RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (236 letters) >3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:1-168) Length = 168 Score = 245 bits (627), Expect = 4e-66 Identities = 108/172 (62%), Positives = 134/172 (77%), Gaps = 5/172 (2%) Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 M F A +LTLYPEMFPG L S+AG+AL +WS++ +QIR+F+ D+HHSVDDTPAGGGA Sbjct: 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGA 61 Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 GMV+R D+L A+D D PR+LMSPRG+ L Q R L++ GV +VCGRFEG Sbjct: 62 GMVMRADVLAAALDSC-----PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEG 116 Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172 +DERIIEAR+LEE+S+GDYILSGGE AAL+LLDA+VRLLPGV+GN+ S E Sbjct: 117 VDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCE 168 >3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:1-192) Length = 192 Score = 244 bits (624), Expect = 9e-66 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 3/172 (1%) Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61 LTL+PEMF G L S+ +A N ++ + R+++ ++H+ VDD P GGG G Sbjct: 24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQG 83 Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121 MVL+ + + A++ E ILM P+G+ + ++ +LS+ ++ +CG +EG Sbjct: 84 MVLKPEPVFNAMEDLDV---TEQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGY 140 Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173 DERI +EIS+GDY+L+GGE A+ + DA+VRL+PGVLGN+QS +S Sbjct: 141 DERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDS 192 >1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:1-189) Length = 189 Score = 243 bits (623), Expect = 1e-65 Identities = 74/170 (43%), Positives = 106/170 (62%), Gaps = 1/170 (0%) Query: 3 FHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGM 62 +++L+PEMF E V G+A+ NL ++ R+F+ D+H +VDD P GGG GM Sbjct: 21 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 80 Query: 63 VLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGID 122 ++ V L AI A + E I +SP+G+ L Q V +L+Q +I+VCGR+EGID Sbjct: 81 LMMVQPLRDAIHTAKAA-AGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGID 139 Query: 123 ERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172 ER+I+ EE S+GDY+L+GGE A+ L+DAV R +PGVLG Q S + Sbjct: 140 ERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEED 189 >3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188) Length = 188 Score = 243 bits (622), Expect = 1e-65 Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%) Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61 + ++LT++P+MFPG L S G AL LW+++ IR F+ ++H++VDDTP GGG G Sbjct: 21 SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPG 80 Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121 M+LR D+LG+ ID +S H + + SPRG + TQ RQ + ++CGRFEGI Sbjct: 81 MLLRADVLGRCIDEVLSL--HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGI 138 Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQS 168 DER+++ L+E+S+GDY+LSGGE AA++++D VR++PGV+GN +S Sbjct: 139 DERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIGNAES 185 >1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171) Length = 171 Score = 236 bits (604), Expect = 2e-63 Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 5/172 (2%) Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61 +LT++P + + E + +A+ + I +R F+ VDD P GG G Sbjct: 5 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQ--VDDVPYGGLPG 62 Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121 MVL+ + + +A D+ V + ++ P G+ L QK V +LS+K ++I+CGR+EG+ Sbjct: 63 MVLKPEPIYEAYDYVVEN--YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGV 120 Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173 DER+ + D EIS+GD+ILSGGE AL ++DAV R+LPGVL QS +S Sbjct: 121 DERVKKIVD-MEISLGDFILSGGEIVALAVIDAVSRVLPGVLSEPQSIQEDS 171 >3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:169-233) Length = 65 Score = 99.0 bits (247), Expect = 5e-22 Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230 SFENGLLE PQYTRP ++EG IPP+L SG H+ I WR++Q+ +LT++ RPDL + Sbjct: 1 SFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALY 58 >1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:190-274) Length = 85 Score = 98.3 bits (245), Expect = 9e-22 Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230 SF +GLL+ P YTRP++ EGL +PP+L SG HE I+KWR +QS T RP+LL Sbjct: 1 SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGL 58 >3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:189-253) Length = 65 Score = 95.1 bits (237), Expect = 8e-21 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 172 ESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230 ES E G LE+PQYTRP W+G+ +P +L +G+H I+KWR+ S ++T RPDLL + Sbjct: 1 ESME-GSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDR 58 >1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221) Length = 50 Score = 87.4 bits (217), Expect = 2e-18 Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 174 FENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHR 223 F+N L +P YTRP+ + G+ +P L SG H+ I+ W+ T K R Sbjct: 1 FQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKR 50 >3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} (A:219-269) Length = 51 Score = 49.6 bits (119), Expect = 4e-07 Identities = 14/29 (48%), Positives = 16/29 (55%) Query: 201 SGDHERIKKWRKEQSFALTKKHRPDLLSK 229 SG+H I WR EQ T RPDL+ K Sbjct: 2 SGNHANIDAWRHEQKLIRTYNKRPDLIEK 30 >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} (A:1-55,A:359-403) Length = 100 Score = 28.0 bits (63), Expect = 1.0 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%) Query: 90 MSPRGKTL-TQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISV-GDYILSG---G 144 MS + + + + IV R I+ +I E +EI G+ + G G Sbjct: 1 MSKDFDLIIRNAYLSEKDSVYDIGIVGDRIIKIEAKI-EGTVKDEIDAKGNLVSPGIEVG 59 Query: 145 EPAALILLDA-----VVRLLPGVL 163 + A L++L++ + L Sbjct: 60 KKADLVVLNSLSPQWAIIDQAKRL 83 >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformational change, D314G mutant, hydrolase; 1.12A {Escherichia coli} (A:1-60,A:372-413) Length = 102 Score = 28.0 bits (63), Expect = 1.3 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 10/63 (15%) Query: 111 VIIVCGRFEGIDERI-IEARDLEEISV-GDYILSG---GEPAALILLDA-----VVRLLP 160 + + G+ ID + + + ++ G A LI+L A +R Sbjct: 26 IHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPIAAGNSANLIILPAENGFDALRRQV 85 Query: 161 GVL 163 V Sbjct: 86 PVR 88 >2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics, PSI-2, protein structure initiative; 2.30A {Chromobacterium violaceum} (A:1-241) Length = 241 Score = 25.6 bits (56), Expect = 5.8 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%) Query: 125 IIEARDLEEISVGDYIL-SGG----EPAALILLDAVVRLLP 160 + DLE + G SGG A + + Sbjct: 4 ELSPSDLEPLLQGACFFGSGGGGTXISARHLAANFRKGDYY 44 >2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A (A:) Length = 212 Score = 25.3 bits (55), Expect = 7.2 Identities = 7/34 (20%), Positives = 10/34 (29%) Query: 171 HESFENGLLEFPQYTRPQIWEGLAIPPILNSGDH 204 N EF G IP + + +H Sbjct: 157 PLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNH 190 >1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis} (A:) Length = 96 Score = 25.2 bits (55), Expect = 8.3 Identities = 4/21 (19%), Positives = 7/21 (33%) Query: 206 RIKKWRKEQSFALTKKHRPDL 226 KK ++Q K + Sbjct: 71 AFKKLTRKQKEQYLKTFHLEH 91 >1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans} (A:) Length = 107 Score = 25.2 bits (55), Expect = 9.0 Identities = 2/21 (9%), Positives = 5/21 (23%) Query: 206 RIKKWRKEQSFALTKKHRPDL 226 +K + + L Sbjct: 70 EVKHLSRRKKEQLVSLKGGPY 90 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.138 0.408 Gapped Lambda K H 0.267 0.0717 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,850,722 Number of extensions: 84621 Number of successful extensions: 269 Number of sequences better than 10.0: 1 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 22 Length of query: 236 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 150 Effective length of database: 2,048,819 Effective search space: 307322850 Effective search space used: 307322850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.2 bits)