BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (236 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 486 bits (1252), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA Sbjct: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG Sbjct: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE Sbjct: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180 Query: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ Sbjct: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 >gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] Length = 581 Score = 25.4 bits (54), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Query: 77 VSQYTHEDIPRILMSPRGKTL---TQKRVRQLSQKLGVIIVCGRFEGIDERIIEAR--DL 131 V T+ I +I SPRG+ + Q + G I V G D+ ++E + D+ Sbjct: 183 VDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLG-----DKSLVEQKYSDI 237 Query: 132 EEISVGDY 139 E+ S+ ++ Sbjct: 238 EKSSISNF 245 >gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 195 IPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTL 233 + P +N+ H++I +KE F + L + TL Sbjct: 150 VNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL 188 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,702 Number of Sequences: 1233 Number of extensions: 6424 Number of successful extensions: 14 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 6 length of query: 236 length of database: 328,796 effective HSP length: 71 effective length of query: 165 effective length of database: 241,253 effective search space: 39806745 effective search space used: 39806745 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)