Length = 172
Score = 85.4 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 70/178 (39%), Gaps = 15/178 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K D++ + HG+ GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKDEVFKIGIFNKPHGVKGEIS-FTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEED----EFFNTDLEEMETFDR 111
+ + G+D A ++++Y ++ +EE +D +F + D
Sbjct: 60 SDTTALVKLEGVDTSEKARMFTNVEVYFPKKYVGEEEDSDDIPTWNYF----IGFKVEDV 115
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V + + I+ + L+P + + +++ ++ + ++ +
Sbjct: 116 NHGELGEIVAVDDSTMNVLFAIE-KGGEELLLPAHEEFITKLDKKKRLLTVEVPDGLI 172
>gi|257466337|ref|ZP_05630648.1| 16S rRNA processing protein rimM [Fusobacterium gonidiaformans ATCC
25563]
gi|315917494|ref|ZP_07913734.1| ribosome maturation factor rimM [Fusobacterium gonidiaformans ATCC
25563]
gi|313691369|gb|EFS28204.1| ribosome maturation factor rimM [Fusobacterium gonidiaformans ATCC
25563]
Length = 172
Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYV-------LYSNDNRELRILKM-YRKN 57
KL+ I TH L G V + S + +L + + L + +N L K+ +
Sbjct: 2 KLLTAGRILGTHHLLGAVKVVS---SLEELPKLLGSKCMTKLETGENILLTPTKIEHLVG 58
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYW 116
++ F I N A +LR+ + +R E ED F +D + + + +
Sbjct: 59 DSWVFQFEEIKNKAEALKLRNALIEVRRDLLGYTE--EDIF-LSDYIGLLAKEVETKEEI 115
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G+V ++ A IL I++ +T ++P T V EVN + +I I+ +
Sbjct: 116 GRVEEIFETAAHPILVIQSEHYET-MVPDTPTFVKEVNFETGEIYIELLEGM 166
>gi|254884774|ref|ZP_05257484.1| RimM protein [Bacteroides sp. 4_3_47FAA]
gi|294775239|ref|ZP_06740763.1| 16S rRNA processing protein RimM [Bacteroides vulgatus PC510]
gi|319644163|ref|ZP_07998688.1| RimM protein [Bacteroides sp. 3_1_40A]
gi|254837567|gb|EET17876.1| RimM protein [Bacteroides sp. 4_3_47FAA]
gi|294450944|gb|EFG19420.1| 16S rRNA processing protein RimM [Bacteroides vulgatus PC510]
gi|317384285|gb|EFV65256.1| RimM protein [Bacteroides sp. 3_1_40A]
Length = 172
Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 71/178 (39%), Gaps = 15/178 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K D++ + HG+ GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKDEVFKIGIFNKPHGVKGEIS-FTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEED----EFFNTDLEEMETFDR 111
+ + G+D A ++++Y ++ +EE +D +F + D
Sbjct: 60 SDTTALVKLEGVDTSEKARMFTNVEVYFPKKYVGEEEDSDDIPTWNYF----IGFKVEDV 115
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V + + I+ + L+P + +++++ ++ + ++ +
Sbjct: 116 NHGELGEIVAVDDSTMNVLFAIE-KDGEELLLPAHEEFIIKLDKKKRLLTVEVPDGLI 172
>gi|194246827|ref|YP_002004466.1| 16S rRNA-processing protein rimM [Candidatus Phytoplasma mali]
gi|193807184|emb|CAP18625.1| 16S rRNA-processing protein rimM [Candidatus Phytoplasma mali]
Length = 158
Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDN 69
+ I THG+ G + + + +N + ++ + + F+ ++N
Sbjct: 4 LGKIINTHGIKGYLKAQLEIDFLSFFKPQQKFYINNFLVELVSLQKYKDFFLLKLKDLNN 63
Query: 70 IHSASELRDLKLYAKRQDFKDEELEEDEFF-NTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
++ + + +Y + F + F+ +L + +D + + G+V + G
Sbjct: 64 LNQVEKFKFCDIYIDNEYFSAV----NNFYSYQELIDKSVYDEKKVFLGKVKFIIKVPQG 119
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+LEIK T L+PF + V E+N+ I+I I +
Sbjct: 120 YLLEIKKKCGNTSLVPFLNYFVKEINIDN--IIIKTIEGLI 158
>gi|160889160|ref|ZP_02070163.1| hypothetical protein BACUNI_01581 [Bacteroides uniformis ATCC 8492]
gi|270296039|ref|ZP_06202239.1| 16S rRNA processing protein RimM [Bacteroides sp. D20]
gi|156861167|gb|EDO54598.1| hypothetical protein BACUNI_01581 [Bacteroides uniformis ATCC 8492]
gi|270273443|gb|EFA19305.1| 16S rRNA processing protein RimM [Bacteroides sp. D20]
Length = 178
Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 69/184 (37%), Gaps = 17/184 (9%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIKREEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGILVPFFLEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F +
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEEAGPGELSWDFF-----VGFRMEEVH 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG--LN 170
G+V V ++ + + + L+P + +++++ + I +D L+
Sbjct: 115 HGTLGEVTDVDTSTINTLFVV-DYQGEELLVPAQEEFIIDIDQKHKVITVDLPEGLIALD 173
Query: 171 NTTM 174
T
Sbjct: 174 ETEE 177
>gi|150007134|ref|YP_001301877.1| 16S rRNA-processing protein RimM [Parabacteroides distasonis ATCC
8503]
gi|255015252|ref|ZP_05287378.1| 16S rRNA-processing protein RimM [Bacteroides sp. 2_1_7]
gi|256840510|ref|ZP_05546018.1| 16S rRNA processing protein RimM [Parabacteroides sp. D13]
gi|298377560|ref|ZP_06987512.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_19]
gi|209573585|sp|A6L991|RIMM_PARD8 RecName: Full=Ribosome maturation factor rimM
gi|149935558|gb|ABR42255.1| putative 16S rRNA processing protein [Parabacteroides distasonis
ATCC 8503]
gi|256737782|gb|EEU51108.1| 16S rRNA processing protein RimM [Parabacteroides sp. D13]
gi|298265579|gb|EFI07240.1| 16S rRNA processing protein RimM [Bacteroides sp. 3_1_19]
Length = 173
Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 64/174 (36%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDN--RELRILKMYRKN 57
M++ +++ + HG+ GE+ + + ++ D Y++ D + K
Sbjct: 1 MIREEEVFKIGQFAKPHGIKGELSLVTNSDVLEDAEDPYIVCEMDGILVPFFVEDFRYKT 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +++ A +++ +E+L D +++ D Q Y
Sbjct: 61 DTVVLVKLEDVNSEEDARMFVGKEVFYPLDAVDEEDLVGDMTWDS-FIGYTVTDVQKGYL 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V +L + + + LIP + + E + + + + ++
Sbjct: 120 GEITDVDETTINVLLRVDHK-GEELLIPAVEELITEADHEARSLTVSLPEGLID 172
>gi|218754660|ref|ZP_03533456.1| 16S rRNA-processing protein [Mycobacterium tuberculosis GM 1503]
gi|289763083|ref|ZP_06522461.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis GM
1503]
gi|289710589|gb|EFD74605.1| 16S rRNA processing protein rimM [Mycobacterium tuberculosis GM
1503]
Length = 119
Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL-----------RILKMYRK 56
+++ + +HG+ GEV ++ ++P D I + +
Sbjct: 3 LVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQH 62
Query: 57 NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFF 99
R + +G+ + +A LR D + E D ++
Sbjct: 63 GGRLLVRLAGVADRDAADALRGSLFVIDADDLPPID-EPDTYY 104
>gi|119953474|ref|YP_945683.1| 16S rRNA-processing protein RimM [Borrelia turicatae 91E135]
gi|119862245|gb|AAX18013.1| 16S rRNA processing protein RimM [Borrelia turicatae 91E135]
Length = 166
Score = 84.6 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDSYA---NNPIDLNRYVLYSNDN----RELRILKMYRKNKRFIAT 63
I +++G+NG + S + ++ DL L E+++ + N +
Sbjct: 5 GIILSSYGINGYAKVKSISNGFDDFFDLKGNKLVLKKKCCSSIEVKVEDVSLMNHSLLLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + +L +L+ D +LEE E++ +L + + GK G V +
Sbjct: 65 FEEFNTPELIKDLIGFELWV--NDEFASKLEEGEYYFGELIGYKLVN-NGKELGVVVSFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
A +LE+K K F +PF + +++ + I
Sbjct: 122 ECVASILLEVK-VGSKLFFVPFLNIYLGDIDRELKTI 157
>gi|329961627|ref|ZP_08299686.1| 16S rRNA processing protein RimM [Bacteroides fluxus YIT 12057]
gi|328531619|gb|EGF58453.1| 16S rRNA processing protein RimM [Bacteroides fluxus YIT 12057]
Length = 178
Score = 84.6 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 70/181 (38%), Gaps = 11/181 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIRREEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICMLDGILVPFFMEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + ++ E +E + +
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNVEVYFPVKHAEEAEPDELSWDFF--VGFRMEETHHGK 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG--LNNTT 173
G++ V ++ + + + L+P + +++++ + I +D L+ T
Sbjct: 118 LGEITDVDTSTINTLFVV-DHQGEELLVPAQEEFIVDIDRKHKVITVDLPEGLIVLDETE 176
Query: 174 M 174
Sbjct: 177 E 177
>gi|257463690|ref|ZP_05628080.1| 16S rRNA processing protein rimM [Fusobacterium sp. D12]
gi|317061237|ref|ZP_07925722.1| ribosome maturation factor rimM [Fusobacterium sp. D12]
gi|313686913|gb|EFS23748.1| ribosome maturation factor rimM [Fusobacterium sp. D12]
Length = 172
Score = 84.2 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS-YANNPIDLNRYVLYSNDNRELRILKMYRK----NKRF 60
KL+ I H L G V + S P L + + E +L + + +
Sbjct: 2 KLLTAGRILGIHHLLGAVKVKSALEELPKLLGNKCMIRLETGETILLTPKKIEYLLGESW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ-GKYWGQV 119
+ F I N AS+LR+ L +R E ED F +D + + G+ G+V
Sbjct: 62 VFQFEEIKNKAEASKLRNAFLEVRRDLLGYTE--EDIF-LSDYIGLLAKEADSGEEIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ A IL I++ +T ++P T V V+ ++ +I ++ +
Sbjct: 119 EEIFETAAHPILVIQSEDYET-MVPDTPVFVKRVDFEKGEIYLELLEGM 166
>gi|218263035|ref|ZP_03477280.1| hypothetical protein PRABACTJOHN_02961 [Parabacteroides johnsonii
DSM 18315]
gi|218222968|gb|EEC95618.1| hypothetical protein PRABACTJOHN_02961 [Parabacteroides johnsonii
DSM 18315]
Length = 173
Score = 84.2 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 68/174 (39%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDN--RELRILKMYRKN 57
M+K + + + HG+ GE+ + + ++ D + Y++ D I + K
Sbjct: 1 MIKKEDVFKIGQFAKPHGIKGEIALVTNSDVFEDSDDPYIICEMDGILVPFFIEEYRYKT 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
I +++ +A E + +++ + +++L D +++ D
Sbjct: 61 DTVILLKLKNVNDEKAAREFSNREVFYSLDEVDEDDLVGDMTWDS-FIGYRVIDEHHGEI 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V +L+I + + L+P + +L + + + + L+
Sbjct: 120 GEITDVDESTINVLLQIDHN-GEELLLPAAEELILSADHENKTLTVSIPEGLLD 172
>gi|257452470|ref|ZP_05617769.1| 16S rRNA processing protein rimM [Fusobacterium sp. 3_1_5R]
gi|317059011|ref|ZP_07923496.1| ribosome maturation factor rimM [Fusobacterium sp. 3_1_5R]
gi|313684687|gb|EFS21522.1| ribosome maturation factor rimM [Fusobacterium sp. 3_1_5R]
Length = 172
Score = 84.2 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 6 KLVLMATIGTTHGLNGEVYIDS-YANNPIDLNR---YVLYSNDNRELRILKM-YRKNKRF 60
KL+ I TH L G V + S P L L + +N L K+ + +
Sbjct: 2 KLLTAGRILGTHHLLGAVKVVSGLEELPKLLGSKCMTKLETGENILLTPTKIEHLVGDSW 61
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQG-KYWGQV 119
+ F I N A +LR+ + +R E ED F +D + + + + G+V
Sbjct: 62 VFQFEEIKNKAEALKLRNALIEVRRDLLGYTE--EDIF-LSDYIGLLAKEVESKEEIGRV 118
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
++ A IL I++ +T ++P T V EVN + +I I+ +
Sbjct: 119 EEIFETAAHPILVIQSEHYET-MVPDTPTFVKEVNFETGEIYIELLEGM 166
>gi|218462267|ref|ZP_03502358.1| 16S rRNA-processing protein [Rhizobium etli Kim 5]
Length = 89
Score = 84.2 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 47/66 (71%)
Query: 110 DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
D QG +G V GV++FGAG +LE+K ++ LIPF++ +VLE++L+ +LIDP+AAGL
Sbjct: 11 DDQGVSYGTVTGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGL 70
Query: 170 NNTTMK 175
+ +
Sbjct: 71 IDDPEE 76
>gi|221194739|ref|ZP_03567796.1| PRC-barrel domain protein [Atopobium rimae ATCC 49626]
gi|221185643|gb|EEE18033.1| PRC-barrel domain protein [Atopobium rimae ATCC 49626]
Length = 177
Score = 84.2 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMY---RKNKRF 60
+A + THG GEV I N P + R R L + K+ R
Sbjct: 8 VAYVVKTHGKQGEVVITPIHNLPSVIARDMTVIPVPPALTGPRSLEVTKVVSDTRHGS-- 65
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTD---LEEMETFDRQGKYWG 117
+ +F+ ID++ A L L ++ D + F D L E D G
Sbjct: 66 LVSFADIDSLGDAKNLVGKTLLVRQADLPQD------FALHDVNSLLGREVIDAHFGLLG 119
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAA 167
+ V A + +K T +K LIP + EV + ++ A
Sbjct: 120 TLSEVLFTPAHDVWVVKGT-KKDILIPVVGAYIREV-PSAGALYVEVPAG 167
>gi|332827878|gb|EGK00600.1| 16S rRNA processing protein RimM [Dysgonomonas gadei ATCC BAA-286]
Length = 172
Score = 83.9 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG+ GE+ S+ N+ D Y++ DN I + K
Sbjct: 1 MIKENEVFKIGKFIKPHGIKGEMN-FSFENDVFDRVDCPYLICRIDNILVPFFIEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
K + F IDN A + L++Y R+ +++E ++ E+ D+
Sbjct: 60 GKETALIKFEDIDNEEKARRMSGLEVYFPRKYYEEESNDDIEYSWNFFIGFSVIDKTAGK 119
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + + ++ IK+ E +IP T+ + +V+ ++ + + +
Sbjct: 120 LGIIEDIDDKTINTLFLIKD-GEDELIIPATEDFIEKVDARKKMLYLALPEGLI 172
>gi|317480659|ref|ZP_07939746.1| 16S rRNA processing protein RimM [Bacteroides sp. 4_1_36]
gi|316903166|gb|EFV25033.1| 16S rRNA processing protein RimM [Bacteroides sp. 4_1_36]
Length = 178
Score = 83.9 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 68/184 (36%), Gaps = 15/184 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIKREEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGILVPFFLEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F +
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEEAGPGELSWDFF-----VGFRMEEVH 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G+V V ++ + + + L+P + +++++ + I +D +
Sbjct: 115 HGTLGEVTDVDTSTINTLFVV-DYQGEELLVPAQEEFIIDIDQKHKVITVDLPEGLIALD 173
Query: 173 TMKN 176
+
Sbjct: 174 KTEE 177
>gi|262381131|ref|ZP_06074269.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_33B]
gi|262296308|gb|EEY84238.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_33B]
Length = 177
Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 63/174 (36%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDN--RELRILKMYRKN 57
M++ +++ + HG+ GE+ + + ++ D Y++ D + K
Sbjct: 1 MIREEEVFKIGQFTKPHGIKGELSLVTNSDVLEDAEDPYIVCEMDGILVPFFVEDFRYKT 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +++ A +++ +E+L D +++ D Q Y
Sbjct: 61 DTVVLVKLEDVNSEEDARMFVGKEVFYPLDAVDEEDLVGDMTWDS-FIGYTVTDVQTGYL 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V +L + + + LIP + + E + + + + +
Sbjct: 120 GEITDVDETTINVLLRVDHK-GEELLIPAVEELITEADHEARSLTVSLPEGLIE 172
>gi|325661106|ref|ZP_08149733.1| hypothetical protein HMPREF0490_00466 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472613|gb|EGC75824.1| hypothetical protein HMPREF0490_00466 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 67
Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ M F G +G + V GA + I T K L+P K +L V+++E K+ I
Sbjct: 1 MIGMHVFTEDGTEFGTLRDVLETGANDVYIIDTTDGKEVLVPAIKQCILNVDIEEQKMTI 60
Query: 163 DPIAAG 168
+
Sbjct: 61 HLLEGL 66
>gi|237723706|ref|ZP_04554187.1| ribosome maturation factor rimM [Bacteroides sp. D4]
gi|229437917|gb|EEO47994.1| ribosome maturation factor rimM [Bacteroides dorei 5_1_36/D4]
Length = 172
Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 70/178 (39%), Gaps = 15/178 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG+ GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKNEVFKIGIFNKPHGVKGEIS-FTFTDDIFDRVECEYLVCLLDGIFVPFFIEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEED----EFFNTDLEEMETFDR 111
+ + G+D A ++++Y ++ +EE +D +F + D
Sbjct: 60 SDTTALVKLEGVDTSEKARMFTNVEVYFPKKYVGEEEDSDDIPTWNYF----IGFKVEDV 115
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V + + I+ + L+P + + +++ ++ + ++ +
Sbjct: 116 NHGELGEIVAVDDSTMNVLFAIE-KGGEELLLPAHEEFITKLDKKKRLLTVEVPDGLI 172
>gi|257791132|ref|YP_003181738.1| PRC-barrel domain-containing protein [Eggerthella lenta DSM 2243]
gi|317488138|ref|ZP_07946713.1| PRC-barrel domain-containing protein [Eggerthella sp. 1_3_56FAA]
gi|325832899|ref|ZP_08165572.1| putative 16S rRNA processing protein RimM [Eggerthella sp. HGA1]
gi|257475029|gb|ACV55349.1| PRC-barrel domain protein [Eggerthella lenta DSM 2243]
gi|316912766|gb|EFV34300.1| PRC-barrel domain-containing protein [Eggerthella sp. 1_3_56FAA]
gi|325485764|gb|EGC88228.1| putative 16S rRNA processing protein RimM [Eggerthella sp. HGA1]
Length = 173
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)
Query: 30 NNPIDLNRYVLYSNDNRELRILKMYRKN-KRFIATFSGIDNIHSASELRDLKLYAKRQDF 88
+++ + R R+L + F+ TF G+D+I A L +R D
Sbjct: 33 EEGMEVAFVPPRHDAPRRARVLSVQDAGRDAFLVTFEGVDSIDIAELLVGCSCLVRRADL 92
Query: 89 KDEELEEDEFFNTD-LEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM-EKTFLIPFT 146
+ L + D LE E D + + G V V +L + + L+P
Sbjct: 93 PESALAAE----ADGLEGFEVHDARAGFVGVVESVVENPGQFLLSVAPADGGRRVLVPLV 148
Query: 147 KFAVLEVNLQENKILIDPIAAGLN 170
V+ ++ +I +D L+
Sbjct: 149 DALVVGLDEDARRIDVDLPDGLLD 172
>gi|301311199|ref|ZP_07217127.1| 16S rRNA processing protein RimM [Bacteroides sp. 20_3]
gi|300830773|gb|EFK61415.1| 16S rRNA processing protein RimM [Bacteroides sp. 20_3]
Length = 177
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/174 (13%), Positives = 63/174 (36%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDN--RELRILKMYRKN 57
M++ +++ + HG+ GE+ + + ++ D Y++ D + K
Sbjct: 1 MIREEEVFKIGQFAKPHGIKGELSLVTNSDVLEDAEDPYIVCEMDGILVPFFVEDFRYKT 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
+ +++ A +++ +E+L D +++ D Q Y
Sbjct: 61 DTVVLVKLEDVNSEEDARMFVGKEVFYPLDAVDEEDLVGDMTWDS-FIGYTVTDVQKGYL 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V +L + + + LIP + + E + + + + +
Sbjct: 120 GEITDVDETTINVLLRVDHK-GEELLIPAVEELITEADHEARSLTVSLPEGLIE 172
>gi|260909933|ref|ZP_05916621.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635978|gb|EEX53980.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 183
Score = 83.1 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMYRKNK-R 59
D + +G HG+ GE+ + ++ D ++ D + K
Sbjct: 14 DNFYKIGKLGKPHGVKGEISFH-FDDDIFDRTEADFLALEVDGLLVPFFFEEYRFKGSET 72
Query: 60 FIATFSGIDNIHSASELRDLKLYAKR--QDFKDEELEEDEFFNTDLEEMETFDRQ-GKYW 116
+ F ID A EL ++ R D D EL + D K
Sbjct: 73 ALVKFVNIDTQERAKELTGCNVFFPRQGADNPDAELS-----WAAIVGFMVKDAGTNKPL 127
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + ++ E+ L+P + + V+ Q+++I + L+
Sbjct: 128 GTILAVDDSTVNTLFEVDVNGSSPLLLPASYDLIAGVDAQKHEITMHIPDGILD 181
>gi|328955465|ref|YP_004372798.1| 16S rRNA processing protein RimM [Coriobacterium glomerans PW2]
gi|328455789|gb|AEB06983.1| 16S rRNA processing protein RimM [Coriobacterium glomerans PW2]
Length = 179
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 20/175 (11%)
Query: 10 MATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL-----------RILKMYRKNK 58
+A I HG GEV P+ +LY L R+ ++ +
Sbjct: 8 IARIMRAHGSKGEVV-----AVPLQGLSMLLYEGLEVALTPPALDRDRFCRVERLTESSA 62
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ FS I A LR + A+R+D LE + D + G+
Sbjct: 63 GALVRFSCAHTIADAQSLRGCYVLARRRDIHPGPLEVS---VAHVLGRTVLDDRAGEIGK 119
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTT 173
V + + A + + T L+P + +L + E I + + L+
Sbjct: 120 VREILSTPAHDVWTVSGTGYGDVLVPVIERVILGI-PDEGPIRVHLMDGLLSANE 173
>gi|251772983|gb|EES53540.1| probable 16S rRNA processing protein RimM [Leptospirillum
ferrodiazotrophum]
Length = 182
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSND--------NRELRILKMY 54
+L+ +G + G+ G + ++NP ++L + NR L +
Sbjct: 6 LLVGRMGRSFGVVGYGRVHLLSDNPNRFYGDVGQSFLLRTPSRGGKQGLRNRRLLLEDAM 65
Query: 55 RKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
K+ + + G D+ S E+ +++ + +D + E E DL D +
Sbjct: 66 DKSGSLLVKWKGFDSPESLREIVGWEIFWEGEDDWVPDDPEIE-RLDDLVGFVVRDCDDE 124
Query: 115 -YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G + G Y+ +L I+ + L PF V +V+ ++ +
Sbjct: 125 QAVGFISGYYDRPGQDLLAIETATGQEVLCPFVLELVPKVDRGNREVFVR 174
>gi|154495072|ref|ZP_02034077.1| hypothetical protein PARMER_04119 [Parabacteroides merdae ATCC
43184]
gi|154085622|gb|EDN84667.1| hypothetical protein PARMER_04119 [Parabacteroides merdae ATCC
43184]
Length = 173
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-YVLYSNDN--RELRILKMYRKN 57
M+K + + + HG+ GE+ + + ++ D + Y++ D I + K
Sbjct: 1 MIKKEDVFKIGQFAKPHGIKGEIALVTNSDVFDDSDDPYIICEMDGILVPFFIEEYRYKT 60
Query: 58 KRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYW 116
I +D+ +A E + +++ + ++L D +++ D
Sbjct: 61 DTVILLKLKNVDDEKAAREFSNREVFYSLDEVDRDDLVGDMTWDS-FIGYRVIDEHHGEI 119
Query: 117 GQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ V +L+I + + L+P + +L + + + + L+
Sbjct: 120 GEITDVDESTINVLLQIDHN-GEELLLPAAEELILSADHENKTLAVSVPEGLLD 172
>gi|218128794|ref|ZP_03457598.1| hypothetical protein BACEGG_00366 [Bacteroides eggerthii DSM 20697]
gi|317475371|ref|ZP_07934635.1| 16S rRNA processing protein RimM [Bacteroides eggerthii 1_2_48FAA]
gi|217989022|gb|EEC55338.1| hypothetical protein BACEGG_00366 [Bacteroides eggerthii DSM 20697]
gi|316908399|gb|EFV30089.1| 16S rRNA processing protein RimM [Bacteroides eggerthii 1_2_48FAA]
Length = 178
Score = 82.3 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 69/184 (37%), Gaps = 15/184 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIRKEEVYKIGIFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F +
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEEAGPGELSWDFF-----VGFRMEEIH 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
G+V V ++ + + + LIP + +++++ + I +D L
Sbjct: 115 YGKLGEVTDVDTATLNTLFVV-DYKGEELLIPAQEDFIIDIDRKHKVITMDLPEGLLALD 173
Query: 173 TMKN 176
M+
Sbjct: 174 DMEE 177
>gi|110004277|emb|CAK98615.1| hypothetical 16s rrna processing protein [Spiroplasma citri]
Length = 163
Score = 82.3 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 10/167 (5%)
Query: 4 LDKLVLMATIGTTHGLNGEVY---IDSYANNPIDLNRYVLYSNDN--RELRILKMYRKNK 58
++ L+ + I H + GEV + + N LN+ + + ++K+ +
Sbjct: 1 MEDLLKIFKIKKPHAIKGEVKATLLINIKNINKLLNKLMFIQVQMMYTPVTLIKITATKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+I F NI+ ++ L+ ++ D E+ E +L F K G
Sbjct: 61 DYILKFKDFTNINEVISFKECYLFGQKTDLNYAEVINQE----NLINFTVF-HSHKKIGV 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPI 165
+ + A + EIK T +IP V +VNLQ+ KI++ +
Sbjct: 116 LVNQFETKAHLVFEIKTTDGTLMMIPNVDAYVEQVNLQQQKIILKRM 162
>gi|116515179|ref|YP_802808.1| 16s rRNA processing protein [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285425|sp|Q057I4|RIMM_BUCCC RecName: Full=Ribosome maturation factor rimM
gi|116257033|gb|ABJ90715.1| 16s rRNA processing protein [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 169
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 8/146 (5%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELR-----ILKMYRKNKRFI 61
++ + IG +G+ G ++ SY ++ Y + + + I+ F+
Sbjct: 1 MITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFL 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
I+N + K +L+ E++ D+ FD + K G +
Sbjct: 61 IKIKDINNRTQTLNFIKQNILIKNFQLP--KLKNKEYYWNDIFSCYIFDLKKKKIGSIKN 118
Query: 122 VYNFGAGSILEIKNTMEKTFLIPFTK 147
+ + LEI +K IPF +
Sbjct: 119 IIDNKFYCTLEI-LYKKKKIYIPFIQ 143
>gi|203284594|ref|YP_002222334.1| 16S rRNA processing protein RimM [Borrelia duttonii Ly]
gi|201084037|gb|ACH93628.1| 16S rRNA processing protein RimM [Borrelia duttonii Ly]
Length = 166
Score = 81.9 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 11/163 (6%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSND---NRELRILKMYRKNKRFIAT 63
I +++G+NG I S +++ N ++ + E+ + + +N +
Sbjct: 5 GIILSSYGINGYAKIKSISNGFSDFFCLKNSKLVLKKKFCCSVEVTVEDVSLRNNSLLLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + L +L+ D +LE+DE++ L + G G V +
Sbjct: 65 FREFNAPEPIKNLIGFELWV--SDELASKLEQDEYYFGKLIGYRVVN-DGVELGIVVSFF 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+LEIK ++ F +PF + ++N + I + +
Sbjct: 122 ECSKSVLLEIK-VGDRLFFVPFLDVYLGDINRELKTIELKVLE 163
>gi|42560961|ref|NP_975412.1| 16S rRNA processing protein RIMM [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|42492458|emb|CAE77054.1| 16S RRNA PROCESSING PROTEIN RIMM [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|301320907|gb|ADK69550.1| 16S rRNA processing protein RimM [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 162
Score = 81.5 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
L+ + I T + G+V + + ++ +N + + +NDN + LRI ++
Sbjct: 4 NLIKIGVIVNTFSIKGQVKVILNSDIVIDDLNKINTFFIETNDNFQVLRIQEINLNKNYL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQV 119
I F ++NI+ + ++ ++Y + T L + F K G +
Sbjct: 64 IVKFLNLNNINDVIKFKNKEIYCLKNQN-----------ITQLVSLINFKFTSFKTNGII 112
Query: 120 CGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
N ++++K+ K F +P + E++ + I+ +
Sbjct: 113 IDYMNNSYQQLIKVKSEDLKEFWVPLVDVFIKEIDYENQIIIAKNVEGL 161
>gi|195953642|ref|YP_002121932.1| 16S rRNA processing protein RimM [Hydrogenobaculum sp. Y04AAS1]
gi|195933254|gb|ACG57954.1| 16S rRNA processing protein RimM [Hydrogenobaculum sp. Y04AAS1]
Length = 169
Score = 81.2 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 13/160 (8%)
Query: 5 DKLVLMATIGTTHGLNGEV-YIDSYANNPI----DLNRYVLYSNDNRELRI--LKMYRKN 57
+ V + +T GL G++ + + + +L + L + +E + + +
Sbjct: 3 EDKVTIGRFLSTFGLKGDLEVVFEFEEDIDFYIKNLKQIYLQNKQTKEFKAFNVTFKKHQ 62
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+ + GID + A + ++A +D +ED F +L + G+ G
Sbjct: 63 NKILCHIKGIDTVEMAKSFCNATVFASAKDLPR---KEDTVFLFELFGKKVKLDSGEELG 119
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQE 157
++ V+ + LEI ++IP + +++++ +
Sbjct: 120 RLTNVFKYANKDYLEI---DFGKYIIPAEEPFLVKLDKDQ 156
>gi|269215560|ref|ZP_06159414.1| 16S rRNA processing protein RimM [Slackia exigua ATCC 700122]
gi|269131047|gb|EEZ62122.1| 16S rRNA processing protein RimM [Slackia exigua ATCC 700122]
Length = 188
Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 6/115 (5%)
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEE--DEFFNTDLEEMETFDRQGKY 115
+ F GI + +A LR D + E+ DL D +
Sbjct: 73 GEWSVEFEGISDRDAAEALRGSHCLVAEADLPEGFDAARSREY---DLIGFSVVDGRLGR 129
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G++ + A +L ++ LIP + + ++ I + +
Sbjct: 130 IGRLAEISEMPASDMLVVEGASG-DILIPAVEEMISSIDDISRTIHVTLPDGLVE 183
>gi|203288128|ref|YP_002223143.1| 16S rRNA processing protein RimM [Borrelia recurrentis A1]
gi|201085348|gb|ACH94922.1| 16S rRNA processing protein RimM [Borrelia recurrentis A1]
Length = 166
Score = 80.8 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 13/164 (7%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDN----RELRILKMYRKNKRFIA 62
I +++G+NG I S +++ L L N E+ + + +N +
Sbjct: 5 GIILSSYGINGYAKIKSISNGFSDF-FCLKNSKLVLKKNFCCLVEVTVEDVSLRNNSLLL 63
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
F + L +L+ D +LE+DE++ L + G G V
Sbjct: 64 KFREFNAPEPIRNLIGFELWV--SDELASKLEQDEYYFGKLIGYRVVN-DGVELGIVVSF 120
Query: 123 YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ +LEIK ++ F +PF + ++N + I + +
Sbjct: 121 FECSKSVLLEIK-VGDRLFFVPFLDVYLGDINRELKTIELKVLE 163
>gi|307564646|ref|ZP_07627176.1| 16S rRNA processing protein RimM [Prevotella amnii CRIS 21A-A]
gi|307346574|gb|EFN91881.1| 16S rRNA processing protein RimM [Prevotella amnii CRIS 21A-A]
Length = 173
Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 14/178 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMY-R 55
M++ + + + +G HG++GE+ ++++ D Y+L D I + R
Sbjct: 1 MIRHEDVYKIGYLGKPHGVHGEMQ-FIFSDDVFDTTDADYLLIELDGILVPFFIEEYRFR 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKR--QDFKDEELEEDEFFNTDLEEMETFDR-Q 112
+ + F I+ A L + R + K E L + + D
Sbjct: 60 SEQMALIKFEDINTEEEARRLTGSVVLFPRKIAEEKSESLS-----LSQIVNYTLIDNKT 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GK G++ G+ + ++ E+ + L+P ++ + I + L+
Sbjct: 115 GKTIGKITGIDDSTVNTLFEVTTLGGQELLVPVNTNLFESIDTSKKIIKMVIPEGLLD 172
>gi|313665436|ref|YP_004047307.1| 16S rRNA processing protein RimM [Mycoplasma leachii PG50]
gi|312949869|gb|ADR24465.1| 16S rRNA processing protein RimM [Mycoplasma leachii PG50]
Length = 162
Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 66/168 (39%), Gaps = 15/168 (8%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDN-RELRILKMYRKNKRF 60
L+ + I T + G+V + + ++ +N + + +NDN + LRI ++
Sbjct: 4 NLIKIGVIVNTFSIKGQVKVILNSDIVIDDLNKINTFFIKTNDNFQVLRIQEINLNKNYL 63
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F ++NI+ + ++ ++Y + + L + K G +
Sbjct: 64 IVKFLNLNNINDVIKFKNKEIYCLKNQNITRLVS--------LINFK--FTSFKTNGIII 113
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
N ++++K+ K F +P + E++ + I+ +
Sbjct: 114 DYMNNSYQQLIKVKSEDLKEFWVPLVDVFIKEIDYENQMIIAKNVEGL 161
>gi|313203984|ref|YP_004042641.1| 16S rRNA processing protein rimm [Paludibacter propionicigenes WB4]
gi|312443300|gb|ADQ79656.1| 16S rRNA processing protein RimM [Paludibacter propionicigenes WB4]
Length = 172
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 11/176 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDN--RELRILKMYRK 56
M+ + + + HG+NGE+ S+ ++ D Y ++ + + K
Sbjct: 1 MILKSSVFPIGQVNKPHGVNGEMS-FSFTSDIFDREAVPYFVFEIQGILVPFFLEEYRFK 59
Query: 57 NKRF-IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEF-FNTDLEEMETFDRQGK 114
+ G+ A L +Y ++ + E E E + D +
Sbjct: 60 GSTTGLLKLEGVTTEEQARGFYGLTIYLPKKFLEKVETAEIELDYFA---GFSLVDAEKG 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V + I + LIP + + +++ ++ I + L+
Sbjct: 117 LLGVISEVDQTTENVLFVIPTKDD-ELLIPAGEEYIEDIDHEKKIIYVRLPEGLLD 171
>gi|256826489|ref|YP_003150448.1| 16S rRNA processing protein RimM [Cryptobacterium curtum DSM 15641]
gi|256582632|gb|ACU93766.1| 16S rRNA processing protein RimM [Cryptobacterium curtum DSM 15641]
Length = 234
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 21/181 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR------YVLYSNDNRELRILKMYRKN 57
+ V A I T L GE+ + P L+ RE ++ +
Sbjct: 1 MSAWVKAACIIKTKHLQGELVVRKVDRFPFLLSEGMQVYFVPPTLCGPREGHVVSVSPAR 60
Query: 58 -KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDL----EEMETFDRQ 112
+ +F +D+I SA EL + D + L E D +
Sbjct: 61 EGEWTVSFDTVDDIASAEELVGSWCLIAKSDVPEPSEGA-------LPLLCEGWRVVDTK 113
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEK---TFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G + + A S+L ++ ++E LIP + +++ + I + L
Sbjct: 114 RGELGALSAIIEQPAQSLLSVEGSVEGRLGEILIPAVDEFICQIDTADRCITVQLPEGLL 173
Query: 170 N 170
+
Sbjct: 174 D 174
>gi|325114425|emb|CBZ49982.1| putative zinc finger (C2H2 type) protein [Neospora caninum
Liverpool]
Length = 485
Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 39/206 (18%)
Query: 2 VKLD-KLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDNR----ELRILK 52
++ + + HGL GEV + + + V Y+ R L I +
Sbjct: 63 KTMESDWFSIGKVAGVHGLKGEVKVRATTYRIRERLCEPGVRVFYTPPGRGRLSSLEIER 122
Query: 53 MYRK--NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF- 109
R ++ F+ F +++ +SA L L +EL +F +D+
Sbjct: 123 TRRTAESRVFLVKFKNVEDRNSAMSLNGGLLLVSAHQA-RQELPPGKFLLSDISGFFVTV 181
Query: 110 --DRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV----NLQENKILID 163
D Q G++ V K T + +IP + LE+ ++
Sbjct: 182 HGDPQKNKIGRIVRVIP---------KETTARESVIPAADDS-LEIMLYRDVAAK----- 226
Query: 164 PIAAGLNNTTMKNPQYDCPLDSAGKK 189
L++ P P + G+K
Sbjct: 227 ---PLLHDFAP--PPRPLPAEIFGEK 247
>gi|282881150|ref|ZP_06289837.1| 16S rRNA processing protein RimM [Prevotella timonensis CRIS 5C-B1]
gi|281304954|gb|EFA97027.1| 16S rRNA processing protein RimM [Prevotella timonensis CRIS 5C-B1]
Length = 169
Score = 79.6 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 14/176 (7%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDN--RELRILKMYRK 56
M+K + + + IG HG+ GE+ + ++ D +++ D + +
Sbjct: 1 MIKKEDVYRIGQIGKPHGVKGELSFH-FEDDVFDRTDADHLILEVDGILVPFFFEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGK 114
N F +D A EL +++ R + L D G
Sbjct: 60 NDVTAYIKFCDVDTEVQARELIGSEVFFPRSVAHQDGACRS---WAQLLGFSLIDATTGH 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + N + E+++ LIP + + +++ ++++I I L+
Sbjct: 117 QIGVIQSIDNTTLNVLFELEDGK----LIPANEELIADIDGEKHQIFITLPKGLLD 168
>gi|256384121|gb|ACU78691.1| 16S rRNA processing protein RimM [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256384953|gb|ACU79522.1| 16S rRNA processing protein RimM [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455701|gb|ADH21936.1| 16S rRNA processing protein RimM [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 164
Score = 79.6 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDN-RELRI--LKMYRKNK 58
L+ + I T + G+V + D ++ ++ + + +N+N + LR+ + + +
Sbjct: 4 NLIKIGVIVNTFSIKGQVKVILNDDIMIDDLNKIDTFFIKTNNNFQVLRVQNITLNKTKN 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F +DNI+ + ++ ++Y + + L + K G
Sbjct: 64 QLIVKFLNLDNINDVIKYKNQEIYCLKDKNISQ--------IISLIGFKFVSL--KTNGI 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ N ++++K+ +K F +P + E++ Q I+ +
Sbjct: 114 ISDYMNNTYQQLVKVKSENQKEFWVPLVDVFIKEIDYQNKVIIAKDVEGL 163
>gi|299140085|ref|ZP_07033254.1| 16S rRNA processing protein RimM [Acidobacterium sp. MP5ACTX8]
gi|298597931|gb|EFI54100.1| 16S rRNA processing protein RimM [Acidobacterium sp. MP5ACTX8]
Length = 213
Score = 79.6 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 32/193 (16%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI--------------L 51
K V +A+I G GEV + + + L + ++ L
Sbjct: 19 KWVAIASILRPQGRKGEVLSELLTDLTDQFHEGRLVTLAKKDAVHPLPSTVPVALEGHWL 78
Query: 52 KMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
+ R + +G D+I A L ++ ++ + E D F+ DL + F+
Sbjct: 79 PTGKNAGRIVLKLAGCDSISQAELLAGQQVMIPAEELPELEE--DTFYVADLLDCTLFNG 136
Query: 112 QGKYWGQVCGVY--NFG--------AGSILEIKNTMEKT-----FLIPFTKFAVLEVNLQ 156
+ + G++ V A +L ++ + LIPF + + V++
Sbjct: 137 E-QPVGKIIDVQFATTPDGKTRLPDAAPLLCVELSGSTEEEVEPLLIPFVRAHLESVDVT 195
Query: 157 ENKILIDPIAAGL 169
+I++ +
Sbjct: 196 AKRIVMHLPEGLM 208
>gi|187918552|ref|YP_001884115.1| 16S rRNA-processing protein RimM [Borrelia hermsii DAH]
gi|119861400|gb|AAX17195.1| 16S rRNA processing protein RimM [Borrelia hermsii DAH]
Length = 166
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 11 ATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSN--DNRELRILKMYRKNKRFIAT 63
I +++G+NG + S +NN D ++ VL + E+++ + NK +
Sbjct: 5 GIILSSYGINGYAKVKSISNNFNDFLDLKGSKLVLKKECCSSIEVKVEDVSLMNKSLLLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F D +L +L+ D +LEEDE++ +L + + G+ G V Y
Sbjct: 65 FEEFDAPEPIKDLIGFELWV--NDEFASKLEEDEYYFGELIGYKLIN-NGQELGVVVSFY 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+LE+K K F +PF + ++N + I
Sbjct: 122 ECVKSILLEVK-VGSKLFFVPFLNVYLGDINRELKTI 157
>gi|227536352|ref|ZP_03966401.1| 16S rRNA processing protein [Sphingobacterium spiritivorum ATCC
33300]
gi|300771527|ref|ZP_07081402.1| 16S rRNA processing protein RimM [Sphingobacterium spiritivorum
ATCC 33861]
gi|227243728|gb|EEI93743.1| 16S rRNA processing protein [Sphingobacterium spiritivorum ATCC
33300]
gi|300761516|gb|EFK58337.1| 16S rRNA processing protein RimM [Sphingobacterium spiritivorum
ATCC 33861]
Length = 174
Score = 78.8 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNREL---RILKMYRKNK 58
+ +D+ + I T GL GE+ + + DL+ VL+ N++L + + ++
Sbjct: 1 MTIDQSFYIGYISKTRGLKGELQLFFEFEDYQDLDIDVLFVEINKKLVPYFVENIKLQSN 60
Query: 59 -RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
+D+I A L KLY E + D+F TDL+ D G
Sbjct: 61 STAYLNLEDVDHIDKAQPLVHKKLYLPNDKMP--ERDPDDFRLTDLKGFLVIDEVHGELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ V I + + K + P +L ++ +E I +D +
Sbjct: 119 EIVEVQELPQQFIARV-DFNGKELMFPLNDDLILGIDPEEEIIEVDLPEGLVE 170
>gi|331703420|ref|YP_004400107.1| 16S rRNA processing protein rimM [Mycoplasma mycoides subsp. capri
LC str. 95010]
gi|328801975|emb|CBW54129.1| 16S rRNA processing protein rimM [Mycoplasma mycoides subsp. capri
LC str. 95010]
Length = 164
Score = 78.5 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 6 KLVLMATIGTTHGLNGEVYI----DSYANNPIDLNRYVLYSNDN-RELRI--LKMYRKNK 58
L+ + I T + G+V + D ++ ++ + + +N+N + LRI + + +
Sbjct: 4 NLIKIGVIVNTFSIKGQVKVILNDDIMIDDLNKIDTFFIKTNNNFQVLRIQNITLNKTKN 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+ I F +DNI+ + ++ +Y + + L + K G
Sbjct: 64 QLIVKFLNLDNINDVIKYKNQDIYCLKDKNISQ--------IISLIGFKFVSL--KTNGI 113
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ N ++++K+ +K F +P + E++ Q I+ +
Sbjct: 114 ISDYMNNTYQQLVKVKSENQKEFWVPLVDVFIKEIDYQNRVIIAKDVEGL 163
>gi|83319392|ref|YP_424517.1| 16S rRNA processing protein RimM, putative [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
gi|83283278|gb|ABC01210.1| 16S rRNA processing protein RimM, putative [Mycoplasma capricolum
subsp. capricolum ATCC 27343]
Length = 164
Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 19/171 (11%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDN-RELRILKM--YRKNK 58
L+ + I T + G+V + + ++ ++ + + +NDN + LRI ++ +
Sbjct: 4 NLIKIGVIVNTFSIKGQVKVILNSDIMIDDLNKIDTFFIKTNDNFQVLRIQEINLNKNKN 63
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWG 117
I F ++NI+ + ++ ++Y + T L + F K G
Sbjct: 64 YLIVKFLNLNNINDVVKYKNKEIYCLKNQN-----------ITQLVSLINFKFTSFKTNG 112
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
+ N ++++K+ K F +P + E++ + I+ +
Sbjct: 113 IIIDYMNNSHQQLIKVKSEDLKEFWVPLVDVFIKEIDYENQIIIAKNVEGL 163
>gi|291514579|emb|CBK63789.1| 16S rRNA processing protein RimM [Alistipes shahii WAL 8301]
Length = 187
Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 30/187 (16%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKM-----YRKNKRFIA 62
V I G G V + Y P D L + R A
Sbjct: 3 VPAGRINKLFGTEGGVMLSLYPAFPEDFTTDTPLRVTIDALEVPLWCERFERRGQSGATA 62
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQ---------- 112
TF+ D A EL L+ + + E ++DEF+ DL +
Sbjct: 63 TFADFDTERRAQELVGLEFRIE----MNGEEDDDEFYLEDLIGFAVVAEEAGASSGRAAT 118
Query: 113 ----------GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
GK G V Y+ A + E++ + L+P + + ++ + + +
Sbjct: 119 AAGETGACASGKLCGTVTDYYDSDANPLFELE-IGGRQVLVPAVEEFIARIDFEGRTMHL 177
Query: 163 DPIAAGL 169
L
Sbjct: 178 VLPEGLL 184
>gi|153809488|ref|ZP_01962156.1| hypothetical protein BACCAC_03806 [Bacteroides caccae ATCC 43185]
gi|149127869|gb|EDM19092.1| hypothetical protein BACCAC_03806 [Bacteroides caccae ATCC 43185]
Length = 179
Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 64/168 (38%), Gaps = 9/168 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLVCLLDGIFVPFFMEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + G+D A ++++Y + EE E E D
Sbjct: 60 SDSTALVKLEGVDTAERARMFTNVEVYFPVKH--AEEAGEGELSWEFFVGFRMEDVHHGM 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID 163
G+V V ++ ++ + L+P + + ++ Q+ I ++
Sbjct: 118 LGEVVDVDTATVNTLFIVER-EGEELLVPAQEEFIRGIDQQQKLITVE 164
>gi|332883179|gb|EGK03462.1| 16S rRNA processing protein RimM [Dysgonomonas mossii DSM 22836]
Length = 172
Score = 77.3 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 74/173 (42%), Gaps = 7/173 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K ++ + + HG+ GE+ ++ N+ D Y++ D + + K
Sbjct: 1 MIKDSEVFKIGKLIKPHGIKGEIS-FAFENDIFDRVDCPYLICRIDGIFVPFFVDEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ TF G+D+ ++ L+++ R+ F++E ++ ++ D+
Sbjct: 60 GSETALITFEGVDSEEKVMQMSGLEVFFPRKYFEEESDDDIDYSWNFFIGFSVVDKVAGN 119
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G + + + ++ +K ++ +IP T+ V +++ ++ + ++
Sbjct: 120 LGTIEEIDDKTINTLFLVK-NDDEDLIIPATEDFVEKIDAKKRILYLNLPEGL 171
>gi|221054183|ref|XP_002261839.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808299|emb|CAQ39002.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 640
Score = 77.3 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNRELRI----LK 52
+++ ++ I HGL G + + S+ ++ RY+ + L I +K
Sbjct: 316 SIMNEFTVIGEIVGVHGLRGWLKVVSFTTFNDIRFKKNMYRYLFMNTYPYPLPIKVTDVK 375
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--- 109
K GI++ A +L+ + +++F D L E+++ +TDL + +
Sbjct: 376 ESLKVGFLYVKIEGINSRTDALKLKSCLICDDKRNFPD--LGENQYISTDLLNFDIYIFN 433
Query: 110 DRQGKYWGQV 119
D G+V
Sbjct: 434 DLTNTCIGKV 443
>gi|34849438|gb|AAP58937.1| 16S rRNA processing protein [Spiroplasma kunkelii CR2-3x]
Length = 163
Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYA-----NNPIDLNRYVLYSNDNRELRILKMYRKNK 58
++ L+ + + H + GE+ N ++ ++ + ++K+ +
Sbjct: 1 METLLKIFKLKKPHAIKGELKATLLIKIKNINKLLNKLMFIQVQMMYMPVTLIKITATKQ 60
Query: 59 RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQ 118
+I F NI+ ++ L+A++ D E+ E +L F Q K G
Sbjct: 61 DYILKFKEFTNINEVIAFKECYLFAQKADLNYIEIINQE----NLINFTVFHNQ-KKIGI 115
Query: 119 VCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ + A + EIK T +IP V +V+LQ+ +I++
Sbjct: 116 LVNQFETKAHIVFEIKTTDGTLMMIPNVDVYVEQVDLQQQEIIL 159
>gi|312890500|ref|ZP_07750036.1| 16S rRNA processing protein RimM [Mucilaginibacter paludis DSM
18603]
gi|311296958|gb|EFQ74091.1| 16S rRNA processing protein RimM [Mucilaginibacter paludis DSM
18603]
Length = 174
Score = 76.5 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR---ELRILKMY-RKN 57
+K+++ + T+ T GL GE+ + P LN L+ + +
Sbjct: 1 MKIEECFRIGTVTKTRGLKGELQAFIDFDVPEKLNFDALFIESAGRLIPYFVESFKMPQK 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
ID+I AS L +Y + + +E +F DL D G
Sbjct: 61 NIAFIYLEDIDHIDKASPLAKKDIYLP--NKLKPKKDESDFGLRDLMGFTAIDEDEGELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ + ++ ++ L P ++ + +++ + + +D L+
Sbjct: 119 EIIEIQELPQQ-LIATVVYKDREVLFPLSEGIITGIDIVKEIVYVDLPEGLLD 170
>gi|149278165|ref|ZP_01884303.1| 16S rRNA processing protein [Pedobacter sp. BAL39]
gi|149230931|gb|EDM36312.1| 16S rRNA processing protein [Pedobacter sp. BAL39]
Length = 175
Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 7/173 (4%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN-RYVLYSNDNR--ELRILKMYRK-N 57
+K+++ + I T GL GEV + + P L V + + + + N
Sbjct: 1 MKIEEAFYIGYITKTKGLKGEVQLFFEYDEPELLELDVVFADINGKMVPFFVSSYKLQTN 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWG 117
F +D+I A L K+Y D +D+F DL D G
Sbjct: 61 NTGNFYFDDVDHIDKAQPLLRKKIYLPLAKMPDR--SDDDFSYEDLVGYLVIDENLGELG 118
Query: 118 QVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ V + + + K + P + ++E++ +E + + L+
Sbjct: 119 EILEVNEYPQQFVATMSYKN-KEVMFPLNEDMIVEIDEEEALLRVLLPDGLLD 170
>gi|255535964|ref|YP_003096335.1| 16S rRNA processing protein RimM [Flavobacteriaceae bacterium
3519-10]
gi|255342160|gb|ACU08273.1| 16S rRNA processing protein RimM [Flavobacteriaceae bacterium
3519-10]
Length = 180
Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 20/180 (11%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILK-MYR 55
M K + + I HGL+G V++ + P ++ +V + + K +
Sbjct: 1 MKK-EDCYFLGKITRRHGLHGNVFLKLDTDQPEMYSKLDSIFVDINGMLVPFFVAKQSWS 59
Query: 56 KNKRFIATFSGIDNIHSASELR----DLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDR 111
K + I +F +S+ L +Y L ++F+ ++ E +
Sbjct: 60 KGETLIISFK-----NSSEALVDQTLGKDVYLPLSTLPV--LTGNKFYYHEVVGFEIREE 112
Query: 112 QGKYWGQVCGVYN-FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
GK G + V + G L N +K +IP + +LE+N +E + + ++
Sbjct: 113 DGKSCGIIESVNDQTGQHYFLL--NLADKQVVIPIIREWILELNREEKYLKMSLPEGLMD 170
>gi|5738538|emb|CAB52820.1| hypothetical protein [Prochlorococcus marinus]
Length = 103
Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDL----NRYVLYSNDNRELRILKMYRK---NKR 59
+ + I GL+G+V I+ ++ P +R++ Y N+ + L R+
Sbjct: 7 WLTIGKIVAPQGLSGKVRINPSSDFPERFIKSGDRWLQYDNEEPQKIQLNSGRQIPGKSI 66
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEF 98
++ F GID+ A L KL L EF
Sbjct: 67 YVVEFQGIDDREKAKALVGKKLLIDSSHRPT--LAPGEF 103
>gi|319903000|ref|YP_004162728.1| 16S rRNA processing protein RimM [Bacteroides helcogenes P 36-108]
gi|319418031|gb|ADV45142.1| 16S rRNA processing protein RimM [Bacteroides helcogenes P 36-108]
Length = 178
Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 66/177 (37%), Gaps = 15/177 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M++ +++ + HG++GE+ ++ ++ D Y++ D + + +
Sbjct: 1 MIRKEEVYKIGMFNKPHGIHGELS-FTFTDDIFDRVEAEYLICLLDGIFVPFFMEEYRFR 59
Query: 57 NKR-FIATFSGIDNIHSASELRDLKLYAK---RQDFKDEELEEDEFFNTDLEEMETFDRQ 112
+ + G+D A ++++Y ++ EL D F D
Sbjct: 60 SDTTALVKLEGVDTAERARMFTNIEVYFPVKHAEEVGPSELGWDFF-----TGFRMEDIH 114
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G+V V ++ + + + LIP + +++++ I ++ L
Sbjct: 115 HGKLGEVAEVDTSTINTLFVVNHK-GEELLIPAQEEFIVDIDQMHKVITMNLPEGLL 170
>gi|309806538|ref|ZP_07700541.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
03V1-b]
gi|308167081|gb|EFO69257.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
03V1-b]
Length = 80
Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL-----NRYVLYSNDNRELRILKMYRKNK 58
+ + + I THGL GEV + + + P N Y+ + ++ + +
Sbjct: 1 MTEYYFVGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKVKMTVETARFHKQ 60
Query: 59 RFIATFSGIDNIHSA 73
++ F I++I A
Sbjct: 61 AYLVKFLQINDIDEA 75
>gi|212550820|ref|YP_002309137.1| 16S rRNA-processing protein RimM [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|229485582|sp|B6YRA4|RIMM_AZOPC RecName: Full=Ribosome maturation factor rimM
gi|212549058|dbj|BAG83726.1| 16S rRNA processing protein RimM [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 171
Score = 75.0 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 62/176 (35%), Gaps = 12/176 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR----ELRILKMYR- 55
M+ ++L+ + +HG+ GE+ + NN + + R+
Sbjct: 1 MINFNELIKVGNFNKSHGIKGEIS-FVFTNNFFFKGKNSFLICEMEGIFIPFRVESYRSI 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQD-FKDEELEEDEFFNTD-LEEMETFDRQG 113
N + I+ I L +++ ++ ++ +L +F+ D D +
Sbjct: 60 SNSTVLVKLKNINTIEQTKLLTYQEVFLPKKQSAENTKLN---YFSWDHYIGFNIIDEKN 116
Query: 114 KYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
+ G + + ++ ++ K LIP ++ ++ + I + L
Sbjct: 117 REIGSITDIDKSTINTLFIVEKES-KEILIPTANEMIVTIDEKRKIIYMKLPVGLL 171
>gi|145652226|gb|ABP88159.1| hypothetical protein [Borrelia lonestari]
Length = 166
Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 11/163 (6%)
Query: 11 ATIGTTHGLNGEVYIDS----YANNPIDLNRYVLYSNDNR---ELRILKMYRKNKRFIAT 63
I +++G+NG I S +++ + R ++ ++R E+++ + N +
Sbjct: 5 GIILSSYGVNGYAKIKSISNCFSDFFVLKGRQLILKKESRSSVEVKVENISLLNNSLLLK 64
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY 123
F + +L +L+ D +LE+ E++ +L + + GK G V
Sbjct: 65 FEEFNAPEPIKDLVGFELWV--NDKFASKLEKGEYYFGELIGYKLVNA-GKELGIVVSFS 121
Query: 124 NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
G +LE+K K F IPF + +++ I + +
Sbjct: 122 ECGKSILLEVKTGS-KLFFIPFLDVYLGDIDRVLKTIELKVLE 163
>gi|297380325|gb|ADI35212.1| 16S rRNA processing protein RimM [Helicobacter pylori v225d]
Length = 147
Score = 74.2 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 46 RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLE 104
+E I Y K + I + A EL +L L+ ++ K L++ EFF DL
Sbjct: 16 KEYTI-HSYEHAKNLLF-LETIHTLEKAKELTNLGLFMSEEESKKLCVLKDGEFFYCDLV 73
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLEVNLQE 157
+ + + G+V + ++ K FLIP+ F + E+ LQ+
Sbjct: 74 GLSVV-EENEILGKVIEIQRISQIDYFMVETARSLVEKGLAKIFLIPYRDFYIKEILLQD 132
Query: 158 NKILIDPIAAGLNNT 172
KI + L N+
Sbjct: 133 KKITTNNAKTLLENS 147
>gi|237714074|ref|ZP_04544555.1| RimM protein [Bacteroides sp. D1]
gi|262407126|ref|ZP_06083675.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_22]
gi|294647788|ref|ZP_06725342.1| 16S rRNA processing protein RimM [Bacteroides ovatus SD CC 2a]
gi|294808619|ref|ZP_06767358.1| 16S rRNA processing protein RimM [Bacteroides xylanisolvens SD CC
1b]
gi|229445898|gb|EEO51689.1| RimM protein [Bacteroides sp. D1]
gi|262355829|gb|EEZ04920.1| 16S rRNA processing protein RimM [Bacteroides sp. 2_1_22]
gi|292636880|gb|EFF55344.1| 16S rRNA processing protein RimM [Bacteroides ovatus SD CC 2a]
gi|294444190|gb|EFG12918.1| 16S rRNA processing protein RimM [Bacteroides xylanisolvens SD CC
1b]
Length = 183
Score = 73.8 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 9/182 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + EE E+ E + D
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNIEVYFPVKH--AEEAEDGELSWNFFIGFQMEDIHHGP 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V N ++ E+ L+P + ++ ++ ++ I ++ LN +
Sbjct: 118 LGEVIDVDNTTVNTLFV-VEREEEELLVPAQEEFIVGIDQKQKLITVELPEGLLNLEELD 176
Query: 176 NP 177
Sbjct: 177 AD 178
>gi|298479617|ref|ZP_06997817.1| 16S rRNA processing protein RimM [Bacteroides sp. D22]
gi|298274007|gb|EFI15568.1| 16S rRNA processing protein RimM [Bacteroides sp. D22]
Length = 183
Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 9/182 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + EE E+ E + D
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNIEVYFPVKH--TEEAEDGELSWNFFIGFQMEDIHHGP 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
G+V V N ++ E+ L+P + ++ ++ ++ I ++ LN +
Sbjct: 118 LGEVIDVDNTTVNTLFV-VEREEEELLVPAQEEFIVGIDQKQKLITVELPEGLLNLEELD 176
Query: 176 NP 177
Sbjct: 177 AD 178
>gi|91214930|ref|ZP_01251902.1| 16S rRNA processing protein RimM [Psychroflexus torquis ATCC
700755]
gi|91186535|gb|EAS72906.1| 16S rRNA processing protein RimM [Psychroflexus torquis ATCC
700755]
Length = 176
Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 9/175 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRK 56
M K D+ + I + GE+ I + P +V Y N + K +
Sbjct: 1 MTK-DECFYLGQIVSKFSFKGELQIKLDTDEPELYKNLESIFVDYRNKLIPFFVEKSNLQ 59
Query: 57 NKRFI-ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ ++ A +L +Y +L ++F+ ++ + D
Sbjct: 60 KSSLLRVKLEEVNEEADADDLLKRNVYLPLTKLP--KLGGNKFYYHEVIGYKAVDATHGE 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + + + ++ I K +IP + +V+ E+ I ++
Sbjct: 118 IGTIKFINDQTMQALFFIDFND-KEIIIPVNDRFIQKVDKDEHIIYFQTPEGLID 171
>gi|156081915|ref|XP_001608450.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148801021|gb|EDL42426.1| hypothetical protein PVX_111125 [Plasmodium vivax]
Length = 654
Score = 71.1 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNRELRI----LK 52
+++ ++ I HGL G + + S+ + RY+ + L I +K
Sbjct: 337 SIMNEFTVIGEIVGVHGLQGWLKVVSFTTFNDIRFKKNTYRYLFMNTYAYPLPIKLADVK 396
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--- 109
K GI + A +L+ + ++ F L E+++ +TDL + F
Sbjct: 397 ESLKVGFLYVKIEGIYSRTDALKLKSCLICDDKRKFPS--LSENQYISTDLLNFDVFILN 454
Query: 110 DRQGKYWGQV 119
D G+V
Sbjct: 455 DLSNTCIGKV 464
>gi|297622321|ref|YP_003703755.1| 16S rRNA processing protein RimM [Truepera radiovictrix DSM 17093]
gi|297163501|gb|ADI13212.1| 16S rRNA processing protein RimM [Truepera radiovictrix DSM 17093]
Length = 171
Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 14/169 (8%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYV--LYSNDNRELRILKMYRKNKRFIATFS 65
VL+ T+G T L G + + + ++ E + ++ + I F
Sbjct: 10 VLLGTLGKTFQLQGGLRFYALGEAEAAAIAALQRVFVAGFGERALARVRPVGAQQIVYFV 69
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNF 125
G+D +A L + +YA R + E F+ L + G+ G+V V
Sbjct: 70 GVDTPQAAKALVNADVYAPRAALPELETG---FYVDLLLGLPVRL-GGEVIGEVVEVIPK 125
Query: 126 G---AGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILID-PIAAGLN 170
+L + +T E LIP V +L E + + P L
Sbjct: 126 ATALGQDLLVV-DTGESEHLIPLQADYV---HLHETHVQLTNPPEGLLE 170
>gi|255027852|ref|ZP_05299838.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
J2-003]
Length = 58
Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEK 139
F+ ++ G+ G++ + GA + +K + +K
Sbjct: 1 FYFHEIIGCTVVTTDGEELGEITEILTPGANDVWVVKGSEQK 42
>gi|298372618|ref|ZP_06982608.1| 16S rRNA processing protein RimM [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275522|gb|EFI17073.1| 16S rRNA processing protein RimM [Bacteroidetes oral taxon 274 str.
F0058]
Length = 168
Score = 68.8 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 62/176 (35%), Gaps = 15/176 (8%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYID---SYANNPIDLNRYVLYSNDN--RELRILKMYR 55
M++ L + HG+ GE+ + ++ +L Y + ++ I
Sbjct: 1 MIERHDLTTIGKTIKPHGIAGEILCEFSLVLGDD--NLPEYFIIEDEGILVPFFIDSFRG 58
Query: 56 KNK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGK 114
+ K G+ + +A L ++ + + ++ E+ + L DR
Sbjct: 59 RAKFSAFVHLEGVTDERTARLLCGKEILTDKA--INCGEDDAEYGLSFLIGFTVVDRTYG 116
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G+V + + +++ + LIP + + +++ + I L+
Sbjct: 117 DIGKVTAIDDSTVNTLMAV-----GDRLIPAQEAFITKIDNTKKIIYTQLPEGLLD 167
>gi|95007500|emb|CAJ20724.1| 16s rRNA processing protein, putative [Toxoplasma gondii RH]
Length = 543
Score = 68.1 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 47/149 (31%), Gaps = 21/149 (14%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDNR----ELRILKMYRK 56
+ + + HGL GEV + + + R V Y+ R L I R
Sbjct: 127 SDWLSVGKVAGVHGLAGEVKVRATTYRVQERLCEPGRRVFYTPPGRGRLISLEIEWARRT 186
Query: 57 --NKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---DR 111
++ F+ F I + SA L L ++L + +D+ D
Sbjct: 187 AESRVFLMKFKNIGDRTSALSLNGGLLLISAHQA-RQDLPPGKVLVSDIAGFFVTVHGDP 245
Query: 112 QGKYWGQVCGVYN-------FGAGSILEI 133
Q G + V A LEI
Sbjct: 246 QRNKIGHIVRVIPKETTSVIPAADDSLEI 274
>gi|32266436|ref|NP_860468.1| hypothetical protein HH0937 [Helicobacter hepaticus ATCC 51449]
gi|32262486|gb|AAP77534.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 153
Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDE-ELEEDEFFNTDLEEMETFD--RQGKY-W 116
+ F G + SA++L +LY+ ++ K EL+E EF ++ + D G+
Sbjct: 33 LVQFEGYVSRESAAKLVHCELYSTLEESKAMCELKEGEFLWEEIIGADVCDRFENGELKL 92
Query: 117 GQVCGVYNFGAGSILEIKNTME-------KTFLIPFTKFAVLE 152
G++ + G L + K F IP + VL
Sbjct: 93 GKIKDIERIGTLDYLLVATDSALVSKGLNKQFFIPNVEHFVLS 135
>gi|258614841|ref|ZP_05712611.1| 16S rRNA processing protein RimM [Enterococcus faecium DO]
Length = 72
Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL---NRYVLYSNDNR---ELRILKMYRKN 57
+ + + + I T G+ GEV + S + P + + D + EL + +
Sbjct: 1 MTEYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQDGKAPVELTVKSHRKHK 60
Query: 58 KRFIATFSG 66
+ +F G
Sbjct: 61 NFDLLSFEG 69
>gi|189485023|ref|YP_001955964.1| RimM-like PRC domain protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170286982|dbj|BAG13503.1| RimM-like PRC domain protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 103
Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 100 NTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
+D+ E F++ GK G + + G+ + +K E LIP K V EVN+ K
Sbjct: 12 VSDILGFEVFNQNGKRLGILSDIILTGSNDVWVVKYYNE-EVLIPALKNIVKEVNVIRKK 70
Query: 160 ILI 162
I +
Sbjct: 71 IFV 73
>gi|295084962|emb|CBK66485.1| 16S rRNA processing protein RimM [Bacteroides xylanisolvens XB1A]
Length = 179
Score = 66.5 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 67/167 (40%), Gaps = 9/167 (5%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDN--RELRILKMYRK 56
M+K +++ + HG++GE+ ++ ++ D Y++ D I + +
Sbjct: 1 MIKKEEVYKIGLFNKPHGIHGELQ-FTFTDDIFDRVDCDYLICLLDGIFVPFFIEEYRFR 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ + GID A ++++Y + EE E+ E + D
Sbjct: 60 SDSTALVKLEGIDTAERARMFTNIEVYFPVKH--AEEAEDGELSWNFFIGFQMEDIHHGP 117
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
G+V V N ++ ++ E+ +P + ++ ++ ++ I +
Sbjct: 118 LGEVIDVDNTTVNTLFVVEREEEELL-VPAQEEFIVGIDQKQKLITV 163
>gi|282879217|ref|ZP_06287972.1| 16S rRNA processing protein RimM [Prevotella buccalis ATCC 35310]
gi|281298686|gb|EFA91100.1| 16S rRNA processing protein RimM [Prevotella buccalis ATCC 35310]
Length = 102
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR--YVLYSNDN--RELRILKMY-R 55
M+K + + + IG HG+ GE+ + ++ Y++ D + + R
Sbjct: 1 MIKEEDVYRIGKIGKPHGVKGELSFH-FTDDVFARTESSYLILKVDGIFVPFFLEEYRFR 59
Query: 56 KNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEE 92
+ + F +D+ A +L +++ R + ++
Sbjct: 60 SGETVLVKFCDVDSQDKARQLTGCEVFFPRAIAESDD 96
>gi|50365358|ref|YP_053783.1| 16S rRNA processing protein [Mesoplasma florum L1]
gi|81391754|sp|Q6F0S4|RIMM_MESFL RecName: Full=Ribosome maturation factor rimM
gi|50363914|gb|AAT75899.1| 16S rRNA processing protein [Mesoplasma florum L1]
Length = 166
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 16/170 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYI---DSYANNPIDLNRYVLYSNDNR---ELRILKMYRKNKR 59
L+ + I T G+ G V I S N I+ + + N N ++ + +
Sbjct: 5 NLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISMQKSH 64
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
+ F ++I+ + K+ + + +++ +++Q G+V
Sbjct: 65 LVVYFKEHNHINEVEIFKGKKVKYLNDNDAFSIFYDLTYYSV------VYNKQN---GKV 115
Query: 120 CGVYNFGAGSILEI-KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAG 168
G ++++ EK F +P ++ + I + I
Sbjct: 116 IETMFNGNHDLVKVLLENEEKAFWVPLVDVYTNNIDDESRIITLKNIEGL 165
>gi|256420375|ref|YP_003121028.1| 16S rRNA processing protein RimM [Chitinophaga pinensis DSM 2588]
gi|256035283|gb|ACU58827.1| 16S rRNA processing protein RimM [Chitinophaga pinensis DSM 2588]
Length = 173
Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 20/178 (11%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR-----ELRILKMYRK-N 57
++ + + + GL GE + L + R I K K +
Sbjct: 1 MNNYFSIGKLVSVFGLQGEFILKHSLGKRTALQGVDAIFLEERKNSFIPYFIQKSSVKDH 60
Query: 58 KRFIATFSGIDNIHSASELRDLKLYAKRQDFK-----DEELEEDEFFNTDLEEMETFDRQ 112
+ G+D A L +Y DFK L + D+Q
Sbjct: 61 EHMFVKLEGVDTKEDARRLVQTPVYLLEDDFKKQTSASAPLS--------MLGFMVKDKQ 112
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
G + V +L EK L+P + ++++V+ ++ + +D L+
Sbjct: 113 QGELGVIEEVIEMPMQ-VLVKVMYREKEALLPLNEQSLIKVDKKQQIVHVDLPDGLLD 169
>gi|68065726|ref|XP_674847.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493684|emb|CAH96484.1| conserved hypothetical protein [Plasmodium berghei]
Length = 435
Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNRELRI----LK 52
+++ ++ I HGL G + + S+ + RY+ ++ + I +K
Sbjct: 137 SFMNEFSVIGEIVGVHGLQGCLKVVSFTTFNDIRFKENSYRYIFMNSYPYPIPIKITYVK 196
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--- 109
K I + A L+ + ++ F D E+++ +TDL + +
Sbjct: 197 ESLKIGFLYIKIEKIYSRTDALRLKGCLICDDKKKFPDI--GENKYISTDLINFDIYIFN 254
Query: 110 DRQGKYWGQV 119
D G V
Sbjct: 255 DPTNIPIGTV 264
>gi|153217921|ref|ZP_01951444.1| 16S rRNA-processing protein [Vibrio cholerae 1587]
gi|124113288|gb|EAY32108.1| 16S rRNA-processing protein [Vibrio cholerae 1587]
Length = 58
Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNR 46
M K ++ +++ +G+++G+ G + + SY +NP + Y + D +
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQK 54
>gi|308126223|ref|ZP_07663678.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ4037]
gi|308110280|gb|EFO47820.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ4037]
Length = 51
Score = 64.6 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 91 EELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEI 133
EL EDEF+ +L M +G G V + G+ +L +
Sbjct: 9 PELSEDEFYWRELFGMHVVTTKGYDLGVVTDMLETGSNDVLVV 51
>gi|333029188|ref|ZP_08457249.1| Ribosome maturation factor rimM [Bacteroides coprosuis DSM 18011]
gi|332739785|gb|EGJ70267.1| Ribosome maturation factor rimM [Bacteroides coprosuis DSM 18011]
Length = 173
Score = 64.2 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDN--RELRILKMYRK 56
M++ ++++ + THG++GE+ ++ + N+ DL +++ D I + K
Sbjct: 1 MIREEEVIQVGFFTKTHGISGELSVE-FINDIFDLADPDFIICKLDGILVPFFIEEYRFK 59
Query: 57 NK-RFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY 115
+ +D+ + A +++Y + E E D + + D
Sbjct: 60 TDTTALIKLQDVDSENKAKRFTKVEIYLPNTLVESSE-EVDHYSWLSFKNFLITDTTIGE 118
Query: 116 WGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V + ++ N + LIP + ++ V+ + I ++ L
Sbjct: 119 IGEIIDVDESTLNVLFKV-NYSGEEILIPADESLIVGVDDDKRIIQMNLPEGLL 171
>gi|309806531|ref|ZP_07700534.1| ribosome maturation factor RimM family protein [Lactobacillus iners
LactinV 03V1-b]
gi|308167074|gb|EFO69250.1| ribosome maturation factor RimM family protein [Lactobacillus iners
LactinV 03V1-b]
Length = 90
Score = 64.2 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 75 ELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFD-RQGKYWGQVCGVYNFGAGSILEI 133
EL + LY +D +L + ++ L ++ FD G + + GA I EI
Sbjct: 5 ELLNKNLYVSDED--QTDLPKGSYYIHQLIGLDVFDYETKTKIGILTDIEMPGANDIWEI 62
Query: 134 KNTMEK 139
K
Sbjct: 63 TPNKGK 68
>gi|169350417|ref|ZP_02867355.1| hypothetical protein CLOSPI_01185 [Clostridium spiroforme DSM
1552]
gi|169292737|gb|EDS74870.1| hypothetical protein CLOSPI_01185 [Clostridium spiroforme DSM
1552]
Length = 84
Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRILKMYRKNK 58
+DK V + I TH L GE+ I S ++ + + Y+ Y ++ EL I+
Sbjct: 1 MDK-VKVGKIVGTHALKGELKIRSNSDFSNERFKKGNSLYIRYHGNDIELEIISSRFHKN 59
Query: 59 RFIATFSGIDNIHSASEL 76
++ F NI+ +
Sbjct: 60 NYLVAFKDHQNINLVENM 77
>gi|302335662|ref|YP_003800869.1| 16S rRNA-processing protein [Olsenella uli DSM 7084]
gi|301319502|gb|ADK67989.1| 16S rRNA-processing protein [Olsenella uli DSM 7084]
Length = 175
Score = 63.8 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 15/139 (10%)
Query: 10 MATIGTTHGLNGEVY------IDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIAT 63
+A + THG GEV + + + +R + + +
Sbjct: 8 IARVVKTHGKRGEVVTVPVHGLPPLLRPALKVAVVPPALKGDRLRVVASASGDGRGQLVR 67
Query: 64 FSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTD---LEEMETFDRQGKYWGQVC 120
SG+ + AS L L A+ D D F D L D + G++
Sbjct: 68 LSGVGGMGDASRLVGKTLLARVDDLP------DGFELHDACALLGRSVADERYGDLGRIA 121
Query: 121 GVYNFGAGSILEIKNTMEK 139
V A + + +
Sbjct: 122 EVLVGPANDVWVLDGPYGE 140
>gi|257784493|ref|YP_003179710.1| 16S rRNA-processing protein [Atopobium parvulum DSM 20469]
gi|257473000|gb|ACV51119.1| 16S rRNA-processing protein [Atopobium parvulum DSM 20469]
Length = 152
Score = 63.4 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKD------EELEEDEFFNTDLEEMETFDRQGK 114
+ TF + I A EL L + + L L E D++
Sbjct: 45 LVTFEDVTTISDAEELVGKTLLVEEDCLPENFGLVNTSL---------LVGREVRDKEHG 95
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGL 169
G++ V ++ I+ + + ++P + E ++ I + L
Sbjct: 96 SLGEITEVLVGPTQNVWVIEGSYGQ-IMMPAVDEFIHEAPVE-GSITVSIPQGLL 148
>gi|308234597|ref|ZP_07665334.1| 16S rRNA processing protein RimM [Atopobium vaginae DSM 15829]
gi|328944346|ref|ZP_08241810.1| hypothetical protein HMPREF0091_11035 [Atopobium vaginae DSM 15829]
gi|327491265|gb|EGF23040.1| hypothetical protein HMPREF0091_11035 [Atopobium vaginae DSM 15829]
Length = 176
Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 11 ATIGTTHGLNGEVY---IDSYANNPIDLNRY---VLYSNDNRELRILKMYRKNKRFIATF 64
A I +G GEV + ++ P + R L + +
Sbjct: 10 ARISKVYGNKGEVVAHFVHGFSFTPTSKQELYCIPPMLHRPRVLHVQAATCAADGLVLLC 69
Query: 65 SGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYN 124
+ +D+ A L R D DE+ ++ + D++ G V V
Sbjct: 70 AELDSRSMAESYVGTYLAINRCDLTDEQAKQS---IEPVLNRAVHDKRFGDLGVVSEVLR 126
Query: 125 FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
A L + +IP V ++ + I + L+
Sbjct: 127 SSAQDTLLVHGRY-SDVMIPLVPEFVDDITADTDVITTHIPQSLLD 171
>gi|146320666|ref|YP_001200377.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
98HAH33]
gi|145691472|gb|ABP91977.1| RimM protein, required for 16S rRNA processing [Streptococcus suis
98HAH33]
Length = 65
Score = 62.3 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 115 YWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNT 172
GQ+ + GA + +K +K L+P+ VL +++ N++ ++ + +
Sbjct: 8 LIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRVDVELLEGLDDEN 65
>gi|257471452|ref|ZP_05635451.1| 16S rRNA-processing protein RimM [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|311087289|gb|ADP67369.1| 16S rRNA-processing protein RimM [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087801|gb|ADP67880.1| 16S rRNA-processing protein RimM [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 77
Score = 62.3 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 94 EEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTME---KTFLIPFTK-FA 149
++++++ D+ + F+ Y G V + IL +KN ++ K LIPF
Sbjct: 2 KKNDYYWNDIINYKVFNIDQHYLGTVINLIRTRNNDILIVKNKLKIHQKNILIPFIDNKI 61
Query: 150 VLEVNLQENKILI 162
+ VN + IL+
Sbjct: 62 IKNVNTDKKFILV 74
>gi|213022767|ref|ZP_03337214.1| 16S rRNA-processing protein [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 77
Score = 61.5 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 8/64 (12%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFI 61
+ V++ +G+++G+ G + + S + + Y + + +++++ N+ I
Sbjct: 12 EPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLI 71
Query: 62 ATFS 65
Sbjct: 72 IKLE 75
>gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str.
17XNL]
gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
Length = 770
Score = 61.1 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYAN-----NPIDLNRYVLYSNDNRELRI----LK 52
+++ ++ I HGL G + + S+ + RY+ ++ + I +K
Sbjct: 452 SFINEFSVIGEIVGVHGLQGCLKVVSFTTFNDIRFKENSYRYIFMNSYPYPIPIKITYVK 511
Query: 53 MYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF--- 109
K I + A L+ + +++F D E+++ +TDL + +
Sbjct: 512 ESLKIGFLYIKIEKIYSRTDALRLKGCLICDDKKNFPDI--GENKYISTDLINFDIYIFN 569
Query: 110 DRQGKYWGQV 119
D G V
Sbjct: 570 DSTNIPIGTV 579
>gi|206895320|ref|YP_002247049.1| hypothetical protein COPRO5265_0701 [Coprothermobacter
proteolyticus DSM 5265]
gi|206737937|gb|ACI17015.1| hypothetical protein COPRO5265_0701 [Coprothermobacter
proteolyticus DSM 5265]
Length = 160
Score = 60.7 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKN-KR 59
M K + + G GL GE+Y + Y + I Y + L++ ++ R
Sbjct: 1 MPK--DRICLGRFGKVFGLKGEIYFNLYGSEDILRTTDEFYLENGTLLKVERLGVGPDGR 58
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
F+ G D S + K+Y K + D + ++L EM+ G+ G+V
Sbjct: 59 FVVKLLGYDTPESVETFVNQKVYV-----KGRSGKGDTYTTSELLEMDVI-VNGQVVGRV 112
Query: 120 CGVYNFGAGS--ILEIKNTMEKTFLIPFTKFAVLEVNLQENKILI 162
+ +L+I + + PFT+ A L ++ + I +
Sbjct: 113 LDLQGTDEAPFLLLDINGELRRA---PFTREA-LSIDRVKKTITV 153
>gi|218904972|ref|YP_002452806.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
gi|218536511|gb|ACK88909.1| 16S rRNA processing protein RimM [Bacillus cereus AH820]
Length = 68
Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNR-----YVLYSNDNRELRI-LKMYRKN 57
+ K + I THG+ GE+ + S + P + + Y+ + + +R++
Sbjct: 1 MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH 60
Query: 58 KRF 60
K F
Sbjct: 61 KTF 63
>gi|330936916|gb|EGH41041.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 61
Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 113 GKYWGQVCGVYNFGAGSILEIKNTME----KTFLIPFTKFAVLEVNLQENKILID 163
G+ G++ + G+ ++ +K + L+P+T+ VL +++ ++ +D
Sbjct: 2 GQLLGKIDHLLETGSNDVMVVKPCAGSLDDRERLLPYTEQCVLAIDMAAGEMKVD 56
>gi|303233271|ref|ZP_07319943.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
gi|302480661|gb|EFL43749.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
Length = 192
Score = 58.4 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVC 120
I F GI +I A++L+ L+ + L + L E DR G +
Sbjct: 65 IVAFEGITSISDATKLQGRFLFMESSHINPCVLAS---IPSQLLHKEVVDRTFGSLGTLT 121
Query: 121 GVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQEN 158
+ + A ++ LIP V ++
Sbjct: 122 EILSSSAQDTWVVRGRYG-DVLIPVHDTFV---DMDSR 155
>gi|163787263|ref|ZP_02181710.1| 16S rRNA-processing protein [Flavobacteriales bacterium ALC-1]
gi|159877151|gb|EDP71208.1| 16S rRNA-processing protein [Flavobacteriales bacterium ALC-1]
Length = 95
Score = 58.4 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 96 DEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNL 155
D+F+ ++ D G + G+ + A ++ EI LIP +++V+
Sbjct: 18 DKFYFHEVIGFTIKDENYGEVGVLRGINDSTAQALFEIDR-DGVEILIPMNDEFIVKVDR 76
Query: 156 QENKILIDPIAAGLN 170
+ I+++ ++
Sbjct: 77 EHKTIIVNTPVGLID 91
>gi|313157050|gb|EFR56480.1| conserved hypothetical protein [Alistipes sp. HGB5]
Length = 221
Score = 58.0 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 65/222 (29%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKM-YRKNKRFIA 62
+ I G +G V + YA+ P D + V L + R +A
Sbjct: 5 IPAGRINKLFGTDGGVMLSLYADFPADFDTDTPLLVTIDALEVPLWCERFERRGASGAVA 64
Query: 63 TFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF------------- 109
F+ D A EL L+ + +E +DEF+ DL
Sbjct: 65 AFADFDTERRAQELLGLEFRIR-----FDEENDDEFYMEDLIGFAVTGFEMRHGGTENGG 119
Query: 110 ---------------DRQGKYWG--------------------------QVCGVYNFGAG 128
+ G G +V Y+ A
Sbjct: 120 NGGNDDGNNANNDTCNDDGSRGGSNDNANANSAGSDAGDSMPPAGQFAGRVADYYDSEAN 179
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ E++ + L+P + + ++ + + + ++
Sbjct: 180 PLFELE-IGGRRVLVPAAEEFIAHIDFEGRTMKMVLPEGLID 220
>gi|291546239|emb|CBL19347.1| RimM protein, required for 16S rRNA processing [Ruminococcus sp.
SR1/5]
Length = 62
Score = 57.7 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDLN--RYVLYSNDNR 46
++ L+ + I TTHG+ GEV + ++ YVL
Sbjct: 1 MEDLLKVGVITTTHGVRGEVKVFPTTDDAERFLDIEYVLLDTGKE 45
>gi|258597143|ref|XP_001347597.2| mitochondrial preribosomal assembly protein rimM precursor,
putative [Plasmodium falciparum 3D7]
gi|254922481|gb|AAN35510.2| mitochondrial preribosomal assembly protein rimM precursor,
putative [Plasmodium falciparum 3D7]
Length = 736
Score = 55.7 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 9 LMATIGTTHGLNGEVYIDSYA---NNPIDLN--RYVLYSNDNREL--RILKMYRKNK--R 59
++ I GL G + + S+ + + RY+ +N N L +IL + K
Sbjct: 401 VIGQIIGVRGLLGCLKVVSFTTFNDIRFEPGSYRYIFMNNYNYPLPIKILDVKESQKVSF 460
Query: 60 FIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF---DRQGKYW 116
GI+ A +L++ + ++ F D L E+++ +TDL + D
Sbjct: 461 LYIKIEGINTRSDALKLKNCLICDDKRTFPD--LGENQYISTDLLNFDIHIFNDFSNISI 518
Query: 117 GQVCGVYN 124
G V G +
Sbjct: 519 GNVNGFLS 526
>gi|146387211|pdb|2DOG|A Chain A, Solution Structure Of The N-Terminal Domain Of Rimm From
Thermus Thermophilus Hb8
Length = 85
Score = 55.0 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFS 65
+LV + G + L G + + P+ L+ +Y + I +YR + + +
Sbjct: 2 RLVEIGRFGAPYALKGGLR---FRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLA 58
Query: 66 GIDNIHSASELRDLKLYAKRQDFKDEE 92
G+ + A L L++YA+ D E
Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLPPLE 85
>gi|218961747|ref|YP_001741522.1| hypothetical protein CLOAM1465 [Candidatus Cloacamonas
acidaminovorans]
gi|167730404|emb|CAO81316.1| hypothetical protein CLOAM1465 [Candidatus Cloacamonas
acidaminovorans]
Length = 176
Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 34 DLNRYVLYSNDNRELRI---LKMYRKNKRFIATFSGIDNIHSASEL-RDLKLYAKRQDFK 89
+L L N +R + +M + NK +I D + L +D+ + +
Sbjct: 35 ELEDLYLIFNSDRVFYVTISERMRKDNKTWI-KLKE-DGVSEEQFLHKDVVIAIDETAIE 92
Query: 90 DEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFA 149
EE + + L + G+ G V + GA +L+I ++ +L+PF +
Sbjct: 93 TEETSLN--Y---LIGYQVI-FAGEELGIVEDFFFNGAQDVLQIVDSKGTEYLVPFVDYY 146
Query: 150 VLEVNLQENKILI 162
+ V + + +I
Sbjct: 147 IDTV-IDNLRCVI 158
>gi|224438375|ref|ZP_03659302.1| hypothetical protein HcinC1_10321 [Helicobacter cinaedi CCUG 18818]
gi|313144817|ref|ZP_07807010.1| 16S rRNA processing protein [Helicobacter cinaedi CCUG 18818]
gi|313129848|gb|EFR47465.1| 16S rRNA processing protein [Helicobacter cinaedi CCUG 18818]
Length = 166
Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 61 IATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKY---WG 117
+ F G ++ SA++L + +LY+ + K L++ E +L D G
Sbjct: 48 LVIFQGYESRESAAKLINYELYSTLTESKKI-LKKGEILWQELIGTAISDTTDTKQRNLG 106
Query: 118 QVCGVYNFGAGSILEIKN-------TMEKTFLIPFTKFAVLEVNLQ 156
V + I+ + K F IP VL ++
Sbjct: 107 VVKDIERIAKIDYFLIQTHTELISQGLPKQFYIPNISQYVLSISTD 152
>gi|169350418|ref|ZP_02867356.1| hypothetical protein CLOSPI_01186 [Clostridium spiroforme DSM 1552]
gi|169292738|gb|EDS74871.1| hypothetical protein CLOSPI_01186 [Clostridium spiroforme DSM 1552]
Length = 64
Score = 53.0 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 112 QGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNN 171
K G+V +YN G IL I + K IP+ + +V+L I ++ I ++
Sbjct: 5 DDKIIGKVKTIYNNGRHDILNI-DYNGKNVAIPYVDAFIKDVDLNNEVIEVELIKGLIDE 63
Query: 172 T 172
Sbjct: 64 D 64
>gi|77412593|ref|ZP_00788880.1| 16S rRNA processing protein RimM [Streptococcus agalactiae CJB111]
gi|77161356|gb|EAO72380.1| 16S rRNA processing protein RimM [Streptococcus agalactiae CJB111]
Length = 133
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNR---ELRILKMYRKNK 58
+ + I T GL GE+ + S + + + L+ N+ ++ I ++
Sbjct: 59 EYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKGQVLALFDEKNQFVMDIEIASHCKQKN 118
Query: 59 RFIATFSGIDNIHSA 73
I F G+ +I+
Sbjct: 119 FDIIKFKGMYHINDI 133
>gi|168055705|ref|XP_001779864.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668677|gb|EDQ55279.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 633
Score = 52.3 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 105 EMETFDRQ-GKYWGQVCGVYNFGAGSIL---EIKNTMEK---------TFLIPFTKFAVL 151
+ + G+ G+V V N S ++ M K +LIP+ + V
Sbjct: 173 GWKVVLEETGEVVGRVEEVLNL--CSFWDPSVVEYCMLKVFDSNSPGIEYLIPWVEDIVK 230
Query: 152 EVNLQENKILIDPIAAGLN 170
EV+ +I I P L
Sbjct: 231 EVDCNAERIFIKPPEGLLE 249
>gi|261885663|ref|ZP_06009702.1| 16S rRNA processing protein RimM [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 80
Score = 51.9 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATF 64
V + +G T GL G + + ++ P + + N + ++K Y +N + F
Sbjct: 3 SDFVEVCILGKTVGLKGALKLHDRSDFPNQFKNGAKFYDINSKEFVIKSYDRNNNLVI-F 61
Query: 65 SGIDNIHSAS 74
D+I A
Sbjct: 62 ENYDSIDLAD 71
>gi|221501615|gb|EEE27385.1| 16S rRNA processing protein RimM, putative [Toxoplasma gondii VEG]
Length = 388
Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDNR----ELRILKMYRK 56
+ + + HGL GEV + + + R V Y+ R L I R
Sbjct: 313 SDWLSVGKVAGVHGLAGEVKVRATTYRVQERLCEPGRRVFYTPPGRGRLISLEIEWARRT 372
Query: 57 --NKRFIATFSGIDNI 70
++ F+ F I +
Sbjct: 373 AESRVFLMKFKNIGDR 388
>gi|221480860|gb|EEE19281.1| 16S rRNA processing protein RimM, putative [Toxoplasma gondii GT1]
Length = 388
Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDNR----ELRILKMYRK 56
+ + + HGL GEV + + + R V Y+ R L I R
Sbjct: 313 SDWLSVGKVAGVHGLAGEVKVRATTYRVQERLCEPGRRVFYTPPGRGRLISLEIEWARRT 372
Query: 57 --NKRFIATFSGIDNI 70
++ F+ F I +
Sbjct: 373 AESRVFLMKFKNIGDR 388
>gi|298528917|ref|ZP_07016320.1| hypothetical protein Dthio_PD1607 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510353|gb|EFI34256.1| hypothetical protein Dthio_PD1607 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 122
Score = 51.5 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 101 TDLEEMETFDRQGKYWGQVCGVY-NFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
++ G G V GV + G + ++ ++ + P + V+E + E
Sbjct: 12 HNVAGCPLMLPDGTAIGTVEGVKKHKGGCEVWMVRTEEDRQIMFPIYEEIVVECSPDE-H 70
Query: 160 ILIDPIAAGL----NNTTMKNPQY 179
+++DP A L +NP
Sbjct: 71 VVVDPPADLLQMYMEGKYPENPCR 94
>gi|237844755|ref|XP_002371675.1| 16S rRNA processing protein RimM, putative [Toxoplasma gondii ME49]
gi|211969339|gb|EEB04535.1| 16S rRNA processing protein RimM, putative [Toxoplasma gondii ME49]
Length = 388
Score = 51.5 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYA----NNPIDLNRYVLYSNDNR----ELRILKMYRK- 56
+ + + HGL GEV + + + R V Y+ R L I R
Sbjct: 314 DWLSVGKVAGVHGLAGEVKVRATTYRIQERLCEPGRRVFYTPPGRGRLISLEIEWARRTA 373
Query: 57 -NKRFIATFSGIDNI 70
++ F+ F I +
Sbjct: 374 ESRVFLMKFKNIGDR 388
>gi|308126224|ref|ZP_07663679.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ4037]
gi|308110284|gb|EFO47824.1| 16S rRNA processing protein RimM [Vibrio parahaemolyticus AQ4037]
Length = 67
Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 25 IDSYANNPIDLNRYVLY----SNDNRELRILKMYRKNKRFIATFSGIDNIHS 72
+ SY +N + Y + E ++ R NK +A G+D
Sbjct: 11 VFSYTDNAESIFDYSPWYINQKGKWVEYKVESWKRHNKGMVAKLEGMDVRED 62
>gi|124515659|gb|EAY57168.1| probable 16S rRNA processing protein RimM [Leptospirillum rubarum]
gi|206602285|gb|EDZ38767.1| Hypothetical protein CGL2_10665007 [Leptospirillum sp. Group II
'5-way CG']
Length = 108
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 94 EEDEFFNTDLEEMETFDRQ-GKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLE 152
E D F+ ++L M +D G G + Y ++ I + L P V +
Sbjct: 30 EGDIFWASELLGMSVYDVDSGNMVGHIVSCYERPGQDLIGI-DFRGTEILCPLVDPLVPK 88
Query: 153 VNLQENKILI 162
++ + ++ +
Sbjct: 89 IDRKRREVFV 98
>gi|307106005|gb|EFN54252.1| hypothetical protein CHLNCDRAFT_135796 [Chlorella variabilis]
Length = 434
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 134 KNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
++ + LIP+ V V+L + + P A L
Sbjct: 23 RSAPREEHLIPYVPQIVPSVDLAAGVVYVQPPAGLLE 59
>gi|298528916|ref|ZP_07016319.1| hypothetical protein Dthio_PD1606 [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510352|gb|EFI34255.1| hypothetical protein Dthio_PD1606 [Desulfonatronospira
thiodismutans ASO3-1]
Length = 122
Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 101 TDLEEMETFDRQGKYWGQVCGV-YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENK 159
++ G+ G + GV + G + E++ + + P + V+E + E
Sbjct: 12 HNVAGCPLRLPGGEVLGYIEGVKRHKGGCEVWEVRTEENRVIMFPIYEDIVVECSPDE-Y 70
Query: 160 ILIDPIAAGLNNTTM-KNPQYDCPL 183
+ +DP L+ K+P+ C
Sbjct: 71 VTVDPPRDLLDMYKEGKHPENPCQA 95
>gi|218680101|ref|ZP_03527998.1| 16S rRNA-processing protein [Rhizobium etli CIAT 894]
Length = 48
Score = 48.4 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 141 FLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMK 175
LIPF++ +VLE++L+ +LIDP+AAGL + +
Sbjct: 1 VLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEE 35
>gi|260907256|ref|ZP_05915578.1| hypothetical protein BlinB_18111 [Brevibacterium linens BL2]
Length = 40
Score = 47.6 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+K+ LIPF V EV+++ + + P A +
Sbjct: 1 MKHVDGHQALIPFVTEIVPEVDVEAGWVKVTPPAGLFD 38
>gi|167946319|ref|ZP_02533393.1| 16S rRNA processing protein RimM [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 70
Score = 47.6 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLY----SNDNRELRILKMYRKN 57
++ D++V+M + G+ G + S + +Y + + RE+++L+ R+
Sbjct: 1 MQSDEMVVMGRVSGVFGVCGWFKVYSDTKPREGILQYSQWYLQQHGEWREVKLLEGKRQG 60
Query: 58 KR 59
+R
Sbjct: 61 QR 62
>gi|309800033|ref|ZP_07694231.1| 16S rRNA processing protein RimM [Streptococcus infantis SK1302]
gi|308116353|gb|EFO53831.1| 16S rRNA processing protein RimM [Streptococcus infantis SK1302]
Length = 62
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDN---RELRILKMYRKNK 58
+ I T GL GE+ + S + + + L+ + R + I + K
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFSEERFKKGAELALFDEKDQFVRTVTIASHRKHKK 61
>gi|94992220|ref|YP_600319.1| 16S rRNA processing protein rimM [Streptococcus pyogenes
MGAS2096]
gi|94545728|gb|ABF35775.1| 16S rRNA processing protein rimM [Streptococcus pyogenes
MGAS2096]
Length = 83
Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR----YVLYSNDNRELRILKMYRKNKRFI 61
+ + I T GL GE+ + S ++ + + L+ + +R ++ + + K+ I
Sbjct: 2 EYFNVGKIVNTQGLQGEMRVLSVSDFAEERFKKGSQLALFDDKDRFVQEVTIVSHRKQSI 61
Query: 62 A 62
Sbjct: 62 L 62
>gi|169837238|ref|ZP_02870426.1| hypothetical protein cdivTM_09094 [candidate division TM7
single-cell isolate TM7a]
Length = 65
Score = 45.7 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRILK 52
++ LV + TI TH L G V I+S N + R +L +D + L +K
Sbjct: 1 MENLVNIGTIIGTHHLRGSVKINSIFENIELIQNERVLLEKDDKKRLLTVK 51
>gi|183179686|ref|ZP_02957897.1| 16S rRNA-processing protein [Vibrio cholerae MZO-3]
gi|183013097|gb|EDT88397.1| 16S rRNA-processing protein [Vibrio cholerae MZO-3]
Length = 35
Score = 45.3 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 1 MVKLDKLVLMATIGTTHGLNGEVYIDS 27
M K ++ +++ +G+++G+ G + + S
Sbjct: 9 MSKQNEKLVVGKLGSSYGIRGWLKVFS 35
>gi|260889504|ref|ZP_05900767.1| putative 16S rRNA-processing protein RimM [Leptotrichia hofstadii
F0254]
gi|260860915|gb|EEX75415.1| putative 16S rRNA-processing protein RimM [Leptotrichia hofstadii
F0254]
Length = 49
Score = 43.0 bits (101), Expect = 0.021, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 LDKLVLMATIGTTHGLNGEVYIDSYANNPIDL--NRYVLYSNDNRELRI 50
++ L+ + TI TH L G V I+S N + R +L ND + +
Sbjct: 1 MENLINIGTIVGTHHLRGSVKINSIFENIELIENERVLLEKNDKKNYLL 49
>gi|307067381|ref|YP_003876347.1| RimM protein, required for 16S rRNA processing [Streptococcus
pneumoniae AP200]
gi|306408918|gb|ADM84345.1| RimM protein, required for 16S rRNA processing [Streptococcus
pneumoniae AP200]
Length = 41
Score = 41.5 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 6 KLVLMATIGTTHGLNGEVYIDSYANNPIDLNR 37
+ I T GL GE+ + S + + +
Sbjct: 2 NYFNVGKIVNTQGLQGEMRVLSVTDFAEERFK 33
>gi|126724934|ref|ZP_01740777.1| hypothetical protein RB2150_13901 [Rhodobacterales bacterium
HTCC2150]
gi|126706098|gb|EBA05188.1| hypothetical protein RB2150_13901 [Rhodobacterales bacterium
HTCC2150]
Length = 38
Score = 40.7 bits (95), Expect = 0.099, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 5 DKLVLMATIGTTHGLNGEVYIDSY 28
+++V + IG ++G+ G+ I S+
Sbjct: 3 EQMVCVGAIGGSYGVKGDARIKSF 26
>gi|242398507|ref|YP_002993931.1| 50S ribosomal protein L35Ae [Thermococcus sibiricus MM 739]
gi|242264900|gb|ACS89582.1| 50S ribosomal protein L35Ae [Thermococcus sibiricus MM 739]
Length = 87
Score = 40.7 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 8 VLMATIGTTHGLNGEVY 24
+L+ I THG+ GEV
Sbjct: 52 LLVGKITRTHGIRGEVK 68
>gi|282878387|ref|ZP_06287178.1| conserved domain protein [Prevotella buccalis ATCC 35310]
gi|281299499|gb|EFA91877.1| conserved domain protein [Prevotella buccalis ATCC 35310]
Length = 64
Score = 40.3 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 111 RQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLN 170
+ G+ G + V + + E++ LIP + + +++ Q +I I L+
Sbjct: 5 QTGQLIGTIESVDDSTENVLFELEGDT----LIPANEDLIQQIDAQNKEITIQLPDGLLD 60
>gi|29827281|ref|NP_821915.1| hypothetical protein SAV_740 [Streptomyces avermitilis MA-4680]
gi|29604379|dbj|BAC68450.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 117
Score = 40.3 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQEN 158
DL + G G+V + S L + + K L+P V V+ E
Sbjct: 19 DLIGYKVEATDG-SIGKVDKHSDDVNSSYLVVDTGVWIFGKHVLLPA--GTVKTVDQAER 75
Query: 159 KILIDPIAAGLNNTTMKNPQYDCP 182
KI +D + ++ +
Sbjct: 76 KIYVDLTKEQIKDSPEFDKDKHAG 99
>gi|108803282|ref|YP_643219.1| hypothetical protein Rxyl_0433 [Rubrobacter xylanophilus DSM 9941]
gi|108764525|gb|ABG03407.1| hypothetical protein Rxyl_0433 [Rubrobacter xylanophilus DSM 9941]
Length = 148
Score = 40.3 bits (94), Expect = 0.14, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 72 SASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVY---NFGAG 128
A L + + +F+ E EE ++ + D G+ G+V Y A
Sbjct: 22 EARALAGEEELVRIGEFEGELDEE----WREVRGRKVLDHAGEEVGRVEDAYVWARVPAV 77
Query: 129 SILEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
+L + + LIP AV V+ + ++
Sbjct: 78 HLLRVSAADGEDRLIPV--DAVTGVDEEGVRV 107
>gi|126460221|ref|YP_001056499.1| glycoside hydrolase family protein [Pyrobaculum calidifontis JCM
11548]
gi|126249942|gb|ABO09033.1| glycoside hydrolase, family 57 [Pyrobaculum calidifontis JCM 11548]
Length = 1006
Score = 40.3 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 21/134 (15%)
Query: 14 GTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILK--------MYRKNKRFIATFS 65
G GL GE +D YA+ +D +Y D + + + + F+
Sbjct: 611 GAVFGLRGE-RLDIYADMALDTCNGTVYLADGGKFVAVGNNALLSLIGAKPGGKLYVEFN 669
Query: 66 GIDNIHSA-SELRDLKLYAKRQDFKDEELEEDEF-F---------NTDLEEMETFDRQGK 114
G + +L +D ++ + + DL ME +D G
Sbjct: 670 GFVYVLGIPETTTSARLVMSAEDPPGDDFGPGSYNYPKNPAFRPGVFDLLGMEVYDL-GD 728
Query: 115 YWGQVCGVYNFGAG 128
V V G
Sbjct: 729 KLRFVFRVRELGGN 742
>gi|312113769|ref|YP_004011365.1| photosynthetic reaction center H subunit [Rhodomicrobium vannielii
ATCC 17100]
gi|311218898|gb|ADP70266.1| photosynthetic reaction center H subunit [Rhodomicrobium vannielii
ATCC 17100]
Length = 255
Score = 39.6 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 17/88 (19%)
Query: 96 DEFFNTDLEEMETFDRQGKYWGQVCG--------VYNFGAGSILEIKNTMEKTFLIPFTK 147
DE + D + G G++ + + LE+ + L+PFT
Sbjct: 142 DE-HDRDPRGFTVYGADGVKAGKIRDAWLDRSEVIIRY-----LEVTTPKGRNVLVPFTL 195
Query: 148 FAVLEVNLQENKILIDPIAAGLNNTTMK 175
+++ + K++++ I K
Sbjct: 196 S---KIDQGKGKVVLESILGAQIEDAPK 220
>gi|313203291|ref|YP_004041948.1| mgte intracellular region [Paludibacter propionicigenes WB4]
gi|312442607|gb|ADQ78963.1| MgtE intracellular region [Paludibacter propionicigenes WB4]
Length = 431
Score = 39.6 bits (92), Expect = 0.21, Method: Composition-based stats.
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGVYNFGAG 128
F+ + + + +D G G V + A
Sbjct: 7 FYVSQIIGCKIYDVNGTRLGSVMDIMVNTAQ 37
>gi|149912522|ref|ZP_01901056.1| ATPase [Roseobacter sp. AzwK-3b]
gi|149812928|gb|EDM72754.1| ATPase [Roseobacter sp. AzwK-3b]
Length = 376
Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 2 VKLDKLVLMATIGTTHGLNGEV---YIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNK 58
LD+ + + HG GE+ + S + P N + D + ++ Y +
Sbjct: 161 KSLDRFTKVGLVSNAHGTRGELLRWVLMSL-DQPAGPNATYVDLFDAFQKYLITEYARGN 219
Query: 59 RFIATFSGIDN--IHSASELR 77
R + F N S ELR
Sbjct: 220 RVVVIFDEAQNLSRESLEELR 240
>gi|315230071|ref|YP_004070507.1| 50S ribosomal protein L35Ae [Thermococcus barophilus MP]
gi|315183099|gb|ADT83284.1| LSU ribosomal protein L35Ae [Thermococcus barophilus MP]
Length = 85
Score = 38.8 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 8 VLMATIGTTHGLNGEVYID 26
++ I HG+ GEV +
Sbjct: 50 IIAGKIVKPHGVRGEVKVR 68
>gi|163839943|ref|YP_001624348.1| CBS domain-containing protein [Renibacterium salmoninarum ATCC
33209]
gi|162953419|gb|ABY22934.1| CBS domain containing protein [Renibacterium salmoninarum ATCC
33209]
Length = 428
Score = 38.8 bits (90), Expect = 0.38, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY-----NFGAGSI-LEIKNTMEKTFLIPFTK 147
F L ++ FD +G G++ V + ++ + ++ T ++ +P T+
Sbjct: 12 FIARLIGLDVFDPRGDRLGRLRDVVVHSRGHQAPHAVGIVVEVTGKRRVFVPMTR 66
>gi|220913255|ref|YP_002488564.1| MgtE intracellular region [Arthrobacter chlorophenolicus A6]
gi|219860133|gb|ACL40475.1| MgtE intracellular region [Arthrobacter chlorophenolicus A6]
Length = 427
Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY-----NFGAGSI--LEIKNTMEKTFLIPFTKFAVL 151
F L ++ FD G G++ V + GA + + ++ +K +P T+ +
Sbjct: 9 FVARLLGLDVFDPLGDRLGRLRDVVVLSRGSQGAPHVVGIVVEVPGKKRVFVPMTR--IT 66
Query: 152 EVN 154
++
Sbjct: 67 SID 69
>gi|116671336|ref|YP_832269.1| MgtE intracellular region [Arthrobacter sp. FB24]
gi|116611445|gb|ABK04169.1| MgtE intracellular region [Arthrobacter sp. FB24]
Length = 427
Score = 38.4 bits (89), Expect = 0.46, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY-----NFGAGSI--LEIKNTMEKTFLIPFTKFAVL 151
F L ++ FD G G++ V GA + + ++ +K +P T+ +
Sbjct: 9 FVARLLGLDVFDPLGDRLGRLRDVVVLSRGTRGAPHVVGIVVEVPGKKRVFVPMTR--IT 66
Query: 152 EVN 154
++
Sbjct: 67 SID 69
>gi|119960682|ref|YP_948487.1| magnesium transporter MgtE [Arthrobacter aurescens TC1]
gi|119947541|gb|ABM06452.1| putative magnesium transporter MgtE (contains CBS domain)
[Arthrobacter aurescens TC1]
Length = 427
Score = 38.4 bits (89), Expect = 0.52, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY-----NFGAGSI--LEIKNTMEKTFLIPFTKFAVL 151
F L ++ FD G G++ V GA + + ++ +K +P T+ +
Sbjct: 9 FVARLLGLDVFDPLGDRLGRLRDVVVLSRGTRGAPHVVGIVVEVPGKKRVFVPMTR--IT 66
Query: 152 EVN 154
++
Sbjct: 67 SID 69
>gi|284033287|ref|YP_003383218.1| MgtE intracellular region [Kribbella flavida DSM 17836]
gi|283812580|gb|ADB34419.1| MgtE intracellular region [Kribbella flavida DSM 17836]
Length = 420
Score = 38.4 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVYNFGAGSI-------LEIKNTMEKTFLIPFTKFAVL 151
+ L + +D G G+V V L ++ + +P T+ +
Sbjct: 9 YVARLAGLPVYDPNGDQVGKVRDVVVTLRQDTQPPRVLGLVVEVFTRRRIFLPMTRVTSI 68
Query: 152 EV 153
EV
Sbjct: 69 EV 70
>gi|302549846|ref|ZP_07302188.1| pimeloyl-CoA dehydrogenase, small subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302467464|gb|EFL30557.1| pimeloyl-CoA dehydrogenase, small subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 372
Score = 38.0 bits (88), Expect = 0.65, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 108 TFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAV-LEVNLQ 156
G G+V GV + GA +L + + + T V +V+L
Sbjct: 151 VRHEGGALRGEVTGVADAGAADVLLVPADDGGLYAVDATAATVTPQVSLD 200
>gi|303232567|ref|ZP_07319253.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
gi|302481354|gb|EFL44428.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
Length = 274
Score = 38.0 bits (88), Expect = 0.70, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 42/140 (30%)
Query: 30 NNPIDLNR--YVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASEL-----RDLKLY 82
+P +L R Y ++S D R L + RK+ + + L R +LY
Sbjct: 49 EHPKELGRVHYAVFSADARTLLGFFVKRKDVLGMVKL-----RDAFVALDGIAARGNELY 103
Query: 83 AKRQDFKDEELEEDEFFNTD----------------LEEMETFDRQGKYWGQVCGV---Y 123
K+ D L+ M+ G+ G + V
Sbjct: 104 VKQDAM-----------YHDAAAQKRLTSSWDTCLMLQGMDVITTNGEELGHIIDVAVDM 152
Query: 124 NFGAGSILEIKNTMEKTFLI 143
GA I + T ++
Sbjct: 153 PHGAVVEFHINDGSVATAMV 172
>gi|325964000|ref|YP_004241906.1| Mg/Co/Ni transporter MgtE with CBS domain [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470087|gb|ADX73772.1| Mg/Co/Ni transporter MgtE with CBS domain [Arthrobacter
phenanthrenivorans Sphe3]
Length = 427
Score = 37.6 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY------NFGAGSI-LEIKNTMEKTFLIPFTKFAVL 151
F L ++ FD G G++ V + + ++ +K +P T+ +
Sbjct: 9 FVARLLGLDVFDPLGDRLGRLRDVVVLSRGTQGPPHVVGIVVEVPGKKRVFVPMTR--IT 66
Query: 152 EVN 154
++
Sbjct: 67 SID 69
>gi|296283157|ref|ZP_06861155.1| photosynthetic reaction center subunit H [Citromicrobium
bathyomarinum JL354]
Length = 257
Score = 37.6 bits (87), Expect = 0.79, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 104 EEMETFDRQGKYWGQVCGV-YNFGAGSI--LEIKNTMEKTFLIPFTKFAVLEVNLQENKI 160
M GK G V V + I L + +M +T L P V ++ +I
Sbjct: 151 IGMSVIGADGKVAGTVSEVWIDRAEHVIRYLSVDLSMGRTVLAPMAMALVRG---RQGRI 207
Query: 161 LIDPIAA 167
+ID + A
Sbjct: 208 VIDALTA 214
>gi|308177945|ref|YP_003917351.1| CBS domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307745408|emb|CBT76380.1| CBS domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 412
Score = 37.2 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY-------NFGAGSILEIKNTMEKTFLIPFTK 147
F L ++ FD G G++ V A L ++ ++ +P T+
Sbjct: 5 FVARLLGLDVFDPLGDRLGRLRDVVVVSRGPKRPAACVGLVVEVPGKRRVFVPMTR 60
>gi|327285228|ref|XP_003227336.1| PREDICTED: mitogen-activated protein kinase 4-like [Anolis
carolinensis]
Length = 580
Score = 37.2 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 17/117 (14%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L LE + F + K ++ V S E
Sbjct: 220 AEMLTGKMLFAGSHELEQMQLI--------LETIPVFHEEDKE--ELLKVMPTFVNSTWE 269
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
+K + K L P + ++ E + +P+ +++P Y CP D
Sbjct: 270 VKKPLRK--LFP--EMNSQAIDFLEKILTFNPMDRLTTEMGLQHPYMSPYYCPEDEP 322
>gi|147770446|emb|CAN78143.1| hypothetical protein VITISV_032028 [Vitis vinifera]
Length = 387
Score = 36.9 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 92 ELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKF 148
E E E + D ++T D G+V + G L I + KT+++P+ +
Sbjct: 296 ETSETELYXEDWIGLKTLDEA----GKVKFISVPGNH--LAISRSDMKTYMVPYLED 346
>gi|239918021|ref|YP_002957579.1| Mg/Co/Ni transporter MgtE with CBS domain [Micrococcus luteus NCTC
2665]
gi|281415801|ref|ZP_06247543.1| Mg/Co/Ni transporter MgtE with CBS domain [Micrococcus luteus NCTC
2665]
gi|239839228|gb|ACS31025.1| Mg/Co/Ni transporter MgtE with CBS domain [Micrococcus luteus NCTC
2665]
Length = 422
Score = 36.9 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 19/74 (25%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGV-----------YNFGAGSILEIKNTMEKTFLIPFTK 147
F L ++ FD G G++ V + G L I+ +K +P T+
Sbjct: 7 FVARLLGLDVFDPLGDRLGRLRDVVVLDRGPAAAPFATG----LVIEVPGKKRVFVPMTR 62
Query: 148 FAVLEVNLQENKIL 161
V ++ +I+
Sbjct: 63 --VTSMD--SGRII 72
>gi|14329790|emb|CAC40999.1| anthranilate synthase [Agaricus bisporus]
Length = 801
Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 49 RILKMYRKNKRFIATFSGIDNIHSASELRDL---KLYAKRQDFKDEELEEDEFFNTDLEE 105
R+ M + + SGI + + + + K +++ E + +L
Sbjct: 461 RLSDMTKGKNVVLCALSGIASRNDVERYKGQGVGAILVGESLMKAKDVGE---YIKELMG 517
Query: 106 METFD----RQGKYWGQVCGV 122
+ D QG ++CGV
Sbjct: 518 TPSVDAKKEEQGTPLVKICGV 538
>gi|223934843|ref|ZP_03626762.1| hypothetical protein Cflav_PD5373 [bacterium Ellin514]
gi|223896296|gb|EEF62738.1| hypothetical protein Cflav_PD5373 [bacterium Ellin514]
Length = 181
Score = 36.5 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 101 TDLEEMETFDRQGKYWGQVCGVY--NFGAGSILEIKNTMEK 139
+DL + ++QG+ G++ V G I + ++
Sbjct: 104 SDLIGKKVENQQGQKLGKIKDVVVAQQGGNETYAIIDKADR 144
>gi|328880177|emb|CCA53416.1| hypothetical protein SVEN_0128 [Streptomyces venezuelae ATCC 10712]
Length = 165
Score = 36.5 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQEN 158
DL + G G+V + + L + + K L+P V+ +++ E
Sbjct: 62 DLTGYKVEAIDG-GIGKVDKHSDEIGDAYLVVDTGVWIFGKEVLLPA--DTVVRIDVDER 118
Query: 159 KILIDPIAAGLNNTTM 174
KI +D + +
Sbjct: 119 KIFVDRTKEEIKDAPE 134
>gi|170595119|ref|XP_001902254.1| Immunoglobulin I-set domain containing protein [Brugia malayi]
gi|158590169|gb|EDP28898.1| Immunoglobulin I-set domain containing protein [Brugia malayi]
Length = 576
Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 10 MATIGTT-HGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGID 68
M I T G GE+ I ++ Y + + K + + F+ +
Sbjct: 109 MGVIIGTKQGTKGEITI--STPELFEVKNYP----EKQVAHETKHEDEFENFMNEIEEMK 162
Query: 69 NI-----HSASELRDLKLYAKRQDFKDEELEEDEF 98
LR +YA++ DFK ++++DEF
Sbjct: 163 KRRRKEHEEMERLRPKNIYAEKIDFKKPDIDDDEF 197
>gi|149186464|ref|ZP_01864777.1| hypothetical protein ED21_23283 [Erythrobacter sp. SD-21]
gi|148830053|gb|EDL48491.1| hypothetical protein ED21_23283 [Erythrobacter sp. SD-21]
Length = 274
Score = 36.1 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSI--LEIKNTME 138
M G++ G V + +G + L ++
Sbjct: 202 GMPVQLPSGEHLGTVRDIVATRSGEVRQLVVETKDG 237
>gi|262195357|ref|YP_003266566.1| hypothetical protein Hoch_2128 [Haliangium ochraceum DSM 14365]
gi|262078704|gb|ACY14673.1| hypothetical protein Hoch_2128 [Haliangium ochraceum DSM 14365]
Length = 128
Score = 36.1 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETF-DRQGKYW 116
A LR ++Y + E E+D F+ DLE + G
Sbjct: 41 AHHLRGARIYVIGRREVREAAEQDGFYLDDLEGLHVVCHPDGLVL 85
>gi|168218239|ref|ZP_02643864.1| PRC-barrel domain protein [Clostridium perfringens NCTC 8239]
gi|182379746|gb|EDT77225.1| PRC-barrel domain protein [Clostridium perfringens NCTC 8239]
Length = 157
Score = 36.1 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGV 122
+ DL ++ FD GK G VC +
Sbjct: 2 YRIRDLIGLKVFDSNGKKVGVVCDL 26
>gi|18310764|ref|NP_562698.1| PRC-barrel domain protein [Clostridium perfringens str. 13]
gi|110803713|ref|YP_699067.1| PRC-barrel domain-containing protein [Clostridium perfringens
SM101]
gi|168207850|ref|ZP_02633855.1| PRC-barrel domain protein [Clostridium perfringens E str. JGS1987]
gi|169343525|ref|ZP_02864524.1| PRC-barrel domain protein [Clostridium perfringens C str. JGS1495]
gi|182625670|ref|ZP_02953439.1| PRC-barrel domain protein [Clostridium perfringens D str. JGS1721]
gi|18145445|dbj|BAB81488.1| hypothetical protein [Clostridium perfringens str. 13]
gi|110684214|gb|ABG87584.1| PRC-barrel domain protein [Clostridium perfringens SM101]
gi|169298085|gb|EDS80175.1| PRC-barrel domain protein [Clostridium perfringens C str. JGS1495]
gi|170660824|gb|EDT13507.1| PRC-barrel domain protein [Clostridium perfringens E str. JGS1987]
gi|177909072|gb|EDT71547.1| PRC-barrel domain protein [Clostridium perfringens D str. JGS1721]
Length = 157
Score = 36.1 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGV 122
+ DL ++ FD GK G VC +
Sbjct: 2 YRIRDLIGLKVFDSNGKKVGVVCDL 26
>gi|168214259|ref|ZP_02639884.1| PRC-barrel domain protein [Clostridium perfringens CPE str. F4969]
gi|170714283|gb|EDT26465.1| PRC-barrel domain protein [Clostridium perfringens CPE str. F4969]
Length = 157
Score = 36.1 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGV 122
+ DL ++ FD GK G VC +
Sbjct: 2 YRIRDLIGLKVFDSNGKKVGVVCDL 26
>gi|110800448|ref|YP_696467.1| PRC-barrel domain-containing protein [Clostridium perfringens ATCC
13124]
gi|168211407|ref|ZP_02637032.1| PRC-barrel domain protein [Clostridium perfringens B str. ATCC
3626]
gi|110675095|gb|ABG84082.1| PRC-barrel domain protein [Clostridium perfringens ATCC 13124]
gi|170710665|gb|EDT22847.1| PRC-barrel domain protein [Clostridium perfringens B str. ATCC
3626]
Length = 160
Score = 36.1 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 98 FFNTDLEEMETFDRQGKYWGQVCGV 122
+ DL ++ FD GK G VC +
Sbjct: 2 YRIRDLIGLKVFDSNGKKVGVVCDL 26
>gi|291452500|ref|ZP_06591890.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355449|gb|EFE82351.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 136
Score = 36.1 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQEN 158
DL + G G+V + + L + + K ++P V V+ E
Sbjct: 38 DLIGYKVEATDGT-IGKVDKHSDEVGSAYLVVDTGVWIFGKHVMLPA--GTVRTVDGAER 94
Query: 159 KILIDPIAAGLNNTTMKNPQYDCP 182
KI ++ + N+ +
Sbjct: 95 KIHVELTKEQIKNSPEFDKDRHAG 118
>gi|330959456|gb|EGH59716.1| putative phage-related integrase/recombinase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 394
Score = 36.1 bits (83), Expect = 2.7, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 8 VLMATIGTTHGLNGEVYIDSYANNPIDLNRYVLYSNDNRELRI---LKMYRKNKRFIATF 64
+ MA +G HG+ G ++P D D ++ + + + +K F
Sbjct: 132 LRMAVLGKWHGIKGW-------DSPTDNKEVKALKRDAQKAQARGGITIRKKTALVAEPF 184
Query: 65 SGIDNIHSASELRDLK 80
I + +A LR ++
Sbjct: 185 KAILDTCAADGLRGIR 200
>gi|209964963|ref|YP_002297878.1| hypothetical protein RC1_1666 [Rhodospirillum centenum SW]
gi|209958429|gb|ACI99065.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 206
Score = 35.7 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 103 LEEMETFDRQGKYWGQVCGVY---NFGAGSILEIKNT-----MEKTFLIPFTKFAV 150
L D G+ G+V V N G + I + K +PF + +
Sbjct: 97 LMGKTVVDASGEELGEVKDVVMDANTGEARQIVISSGGFLGIGAKDIAVPFQQAQI 152
>gi|326521490|dbj|BAK00321.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 35.7 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 33 IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEE 92
+L+++V + I R + R + + + +A LR+ L +R+ + E
Sbjct: 161 EELDKFVREQGEQLRRAIADRMRHHNRALLVAA---DKSAARRLREKALEVEREARRGAE 217
Query: 93 LEE 95
LEE
Sbjct: 218 LEE 220
>gi|239980641|ref|ZP_04703165.1| hypothetical protein SalbJ_14448 [Streptomyces albus J1074]
Length = 117
Score = 35.7 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQEN 158
DL + G G+V + + L + + K ++P V V+ E
Sbjct: 19 DLIGYKVEATDGT-IGKVDKHSDEVGSAYLVVDTGVWIFGKHVMLPA--GTVRTVDGAER 75
Query: 159 KILIDPIAAGLNNTTMKNPQYDCP 182
KI ++ + N+ +
Sbjct: 76 KIHVELTKEQIKNSPEFDKDRHAG 99
>gi|289705032|ref|ZP_06501444.1| hypothetical protein HMPREF0569_1811 [Micrococcus luteus SK58]
gi|289558244|gb|EFD51523.1| hypothetical protein HMPREF0569_1811 [Micrococcus luteus SK58]
Length = 422
Score = 35.7 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGV-----------YNFGAGSILEIKNTMEKTFLIPFTK 147
F L ++ FD G G++ V + G L I+ +K +P T+
Sbjct: 7 FVARLLGLDVFDPLGDRLGRLRDVVVLDRGPAAAPFATG----LVIEVPGKKRVFVPMTR 62
>gi|117929025|ref|YP_873576.1| MgtE intracellular region [Acidothermus cellulolyticus 11B]
gi|117649488|gb|ABK53590.1| MgtE intracellular region [Acidothermus cellulolyticus 11B]
Length = 429
Score = 35.7 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGV---YNFGAGSI----LEIKNTMEKTFLIPFTKFAVL 151
F L ++ FD G G++ V GA L ++ + IP T+ V
Sbjct: 10 FVARLAGVQVFDPNGDPVGRIRDVVVLLRLGAQQPRVLGLVVEVPPRRPIFIPMTR--VT 67
Query: 152 EVNLQENKILID 163
+ + +++
Sbjct: 68 SI--EAGAVVVT 77
>gi|257459167|ref|ZP_05624286.1| phosphate transporter [Campylobacter gracilis RM3268]
gi|257443552|gb|EEV18676.1| phosphate transporter [Campylobacter gracilis RM3268]
Length = 520
Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 33 IDLNRYVLYSNDNRELRILKMYRKNKRFIATFSGIDNIHS---ASELRDLKLYAKRQ-DF 88
+D NRY D + + + +K+ TF +D+I A L + +YA R DF
Sbjct: 206 LDYNRYAQIKIDRIKREKKSLRKLHKK---TFETLDDIQKIAYAEAL-NHDIYAMRDPDF 261
Query: 89 KDEELEEDEFF 99
EL+ E++
Sbjct: 262 DPSELDS-EYY 271
>gi|325261785|ref|ZP_08128523.1| glycine betaine/L-proline ABC transporter, ATP-binding protein
[Clostridium sp. D5]
gi|324033239|gb|EGB94516.1| glycine betaine/L-proline ABC transporter, ATP-binding protein
[Clostridium sp. D5]
Length = 255
Score = 35.3 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 20/78 (25%)
Query: 85 RQDFKDEELEEDEF---FNTDL-------EEM--------ETFDRQGKYWGQVCGVYNFG 126
R+ + +L+ DEF + + L + E + +G V + G
Sbjct: 120 RELLELVKLDPDEFQGRYPSQLSGGQQQRVGLARALAVEPEVMLMD-EPFGAVDAITRTG 178
Query: 127 AGS-ILEIKNTMEKTFLI 143
+L + + KTFL+
Sbjct: 179 LQDELLSLHRGLGKTFLL 196
>gi|148257642|ref|YP_001242227.1| reaction center protein H chain [Bradyrhizobium sp. BTAi1]
gi|146409815|gb|ABQ38321.1| Reaction center protein H chain (Photosynthetic reaction center H
subunit) [Bradyrhizobium sp. BTAi1]
Length = 260
Score = 35.3 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSIL-----EIKNTMEKTFLIPFTKFAVLEVNLQENK 159
M F G+ G++ V+ A ++ E++ T+ + L+P T V +
Sbjct: 153 GMPVFGCDGQLGGKIREVWVDRAEMLIRYLEVEVEGTVGRHVLLPMTMAVV---DKSRKA 209
Query: 160 ILIDPIAA 167
+L+D I
Sbjct: 210 VLVDAILG 217
>gi|125540720|gb|EAY87115.1| hypothetical protein OsI_08517 [Oryza sativa Indica Group]
Length = 341
Score = 35.3 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 33 IDLNRYVLYSNDN-RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE 91
+L+R++ + R ++ R N+ + +A LR+ L A+R+ +
Sbjct: 159 EELDRFIKEQGEQLRRAMADRVRRHNRALLVAAE----RSAARRLREKALEAEREARRGA 214
Query: 92 ELEE 95
ELEE
Sbjct: 215 ELEE 218
>gi|41052730|dbj|BAD07587.1| S-ribonuclease binding protein SBP1-like [Oryza sativa Japonica
Group]
Length = 342
Score = 35.3 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 33 IDLNRYVLYSNDN-RELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDE 91
+L+R++ + R ++ R N+ + +A LR+ L A+R+ +
Sbjct: 160 EELDRFIKEQGEQLRRAMADRVRRHNRALLVAAE----RSAARRLREKALEAEREARRGA 215
Query: 92 ELEE 95
ELEE
Sbjct: 216 ELEE 219
>gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis
X14]
gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14]
Length = 300
Score = 35.3 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 114 KYWG-QVCGVYNFGAGSILEIKNTMEKTFLIP 144
+ G + V GAG +L + KT ++P
Sbjct: 155 EALGLKRRDVPQPGAGDVLVVTGKGNKTRMVP 186
>gi|324501308|gb|ADY40585.1| Intermediate peptidase [Ascaris suum]
Length = 1010
Score = 35.3 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 76 LRDLKLYAKRQ---DFKDEELEEDEFFNTDLEEMETFDRQGKYWGQV 119
L+ ++ A R F E E+ E + D+ +++ D +G G +
Sbjct: 680 LKGFEMLADRLYGIKFIITEPEDGEVWPGDIIKIDVRDSEGVTMGVI 726
>gi|301609890|ref|XP_002934484.1| PREDICTED: mitogen-activated protein kinase 4-like [Xenopus
(Silurana) tropicalis]
Length = 577
Score = 35.3 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L D + K ++ V + E
Sbjct: 220 AEMLTGRMLFAGSHELEQMQL------ILDTI--PVIHEEDKE--ELLKVMPSFINASWE 269
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
++ + K L+P + ++ E + +P+ +++P Y CP D
Sbjct: 270 VRKPLRK--LLP--EMNSEAIDFLEKILTFNPMDRLTAEAALQHPYMSPYSCPEDEP 322
>gi|241667096|ref|YP_002985180.1| serine/threonine protein kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862553|gb|ACS60218.1| serine/threonine protein kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 801
Score = 35.3 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 31 NPIDLNRYVLYSNDNRELRILKMYRKNKRFI----ATFSGI-DNIHSASELRDLKLYAKR 85
P+ N +++Y ++ + + A F + +I+ A L + + +
Sbjct: 13 EPVYENEFIVYPAQDKRMDHAVFIVAPDMALKLDKARFERVWTSINEAKSLTARR-FVEI 71
Query: 86 QDFKDEELEEDEFFNTD 102
+D E+D F+ +
Sbjct: 72 EDLIPPSPEDDNFYIVE 88
>gi|326334194|ref|ZP_08200417.1| putative magnesium transporter MgtE (contains CBS domain)
[Nocardioidaceae bacterium Broad-1]
gi|325947985|gb|EGD40102.1| putative magnesium transporter MgtE (contains CBS domain)
[Nocardioidaceae bacterium Broad-1]
Length = 442
Score = 35.3 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVYNFGAGSI-------LEIKNTMEKTFLIPFTKFAVL 151
+ L + FD G+ G+V + L ++ + +P T+ V
Sbjct: 9 YAARLVGLPIFDPLGEQVGKVRDLVVTVRSDARQPRVLGLVVEVFGRRRIFVPMTR--VT 66
Query: 152 EVNLQENKI 160
++ +I
Sbjct: 67 SID--AGQI 73
>gi|282860568|ref|ZP_06269634.1| hypothetical protein SACTEDRAFT_0179 [Streptomyces sp. ACTE]
gi|282564304|gb|EFB69840.1| hypothetical protein SACTEDRAFT_0179 [Streptomyces sp. ACTE]
Length = 117
Score = 35.3 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 101 TDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQE 157
DL G G+V + + + + + K L+P V ++ +
Sbjct: 18 ADLTGYTVEATDG-SIGKVDKHSDDVGSAYIVVDTGVWIFGKEVLLPA--GTVKGIDTEH 74
Query: 158 NKILIDPIAAGLNNTTMKNPQY 179
I +D + ++ + +
Sbjct: 75 RTIFVDLTKEQIKDSPEFDKEK 96
>gi|26348153|dbj|BAC37716.1| unnamed protein product [Mus musculus]
Length = 478
Score = 35.3 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L D + K ++ V S E
Sbjct: 220 AEMLTGKMLFAGAHELEQMQL------ILDTI--PVVREEDKE--ELLRVMPSFVSSTWE 269
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
+K + K L+P ++ E + +P+ +++P Y CP D
Sbjct: 270 VKRPLRK--LLPDVNS--EAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEP 322
>gi|184199974|ref|YP_001854181.1| flavohemoprotein [Kocuria rhizophila DC2201]
gi|183580204|dbj|BAG28675.1| flavohemoprotein [Kocuria rhizophila DC2201]
Length = 394
Score = 34.9 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 117 GQVCGVYN--FGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTM 174
G+V V + G +LE+ N L P + V + I I P+ A L+
Sbjct: 226 GEVTPVLHRDVAVGDVLELSNPYGDVVLDPASPA--PLVLVSAG-IGITPVLAFLDQLVR 282
Query: 175 KNPQYD 180
++P+ +
Sbjct: 283 EDPERE 288
>gi|187607866|ref|NP_001119865.1| guanine nucleotide exchange factor VAV3 [Danio rerio]
gi|169145731|emb|CAQ15261.1| novel protein similar to vertebrate vav3 oncogene (VAV3) [Danio
rerio]
gi|169154703|emb|CAQ15412.1| novel protein similar to vertebrate vav3 oncogene (VAV3) [Danio
rerio]
gi|169159032|emb|CAQ15262.1| novel protein similar to vertebrate vav3 oncogene (VAV3) [Danio
rerio]
Length = 822
Score = 34.9 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 33/107 (30%)
Query: 78 DLKLYAKRQDFKDEELEEDEF--FNTDLEEMETFDRQGKYWGQVCGVYNFGAGS------ 129
+ +Y D DEELEED + D+E E ++ + A
Sbjct: 137 NEDIYIHLADLIDEELEEDVYDPVYGDIEGGEVYE----------DLMRTEAAKQAEVDI 186
Query: 130 ----ILEIKNTM----------EKTFLIPFTKFAVLEVNLQENKILI 162
+LEIK T EK F+IP K + ++ + I I
Sbjct: 187 RSCCLLEIKQTEAKYTETLETIEKYFMIPLMK-FIPATDIDKVFINI 232
>gi|254381572|ref|ZP_04996936.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194340481|gb|EDX21447.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 130
Score = 34.9 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 102 DLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTM---EKTFLIPFTKFAVLEVNLQEN 158
DL + G G+V + + L + + K L+P + V+ ++ ++
Sbjct: 27 DLTGYKVEATDG-SIGKVDKHSDEVGDAYLVVDTGVWIFGKEVLLPAST--VVRIDPEDK 83
Query: 159 KILID 163
KI +D
Sbjct: 84 KIFVD 88
>gi|254381165|ref|ZP_04996530.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194340075|gb|EDX21041.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 126
Score = 34.9 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 101 TDLEEMETFDRQGKYWGQV-CGVYNFGAGSILEIKNT--MEKTFLIPFTKFAVLEVNLQE 157
DL + G G+V G+ I+ K L+P V V+ +
Sbjct: 27 ADLTGYKVEATDG-SIGKVDKHSDEVGSAYIVVDTGPWIFGKEVLLPA--GTVSRVDPDD 83
Query: 158 NKILIDPIAAGLNNTTMKNPQY 179
+I +D + N +
Sbjct: 84 KRIFVDRTKEQIKNAPEFDKDK 105
>gi|239617308|ref|YP_002940630.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506139|gb|ACR79626.1| RNA binding S1 domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 715
Score = 34.9 bits (80), Expect = 5.6, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 27/141 (19%)
Query: 41 YSNDNRELRILKMYRKNKRFIATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFN 100
E I +K F+ I L++ L R + L +D
Sbjct: 584 LRGKLEEFDIESFVKKAG-----FNPITVKEVVKALKNPGLD-PRDELPKPILHDDVLSI 637
Query: 101 TDLEEMETFDRQGKYWGQVCGVYNFGA-------GSILEIKNTMEKTFLIPF-------- 145
DL + G V V +FGA L K M K P
Sbjct: 638 EDL------RPDMELEGTVRNVVDFGAFVDIGVKQDGLIHKTRMGKNVCDPLEVLSVGQI 691
Query: 146 TKFAVLEVNLQENKILIDPIA 166
K VL ++L+ +I ++ +
Sbjct: 692 VKVKVLSIDLERERIALELVE 712
>gi|254418314|ref|ZP_05032038.1| hypothetical protein BBAL3_624 [Brevundimonas sp. BAL3]
gi|196184491|gb|EDX79467.1| hypothetical protein BBAL3_624 [Brevundimonas sp. BAL3]
Length = 127
Score = 34.9 bits (80), Expect = 5.9, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAG--SILEIKNTMEKTFLIPFTKFAV 150
G+ GQV GV G I+ T L+P V
Sbjct: 60 VGATARGSSGEALGQVVGVSRGSGGRIDGYLIRLPDGSTRLLPADAATV 108
>gi|89337268|ref|NP_766220.2| mitogen-activated protein kinase 4 [Mus musculus]
gi|52000801|sp|Q6P5G0|MK04_MOUSE RecName: Full=Mitogen-activated protein kinase 4; Short=MAP kinase
4; Short=MAPK 4; AltName: Full=Extracellular
signal-regulated kinase 4; Short=ERK-4
gi|37590652|gb|AAH58942.1| Mitogen-activated protein kinase 4 [Mus musculus]
gi|38565984|gb|AAH62911.1| Mitogen-activated protein kinase 4 [Mus musculus]
gi|148677602|gb|EDL09549.1| mitogen-activated protein kinase 4 [Mus musculus]
Length = 583
Score = 34.9 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L D + K ++ V S E
Sbjct: 220 AEMLTGKMLFAGAHELEQMQL------ILDTI--PVVREEDKE--ELLRVMPSFVSSTWE 269
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
+K + K L+P ++ E + +P+ +++P Y CP D
Sbjct: 270 VKRPLRK--LLPDVNS--EAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEP 322
>gi|291394379|ref|XP_002713525.1| PREDICTED: mitogen-activated protein kinase 4 [Oryctolagus
cuniculus]
Length = 536
Score = 34.5 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L LE + + K ++ V S +
Sbjct: 220 AEMLTGRMLFAGAHELEQMQLI--------LETIPVIREEDKD--ELLRVMPSFVNSSWQ 269
Query: 133 IKNTMEKTFLIPFTKFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
+K + K L+P ++ E + +P+ +++P Y CP D
Sbjct: 270 VKRPLRK--LLPDVDS--EAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEP 322
>gi|256389354|ref|YP_003110918.1| MgtE intracellular region [Catenulispora acidiphila DSM 44928]
gi|256355580|gb|ACU69077.1| MgtE intracellular region [Catenulispora acidiphila DSM 44928]
Length = 454
Score = 34.5 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCG-VYNFGAGS--------ILEIKNTMEKTFLIP 144
+ + L FD G+ G++ V + GAG +LE++ + +P
Sbjct: 8 YVSHLAGRSVFDADGEPVGRIRDIVVSMGAGDAAPRVLGLVLEMQMHGRRRVFLP 62
>gi|269925557|ref|YP_003322180.1| hypothetical protein Tter_0437 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789217|gb|ACZ41358.1| hypothetical protein Tter_0437 [Thermobaculum terrenum ATCC
BAA-798]
Length = 101
Score = 34.5 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSI----------LEIKNTM---EKTFLIPFTKFAV 150
E ME G+ G++ ++ A + +E+++ ++T IPF + V
Sbjct: 12 EGMEVLSSDGQKLGKIKNIWYGAASGMSSAYSDEESCIEVRSGGLFSKETLYIPF-REIV 70
Query: 151 LEVNLQENKILI 162
++ N + I
Sbjct: 71 ---DVSGNNVKI 79
>gi|209964068|ref|YP_002296983.1| hypothetical protein RC1_0739 [Rhodospirillum centenum SW]
gi|209957534|gb|ACI98170.1| hypothetical protein RC1_0739 [Rhodospirillum centenum SW]
Length = 618
Score = 34.5 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 101 TDLEEMETFDRQGKYWGQVCGVY---NFGAGSILEIKNTMEKTFL-IPFTKFAVLEVNLQ 156
+ D QG G V V + L I + + +PF+ ++ Q
Sbjct: 528 HRIVGRAAVDPQGTSVGTVRDVLLSQDGSGVEALVIALEEDSRLVRVPFSG---TRIDPQ 584
Query: 157 ENKILIDPIAAGLNNTTMKNPQ 178
+I++ P+ + M P
Sbjct: 585 AEEIVL-PMP---RDEVMNAPA 602
>gi|87199611|ref|YP_496868.1| hypothetical protein Saro_1594 [Novosphingobium aromaticivorans DSM
12444]
gi|87135292|gb|ABD26034.1| hypothetical protein Saro_1594 [Novosphingobium aromaticivorans DSM
12444]
Length = 287
Score = 34.5 bits (79), Expect = 6.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 105 EMETFDRQGKYWGQVCGVYNFGAGSI--LEIKNTMEKTFLIPF 145
M G+ G+V V G++ L +K K L+P
Sbjct: 212 GMPVLGADGERLGKVRDVITDARGNVSALLVKAGSAK-ALLPA 253
>gi|159483155|ref|XP_001699628.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272733|gb|EDO98530.1| predicted protein [Chlamydomonas reinhardtii]
Length = 360
Score = 34.5 bits (79), Expect = 6.7, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 86 QDFKDEELEEDEFF-NTDLEEMETFDRQGKYWGQVCGVY---NFGA 127
+ +++ D + L +E R G+ G++ + + GA
Sbjct: 158 DELPPDQVPLDARYGFVKLLGLEVRTRMGRVLGKIRDITFNPDTGA 203
>gi|84496273|ref|ZP_00995127.1| mgtE domain protein [Janibacter sp. HTCC2649]
gi|84383041|gb|EAP98922.1| mgtE domain protein [Janibacter sp. HTCC2649]
Length = 311
Score = 34.5 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 102 DLEEMETFDRQGKYWGQVCGV-----YNFGAGSILEIKNTMEKTFLIPFTKFAVLEVNLQ 156
DL G G++ V L ++ + ++P++ N+
Sbjct: 22 DLLGRPVRTHDGAEVGRLEDVSIHLGMPHPDLERLLVRPDRHTSLMVPWSAVH----NVT 77
Query: 157 ENKILIDPIAAGLNNTTMKNPQYDCPLDSAGKK 189
++ I+ L N P D A +
Sbjct: 78 DDAIV-------LTNAPPCGAPEPGPPDLAPAE 103
>gi|269836036|ref|YP_003318264.1| heat shock protein Hsp20 [Sphaerobacter thermophilus DSM 20745]
gi|269785299|gb|ACZ37442.1| heat shock protein Hsp20 [Sphaerobacter thermophilus DSM 20745]
Length = 248
Score = 34.5 bits (79), Expect = 7.4, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPF 145
E ME G+ G V V + L + TM++ +PF
Sbjct: 180 EGMEVVGADGQRVGVVKEVRDR---DFL-VDRTMKRDVYVPF 217
>gi|160881561|ref|YP_001560529.1| preprotein translocase, YajC subunit [Clostridium phytofermentans
ISDg]
gi|160430227|gb|ABX43790.1| preprotein translocase, YajC subunit [Clostridium phytofermentans
ISDg]
Length = 110
Score = 34.5 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 104 EEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLIPFTKFAVLEV 153
G ++G V V + ++ ++ K IP K AV+EV
Sbjct: 57 IGDSVLTTSG-FYGVVIDVMD----DVIIVEFGNNKNCRIPMKKSAVVEV 101
>gi|109506789|ref|XP_225726.4| PREDICTED: mitogen-activated protein kinase 4 [Rattus norvegicus]
gi|109507545|ref|XP_001053505.1| PREDICTED: mitogen-activated protein kinase 4 [Rattus norvegicus]
gi|149027187|gb|EDL82911.1| mitogen-activated protein kinase 4 [Rattus norvegicus]
Length = 583
Score = 34.5 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 19/118 (16%)
Query: 73 ASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILE 132
A L L+A + + +L D + K ++ V S E
Sbjct: 220 AEMLTGKMLFAGAHELEQMQL------ILDTI--PVVREEDKE--ELLRVMPSFVSSTWE 269
Query: 133 IKNTMEKTFLIPFT-KFAVLEVNLQENKILIDPIAAGLNNTTMKNP---QYDCPLDSA 186
+K + K L+P + A ++ E + +P+ +++P Y CP D
Sbjct: 270 VKRPLRK--LLPDVNREA---IDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEP 322
>gi|156744052|ref|YP_001434181.1| glycosyl transferase family protein [Roseiflexus castenholzii DSM
13941]
gi|156235380|gb|ABU60163.1| glycosyl transferase family 39 [Roseiflexus castenholzii DSM 13941]
Length = 677
Score = 34.5 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 11/57 (19%)
Query: 80 KLYAKRQDFKDEELEEDEFFNTDLEE---------METFDRQGKYWGQVCGVYNFGA 127
+L R D L E E+ L + D+ + ++ +
Sbjct: 621 ELVIDRGDMPLPPLPEGEYRL--LIGLYDAETGVRLPVRDQTAVELTTIRVIHTAPS 675
>gi|304317856|ref|YP_003853001.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779358|gb|ADL69917.1| NADH:flavin oxidoreductase/NADH oxidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 665
Score = 34.5 bits (79), Expect = 7.8, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 26/141 (18%)
Query: 55 RKNKRFIATFSGIDNIHSAS--ELRDLK--LYAKRQDF---------KDEELEEDE---F 98
+ K+ + G+ +A LR + +Y K + ++ +
Sbjct: 402 QHKKKVLIVGGGVAGCEAARVLALRGHEPIVYEKTDRLGGNLIPGGVPSFKEDDHALVAW 461
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFLI---P---FTKFAVLE 152
+ +L+++ G V NFGA ++ + K F + P + +
Sbjct: 462 YENELKKLNVEVHLNTELGA-DDVINFGADVVIVATGSKPKVFSLGDGPVYTAQDALLGK 520
Query: 153 VNLQENKILIDPIAAGLNNTT 173
V++ + ++I GL
Sbjct: 521 VDIGNDVVII---GGGLVGCE 538
>gi|57640904|ref|YP_183382.1| 50S ribosomal protein L35Ae [Thermococcus kodakarensis KOD1]
gi|57159228|dbj|BAD85158.1| LSU ribosomal protein L35AE [Thermococcus kodakarensis KOD1]
Length = 86
Score = 34.2 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 9 LMATIGTTHGLNGEVY 24
L+ I THG GEV
Sbjct: 52 LVGKIVRTHGTRGEVK 67
>gi|209964067|ref|YP_002296982.1| PRC1_-barrel domain protein [Rhodospirillum centenum SW]
gi|209957533|gb|ACI98169.1| PRC1_-barrel domain protein [Rhodospirillum centenum SW]
Length = 240
Score = 34.2 bits (78), Expect = 8.4, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 103 LEEMETFDRQGKYWGQVCGVYNFGAGSI--LEIKNTME----KTFL--IPF 145
L ++ D+ G G+V + +GSI L ++ + L +PF
Sbjct: 127 LIGLDVVDQGGDDVGEVHDLVLAKSGSIESLVVQTSTGFLGMNERLVAVPF 177
>gi|298244768|ref|ZP_06968574.1| hypothetical protein Krac_7389 [Ktedonobacter racemifer DSM 44963]
gi|297552249|gb|EFH86114.1| hypothetical protein Krac_7389 [Ktedonobacter racemifer DSM 44963]
Length = 160
Score = 34.2 bits (78), Expect = 8.7, Method: Composition-based stats.
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 102 DLEEMETFDRQGKYWGQVCGV 122
DL M + G+V V
Sbjct: 89 DLIGMPVVSENDEALGEVSEV 109
>gi|32423742|gb|AAP81266.1| pseudouridine synthase [Pseudomonas aeruginosa PA14]
Length = 320
Score = 34.2 bits (78), Expect = 8.9, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL-------IPFTKFAVLEVNLQENKIL 161
G + + + GA +LE + + +L I + +L ++ ++
Sbjct: 45 LTVDGAVL-RPRDIVHSGAQLVLEAEQEAQGEWLAQDIELEIVYEDEHILVIDKPAG-LV 102
Query: 162 IDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ P A + T + Y P + ++
Sbjct: 103 VHPAAGHQDGTLLNALLYHVPDIANVPRA 131
>gi|256825742|ref|YP_003149702.1| Mg/Co/Ni transporter MgtE with CBS domain [Kytococcus sedentarius
DSM 20547]
gi|256689135|gb|ACV06937.1| Mg/Co/Ni transporter MgtE with CBS domain [Kytococcus sedentarius
DSM 20547]
Length = 440
Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 99 FNTDLEEMETFDRQGKYWGQVCGVY--NFGAGSI-----LEIKNTMEKTFLIPFTKFAVL 151
F + L + FD G GQV V + A + L ++ + +P T+ +
Sbjct: 7 FVSRLIGLGVFDPIGDRVGQVRDVVVQHSSARQVTRVIGLVLEVPGRRRVFLPMTR--IT 64
Query: 152 EVNLQENKILIDPIAAGLNNTTMKNPQYD 180
++ +++ LN + +
Sbjct: 65 SID--AGQVITT---GLLNMRRFERRPRE 88
>gi|15599740|ref|NP_253234.1| pseudouridine synthase [Pseudomonas aeruginosa PAO1]
gi|116052689|ref|YP_793005.1| pseudouridine synthase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893639|ref|YP_002442508.1| pseudouridine synthase [Pseudomonas aeruginosa LESB58]
gi|254238708|ref|ZP_04932031.1| pseudouridine synthase [Pseudomonas aeruginosa C3719]
gi|254244558|ref|ZP_04937880.1| pseudouridine synthase [Pseudomonas aeruginosa 2192]
gi|296391365|ref|ZP_06880840.1| pseudouridine synthase [Pseudomonas aeruginosa PAb1]
gi|313107189|ref|ZP_07793388.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 39016]
gi|12231021|sp|P33640|RLUD_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=rRNA pseudouridylate synthase D; AltName:
Full=rRNA-uridine isomerase D
gi|9950788|gb|AAG07932.1|AE004868_3 pseudouridine synthase [Pseudomonas aeruginosa PAO1]
gi|115587910|gb|ABJ13925.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126170639|gb|EAZ56150.1| pseudouridine synthase [Pseudomonas aeruginosa C3719]
gi|126197936|gb|EAZ61999.1| pseudouridine synthase [Pseudomonas aeruginosa 2192]
gi|218773867|emb|CAW29681.1| pseudouridine synthase [Pseudomonas aeruginosa LESB58]
gi|310879890|gb|EFQ38484.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 39016]
Length = 320
Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL-------IPFTKFAVLEVNLQENKIL 161
G + + + GA +LE + + +L I + +L ++ ++
Sbjct: 45 LTVDGAVL-RPRDIVHSGAQLVLEAEQEAQGEWLAQDIELEIVYEDEHILVIDKPAG-LV 102
Query: 162 IDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ P A + T + Y P + ++
Sbjct: 103 VHPAAGHQDGTLLNALLYHVPDIANVPRA 131
>gi|107099793|ref|ZP_01363711.1| hypothetical protein PaerPA_01000811 [Pseudomonas aeruginosa PACS2]
Length = 317
Score = 34.2 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL-------IPFTKFAVLEVNLQENKIL 161
G + + + GA +LE + + +L I + +L ++ ++
Sbjct: 42 LTVDGAVL-RPRDIVHSGAQLVLEAEQEAQGEWLAQDIELEIVYEDEHILVIDKPAG-LV 99
Query: 162 IDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ P A + T + Y P + ++
Sbjct: 100 VHPAAGHQDGTLLNALLYHVPDIANVPRA 128
>gi|49083826|gb|AAT51150.1| PA4544 [synthetic construct]
Length = 321
Score = 34.2 bits (78), Expect = 9.2, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 109 FDRQGKYWGQVCGVYNFGAGSILEIKNTMEKTFL-------IPFTKFAVLEVNLQENKIL 161
G + + + GA +LE + + +L I + +L ++ ++
Sbjct: 45 LTVDGAVL-RPRDIVHSGAQLVLEAEQEAQGEWLAQDIELEIVYEDEHILVIDKPAG-LV 102
Query: 162 IDPIAAGLNNTTMKNPQYDCPLDSAGKKS 190
+ P A + T + Y P + ++
Sbjct: 103 VHPAAGHQDGTLLNALLYHVPDIANVPRA 131
>gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi
Nb-255]
gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC
gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255]
Length = 321
Score = 34.2 bits (78), Expect = 9.5, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 114 KYWG-QVCGVYNFGAGSILEIKNTMEKTFLIP 144
+ G + V GAG +L + KT ++P
Sbjct: 176 EALGLKRRDVPPPGAGDVLVVTGKGNKTRMVP 207
>gi|15896436|ref|NP_349785.1| DNA repair protein RadA [Clostridium acetobutylicum ATCC 824]
gi|15026258|gb|AAK81125.1|AE007814_3 Predicted ATP-dependent serine protease, RADA homolog [Clostridium
acetobutylicum ATCC 824]
gi|325510593|gb|ADZ22229.1| DNA repair protein RadA [Clostridium acetobutylicum EA 2018]
Length = 450
Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 2 VKLDKLVLMATIGTTHGLNGEVYIDSYAN 30
+KLDK++++ I GL GEV S+++
Sbjct: 381 IKLDKMIVVGEI----GLTGEVRPVSFSD 405
>gi|46126471|ref|XP_387789.1| hypothetical protein FG07613.1 [Gibberella zeae PH-1]
Length = 1273
Score = 34.2 bits (78), Expect = 9.6, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 98 FFNTDLEEMETFDRQGKYWGQ-VCGVYNFGAGSILEIKN-------TMEKTFLIPFTKFA 149
+F L + D +G V V S L + N + + ++P+
Sbjct: 467 YFYRGLANPKVLDTSKLEFGADVTDVIKTANLSSLLVGNILRLFNLDEDDSVVLPYISQV 526
Query: 150 VLEVNLQE--NKILIDPIAAGLNNTTMKNPQ 178
V L ++ I+ I L++ T PQ
Sbjct: 527 VKTYELPNLFKRMTIEEIKNMLDDITAVVPQ 557
>gi|157694047|ref|YP_001488509.1| amino acid ABC transporter ATP-binding protein [Bacillus pumilus
SAFR-032]
gi|157682805|gb|ABV63949.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Bacillus pumilus SAFR-032]
Length = 295
Score = 34.2 bits (78), Expect = 9.7, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 68 DNIHSASELRDLKLYAKR-----QDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCGV 122
+I A +L+ ++ + K +E +++++D+ +E GK+ V
Sbjct: 168 ADIEQADDLKGKEIAVSKGSSYADIAKKHSGQEPKYYDSDVVALEA-LANGKHDAVVTD- 225
Query: 123 YNFGA 127
+ GA
Sbjct: 226 FATGA 230
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.188 0.581
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,651,547,615
Number of Sequences: 14124377
Number of extensions: 257277587
Number of successful extensions: 608433
Number of sequences better than 10.0: 2241
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 1278
Number of HSP's that attempted gapping in prelim test: 599391
Number of HSP's gapped (non-prelim): 3822
length of query: 190
length of database: 4,842,793,630
effective HSP length: 131
effective length of query: 59
effective length of database: 2,992,500,243
effective search space: 176557514337
effective search space used: 176557514337
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 78 (34.2 bits)