HHSEARCH alignment of GI: 254780714 and SCOP domain: d1to0a_

Alignment
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=94.43  E-value=0.034  Score=33.04  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=87.3

Q ss_pred             EEEEEEEECHHHHHHHHCCCH---HHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHH-HHHHHHHHH
Q ss_conf             458998518356445640336---7999974965999960256358985135311306888617750588-999998753
Q gi|254780714|r    3 FHASILTLYPEMFPGHLEKSV---AGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDIL-GKAIDHAVS   78 (236)
Q Consensus         3 Mki~IITlFPe~f~~~l~~sI---igkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi-~~ai~~~~~   78 (236)
                      |+|.|+++=--.- ++...++   .+|-  +..+.++.+++.+-...+..+.            ..++-+ .+--+.+.+
T Consensus         1 MkI~Ii~iGk~k~-~~~~~~~~~Y~kRl--~~~~~~~~iei~~~k~~~~~~~------------~~~~~~~~~E~~~il~   65 (157)
T d1to0a_           1 MNINIVTIGKLKE-KYLKQGIEEYTKRL--SAYAKIDIIELPDEKAPENLSD------------QDMKIIKDKEGDRILS   65 (157)
T ss_dssp             CEEEEEEESCCCC-HHHHHHHHHHHHHH--TTTSEEEEEEECCCCC---------------------CHHHHHHHHHHHT
T ss_pred             CEEEEEEECCCCC-HHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCCCH------------HHHHHHHHHHHHHHHH
T ss_conf             9799999637397-79999999999974--8646746999567545543106------------6789999999999986


Q ss_pred             HCCCCCCCEEEECCCCCEECHH-HHHHHHH-----CCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHH
Q ss_conf             1147783089987998760489-9999730-----287599941501144899974045310033401117327799999
Q gi|254780714|r   79 QYTHEDIPRILMSPRGKTLTQK-RVRQLSQ-----KLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILL  152 (236)
Q Consensus        79 ~~~~~~~~vI~lSP~Gk~l~Q~-~a~~ls~-----~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~  152 (236)
                      +. .++..+|.|.+.|+.++-. .|+.+.+     ..+++|+-|==.|+++.+.+. ++..+|+|+..++ -+++.++++
T Consensus        66 ~i-~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGGa~G~~~~~~~~-a~~~~Sls~mT~p-H~l~r~~l~  142 (157)
T d1to0a_          66 KI-SPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKR-ADEKLSFSKMTFP-HQLMRLILV  142 (157)
T ss_dssp             TS-CTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHH-CSEEEESCSSCCC-HHHHHHHHH
T ss_pred             HC-CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-CCCEEECCCCCCH-HHHHHHHHH
T ss_conf             02-89983898614114550799999999988558863499978998889889962-6958953468765-899999999


Q ss_pred             HHHHHH
Q ss_conf             999985
Q gi|254780714|r  153 DAVVRL  158 (236)
Q Consensus       153 dai~Rl  158 (236)
                      |-+-|-
T Consensus       143 EQiYRa  148 (157)
T d1to0a_         143 EQIYRA  148 (157)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein YydA
species: Bacillus subtilis [TaxId: 1423]