RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780714|ref|YP_003065127.1| tRNA
(guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
(236 letters)
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
seattle structural genomics center for infectious
diseases; 2.50A {Bartonella henselae} (A:1-168)
Length = 168
Score = 245 bits (627), Expect = 4e-66
Identities = 108/172 (62%), Positives = 134/172 (77%), Gaps = 5/172 (2%)
Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60
M F A +LTLYPEMFPG L S+AG+AL +WS++ +QIR+F+ D+HHSVDDTPAGGGA
Sbjct: 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGA 61
Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120
GMV+R D+L A+D D PR+LMSPRG+ L Q R L++ GV +VCGRFEG
Sbjct: 62 GMVMRADVLAAALDSC-----PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEG 116
Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172
+DERIIEAR+LEE+S+GDYILSGGE AAL+LLDA+VRLLPGV+GN+ S E
Sbjct: 117 VDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCE 168
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
(guanine-7-)-methyltransferase, structural genomics,
infectious diseases; 2.35A {Staphylococcus aureus subsp}
(A:1-192)
Length = 192
Score = 244 bits (624), Expect = 9e-66
Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
LTL+PEMF G L S+ +A N ++ + R+++ ++H+ VDD P GGG G
Sbjct: 24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQG 83
Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
MVL+ + + A++ E ILM P+G+ + ++ +LS+ ++ +CG +EG
Sbjct: 84 MVLKPEPVFNAMEDLDV---TEQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGY 140
Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173
DERI +EIS+GDY+L+GGE A+ + DA+VRL+PGVLGN+QS +S
Sbjct: 141 DERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDS 192
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD,
tRNA(M1G37) methyltransferase, tRNA modification; HET:
SAH; 1.80A {Haemophilus influenzae} (A:1-189)
Length = 189
Score = 243 bits (623), Expect = 1e-65
Identities = 74/170 (43%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 3 FHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGM 62
+++L+PEMF E V G+A+ NL ++ R+F+ D+H +VDD P GGG GM
Sbjct: 21 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 80
Query: 63 VLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGID 122
++ V L AI A + E I +SP+G+ L Q V +L+Q +I+VCGR+EGID
Sbjct: 81 LMMVQPLRDAIHTAKAA-AGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGID 139
Query: 123 ERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172
ER+I+ EE S+GDY+L+GGE A+ L+DAV R +PGVLG Q S +
Sbjct: 140 ERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEED 189
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
seattle structural genomics center for infectious
disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188)
Length = 188
Score = 243 bits (622), Expect = 1e-65
Identities = 77/167 (46%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
+ ++LT++P+MFPG L S G AL LW+++ IR F+ ++H++VDDTP GGG G
Sbjct: 21 SMIFNVLTIFPQMFPGPLGVSNLGSALKKGLWTLNVFDIRAFANNKHNTVDDTPYGGGPG 80
Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
M+LR D+LG+ ID +S H + + SPRG + TQ RQ + ++CGRFEGI
Sbjct: 81 MLLRADVLGRCIDEVLSL--HPNTKLMFTSPRGVSFTQDIARQTMNFDNITLLCGRFEGI 138
Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQS 168
DER+++ L+E+S+GDY+LSGGE AA++++D VR++PGV+GN +S
Sbjct: 139 DERVVDFYKLQEVSIGDYVLSGGELAAMVIIDTCVRMVPGVIGNAES 185
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
TRMD, tRNA (M1G37) methyltransferase, BSGC structure
funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171)
Length = 171
Score = 236 bits (604), Expect = 2e-63
Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 5/172 (2%)
Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61
+LT++P + + E + +A+ + I +R F+ VDD P GG G
Sbjct: 5 PLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQ--VDDVPYGGLPG 62
Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121
MVL+ + + +A D+ V + ++ P G+ L QK V +LS+K ++I+CGR+EG+
Sbjct: 63 MVLKPEPIYEAYDYVVEN--YGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGV 120
Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHES 173
DER+ + D EIS+GD+ILSGGE AL ++DAV R+LPGVL QS +S
Sbjct: 121 DERVKKIVD-MEISLGDFILSGGEIVALAVIDAVSRVLPGVLSEPQSIQEDS 171
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
seattle structural genomics center for infectious
diseases; 2.50A {Bartonella henselae} (A:169-233)
Length = 65
Score = 99.0 bits (247), Expect = 5e-22
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
SFENGLLE PQYTRP ++EG IPP+L SG H+ I WR++Q+ +LT++ RPDL +
Sbjct: 1 SFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALY 58
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD,
tRNA(M1G37) methyltransferase, tRNA modification; HET:
SAH; 1.80A {Haemophilus influenzae} (A:190-274)
Length = 85
Score = 98.3 bits (245), Expect = 9e-22
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 173 SFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
SF +GLL+ P YTRP++ EGL +PP+L SG HE I+KWR +QS T RP+LL
Sbjct: 1 SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGL 58
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid,
seattle structural genomics center for infectious
disease; 2.25A {Anaplasma phagocytophilum HZ}
(A:189-253)
Length = 65
Score = 95.1 bits (237), Expect = 8e-21
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 172 ESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230
ES E G LE+PQYTRP W+G+ +P +L +G+H I+KWR+ S ++T RPDLL +
Sbjct: 1 ESME-GSLEYPQYTRPASWKGMEVPEVLLTGNHGEIEKWRRNASLSITAARRPDLLKDR 58
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
TRMD, tRNA (M1G37) methyltransferase, BSGC structure
funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221)
Length = 50
Score = 87.4 bits (217), Expect = 2e-18
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 174 FENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHR 223
F+N L +P YTRP+ + G+ +P L SG H+ I+ W+ T K R
Sbjct: 1 FQNRWLGYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKR 50
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
(guanine-7-)-methyltransferase, structural genomics,
infectious diseases; 2.35A {Staphylococcus aureus subsp}
(A:219-269)
Length = 51
Score = 49.6 bits (119), Expect = 4e-07
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 201 SGDHERIKKWRKEQSFALTKKHRPDLLSK 229
SG+H I WR EQ T RPDL+ K
Sbjct: 2 SGNHANIDAWRHEQKLIRTYNKRPDLIEK 30
>2qt3_A N-isopropylammelide isopropyl amidohydrolase;
N-isopropylammelide isopropylaminohydrolase ATZC,
structural genomics, NYSGXRC, target 9364B; 2.24A
{Pseudomonas SP} (A:1-55,A:359-403)
Length = 100
Score = 28.0 bits (63), Expect = 1.0
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 90 MSPRGKTL-TQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISV-GDYILSG---G 144
MS + + + + IV R I+ +I E +EI G+ + G G
Sbjct: 1 MSKDFDLIIRNAYLSEKDSVYDIGIVGDRIIKIEAKI-EGTVKDEIDAKGNLVSPGIEVG 59
Query: 145 EPAALILLDA-----VVRLLPGVL 163
+ A L++L++ + L
Sbjct: 60 KKADLVVLNSLSPQWAIIDQAKRL 83
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer,
conformational change, D314G mutant, hydrolase; 1.12A
{Escherichia coli} (A:1-60,A:372-413)
Length = 102
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 111 VIIVCGRFEGIDERI-IEARDLEEISV-GDYILSG---GEPAALILLDA-----VVRLLP 160
+ + G+ ID + + + ++ G A LI+L A +R
Sbjct: 26 IHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPIAAGNSANLIILPAENGFDALRRQV 85
Query: 161 GVL 163
V
Sbjct: 86 PVR 88
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Chromobacterium violaceum} (A:1-241)
Length = 241
Score = 25.6 bits (56), Expect = 5.8
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 125 IIEARDLEEISVGDYIL-SGG----EPAALILLDAVVRLLP 160
+ DLE + G SGG A + +
Sbjct: 4 ELSPSDLEPLLQGACFFGSGGGGTXISARHLAANFRKGDYY 44
>2wbn_A G2P, terminase large subunit; large terminase, nuclease,
viral protein, DNA packaging; 1.90A {Bacillus phage
SPP1} PDB: 2wc9_A (A:)
Length = 212
Score = 25.3 bits (55), Expect = 7.2
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 171 HESFENGLLEFPQYTRPQIWEGLAIPPILNSGDH 204
N EF G IP + + +H
Sbjct: 157 PLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNH 190
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta,
structural genomics, northeast structural genomics
consortium (NESG); NMR {Enterococcus faecalis} (A:)
Length = 96
Score = 25.2 bits (55), Expect = 8.3
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 206 RIKKWRKEQSFALTKKHRPDL 226
KK ++Q K +
Sbjct: 71 AFKKLTRKQKEQYLKTFHLEH 91
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure,
autostructure, northeast structural genomics consortium,
PSI; NMR {Bacillus halodurans} (A:)
Length = 107
Score = 25.2 bits (55), Expect = 9.0
Identities = 2/21 (9%), Positives = 5/21 (23%)
Query: 206 RIKKWRKEQSFALTKKHRPDL 226
+K + + L
Sbjct: 70 EVKHLSRRKKEQLVSLKGGPY 90
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,850,722
Number of extensions: 84621
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 22
Length of query: 236
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 150
Effective length of database: 2,048,819
Effective search space: 307322850
Effective search space used: 307322850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)