HHSEARCH alignment of GI: 254780714 and SCOP domain: d1uala_

Alignment
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=100.00  E-value=0  Score=769.94  Aligned_cols=234  Identities=45%  Similarity=0.795  Sum_probs=227.4

Q ss_pred             CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf             54589985183564456403367999974965999960256358985135311306888617750588999998753114
Q gi|254780714|r    2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT   81 (236)
Q Consensus         2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~   81 (236)
                      .|+|+|||||||||++++++||+|||+++|+|++++||||||+.|||++|||+||||||||||||||+++|++++++. .
T Consensus         2 ~M~i~IiTLFPe~f~~~l~~sIigrA~~~~lv~i~~~nlRdfs~dkhr~VDD~PyGGGpGMVmk~ePl~~ai~~~~~~-~   80 (252)
T d1uala_           2 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAA-A   80 (252)
T ss_dssp             CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHH-H
T ss_pred             CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHC-C
T ss_conf             867999998846401122243899999879669999881661789886727786789986304135688999997640-3


Q ss_pred             CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             77830899879987604899999730287599941501144899974045310033401117327799999999985057
Q gi|254780714|r   82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG  161 (236)
Q Consensus        82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG  161 (236)
                      .++.+||||||||++|||++|++||+.++|||||||||||||||+|+++|+|||||||||||||+||||++||++||+||
T Consensus        81 ~~~~~vI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~d~eiSiGDyVLsGGEl~A~v~idai~Rl~PG  160 (252)
T d1uala_          81 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG  160 (252)
T ss_dssp             CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             77783798889987503699987513562899956510076788875211353314688716645776668999998448


Q ss_pred             CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
Q ss_conf             467822233440114884621116725408988984341899899999999999999987686268630563469
Q gi|254780714|r  162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ  236 (236)
Q Consensus       162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e  236 (236)
                      ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||+++.++++|
T Consensus       161 vlg~~~S~~~eSF~~~lLe~P~YTrP~~~~g~~VPeVLlSG~H~~I~~Wr~~~sl~~T~~~RPDL~~~~~l~~~~  235 (252)
T d1uala_         161 VLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ  235 (252)
T ss_dssp             CC---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHH
T ss_conf             567732221023548886875224745238999890110799699999999999999987796899866899999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: tRNA(m1G37)-methyltransferase TrmD
domain: tRNA(m1G37)-methyltransferase TrmD
species: Haemophilus influenzae [TaxId: 727]