RPSBLAST alignment for GI: 254780713 and conserved domain: pfam05239
>gnl|CDD|147440 pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain. Length = 77
Score = 45.7 bits (109), Expect = 7e-06
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 95 EDEFFNTDLEEMETFDRQGKYWGQVCGVY-NFGAGSILEIK-----NTMEKTFLIPFTKF 148
EDEF+ +DL +E + G+ G+V V + G G +L + +K LIPFTK
Sbjct: 1 EDEFYASDLIGLEVYTEDGEKLGKVKDVVIDEGEGDVLYLVVSVGGFLGDKEVLIPFTK- 59
Query: 149 AVLEVNLQENKILIDPIAA 167
LEV+L +++I++D
Sbjct: 60 --LEVDLGKDRIIVDAPKE 76