HHSEARCH alignment of GI: 254780714 and SCOP domain: d1oy5a_

Alignment
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=740.02  Aligned_cols=229  Identities=38%  Similarity=0.635  Sum_probs=217.6

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|||||||||++++++||+|||+++|+|+++++|||||+.  |++|||+||||||||||||||+++|+++++++. 
T Consensus         2 pMki~IiTLFPe~f~~~l~~siigrA~~~g~i~i~~~nlRdfs~--~k~VDD~PyGGGpGMVm~~ePl~~Ai~~~~~~~-   78 (232)
T d1oy5a_           2 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAP--KGQVDDVPYGGLPGMVLKPEPIYEAYDYVVENY-   78 (232)
T ss_dssp             CEEEEEEESCHHHHHHHTTSHHHHHHHHHTSEEEEEEEGGGGCT--TSCCEECBSSCCSSCEECHHHHHHHHHHHHHHH-
T ss_pred             CEEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCC--CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC-
T ss_conf             80899999884652102225389999986966999855267277--897475633799861886037999999876404-


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                       .++++|||||||++|||++|++||+.++|||||||||||||||++ ++|+|||||||||||||+|||+++||++||+||
T Consensus        79 -~~~~vI~lSP~G~~~~Q~~a~~ls~~~~liliCGRYEGiDeRv~~-~~d~EiSiGDyVLsGGElaA~v~iDai~RllpG  156 (232)
T d1oy5a_          79 -GKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKK-IVDMEISLGDFILSGGEIVALAVIDAVSRVLPG  156 (232)
T ss_dssp             -CCCEEEEECTTBCCCCHHHHHHHHTCSEEEEEECBTTCBCGGGGG-GCCEECCBCSSCCSBSHHHHHHHHHHHHHTSTT
T ss_pred             -CCCCEEEECHHHCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHC-CCCEEEEECCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             -677147525121110424442442688489996441047667514-785388750489847862011478999988525


Q ss_pred             CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
Q ss_conf             467822233440114884621116725408988984341899899999999999999987686268630563469
Q gi|254780714|r  162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ  236 (236)
Q Consensus       162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e  236 (236)
                      ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||+++|+++|+++|||||++. ++++|
T Consensus       157 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VPevLlsGnH~~I~~Wr~~~s~~~T~~~RPDLl~~~-~~~~~  230 (232)
T d1oy5a_         157 VLSEPQSIQEDSFQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPKD-LTELE  230 (232)
T ss_dssp             TSSCC--------------CCCCBSCSEETTEECCGGGTSCSSSTTTHHHHHHHTTTGGGSCSSCSTTG-GGTTT
T ss_pred             CCCCCCCCCCCHHHCCCCCCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH-CCHHH
T ss_conf             557754332002316865642563655248996987873898899999999999999986694888754-02521


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: tRNA(m1G37)-methyltransferase TrmD
domain: tRNA(m1G37)-methyltransferase TrmD
species: Aquifex aeolicus [TaxId: 63363]