BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780714|ref|YP_003065127.1| tRNA
(guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
         (236 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 236

 Score =  486 bits (1252), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60
           MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA
Sbjct: 1   MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60

Query: 61  GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120
           GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG
Sbjct: 61  GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120

Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180
           IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE
Sbjct: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180

Query: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236
           FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ
Sbjct: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236


>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 25.4 bits (54), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 77  VSQYTHEDIPRILMSPRGKTL---TQKRVRQLSQKLGVIIVCGRFEGIDERIIEAR--DL 131
           V   T+  I +I  SPRG+ +    Q        + G I V G     D+ ++E +  D+
Sbjct: 183 VDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLG-----DKSLVEQKYSDI 237

Query: 132 EEISVGDY 139
           E+ S+ ++
Sbjct: 238 EKSSISNF 245


>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 431

 Score = 22.3 bits (46), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 195 IPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTL 233
           + P +N+  H++I   +KE  F +       L +   TL
Sbjct: 150 VNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL 188


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,702
Number of Sequences: 1233
Number of extensions: 6424
Number of successful extensions: 14
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 328,796
effective HSP length: 71
effective length of query: 165
effective length of database: 241,253
effective search space: 39806745
effective search space used: 39806745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)