HHsearch alignment for GI: 254780714 and conserved domain: COG0336
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=751.02 Aligned_cols=230 Identities=51% Similarity=0.889 Sum_probs=223.7
Q ss_pred EEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf 45899851835644564033679999749659999602563589851353113068886177505889999987531147
Q gi|254780714|r 3 FHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYTH 82 (236)
Q Consensus 3 Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~~ 82 (236)
T Consensus 1 mki~ilTlFPemf~~~~~~si~grA~~~g~~~~~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~-- 78 (240)
T COG0336 1 MKIDILTLFPEMFDGYLGYSILGRAIEKGLLSLEVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK-- 78 (240)
T ss_pred CEEEEEEECHHHCHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCC--
T ss_conf 947689817544312422058999998695389962477835476753577657898861764288999999987235--
Q ss_pred CCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78308998799876048999997302875999415011448999740453100334011173277999999999850574
Q gi|254780714|r 83 EDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGV 162 (236)
Q Consensus 83 ~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipGv 162 (236)
T Consensus 79 -~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGDyVLtGGEl~AmvliDav~RlipGV 157 (240)
T COG0336 79 -KAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGDYVLTGGELAAMVLIDAVVRLIPGV 157 (240)
T ss_pred -CCEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf -8728998999883688999998658987999546445328988640633786336884186188999999999965523
Q ss_pred CCCCCCCCCCCHH-CCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
Q ss_conf 6782223344011-488462111672540898898434189989999999999999998768626863056346
Q gi|254780714|r 163 LGNQQSTIHESFE-NGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNT 235 (236)
Q Consensus 163 lg~~~S~~~eSf~-~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~ 235 (236)
T Consensus 158 lg~~~S~e~dSF~~~gLLe~P~YTRP~~~~g~~VP~VLlSGnH~~I~~WR~~qsl~rT~~rRPDL~~~~~~~~~ 231 (240)
T COG0336 158 LGNEESLEEDSFENNGLLEYPHYTRPREFEGMKVPEVLLSGNHAKIAQWRLEQSLERTKERRPDLLEAHKLTEE 231 (240)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHH
T ss_conf 38720101034456986678876783220799688123058679999999999999998739346665321255