RPSBLAST alignment for GI: 254780713 and conserved domain: TIGR02273
>gnl|CDD|162792 TIGR02273, 16S_RimM, 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. Length = 165
Score = 122 bits (309), Expect = 5e-29
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 7 LVLMATIGTTHGLNGEVYIDSYANNPIDLNRY--VLYSNDNRELRILKMYRK---NKRFI 61
L+++ IG HG+ GEV + S+ + P L Y L +++ + +K+ R N + I
Sbjct: 1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTVKVARVRKQNNKLI 60
Query: 62 ATFSGIDNIHSASELRDLKLYAKRQDFKDEELEEDEFFNTDLEEMETFDRQGKYWGQVCG 121
F GID+ +A L+ L+L+ R+ ELEEDE++ TDL +E +G+ G+V
Sbjct: 61 VKFEGIDDREAAEALKGLELFVPREAL--PELEEDEYYWTDLIGLEVVTEEGEELGKVVE 118
Query: 122 VYNFGAGSILEIKN-TMEKTFLIPFTKFAVLEVNLQENKILIDPIA 166
+ GA +L +++ +K LIPF + V E++L++ I +D
Sbjct: 119 ILETGANDVLVVRSKKGKKEVLIPFVEEIVKEIDLEKKIITVDWPE 164